@cornerstonejs/tools 1.22.0 → 1.23.0

package/dist/cjs/tools/displayTools/Surface/surfaceDisplay.js

@@ -0,0 +1,140 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const core_1 = require("@cornerstonejs/core");
+const SegmentationState = __importStar(require("../../../stateManagement/segmentation/segmentationState"));
+const SegmentationConfig = __importStar(require("../../../stateManagement/segmentation/config/segmentationConfig"));
+const SegmentationRepresentations_1 = __importDefault(require("../../../enums/SegmentationRepresentations"));
+const ToolGroupManager_1 = require("../../../store/ToolGroupManager");
+const removeSurfaceFromElement_1 = __importDefault(require("./removeSurfaceFromElement"));
+const addSurfaceToElement_1 = __importDefault(require("./addSurfaceToElement"));
+function addSegmentationRepresentation(toolGroupId, representationInput, toolGroupSpecificConfig) {
+    return __awaiter(this, void 0, void 0, function* () {
+        const { segmentationId } = representationInput;
+        const segmentationRepresentationUID = core_1.utilities.uuidv4();
+        const segmentsHidden = new Set();
+        const colorLUTIndex = 0;
+        const active = true;
+        const toolGroupSpecificRepresentation = {
+            segmentationId,
+            segmentationRepresentationUID,
+            type: SegmentationRepresentations_1.default.Surface,
+            segmentsHidden,
+            colorLUTIndex,
+            active,
+            segmentationRepresentationSpecificConfig: {},
+            segmentSpecificConfig: {},
+            config: {},
+        };
+        if (toolGroupSpecificConfig) {
+            const currentToolGroupConfig = SegmentationConfig.getToolGroupSpecificConfig(toolGroupId);
+            const mergedConfig = core_1.utilities.deepMerge(currentToolGroupConfig, toolGroupSpecificConfig);
+            SegmentationConfig.setToolGroupSpecificConfig(toolGroupId, {
+                renderInactiveSegmentations: mergedConfig.renderInactiveSegmentations || true,
+                representations: Object.assign({}, mergedConfig.representations),
+            });
+        }
+        SegmentationState.addSegmentationRepresentation(toolGroupId, toolGroupSpecificRepresentation);
+        return segmentationRepresentationUID;
+    });
+}
+function removeSegmentationRepresentation(toolGroupId, segmentationRepresentationUID, renderImmediate = false) {
+    _removeSurfaceFromToolGroupViewports(toolGroupId, segmentationRepresentationUID);
+    SegmentationState.removeSegmentationRepresentation(toolGroupId, segmentationRepresentationUID);
+    if (renderImmediate) {
+        const viewportsInfo = (0, ToolGroupManager_1.getToolGroup)(toolGroupId).getViewportsInfo();
+        viewportsInfo.forEach(({ viewportId, renderingEngineId }) => {
+            const enabledElement = (0, core_1.getEnabledElementByIds)(viewportId, renderingEngineId);
+            enabledElement.viewport.render();
+        });
+    }
+}
+function render(viewport, representation, toolGroupConfig) {
+    return __awaiter(this, void 0, void 0, function* () {
+        const { colorLUTIndex, active, segmentationId, segmentationRepresentationUID, segmentsHidden, } = representation;
+        const segmentation = SegmentationState.getSegmentation(segmentationId);
+        const SurfaceData = segmentation.representationData[SegmentationRepresentations_1.default.Surface];
+        const { geometryId } = SurfaceData;
+        if (!geometryId) {
+            console.warn(`No Surfaces found for segmentationId ${segmentationId}. Skipping render.`);
+        }
+        const geometry = core_1.cache.getGeometry(geometryId);
+        if (!geometry) {
+            throw new Error(`No Surfaces found for geometryId ${geometryId}`);
+        }
+        if (geometry.type !== core_1.Enums.GeometryType.SURFACE) {
+            throw new Error(`Geometry type ${geometry.type} not supported for rendering.`);
+        }
+        if (!geometry.data) {
+            console.warn(`No Surfaces found for geometryId ${geometryId}. Skipping render.`);
+            return;
+        }
+        const surface = geometry.data;
+        const surfaceUID = `${segmentationRepresentationUID}_${surface.id}}`;
+        _renderSurface(viewport, surface, surfaceUID);
+        viewport.resetCamera();
+        viewport.render();
+    });
+}
+function _renderSurface(viewport, surface, surfaceUID) {
+    const actorUID = surfaceUID;
+    const actorEntry = viewport.getActor(actorUID);
+    if (!actorEntry) {
+        (0, addSurfaceToElement_1.default)(viewport.element, surface, actorUID);
+    }
+    else {
+        throw new Error('Not implemented yet. (Update surface)');
+    }
+}
+function _removeSurfaceFromToolGroupViewports(toolGroupId, segmentationRepresentationUID) {
+    const toolGroup = (0, ToolGroupManager_1.getToolGroup)(toolGroupId);
+    if (toolGroup === undefined) {
+        throw new Error(`ToolGroup with ToolGroupId ${toolGroupId} does not exist`);
+    }
+    const { viewportsInfo } = toolGroup;
+    for (const viewportInfo of viewportsInfo) {
+        const { viewportId, renderingEngineId } = viewportInfo;
+        const enabledElement = (0, core_1.getEnabledElementByIds)(viewportId, renderingEngineId);
+        (0, removeSurfaceFromElement_1.default)(enabledElement.viewport.element, segmentationRepresentationUID);
+    }
+}
+exports.default = {
+    render,
+    addSegmentationRepresentation,
+    removeSegmentationRepresentation,
+};
+//# sourceMappingURL=surfaceDisplay.js.map

package/dist/cjs/tools/displayTools/Surface/surfaceDisplay.js.map

@@ -0,0 +1 @@
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package/dist/cjs/tools/index.d.ts

@@ -13,6 +13,7 @@ import MagnifyTool from './MagnifyTool';
 import AdvancedMagnifyTool from './AdvancedMagnifyTool';
 import ReferenceLinesTool from './ReferenceLinesTool';
 import OverlayGridTool from './OverlayGridTool';
+import SegmentationIntersectionTool from './SegmentationIntersectionTool';
 import BidirectionalTool from './annotation/BidirectionalTool';
 import LengthTool from './annotation/LengthTool';
 import ProbeTool from './annotation/ProbeTool';
@@ -36,4 +37,4 @@ import RectangleROIStartEndThresholdTool from './segmentation/RectangleROIStartE
 import BrushTool from './segmentation/BrushTool';
 import PaintFillTool from './segmentation/PaintFillTool';
 import OrientationMarkerTool from './OrientationMarkerTool';
-export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, StackScrollTool, PlanarRotateTool, StackScrollMouseWheelTool, ZoomTool, VolumeRotateMouseWheelTool, MIPJumpToClickTool, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, BidirectionalTool, LengthTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, PlanarFreehandROITool, ArrowAnnotateTool, AngleTool, CobbAngleTool, ReferenceCursors, SegmentationDisplayTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, ReferenceLines, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, };
+export { BaseTool, AnnotationTool, AnnotationDisplayTool, PanTool, TrackballRotateTool, DragProbeTool, WindowLevelTool, StackScrollTool, PlanarRotateTool, StackScrollMouseWheelTool, ZoomTool, VolumeRotateMouseWheelTool, MIPJumpToClickTool, CrosshairsTool, ReferenceLinesTool, OverlayGridTool, SegmentationIntersectionTool, BidirectionalTool, LengthTool, ProbeTool, RectangleROITool, EllipticalROITool, CircleROITool, PlanarFreehandROITool, ArrowAnnotateTool, AngleTool, CobbAngleTool, ReferenceCursors, SegmentationDisplayTool, RectangleScissorsTool, CircleScissorsTool, SphereScissorsTool, RectangleROIThresholdTool, RectangleROIStartEndThresholdTool, BrushTool, MagnifyTool, AdvancedMagnifyTool, ReferenceLines, PaintFillTool, ScaleOverlayTool, OrientationMarkerTool, };

package/dist/cjs/tools/index.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.OrientationMarkerTool = exports.ScaleOverlayTool = exports.PaintFillTool = exports.ReferenceLines = exports.AdvancedMagnifyTool = exports.MagnifyTool = exports.BrushTool = exports.RectangleROIStartEndThresholdTool = exports.RectangleROIThresholdTool = exports.SphereScissorsTool = exports.CircleScissorsTool = exports.RectangleScissorsTool = exports.SegmentationDisplayTool = exports.ReferenceCursors = exports.CobbAngleTool = exports.AngleTool = exports.ArrowAnnotateTool = exports.PlanarFreehandROITool = exports.CircleROITool = exports.EllipticalROITool = exports.RectangleROITool = exports.ProbeTool = exports.LengthTool = exports.BidirectionalTool = exports.OverlayGridTool = exports.ReferenceLinesTool = exports.CrosshairsTool = exports.MIPJumpToClickTool = exports.VolumeRotateMouseWheelTool = exports.ZoomTool = exports.StackScrollMouseWheelTool = exports.PlanarRotateTool = exports.StackScrollTool = exports.WindowLevelTool = exports.DragProbeTool = exports.TrackballRotateTool = exports.PanTool = exports.AnnotationDisplayTool = exports.AnnotationTool = exports.BaseTool = void 0;
+exports.OrientationMarkerTool = exports.ScaleOverlayTool = exports.PaintFillTool = exports.ReferenceLines = exports.AdvancedMagnifyTool = exports.MagnifyTool = exports.BrushTool = exports.RectangleROIStartEndThresholdTool = exports.RectangleROIThresholdTool = exports.SphereScissorsTool = exports.CircleScissorsTool = exports.RectangleScissorsTool = exports.SegmentationDisplayTool = exports.ReferenceCursors = exports.CobbAngleTool = exports.AngleTool = exports.ArrowAnnotateTool = exports.PlanarFreehandROITool = exports.CircleROITool = exports.EllipticalROITool = exports.RectangleROITool = exports.ProbeTool = exports.LengthTool = exports.BidirectionalTool = exports.SegmentationIntersectionTool = exports.OverlayGridTool = exports.ReferenceLinesTool = exports.CrosshairsTool = exports.MIPJumpToClickTool = exports.VolumeRotateMouseWheelTool = exports.ZoomTool = exports.StackScrollMouseWheelTool = exports.PlanarRotateTool = exports.StackScrollTool = exports.WindowLevelTool = exports.DragProbeTool = exports.TrackballRotateTool = exports.PanTool = exports.AnnotationDisplayTool = exports.AnnotationTool = exports.BaseTool = void 0;
 const base_1 = require("./base");
 Object.defineProperty(exports, "BaseTool", { enumerable: true, get: function () { return base_1.BaseTool; } });
 Object.defineProperty(exports, "AnnotationTool", { enumerable: true, get: function () { return base_1.AnnotationTool; } });
@@ -36,6 +36,8 @@ const ReferenceLinesTool_1 = __importDefault(require("./ReferenceLinesTool"));
 exports.ReferenceLinesTool = ReferenceLinesTool_1.default;
 const OverlayGridTool_1 = __importDefault(require("./OverlayGridTool"));
 exports.OverlayGridTool = OverlayGridTool_1.default;
+const SegmentationIntersectionTool_1 = __importDefault(require("./SegmentationIntersectionTool"));
+exports.SegmentationIntersectionTool = SegmentationIntersectionTool_1.default;
 const BidirectionalTool_1 = __importDefault(require("./annotation/BidirectionalTool"));
 exports.BidirectionalTool = BidirectionalTool_1.default;
 const LengthTool_1 = __importDefault(require("./annotation/LengthTool"));

package/dist/cjs/tools/index.js.map

@@ -1 +1 @@
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package/dist/cjs/types/SegmentationStateTypes.d.ts

@@ -1,6 +1,7 @@
 import * as Enums from '../enums';
 import { ContourConfig, ContourRenderingConfig, ContourSegmentationData } from './ContourTypes';
 import type { LabelmapConfig, LabelmapRenderingConfig, LabelmapSegmentationData } from './LabelmapTypes';
+import { SurfaceSegmentationData, SurfaceRenderingConfig } from './SurfaceTypes';
 export declare type Color = [number, number, number, number];
 export declare type ColorLUT = Array<Color>;
 export declare type SegmentSpecificRepresentationConfig = {
@@ -9,6 +10,7 @@ export declare type SegmentSpecificRepresentationConfig = {
 export declare type RepresentationConfig = {
     LABELMAP?: LabelmapConfig;
     CONTOUR?: ContourConfig;
+    SURFACE?: any;
 };
 export declare type SegmentationRepresentationConfig = {
     renderInactiveSegmentations: boolean;
@@ -17,6 +19,7 @@ export declare type SegmentationRepresentationConfig = {
 export declare type SegmentationRepresentationData = {
     LABELMAP?: LabelmapSegmentationData;
     CONTOUR?: ContourSegmentationData;
+    SURFACE?: SurfaceSegmentationData;
 };
 export declare type Segmentation = {
     segmentationId: string;
@@ -50,6 +53,11 @@ export declare type ToolGroupSpecificContourRepresentation = ToolGroupSpecificRe
     segmentationRepresentationSpecificConfig?: RepresentationConfig;
     segmentSpecificConfig?: SegmentSpecificRepresentationConfig;
 };
+export declare type ToolGroupSpecificSurfaceRepresentation = ToolGroupSpecificRepresentationState & {
+    config: SurfaceRenderingConfig;
+    segmentationRepresentationSpecificConfig?: RepresentationConfig;
+    segmentSpecificConfig?: SegmentSpecificRepresentationConfig;
+};
 export declare type ToolGroupSpecificRepresentation = ToolGroupSpecificLabelmapRepresentation | ToolGroupSpecificContourRepresentation;
 export declare type ToolGroupSpecificRepresentations = Array<ToolGroupSpecificRepresentation>;
 export declare type SegmentationState = {
@@ -67,7 +75,7 @@ export declare type SegmentationPublicInput = {
     segmentationId: string;
     representation: {
         type: Enums.SegmentationRepresentations;
-        data: LabelmapSegmentationData | ContourSegmentationData;
+        data: LabelmapSegmentationData | ContourSegmentationData | SurfaceSegmentationData;
     };
 };
 export declare type RepresentationPublicInput = {

package/dist/cjs/types/SurfaceTypes.d.ts

@@ -0,0 +1,4 @@
+export declare type SurfaceRenderingConfig = {};
+export declare type SurfaceSegmentationData = {
+    geometryId: string;
+};

package/dist/cjs/types/SurfaceTypes.js

@@ -0,0 +1,3 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+//# sourceMappingURL=SurfaceTypes.js.map

package/dist/cjs/types/SurfaceTypes.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SurfaceTypes.js","sourceRoot":"","sources":["../../../src/types/SurfaceTypes.ts"],"names":[],"mappings":""}

package/dist/cjs/utilities/dynamicVolume/getDataInTime.js

@@ -1,27 +1,25 @@
 "use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 const core_1 = require("@cornerstonejs/core");
+const utilities_1 = require("../segmentation/utilities");
+const pointInShapeCallback_1 = __importDefault(require("../pointInShapeCallback"));
 function getDataInTime(dynamicVolume, options) {
     let dataInTime;
     const frames = options.frameNumbers || [
         ...Array(dynamicVolume.numTimePoints).keys(),
     ];
     if (!options.maskVolumeId && !options.imageCoordinate) {
-        throw new Error('No ROI provided');
+        throw new Error('You should provide either maskVolumeId or imageCoordinate');
     }
     if (options.maskVolumeId && options.imageCoordinate) {
-        throw new Error('Please provide only one ROI');
+        throw new Error('You can only use one of maskVolumeId or imageCoordinate');
     }
     if (options.maskVolumeId) {
         const segmentationVolume = core_1.cache.getVolume(options.maskVolumeId);
-        const segScalarData = segmentationVolume.getScalarData();
-        const indexArray = [];
-        for (let i = 0, len = segScalarData.length; i < len; i++) {
-            if (segScalarData[i] !== 0) {
-                indexArray.push(i);
-            }
-        }
-        const dataInTime = _getTimePointDataMask(frames, indexArray, dynamicVolume);
+        const dataInTime = _getTimePointDataMask(frames, dynamicVolume, segmentationVolume);
         return dataInTime;
     }
     if (options.imageCoordinate) {
@@ -50,18 +48,60 @@ function _getTimePointDataCoordinate(frames, coordinate, volume) {
     });
     return value;
 }
-function _getTimePointDataMask(frames, indexArray, volume) {
-    const allScalarData = volume.getScalarDataArrays();
-    const value = [];
-    for (let i = 0; i < indexArray.length; i++) {
-        const indexValues = [];
-        frames.forEach((frame) => {
-            const activeScalarData = allScalarData[frame];
-            indexValues.push(activeScalarData[indexArray[i]]);
-        });
-        value.push(indexValues);
+function _getTimePointDataMask(frames, dynamicVolume, segmentationVolume) {
+    const { imageData: maskImageData } = segmentationVolume;
+    const segScalarData = segmentationVolume.getScalarData();
+    const len = segScalarData.length;
+    const nonZeroVoxelIndices = [];
+    nonZeroVoxelIndices.length = len;
+    let actualLen = 0;
+    for (let i = 0, len = segScalarData.length; i < len; i++) {
+        if (segScalarData[i] !== 0) {
+            nonZeroVoxelIndices[actualLen++] = i;
+        }
     }
-    return value;
+    nonZeroVoxelIndices.length = actualLen;
+    const dynamicVolumeScalarDataArray = dynamicVolume.getScalarDataArrays();
+    const values = [];
+    const isSameVolume = dynamicVolumeScalarDataArray[0].length === len &&
+        JSON.stringify(dynamicVolume.spacing) ===
+            JSON.stringify(segmentationVolume.spacing);
+    if (isSameVolume) {
+        for (let i = 0; i < nonZeroVoxelIndices.length; i++) {
+            const indexValues = [];
+            frames.forEach((frame) => {
+                const activeScalarData = dynamicVolumeScalarDataArray[frame];
+                indexValues.push(activeScalarData[nonZeroVoxelIndices[i]]);
+            });
+            values.push(indexValues);
+        }
+        return values;
+    }
+    const callback = ({ pointLPS: segPointLPS, value: segValue }) => {
+        if (segValue === 0) {
+            return;
+        }
+        const overlapIJKMinMax = (0, utilities_1.getVoxelOverlap)(dynamicVolume.imageData, dynamicVolume.dimensions, dynamicVolume.spacing, segPointLPS);
+        let count = 0;
+        const perFrameSum = new Map();
+        frames.forEach((frame) => perFrameSum.set(frame, 0));
+        const averageCallback = ({ index }) => {
+            for (let i = 0; i < frames.length; i++) {
+                const value = dynamicVolumeScalarDataArray[i][index];
+                const frame = frames[i];
+                perFrameSum.set(frame, perFrameSum.get(frame) + value);
+            }
+            count++;
+        };
+        (0, pointInShapeCallback_1.default)(dynamicVolume.imageData, () => true, averageCallback, overlapIJKMinMax);
+        const averageValues = [];
+        perFrameSum.forEach((sum) => {
+            averageValues.push(sum / count);
+        });
+        values.push(averageValues);
+    };
+    (0, pointInShapeCallback_1.default)(maskImageData, () => true, callback);
+    return values;
 }
 exports.default = getDataInTime;
 //# sourceMappingURL=getDataInTime.js.map

package/dist/cjs/utilities/dynamicVolume/getDataInTime.js.map

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package/dist/cjs/utilities/index.d.ts

@@ -11,6 +11,7 @@ import pointInShapeCallback from './pointInShapeCallback';
 import pointInSurroundingSphereCallback from './pointInSurroundingSphereCallback';
 import scroll from './scroll';
 import roundNumber from './roundNumber';
+import { pointToString } from './pointToString';
 import * as segmentation from './segmentation';
 import * as drawing from './drawing';
 import * as math from './math';
@@ -25,5 +26,6 @@ import { stackPrefetch, stackContextPrefetch } from './stackPrefetch';
 import * as viewport from './viewport';
 import * as touch from './touch';
 import * as dynamicVolume from './dynamicVolume';
+import * as polyDataUtils from './polyData/utils';
 import { triggerEvent } from '@cornerstonejs/core';
-export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, stackContextPrefetch, scroll, roundNumber, };
+export { math, planar, viewportFilters, drawing, debounce, dynamicVolume, throttle, orientation, isObject, touch, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, triggerAnnotationRender, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, viewport, cine, clip, boundingBox, rectangleROITool, planarFreehandROITool, stackPrefetch, stackContextPrefetch, scroll, roundNumber, pointToString, polyDataUtils, };

package/dist/cjs/utilities/index.js

@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.roundNumber = exports.scroll = exports.stackContextPrefetch = exports.stackPrefetch = exports.planarFreehandROITool = exports.rectangleROITool = exports.boundingBox = exports.clip = exports.cine = exports.viewport = exports.jumpToSlice = exports.getAnnotationNearPointOnEnabledElement = exports.getAnnotationNearPoint = exports.pointInSurroundingSphereCallback = exports.pointInShapeCallback = exports.triggerAnnotationRender = exports.triggerAnnotationRenderForViewportIds = exports.segmentation = exports.calibrateImageSpacing = exports.triggerEvent = exports.touch = exports.isObject = exports.orientation = exports.throttle = exports.dynamicVolume = exports.debounce = exports.drawing = exports.viewportFilters = exports.planar = exports.math = void 0;
+exports.polyDataUtils = exports.pointToString = exports.roundNumber = exports.scroll = exports.stackContextPrefetch = exports.stackPrefetch = exports.planarFreehandROITool = exports.rectangleROITool = exports.boundingBox = exports.clip = exports.cine = exports.viewport = exports.jumpToSlice = exports.getAnnotationNearPointOnEnabledElement = exports.getAnnotationNearPoint = exports.pointInSurroundingSphereCallback = exports.pointInShapeCallback = exports.triggerAnnotationRender = exports.triggerAnnotationRenderForViewportIds = exports.segmentation = exports.calibrateImageSpacing = exports.triggerEvent = exports.touch = exports.isObject = exports.orientation = exports.throttle = exports.dynamicVolume = exports.debounce = exports.drawing = exports.viewportFilters = exports.planar = exports.math = void 0;
 const getAnnotationNearPoint_1 = require("./getAnnotationNearPoint");
 Object.defineProperty(exports, "getAnnotationNearPoint", { enumerable: true, get: function () { return getAnnotationNearPoint_1.getAnnotationNearPoint; } });
 Object.defineProperty(exports, "getAnnotationNearPointOnEnabledElement", { enumerable: true, get: function () { return getAnnotationNearPoint_1.getAnnotationNearPointOnEnabledElement; } });
@@ -54,6 +54,8 @@ const scroll_1 = __importDefault(require("./scroll"));
 exports.scroll = scroll_1.default;
 const roundNumber_1 = __importDefault(require("./roundNumber"));
 exports.roundNumber = roundNumber_1.default;
+const pointToString_1 = require("./pointToString");
+Object.defineProperty(exports, "pointToString", { enumerable: true, get: function () { return pointToString_1.pointToString; } });
 const segmentation = __importStar(require("./segmentation"));
 exports.segmentation = segmentation;
 const drawing = __importStar(require("./drawing"));
@@ -83,6 +85,8 @@ const touch = __importStar(require("./touch"));
 exports.touch = touch;
 const dynamicVolume = __importStar(require("./dynamicVolume"));
 exports.dynamicVolume = dynamicVolume;
+const polyDataUtils = __importStar(require("./polyData/utils"));
+exports.polyDataUtils = polyDataUtils;
 const core_1 = require("@cornerstonejs/core");
 Object.defineProperty(exports, "triggerEvent", { enumerable: true, get: function () { return core_1.triggerEvent; } });
 //# sourceMappingURL=index.js.map

package/dist/cjs/utilities/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/utilities/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,qEAGkC;AAwDhC,uGA1DA,+CAAsB,OA0DA;AACtB,uHA1DA,+DAAsC,OA0DA;AAtDxC,0DAAkC;AAwChC,mBAxCK,kBAAQ,CAwCL;AAvCV,0DAAkC;AAyChC,mBAzCK,kBAAQ,CAyCL;AAxCV,0DAAkC;AA0ChC,mBA1CK,kBAAQ,CA0CL;AAzCV,kDAA0B;AAuDxB,eAvDK,cAAI,CAuDL;AAtDN,oFAA4D;AA2C1D,gCA3CK,+BAAqB,CA2CL;AA1CvB,oHAA4F;AA4C1F,gDA5CK,+CAAqC,CA4CL;AA3CvC,wFAAgE;AA4C9D,kCA5CK,iCAAuB,CA4CL;AA3CzB,yEAAiD;AAgD/C,sBAhDK,qBAAW,CAgDL;AA9Cb,kFAA0D;AA0CxD,+BA1CK,8BAAoB,CA0CL;AAzCtB,0GAAkF;AA0ChF,2CA1CK,0CAAgC,CA0CL;AAzClC,sDAA8B;AAqD5B,iBArDK,gBAAM,CAqDL;AApDR,gEAAwC;AAqDtC,sBArDK,qBAAW,CAqDL;AApDb,mDAAgD;AAqD9C,8FArDO,6BAAa,OAqDP;AAlDf,6DAA+C;AAgC7C,oCAAY;AA/Bd,mDAAqC;AAsBnC,0BAAO;AArBT,6CAA+B;AAkB7B,oBAAI;AAjBN,iDAAmC;AAkBjC,wBAAM;AAjBR,mEAAqD;AAkBnD,0CAAe;AAjBjB,2DAA6C;AAsB3C,kCAAW;AArBb,6CAA+B;AAmC7B,oBAAI;AAlCN,2DAA6C;AAoC3C,kCAAW;AAnCb,+EAAiE;AAqC/D,sDAAqB;AApCvB,qEAAuD;AAmCrD,4CAAgB;AAlClB,mDAAsE;AAoCpE,8FApCO,6BAAa,OAoCP;AACb,qGArCsB,oCAAoB,OAqCtB;AApCtB,qDAAuC;AA6BrC,4BAAQ;AA5BV,+CAAiC;AAiB/B,sBAAK;AAhBP,+DAAiD;AAY/C,sCAAa;AAXf,gEAAkD;AAqChD,sCAAa;AAlCf,8CAAmD;AAajD,6FAbO,mBAAY,OAaP"}

package/dist/cjs/utilities/math/point/distanceToPoint.d.ts

@@ -1,2 +1,4 @@
 import type { Types } from '@cornerstonejs/core';
-export default function distanceToPoint(p1: Types.Point2, p2: Types.Point2): number;
+declare type Point = Types.Point2 | Types.Point3;
+export default function distanceToPoint(p1: Point, p2: Point): number;
+export {};

package/dist/cjs/utilities/math/point/distanceToPoint.js

@@ -1,12 +1,12 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 function distanceToPoint(p1, p2) {
-    if ((p1 === null || p1 === void 0 ? void 0 : p1.length) !== 2 || (p2 === null || p2 === void 0 ? void 0 : p2.length) !== 2) {
-        throw Error('points should have 2 elements of [x, y]');
+    if (p1.length !== p2.length) {
+        throw Error('Both points should have the same dimensionality');
     }
-    const [x1, y1] = p1;
-    const [x2, y2] = p2;
-    return Math.sqrt(Math.pow(x1 - x2, 2) + Math.pow(y1 - y2, 2));
+    const [x1, y1, z1 = 0] = p1;
+    const [x2, y2, z2 = 0] = p2;
+    return Math.sqrt(Math.pow(x1 - x2, 2) + Math.pow(y1 - y2, 2) + Math.pow(z1 - z2, 2));
 }
 exports.default = distanceToPoint;
 //# sourceMappingURL=distanceToPoint.js.map

package/dist/cjs/utilities/math/point/distanceToPoint.js.map

@@ -1 +1 @@
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+{"version":3,"file":"distanceToPoint.js","sourceRoot":"","sources":["../../../../../src/utilities/math/point/distanceToPoint.ts"],"names":[],"mappings":";;AAWA,SAAwB,eAAe,CAAC,EAAS,EAAE,EAAS;IAC1D,IAAI,EAAE,CAAC,MAAM,KAAK,EAAE,CAAC,MAAM,EAAE;QAC3B,MAAM,KAAK,CAAC,iDAAiD,CAAC,CAAC;KAChE;IAED,MAAM,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC;IAC5B,MAAM,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC;IAE5B,OAAO,IAAI,CAAC,IAAI,CACd,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,CACnE,CAAC;AACJ,CAAC;AAXD,kCAWC"}

package/dist/cjs/utilities/pointToString.d.ts

@@ -0,0 +1 @@
+export declare function pointToString(point: any, decimals?: number): string;

package/dist/cjs/utilities/pointToString.js

@@ -0,0 +1,13 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.pointToString = void 0;
+function pointToString(point, decimals = 5) {
+    return (parseFloat(point[0]).toFixed(decimals) +
+        ',' +
+        parseFloat(point[1]).toFixed(decimals) +
+        ',' +
+        parseFloat(point[2]).toFixed(decimals) +
+        ',');
+}
+exports.pointToString = pointToString;
+//# sourceMappingURL=pointToString.js.map

package/dist/cjs/utilities/pointToString.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"pointToString.js","sourceRoot":"","sources":["../../../src/utilities/pointToString.ts"],"names":[],"mappings":";;;AAAA,SAAgB,aAAa,CAAC,KAAK,EAAE,QAAQ,GAAG,CAAC;IAC/C,OAAO,CACL,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;QACtC,GAAG;QACH,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;QACtC,GAAG;QACH,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;QACtC,GAAG,CACJ,CAAC;AACJ,CAAC;AATD,sCASC"}

package/dist/cjs/utilities/polyData/utils.d.ts

@@ -0,0 +1,4 @@
+import vtkPolyData from '@kitware/vtk.js/Common/DataModel/PolyData';
+export declare function getPoint(points: any, idx: any): any[];
+export declare function getPolyDataPointIndexes(polyData: vtkPolyData): any[];
+export declare function getPolyDataPoints(polyData: vtkPolyData): any[];

package/dist/cjs/utilities/polyData/utils.js

@@ -0,0 +1,58 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getPolyDataPoints = exports.getPolyDataPointIndexes = exports.getPoint = void 0;
+function getPoint(points, idx) {
+    if (idx < points.length / 3) {
+        return [points[idx * 3], points[idx * 3 + 1], points[idx * 3 + 2]];
+    }
+}
+exports.getPoint = getPoint;
+function getPolyDataPointIndexes(polyData) {
+    const linesData = polyData.getLines().getData();
+    let idx = 0;
+    const lineSegments = new Map();
+    while (idx < linesData.length) {
+        const segmentSize = linesData[idx++];
+        const segment = [];
+        for (let i = 0; i < segmentSize; i++) {
+            segment.push(linesData[idx + i]);
+        }
+        lineSegments.set(segment[0], segment);
+        idx += segmentSize;
+    }
+    const contours = [];
+    const findStartingPoint = (map) => {
+        for (const [key, value] of map.entries()) {
+            if (value !== undefined) {
+                return key;
+            }
+        }
+        return -1;
+    };
+    let startPoint = findStartingPoint(lineSegments);
+    while (startPoint !== -1) {
+        const contour = [startPoint];
+        while (lineSegments.has(startPoint)) {
+            const nextPoint = lineSegments.get(startPoint)[1];
+            if (lineSegments.has(nextPoint)) {
+                contour.push(nextPoint);
+            }
+            lineSegments.delete(startPoint);
+            startPoint = nextPoint;
+        }
+        contours.push(contour);
+        startPoint = findStartingPoint(lineSegments);
+    }
+    return contours.length ? contours : undefined;
+}
+exports.getPolyDataPointIndexes = getPolyDataPointIndexes;
+function getPolyDataPoints(polyData) {
+    const contoursIndexes = getPolyDataPointIndexes(polyData);
+    if (!contoursIndexes) {
+        return;
+    }
+    const rawPointsData = polyData.getPoints().getData();
+    return contoursIndexes.map((contourIndexes) => contourIndexes.map((index) => getPoint(rawPointsData, index)));
+}
+exports.getPolyDataPoints = getPolyDataPoints;
+//# sourceMappingURL=utils.js.map

package/dist/cjs/utilities/polyData/utils.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/segmentation/utilities.js

@@ -32,7 +32,7 @@ function getVoxelOverlap(imageData, dimensions, voxelSpacing, voxelCenter) {
     for (let i = 0; i < 2; i++) {
         for (let j = 0; j < 2; j++) {
             for (let k = 0; k < 2; k++) {
-                const point = voxelCenter;
+                const point = [...voxelCenter];
                 point[0] = point[0] + ((i * 2 - 1) * voxelSpacing[0]) / 2;
                 point[1] = point[1] + ((j * 2 - 1) * voxelSpacing[1]) / 2;
                 point[2] = point[2] + ((k * 2 - 1) * voxelSpacing[2]) / 2;
@@ -46,7 +46,7 @@ function getVoxelOverlap(imageData, dimensions, voxelSpacing, voxelCenter) {
 }
 exports.getVoxelOverlap = getVoxelOverlap;
 function processVolumes(segmentationVolume, thresholdVolumeInformation) {
-    const { spacing: segmentationSpacing, imageData: segmentationImageData } = segmentationVolume;
+    const { spacing: segmentationSpacing } = segmentationVolume;
     const scalarData = segmentationVolume.getScalarData();
     const volumeInfoList = [];
     let baseVolumeIdx = 0;

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