npm - @cornerstonejs/tools - Versions diffs - 1.12.1 → 1.13.0 - Mend

@cornerstonejs/tools 1.12.1 → 1.13.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (136) hide show

package/dist/esm/tools/annotation/PlanarFreehandROITool.js CHANGED Viewed

@@ -22,6 +22,7 @@ import { getIntersectionCoordinatesWithPolyline } from '../../utilities/math/pol
 import pointInShapeCallback from '../../utilities/pointInShapeCallback';
 import { isViewportPreScaled } from '../../utilities/viewport/isViewportPreScaled';
 import { getModalityUnit, } from '../../utilities/getModalityUnit';
+import { BasicStatsCalculator } from '../../utilities/math/basic';
 const { pointCanProjectOnLine } = polyline;
 const { EPSILON } = CONSTANTS;
 const PARALLEL_THRESHOLD = 1 - EPSILON;
@@ -46,6 +47,8 @@ class PlanarFreehandROITool extends AnnotationTool {
                 knotsRatioPercentageOnEdit: 40,
             },
             calculateStats: false,
+            getTextLines: defaultGetTextLines,
+            statsCalculator: BasicStatsCalculator,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -303,22 +306,10 @@ class PlanarFreehandROITool extends AnnotationTool {
                 ];
                 const worldPosEnd = imageData.indexToWorld([iMax, jMax, kMax]);
                 const canvasPosEnd = viewport.worldToCanvas(worldPosEnd);
-                let count = 0;
-                let sum = 0;
-                let sumSquares = 0;
-                let max = -Infinity;
-                const statCalculator = ({ value: newValue }) => {
-                    if (newValue > max) {
-                        max = newValue;
-                    }
-                    sum += newValue;
-                    sumSquares += newValue ** 2;
-                    count += 1;
-                };
                 let curRow = 0;
                 let intersections = [];
                 let intersectionCounter = 0;
-                pointInShapeCallback(imageData, (pointLPS, pointIJK) => {
+                const pointsInShape = pointInShapeCallback(imageData, (pointLPS, pointIJK) => {
                     let result = true;
                     const point = viewport.worldToCanvas(pointLPS);
                     if (point[1] != curRow) {
@@ -343,17 +334,17 @@ class PlanarFreehandROITool extends AnnotationTool {
                         result = false;
                     }
                     return result;
-                }, statCalculator, boundsIJK);
-                const mean = sum / count;
-                let stdDev = sumSquares / count - mean ** 2;
-                stdDev = Math.sqrt(stdDev);
+                }, this.configuration.statsCalculator.statsCallback, boundsIJK);
                 const modalityUnit = getModalityUnit(metadata.Modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                const stats = this.configuration.statsCalculator.getStatistics();
                 cachedStats[targetId] = {
                     Modality: metadata.Modality,
                     area,
-                    mean,
-                    max,
-                    stdDev,
+                    mean: stats[1]?.value,
+                    max: stats[0]?.value,
+                    stdDev: stats[3]?.value,
+                    statsArray: stats,
+                    pointsInShape: pointsInShape,
                     areaUnit: getCalibratedAreaUnits(null, image),
                     modalityUnit,
                 };
@@ -365,7 +356,7 @@ class PlanarFreehandROITool extends AnnotationTool {
         this._renderStats = (annotation, viewport, enabledElement, svgDrawingHelper) => {
             const data = annotation.data;
             const targetId = this.getTargetId(viewport);
-            const textLines = this._getTextLines(data, targetId);
+            const textLines = this.configuration.getTextLines(data, targetId);
             if (!textLines || textLines.length === 0) {
                 return;
             }
@@ -391,27 +382,6 @@ class PlanarFreehandROITool extends AnnotationTool {
                 bottomRight: viewport.canvasToWorld([left + width, top + height]),
             };
         };
-        this._getTextLines = (data, targetId) => {
-            const cachedVolumeStats = data.cachedStats[targetId];
-            const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
-            const textLines = [];
-            if (area) {
-                const areaLine = isEmptyArea
-                    ? `Area: Oblique not supported`
-                    : `Area: ${roundNumber(area)} ${areaUnit}`;
-                textLines.push(areaLine);
-            }
-            if (mean) {
-                textLines.push(`Mean: ${roundNumber(mean)} ${modalityUnit}`);
-            }
-            if (max) {
-                textLines.push(`Max: ${roundNumber(max)} ${modalityUnit}`);
-            }
-            if (stdDev) {
-                textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
-            }
-            return textLines;
-        };
         registerDrawLoop(this);
         registerEditLoopCommon(this);
         registerClosedContourEditLoop(this);
@@ -470,6 +440,27 @@ class PlanarFreehandROITool extends AnnotationTool {
         return annotationsWithinSlice;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
+    const textLines = [];
+    if (area) {
+        const areaLine = isEmptyArea
+            ? `Area: Oblique not supported`
+            : `Area: ${roundNumber(area)} ${areaUnit}`;
+        textLines.push(areaLine);
+    }
+    if (mean) {
+        textLines.push(`Mean: ${roundNumber(mean)} ${modalityUnit}`);
+    }
+    if (max) {
+        textLines.push(`Max: ${roundNumber(max)} ${modalityUnit}`);
+    }
+    if (stdDev) {
+        textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
+    }
+    return textLines;
+}
 PlanarFreehandROITool.toolName = 'PlanarFreehandROI';
 export default PlanarFreehandROITool;
 //# sourceMappingURL=PlanarFreehandROITool.js.map

package/dist/esm/tools/annotation/PlanarFreehandROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/tools/annotation/ProbeTool.d.ts CHANGED Viewed

@@ -30,7 +30,6 @@ declare class ProbeTool extends AnnotationTool {
     _activateModify: (element: any) => void;
     _deactivateModify: (element: any) => void;
     renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
-    _getTextLines(data: any, targetId: string): string[] | undefined;
     _calculateCachedStats(annotation: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: ModalityUnitOptions): any;
 }
 export default ProbeTool;

package/dist/esm/tools/annotation/ProbeTool.js CHANGED Viewed

@@ -17,6 +17,7 @@ class ProbeTool extends AnnotationTool {
         configuration: {
             shadow: true,
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -208,7 +209,7 @@ class ProbeTool extends AnnotationTool {
                 const handleGroupUID = '0';
                 drawHandlesSvg(svgDrawingHelper, annotationUID, handleGroupUID, [canvasCoordinates], { color });
                 renderStatus = true;
-                const textLines = this._getTextLines(data, targetId);
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (textLines) {
                     const textCanvasCoordinates = [
                         canvasCoordinates[0] + 6,
@@ -252,17 +253,6 @@ class ProbeTool extends AnnotationTool {
         triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
         evt.preventDefault();
     }
-    _getTextLines(data, targetId) {
-        const cachedVolumeStats = data.cachedStats[targetId];
-        const { index, value, modalityUnit } = cachedVolumeStats;
-        if (value === undefined) {
-            return;
-        }
-        const textLines = [];
-        textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
-        textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
-        return textLines;
-    }
     _calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions) {
         const data = annotation.data;
         const { viewportId, renderingEngineId } = enabledElement;
@@ -321,6 +311,17 @@ class ProbeTool extends AnnotationTool {
         return cachedStats;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { index, value, modalityUnit } = cachedVolumeStats;
+    if (value === undefined) {
+        return;
+    }
+    const textLines = [];
+    textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
+    textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
+    return textLines;
+}
 ProbeTool.toolName = 'Probe';
 export default ProbeTool;
 //# sourceMappingURL=ProbeTool.js.map

package/dist/esm/tools/annotation/ProbeTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/tools/annotation/RectangleROITool.d.ts CHANGED Viewed

@@ -34,7 +34,6 @@ declare class RectangleROITool extends AnnotationTool {
         width: number;
         height: number;
     };
-    _getTextLines: (data: any, targetId: string) => string[] | undefined;
     _calculateCachedStats: (annotation: any, viewPlaneNormal: any, viewUp: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: any) => any;
     _isInsideVolume: (index1: any, index2: any, dimensions: any) => boolean;
 }

package/dist/esm/tools/annotation/RectangleROITool.js CHANGED Viewed

@@ -17,6 +17,8 @@ import { resetElementCursor, hideElementCursor, } from '../../cursors/elementCur
 import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
 import { getModalityUnit } from '../../utilities/getModalityUnit';
 import { isViewportPreScaled } from '../../utilities/viewport/isViewportPreScaled';
+import { pointInShapeCallback } from '../../utilities/';
+import { BasicStatsCalculator } from '../../utilities/math/basic';
 const { transformWorldToIndex } = csUtils;
 class RectangleROITool extends AnnotationTool {
     constructor(toolProps = {}, defaultToolProps = {
@@ -24,6 +26,8 @@ class RectangleROITool extends AnnotationTool {
         configuration: {
             shadow: true,
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
+            statsCalculator: BasicStatsCalculator,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -413,7 +417,7 @@ class RectangleROITool extends AnnotationTool {
                     lineWidth,
                 }, dataId);
                 renderStatus = true;
-                const textLines = this._getTextLines(data, targetId);
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (!textLines || textLines.length === 0) {
                     continue;
                 }
@@ -444,19 +448,6 @@ class RectangleROITool extends AnnotationTool {
                 height: Math.abs(point0[1] - point1[1]),
             };
         };
-        this._getTextLines = (data, targetId) => {
-            const cachedVolumeStats = data.cachedStats[targetId];
-            const { area, mean, max, stdDev, areaUnit, modalityUnit } = cachedVolumeStats;
-            if (mean === undefined) {
-                return;
-            }
-            const textLines = [];
-            textLines.push(`Area: ${roundNumber(area)} ${areaUnit}`);
-            textLines.push(`Mean: ${roundNumber(mean)} ${modalityUnit}`);
-            textLines.push(`Max: ${roundNumber(max)} ${modalityUnit}`);
-            textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
-            return textLines;
-        };
         this._calculateCachedStats = (annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement, modalityUnitOptions) => {
             const { data } = annotation;
             const { viewportId, renderingEngineId } = enabledElement;
@@ -488,46 +479,25 @@ class RectangleROITool extends AnnotationTool {
                     const jMax = Math.max(worldPos1Index[1], worldPos2Index[1]);
                     const kMin = Math.min(worldPos1Index[2], worldPos2Index[2]);
                     const kMax = Math.max(worldPos1Index[2], worldPos2Index[2]);
+                    const boundsIJK = [
+                        [iMin, iMax],
+                        [jMin, jMax],
+                        [kMin, kMax],
+                    ];
                     const { worldWidth, worldHeight } = getWorldWidthAndHeightFromCorners(viewPlaneNormal, viewUp, worldPos1, worldPos2);
                     const scale = getCalibratedScale(image);
                     const area = Math.abs(worldWidth * worldHeight) / (scale * scale);
-                    let count = 0;
-                    let mean = 0;
-                    let stdDev = 0;
-                    let max = -Infinity;
-                    const yMultiple = dimensions[0];
-                    const zMultiple = dimensions[0] * dimensions[1];
-                    for (let k = kMin; k <= kMax; k++) {
-                        for (let j = jMin; j <= jMax; j++) {
-                            for (let i = iMin; i <= iMax; i++) {
-                                const value = scalarData[k * zMultiple + j * yMultiple + i];
-                                if (value > max) {
-                                    max = value;
-                                }
-                                count++;
-                                mean += value;
-                            }
-                        }
-                    }
-                    mean /= count;
-                    for (let k = kMin; k <= kMax; k++) {
-                        for (let j = jMin; j <= jMax; j++) {
-                            for (let i = iMin; i <= iMax; i++) {
-                                const value = scalarData[k * zMultiple + j * yMultiple + i];
-                                const valueMinusMean = value - mean;
-                                stdDev += valueMinusMean * valueMinusMean;
-                            }
-                        }
-                    }
-                    stdDev /= count;
-                    stdDev = Math.sqrt(stdDev);
                     const modalityUnit = getModalityUnit(metadata.Modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                    const pointsInShape = pointInShapeCallback(imageData, () => true, this.configuration.statsCalculator.statsCallback, boundsIJK);
+                    const stats = this.configuration.statsCalculator.getStatistics();
                     cachedStats[targetId] = {
                         Modality: metadata.Modality,
                         area,
-                        mean,
-                        stdDev,
-                        max,
+                        mean: stats[1]?.value,
+                        stdDev: stats[2]?.value,
+                        max: stats[0]?.value,
+                        statsArray: stats,
+                        pointsInShape: pointsInShape,
                         areaUnit: getCalibratedAreaUnits(null, image),
                         modalityUnit,
                     };
@@ -556,6 +526,19 @@ class RectangleROITool extends AnnotationTool {
         this._throttledCalculateCachedStats = throttle(this._calculateCachedStats, 100, { trailing: true });
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { area, mean, max, stdDev, areaUnit, modalityUnit } = cachedVolumeStats;
+    if (mean === undefined) {
+        return;
+    }
+    const textLines = [];
+    textLines.push(`Area: ${roundNumber(area)} ${areaUnit}`);
+    textLines.push(`Mean: ${roundNumber(mean)} ${modalityUnit}`);
+    textLines.push(`Max: ${roundNumber(max)} ${modalityUnit}`);
+    textLines.push(`Std Dev: ${roundNumber(stdDev)} ${modalityUnit}`);
+    return textLines;
+}
 RectangleROITool.toolName = 'RectangleROI';
 export default RectangleROITool;
 //# sourceMappingURL=RectangleROITool.js.map

package/dist/esm/tools/annotation/RectangleROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/esm/tools/base/AnnotationTool.d.ts CHANGED Viewed

@@ -1,9 +1,10 @@
 import type { Types } from '@cornerstonejs/core';
 import AnnotationDisplayTool from './AnnotationDisplayTool';
-import { Annotation, Annotations, EventTypes, ToolHandle, InteractionTypes } from '../../types';
+import { Annotation, Annotations, EventTypes, ToolHandle, InteractionTypes, ToolProps, PublicToolProps } from '../../types';
 import { StyleSpecifier } from '../../types/AnnotationStyle';
 declare abstract class AnnotationTool extends AnnotationDisplayTool {
     static toolName: any;
+    constructor(toolProps: PublicToolProps, defaultToolProps: ToolProps);
     abstract addNewAnnotation(evt: EventTypes.InteractionEventType, interactionType: InteractionTypes): Annotation;
     abstract cancel(element: HTMLDivElement): any;
     abstract handleSelectedCallback(evt: EventTypes.InteractionEventType, annotation: Annotation, handle: ToolHandle, interactionType: InteractionTypes): void;

package/dist/esm/tools/base/AnnotationTool.js CHANGED Viewed

@@ -4,8 +4,8 @@ import AnnotationDisplayTool from './AnnotationDisplayTool';
 import { isAnnotationLocked } from '../../stateManagement/annotation/annotationLocking';
 import { isAnnotationVisible } from '../../stateManagement/annotation/annotationVisibility';
 class AnnotationTool extends AnnotationDisplayTool {
-    constructor() {
-        super(...arguments);
+    constructor(toolProps, defaultToolProps) {
+        super(toolProps, defaultToolProps);
         this.mouseMoveCallback = (evt, filteredAnnotations) => {
             if (!filteredAnnotations) {
                 return false;
@@ -36,6 +36,13 @@ class AnnotationTool extends AnnotationDisplayTool {
             }
             return annotationsNeedToBeRedrawn;
         };
+        if (toolProps.configuration?.getTextLines) {
+            this.configuration.getTextLines = toolProps.configuration.getTextLines;
+        }
+        if (toolProps.configuration?.statsCalculator) {
+            this.configuration.statsCalculator =
+                toolProps.configuration.statsCalculator;
+        }
     }
     getHandleNearImagePoint(element, annotation, canvasCoords, proximity) {
         const enabledElement = getEnabledElement(element);