npm - @cornerstonejs/tools - Versions diffs - 1.12.1 → 1.13.0 - Mend

@cornerstonejs/tools 1.12.1 → 1.13.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (136) hide show

package/dist/cjs/tools/annotation/LengthTool.js CHANGED Viewed

@@ -48,6 +48,7 @@ class LengthTool extends base_1.AnnotationTool {
         supportedInteractionTypes: ['Mouse', 'Touch'],
         configuration: {
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -346,7 +347,7 @@ class LengthTool extends base_1.AnnotationTool {
                     console.warn('Rendering Engine has been destroyed');
                     return renderStatus;
                 }
-                const textLines = this._getTextLines(data, targetId);
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (!data.handles.textBox.hasMoved) {
                     const canvasTextBoxCoords = (0, drawing_1.getTextBoxCoordsCanvas)(canvasCoordinates);
                     data.handles.textBox.worldPosition =
@@ -394,15 +395,6 @@ class LengthTool extends base_1.AnnotationTool {
         (0, triggerAnnotationRenderForViewportIds_1.default)(renderingEngine, viewportIdsToRender);
         evt.preventDefault();
     }
-    _getTextLines(data, targetId) {
-        const cachedVolumeStats = data.cachedStats[targetId];
-        const { length, unit } = cachedVolumeStats;
-        if (length === undefined || length === null || isNaN(length)) {
-            return;
-        }
-        const textLines = [`${(0, roundNumber_1.default)(length)} ${unit}`];
-        return textLines;
-    }
     _calculateLength(pos1, pos2) {
         const dx = pos1[0] - pos2[0];
         const dy = pos1[1] - pos2[1];
@@ -450,6 +442,15 @@ class LengthTool extends base_1.AnnotationTool {
             core_1.utilities.indexWithinDimensions(index2, dimensions));
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { length, unit } = cachedVolumeStats;
+    if (length === undefined || length === null || isNaN(length)) {
+        return;
+    }
+    const textLines = [`${(0, roundNumber_1.default)(length)} ${unit}`];
+    return textLines;
+}
 LengthTool.toolName = 'Length';
 exports.default = LengthTool;
 //# sourceMappingURL=LengthTool.js.map

package/dist/cjs/tools/annotation/LengthTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/cjs/tools/annotation/PlanarFreehandROITool.d.ts CHANGED Viewed

@@ -36,6 +36,5 @@ declare class PlanarFreehandROITool extends AnnotationTool {
     renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
     _calculateCachedStats: (annotation: any, viewport: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: ModalityUnitOptions) => any;
     _renderStats: (annotation: any, viewport: any, enabledElement: any, svgDrawingHelper: any) => void;
-    _getTextLines: (data: any, targetId: string) => string[];
 }
 export default PlanarFreehandROITool;

package/dist/cjs/tools/annotation/PlanarFreehandROITool.js CHANGED Viewed

@@ -27,6 +27,7 @@ const getIntersectionWithPolyline_1 = require("../../utilities/math/polyline/get
 const pointInShapeCallback_1 = __importDefault(require("../../utilities/pointInShapeCallback"));
 const isViewportPreScaled_1 = require("../../utilities/viewport/isViewportPreScaled");
 const getModalityUnit_1 = require("../../utilities/getModalityUnit");
+const basic_1 = require("../../utilities/math/basic");
 const { pointCanProjectOnLine } = math_1.polyline;
 const { EPSILON } = core_1.CONSTANTS;
 const PARALLEL_THRESHOLD = 1 - EPSILON;
@@ -51,6 +52,8 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 knotsRatioPercentageOnEdit: 40,
             },
             calculateStats: false,
+            getTextLines: defaultGetTextLines,
+            statsCalculator: basic_1.BasicStatsCalculator,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -258,6 +261,7 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
             return renderStatus;
         };
         this._calculateCachedStats = (annotation, viewport, renderingEngine, enabledElement, modalityUnitOptions) => {
+            var _a, _b, _c;
             const data = annotation.data;
             const { cachedStats, polyline: points } = data;
             const targetIds = Object.keys(cachedStats);
@@ -309,22 +313,10 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 ];
                 const worldPosEnd = imageData.indexToWorld([iMax, jMax, kMax]);
                 const canvasPosEnd = viewport.worldToCanvas(worldPosEnd);
-                let count = 0;
-                let sum = 0;
-                let sumSquares = 0;
-                let max = -Infinity;
-                const statCalculator = ({ value: newValue }) => {
-                    if (newValue > max) {
-                        max = newValue;
-                    }
-                    sum += newValue;
-                    sumSquares += Math.pow(newValue, 2);
-                    count += 1;
-                };
                 let curRow = 0;
                 let intersections = [];
                 let intersectionCounter = 0;
-                (0, pointInShapeCallback_1.default)(imageData, (pointLPS, pointIJK) => {
+                const pointsInShape = (0, pointInShapeCallback_1.default)(imageData, (pointLPS, pointIJK) => {
                     let result = true;
                     const point = viewport.worldToCanvas(pointLPS);
                     if (point[1] != curRow) {
@@ -349,17 +341,17 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                         result = false;
                     }
                     return result;
-                }, statCalculator, boundsIJK);
-                const mean = sum / count;
-                let stdDev = sumSquares / count - Math.pow(mean, 2);
-                stdDev = Math.sqrt(stdDev);
+                }, this.configuration.statsCalculator.statsCallback, boundsIJK);
                 const modalityUnit = (0, getModalityUnit_1.getModalityUnit)(metadata.Modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                const stats = this.configuration.statsCalculator.getStatistics();
                 cachedStats[targetId] = {
                     Modality: metadata.Modality,
                     area,
-                    mean,
-                    max,
-                    stdDev,
+                    mean: (_a = stats[1]) === null || _a === void 0 ? void 0 : _a.value,
+                    max: (_b = stats[0]) === null || _b === void 0 ? void 0 : _b.value,
+                    stdDev: (_c = stats[3]) === null || _c === void 0 ? void 0 : _c.value,
+                    statsArray: stats,
+                    pointsInShape: pointsInShape,
                     areaUnit: (0, getCalibratedUnits_1.getCalibratedAreaUnits)(null, image),
                     modalityUnit,
                 };
@@ -372,7 +364,7 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
             var _a;
             const data = annotation.data;
             const targetId = this.getTargetId(viewport);
-            const textLines = this._getTextLines(data, targetId);
+            const textLines = this.configuration.getTextLines(data, targetId);
             if (!textLines || textLines.length === 0) {
                 return;
             }
@@ -398,27 +390,6 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
                 bottomRight: viewport.canvasToWorld([left + width, top + height]),
             };
         };
-        this._getTextLines = (data, targetId) => {
-            const cachedVolumeStats = data.cachedStats[targetId];
-            const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
-            const textLines = [];
-            if (area) {
-                const areaLine = isEmptyArea
-                    ? `Area: Oblique not supported`
-                    : `Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`;
-                textLines.push(areaLine);
-            }
-            if (mean) {
-                textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
-            }
-            if (max) {
-                textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
-            }
-            if (stdDev) {
-                textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
-            }
-            return textLines;
-        };
         (0, drawLoop_1.default)(this);
         (0, editLoopCommon_1.default)(this);
         (0, closedContourEditLoop_1.default)(this);
@@ -477,6 +448,27 @@ class PlanarFreehandROITool extends base_1.AnnotationTool {
         return annotationsWithinSlice;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { area, mean, stdDev, max, isEmptyArea, areaUnit, modalityUnit } = cachedVolumeStats;
+    const textLines = [];
+    if (area) {
+        const areaLine = isEmptyArea
+            ? `Area: Oblique not supported`
+            : `Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`;
+        textLines.push(areaLine);
+    }
+    if (mean) {
+        textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
+    }
+    if (max) {
+        textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
+    }
+    if (stdDev) {
+        textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
+    }
+    return textLines;
+}
 PlanarFreehandROITool.toolName = 'PlanarFreehandROI';
 exports.default = PlanarFreehandROITool;
 //# sourceMappingURL=PlanarFreehandROITool.js.map

package/dist/cjs/tools/annotation/PlanarFreehandROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/cjs/tools/annotation/ProbeTool.d.ts CHANGED Viewed

@@ -30,7 +30,6 @@ declare class ProbeTool extends AnnotationTool {
     _activateModify: (element: any) => void;
     _deactivateModify: (element: any) => void;
     renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: SVGDrawingHelper) => boolean;
-    _getTextLines(data: any, targetId: string): string[] | undefined;
     _calculateCachedStats(annotation: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: ModalityUnitOptions): any;
 }
 export default ProbeTool;

package/dist/cjs/tools/annotation/ProbeTool.js CHANGED Viewed

@@ -22,6 +22,7 @@ class ProbeTool extends base_1.AnnotationTool {
         configuration: {
             shadow: true,
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -213,7 +214,7 @@ class ProbeTool extends base_1.AnnotationTool {
                 const handleGroupUID = '0';
                 (0, drawingSvg_1.drawHandles)(svgDrawingHelper, annotationUID, handleGroupUID, [canvasCoordinates], { color });
                 renderStatus = true;
-                const textLines = this._getTextLines(data, targetId);
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (textLines) {
                     const textCanvasCoordinates = [
                         canvasCoordinates[0] + 6,
@@ -257,17 +258,6 @@ class ProbeTool extends base_1.AnnotationTool {
         (0, triggerAnnotationRenderForViewportIds_1.default)(renderingEngine, viewportIdsToRender);
         evt.preventDefault();
     }
-    _getTextLines(data, targetId) {
-        const cachedVolumeStats = data.cachedStats[targetId];
-        const { index, value, modalityUnit } = cachedVolumeStats;
-        if (value === undefined) {
-            return;
-        }
-        const textLines = [];
-        textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
-        textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
-        return textLines;
-    }
     _calculateCachedStats(annotation, renderingEngine, enabledElement, modalityUnitOptions) {
         const data = annotation.data;
         const { viewportId, renderingEngineId } = enabledElement;
@@ -326,6 +316,17 @@ class ProbeTool extends base_1.AnnotationTool {
         return cachedStats;
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { index, value, modalityUnit } = cachedVolumeStats;
+    if (value === undefined) {
+        return;
+    }
+    const textLines = [];
+    textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
+    textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
+    return textLines;
+}
 ProbeTool.toolName = 'Probe';
 exports.default = ProbeTool;
 //# sourceMappingURL=ProbeTool.js.map

package/dist/cjs/tools/annotation/ProbeTool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/cjs/tools/annotation/RectangleROITool.d.ts CHANGED Viewed

@@ -34,7 +34,6 @@ declare class RectangleROITool extends AnnotationTool {
         width: number;
         height: number;
     };
-    _getTextLines: (data: any, targetId: string) => string[] | undefined;
     _calculateCachedStats: (annotation: any, viewPlaneNormal: any, viewUp: any, renderingEngine: any, enabledElement: any, modalityUnitOptions: any) => any;
     _isInsideVolume: (index1: any, index2: any, dimensions: any) => boolean;
 }

package/dist/cjs/tools/annotation/RectangleROITool.js CHANGED Viewed

@@ -45,6 +45,8 @@ const elementCursor_1 = require("../../cursors/elementCursor");
 const triggerAnnotationRenderForViewportIds_1 = __importDefault(require("../../utilities/triggerAnnotationRenderForViewportIds"));
 const getModalityUnit_1 = require("../../utilities/getModalityUnit");
 const isViewportPreScaled_1 = require("../../utilities/viewport/isViewportPreScaled");
+const utilities_1 = require("../../utilities/");
+const basic_1 = require("../../utilities/math/basic");
 const { transformWorldToIndex } = core_1.utilities;
 class RectangleROITool extends base_1.AnnotationTool {
     constructor(toolProps = {}, defaultToolProps = {
@@ -52,6 +54,8 @@ class RectangleROITool extends base_1.AnnotationTool {
         configuration: {
             shadow: true,
             preventHandleOutsideImage: false,
+            getTextLines: defaultGetTextLines,
+            statsCalculator: basic_1.BasicStatsCalculator,
         },
     }) {
         super(toolProps, defaultToolProps);
@@ -441,7 +445,7 @@ class RectangleROITool extends base_1.AnnotationTool {
                     lineWidth,
                 }, dataId);
                 renderStatus = true;
-                const textLines = this._getTextLines(data, targetId);
+                const textLines = this.configuration.getTextLines(data, targetId);
                 if (!textLines || textLines.length === 0) {
                     continue;
                 }
@@ -472,20 +476,8 @@ class RectangleROITool extends base_1.AnnotationTool {
                 height: Math.abs(point0[1] - point1[1]),
             };
         };
-        this._getTextLines = (data, targetId) => {
-            const cachedVolumeStats = data.cachedStats[targetId];
-            const { area, mean, max, stdDev, areaUnit, modalityUnit } = cachedVolumeStats;
-            if (mean === undefined) {
-                return;
-            }
-            const textLines = [];
-            textLines.push(`Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`);
-            textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
-            textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
-            textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
-            return textLines;
-        };
         this._calculateCachedStats = (annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement, modalityUnitOptions) => {
+            var _a, _b, _c;
             const { data } = annotation;
             const { viewportId, renderingEngineId } = enabledElement;
             const worldPos1 = data.handles.points[0];
@@ -516,46 +508,25 @@ class RectangleROITool extends base_1.AnnotationTool {
                     const jMax = Math.max(worldPos1Index[1], worldPos2Index[1]);
                     const kMin = Math.min(worldPos1Index[2], worldPos2Index[2]);
                     const kMax = Math.max(worldPos1Index[2], worldPos2Index[2]);
+                    const boundsIJK = [
+                        [iMin, iMax],
+                        [jMin, jMax],
+                        [kMin, kMax],
+                    ];
                     const { worldWidth, worldHeight } = (0, getWorldWidthAndHeightFromCorners_1.default)(viewPlaneNormal, viewUp, worldPos1, worldPos2);
                     const scale = (0, getCalibratedUnits_1.getCalibratedScale)(image);
                     const area = Math.abs(worldWidth * worldHeight) / (scale * scale);
-                    let count = 0;
-                    let mean = 0;
-                    let stdDev = 0;
-                    let max = -Infinity;
-                    const yMultiple = dimensions[0];
-                    const zMultiple = dimensions[0] * dimensions[1];
-                    for (let k = kMin; k <= kMax; k++) {
-                        for (let j = jMin; j <= jMax; j++) {
-                            for (let i = iMin; i <= iMax; i++) {
-                                const value = scalarData[k * zMultiple + j * yMultiple + i];
-                                if (value > max) {
-                                    max = value;
-                                }
-                                count++;
-                                mean += value;
-                            }
-                        }
-                    }
-                    mean /= count;
-                    for (let k = kMin; k <= kMax; k++) {
-                        for (let j = jMin; j <= jMax; j++) {
-                            for (let i = iMin; i <= iMax; i++) {
-                                const value = scalarData[k * zMultiple + j * yMultiple + i];
-                                const valueMinusMean = value - mean;
-                                stdDev += valueMinusMean * valueMinusMean;
-                            }
-                        }
-                    }
-                    stdDev /= count;
-                    stdDev = Math.sqrt(stdDev);
                     const modalityUnit = (0, getModalityUnit_1.getModalityUnit)(metadata.Modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                    const pointsInShape = (0, utilities_1.pointInShapeCallback)(imageData, () => true, this.configuration.statsCalculator.statsCallback, boundsIJK);
+                    const stats = this.configuration.statsCalculator.getStatistics();
                     cachedStats[targetId] = {
                         Modality: metadata.Modality,
                         area,
-                        mean,
-                        stdDev,
-                        max,
+                        mean: (_a = stats[1]) === null || _a === void 0 ? void 0 : _a.value,
+                        stdDev: (_b = stats[2]) === null || _b === void 0 ? void 0 : _b.value,
+                        max: (_c = stats[0]) === null || _c === void 0 ? void 0 : _c.value,
+                        statsArray: stats,
+                        pointsInShape: pointsInShape,
                         areaUnit: (0, getCalibratedUnits_1.getCalibratedAreaUnits)(null, image),
                         modalityUnit,
                     };
@@ -584,6 +555,19 @@ class RectangleROITool extends base_1.AnnotationTool {
         this._throttledCalculateCachedStats = (0, throttle_1.default)(this._calculateCachedStats, 100, { trailing: true });
     }
 }
+function defaultGetTextLines(data, targetId) {
+    const cachedVolumeStats = data.cachedStats[targetId];
+    const { area, mean, max, stdDev, areaUnit, modalityUnit } = cachedVolumeStats;
+    if (mean === undefined) {
+        return;
+    }
+    const textLines = [];
+    textLines.push(`Area: ${(0, roundNumber_1.default)(area)} ${areaUnit}`);
+    textLines.push(`Mean: ${(0, roundNumber_1.default)(mean)} ${modalityUnit}`);
+    textLines.push(`Max: ${(0, roundNumber_1.default)(max)} ${modalityUnit}`);
+    textLines.push(`Std Dev: ${(0, roundNumber_1.default)(stdDev)} ${modalityUnit}`);
+    return textLines;
+}
 RectangleROITool.toolName = 'RectangleROI';
 exports.default = RectangleROITool;
 //# sourceMappingURL=RectangleROITool.js.map