@cornerstonejs/tools 0.17.3 → 0.18.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/enums/Events.d.ts +1 -0
- package/dist/cjs/enums/Events.js +1 -0
- package/dist/cjs/enums/Events.js.map +1 -1
- package/dist/cjs/eventListeners/segmentation/segmentationRepresentationRemovedEventListener.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/SegmentationStateManager.d.ts +1 -0
- package/dist/cjs/stateManagement/segmentation/SegmentationStateManager.js +3 -0
- package/dist/cjs/stateManagement/segmentation/SegmentationStateManager.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/helpers/normalizeSegmentationInput.js +1 -1
- package/dist/cjs/stateManagement/segmentation/helpers/normalizeSegmentationInput.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/segmentationState.d.ts +2 -1
- package/dist/cjs/stateManagement/segmentation/segmentationState.js +7 -1
- package/dist/cjs/stateManagement/segmentation/segmentationState.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/triggerSegmentationEvents.d.ts +2 -1
- package/dist/cjs/stateManagement/segmentation/triggerSegmentationEvents.js +8 -1
- package/dist/cjs/stateManagement/segmentation/triggerSegmentationEvents.js.map +1 -1
- package/dist/cjs/store/ToolGroupManager/ToolGroup.d.ts +2 -0
- package/dist/cjs/store/ToolGroupManager/ToolGroup.js +9 -2
- package/dist/cjs/store/ToolGroupManager/ToolGroup.js.map +1 -1
- package/dist/cjs/synchronizers/callbacks/voiSyncCallback.js +16 -6
- package/dist/cjs/synchronizers/callbacks/voiSyncCallback.js.map +1 -1
- package/dist/cjs/tools/CrosshairsTool.js +6 -5
- package/dist/cjs/tools/CrosshairsTool.js.map +1 -1
- package/dist/cjs/tools/annotation/PlanarFreehandROITool.js +4 -0
- package/dist/cjs/tools/annotation/PlanarFreehandROITool.js.map +1 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/renderMethods.js +20 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/renderMethods.js.map +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js +5 -2
- package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/eraseRectangle.js +2 -2
- package/dist/cjs/tools/segmentation/strategies/eraseRectangle.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillCircle.js +2 -2
- package/dist/cjs/tools/segmentation/strategies/fillCircle.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillRectangle.js +2 -2
- package/dist/cjs/tools/segmentation/strategies/fillRectangle.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillSphere.js +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillSphere.js.map +1 -1
- package/dist/cjs/types/BoundsIJK.d.ts +3 -0
- package/dist/cjs/types/BoundsIJK.js +3 -0
- package/dist/cjs/types/BoundsIJK.js.map +1 -0
- package/dist/cjs/types/EventTypes.d.ts +5 -1
- package/dist/cjs/types/index.d.ts +2 -1
- package/dist/cjs/utilities/{segmentation/getBoundingBoxUtils.d.ts → boundingBox/extend2DBoundingBoxInViewAxis.d.ts} +1 -2
- package/dist/cjs/utilities/boundingBox/extend2DBoundingBoxInViewAxis.js +13 -0
- package/dist/cjs/utilities/boundingBox/extend2DBoundingBoxInViewAxis.js.map +1 -0
- package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.d.ts +3 -0
- package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.js +40 -0
- package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.js.map +1 -0
- package/dist/cjs/utilities/boundingBox/index.d.ts +3 -0
- package/dist/cjs/utilities/boundingBox/index.js +11 -0
- package/dist/cjs/utilities/boundingBox/index.js.map +1 -0
- package/dist/cjs/utilities/index.d.ts +3 -1
- package/dist/cjs/utilities/index.js +5 -1
- package/dist/cjs/utilities/index.js.map +1 -1
- package/dist/cjs/utilities/pointInShapeCallback.d.ts +1 -2
- package/dist/cjs/utilities/pointInShapeCallback.js.map +1 -1
- package/dist/cjs/utilities/pointInSurroundingSphereCallback.d.ts +1 -1
- package/dist/cjs/utilities/pointInSurroundingSphereCallback.js +42 -12
- package/dist/cjs/utilities/pointInSurroundingSphereCallback.js.map +1 -1
- package/dist/cjs/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.d.ts +5 -0
- package/dist/cjs/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.js +51 -0
- package/dist/cjs/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.js.map +1 -0
- package/dist/cjs/utilities/rectangleROITool/index.d.ts +2 -0
- package/dist/cjs/utilities/rectangleROITool/index.js +9 -0
- package/dist/cjs/utilities/rectangleROITool/index.js.map +1 -0
- package/dist/cjs/utilities/segmentation/index.d.ts +2 -2
- package/dist/cjs/utilities/segmentation/index.js +3 -4
- package/dist/cjs/utilities/segmentation/index.js.map +1 -1
- package/dist/cjs/utilities/segmentation/rectangleROIThresholdVolumeByRange.d.ts +19 -0
- package/dist/cjs/utilities/segmentation/rectangleROIThresholdVolumeByRange.js +42 -0
- package/dist/cjs/utilities/segmentation/rectangleROIThresholdVolumeByRange.js.map +1 -0
- package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.d.ts +5 -19
- package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.js +13 -69
- package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.js.map +1 -1
- package/dist/esm/enums/Events.d.ts +1 -0
- package/dist/esm/enums/Events.js +1 -0
- package/dist/esm/enums/Events.js.map +1 -1
- package/dist/esm/eventListeners/segmentation/segmentationRepresentationRemovedEventListener.js.map +1 -1
- package/dist/esm/stateManagement/segmentation/SegmentationStateManager.d.ts +1 -0
- package/dist/esm/stateManagement/segmentation/SegmentationStateManager.js +3 -0
- package/dist/esm/stateManagement/segmentation/SegmentationStateManager.js.map +1 -1
- package/dist/esm/stateManagement/segmentation/helpers/normalizeSegmentationInput.js +1 -1
- package/dist/esm/stateManagement/segmentation/helpers/normalizeSegmentationInput.js.map +1 -1
- package/dist/esm/stateManagement/segmentation/segmentationState.d.ts +2 -1
- package/dist/esm/stateManagement/segmentation/segmentationState.js +7 -2
- package/dist/esm/stateManagement/segmentation/segmentationState.js.map +1 -1
- package/dist/esm/stateManagement/segmentation/triggerSegmentationEvents.d.ts +2 -1
- package/dist/esm/stateManagement/segmentation/triggerSegmentationEvents.js +7 -1
- package/dist/esm/stateManagement/segmentation/triggerSegmentationEvents.js.map +1 -1
- package/dist/esm/store/ToolGroupManager/ToolGroup.d.ts +2 -0
- package/dist/esm/store/ToolGroupManager/ToolGroup.js +9 -2
- package/dist/esm/store/ToolGroupManager/ToolGroup.js.map +1 -1
- package/dist/esm/synchronizers/callbacks/voiSyncCallback.js +17 -7
- package/dist/esm/synchronizers/callbacks/voiSyncCallback.js.map +1 -1
- package/dist/esm/tools/CrosshairsTool.js +6 -5
- package/dist/esm/tools/CrosshairsTool.js.map +1 -1
- package/dist/esm/tools/annotation/PlanarFreehandROITool.js +4 -0
- package/dist/esm/tools/annotation/PlanarFreehandROITool.js.map +1 -1
- package/dist/esm/tools/annotation/planarFreehandROITool/renderMethods.js +19 -1
- package/dist/esm/tools/annotation/planarFreehandROITool/renderMethods.js.map +1 -1
- package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.js +5 -2
- package/dist/esm/tools/displayTools/Labelmap/addLabelmapToElement.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/eraseRectangle.js +1 -1
- package/dist/esm/tools/segmentation/strategies/eraseRectangle.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/fillCircle.js +1 -1
- package/dist/esm/tools/segmentation/strategies/fillCircle.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/fillRectangle.js +1 -1
- package/dist/esm/tools/segmentation/strategies/fillRectangle.js.map +1 -1
- package/dist/esm/tools/segmentation/strategies/fillSphere.js +1 -1
- package/dist/esm/tools/segmentation/strategies/fillSphere.js.map +1 -1
- package/dist/esm/types/BoundsIJK.d.ts +3 -0
- package/dist/esm/types/BoundsIJK.js +2 -0
- package/dist/esm/types/BoundsIJK.js.map +1 -0
- package/dist/esm/types/EventTypes.d.ts +5 -1
- package/dist/esm/types/index.d.ts +2 -1
- package/dist/esm/utilities/{segmentation/getBoundingBoxUtils.d.ts → boundingBox/extend2DBoundingBoxInViewAxis.d.ts} +1 -2
- package/dist/esm/utilities/boundingBox/extend2DBoundingBoxInViewAxis.js +11 -0
- package/dist/esm/utilities/boundingBox/extend2DBoundingBoxInViewAxis.js.map +1 -0
- package/dist/esm/utilities/boundingBox/getBoundingBoxAroundShape.d.ts +3 -0
- package/dist/esm/utilities/boundingBox/getBoundingBoxAroundShape.js +38 -0
- package/dist/esm/utilities/boundingBox/getBoundingBoxAroundShape.js.map +1 -0
- package/dist/esm/utilities/boundingBox/index.d.ts +3 -0
- package/dist/esm/utilities/boundingBox/index.js +4 -0
- package/dist/esm/utilities/boundingBox/index.js.map +1 -0
- package/dist/esm/utilities/index.d.ts +3 -1
- package/dist/esm/utilities/index.js +3 -1
- package/dist/esm/utilities/index.js.map +1 -1
- package/dist/esm/utilities/pointInShapeCallback.d.ts +1 -2
- package/dist/esm/utilities/pointInShapeCallback.js.map +1 -1
- package/dist/esm/utilities/pointInSurroundingSphereCallback.d.ts +1 -1
- package/dist/esm/utilities/pointInSurroundingSphereCallback.js +40 -10
- package/dist/esm/utilities/pointInSurroundingSphereCallback.js.map +1 -1
- package/dist/esm/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.d.ts +5 -0
- package/dist/esm/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.js +45 -0
- package/dist/esm/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.js.map +1 -0
- package/dist/esm/utilities/rectangleROITool/index.d.ts +2 -0
- package/dist/esm/utilities/rectangleROITool/index.js +3 -0
- package/dist/esm/utilities/rectangleROITool/index.js.map +1 -0
- package/dist/esm/utilities/segmentation/index.d.ts +2 -2
- package/dist/esm/utilities/segmentation/index.js +2 -2
- package/dist/esm/utilities/segmentation/index.js.map +1 -1
- package/dist/esm/utilities/segmentation/rectangleROIThresholdVolumeByRange.d.ts +19 -0
- package/dist/esm/utilities/segmentation/rectangleROIThresholdVolumeByRange.js +37 -0
- package/dist/esm/utilities/segmentation/rectangleROIThresholdVolumeByRange.js.map +1 -0
- package/dist/esm/utilities/segmentation/thresholdVolumeByRange.d.ts +5 -19
- package/dist/esm/utilities/segmentation/thresholdVolumeByRange.js +13 -47
- package/dist/esm/utilities/segmentation/thresholdVolumeByRange.js.map +1 -1
- package/dist/umd/index.js +1 -1
- package/dist/umd/index.js.map +1 -1
- package/package.json +4 -4
- package/dist/cjs/utilities/segmentation/getBoundingBoxUtils.js +0 -51
- package/dist/cjs/utilities/segmentation/getBoundingBoxUtils.js.map +0 -1
- package/dist/esm/utilities/segmentation/getBoundingBoxUtils.js +0 -47
- package/dist/esm/utilities/segmentation/getBoundingBoxUtils.js.map +0 -1
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function getBoundingBoxAroundShape(points, dimensions) {
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let xMin = Infinity;
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let xMax = 0;
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let yMin = Infinity;
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let yMax = 0;
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let zMin = Infinity;
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let zMax = 0;
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points.forEach((p) => {
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xMin = Math.min(p[0], xMin);
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xMax = Math.max(p[0], xMax);
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yMin = Math.min(p[1], yMin);
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yMax = Math.max(p[1], yMax);
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zMin = Math.min(p[2], zMin);
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zMax = Math.max(p[2], zMax);
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});
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xMin = Math.floor(xMin);
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xMax = Math.floor(xMax);
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yMin = Math.floor(yMin);
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yMax = Math.floor(yMax);
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zMin = Math.floor(zMin);
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zMax = Math.floor(zMax);
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if (dimensions) {
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const [width, height, depth] = dimensions;
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xMin = Math.max(0, xMin);
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xMax = Math.min(width - 1, xMax);
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yMin = Math.max(0, yMin);
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yMax = Math.min(height - 1, yMax);
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zMin = Math.max(0, zMin);
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zMax = Math.min(depth - 1, zMax);
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}
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return [
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[xMin, xMax],
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[yMin, yMax],
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[zMin, zMax],
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];
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}
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export default getBoundingBoxAroundShape;
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//# sourceMappingURL=getBoundingBoxAroundShape.js.map
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/boundingBox/index.ts"],"names":[],"mappings":"AAAA,OAAO,6BAA6B,MAAM,iCAAiC,CAAC;AAC5E,OAAO,yBAAyB,MAAM,6BAA6B,CAAC;AAEpE,OAAO,EAAE,6BAA6B,EAAE,yBAAyB,EAAE,CAAC"}
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import * as orientation from './orientation';
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import * as cine from './cine';
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import * as boundingBox from './boundingBox';
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import * as rectangleROITool from './rectangleROITool';
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import { triggerEvent } from '@cornerstonejs/core';
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export { math, planar, viewportFilters, stackScrollTool, drawing, debounce, deepMerge, throttle, orientation, isObject, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, cine, clip, };
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export { math, planar, viewportFilters, stackScrollTool, drawing, debounce, deepMerge, throttle, orientation, isObject, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, cine, clip, boundingBox, rectangleROITool, };
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import * as boundingBox from './boundingBox';
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import * as rectangleROITool from './rectangleROITool';
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export { math, planar, viewportFilters, stackScrollTool, drawing, debounce, deepMerge, throttle, orientation, isObject, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, cine, clip, };
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export { math, planar, viewportFilters, stackScrollTool, drawing, debounce, deepMerge, throttle, orientation, isObject, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, cine, clip, boundingBox, rectangleROITool, };
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//# sourceMappingURL=index.js.map
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/utilities/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,sBAAsB,EACtB,sCAAsC,GACvC,MAAM,0BAA0B,CAAC;AAGlC,OAAO,QAAQ,MAAM,YAAY,CAAC;AAClC,OAAO,SAAS,MAAM,aAAa,CAAC;AACpC,OAAO,QAAQ,MAAM,YAAY,CAAC;AAClC,OAAO,QAAQ,MAAM,YAAY,CAAC;AAClC,OAAO,IAAI,MAAM,QAAQ,CAAC;AAC1B,OAAO,qBAAqB,MAAM,yBAAyB,CAAC;AAC5D,OAAO,qCAAqC,MAAM,yCAAyC,CAAC;AAC5F,OAAO,WAAW,MAAM,wBAAwB,CAAC;AAEjD,OAAO,oBAAoB,MAAM,wBAAwB,CAAC;AAC1D,OAAO,gCAAgC,MAAM,oCAAoC,CAAC;AAGlF,OAAO,KAAK,YAAY,MAAM,gBAAgB,CAAC;AAC/C,OAAO,KAAK,OAAO,MAAM,WAAW,CAAC;AACrC,OAAO,KAAK,IAAI,MAAM,QAAQ,CAAC;AAC/B,OAAO,KAAK,MAAM,MAAM,UAAU,CAAC;AACnC,OAAO,KAAK,eAAe,MAAM,mBAAmB,CAAC;AACrD,OAAO,KAAK,eAAe,MAAM,mBAAmB,CAAC;AACrD,OAAO,KAAK,WAAW,MAAM,eAAe,CAAC;AAC7C,OAAO,KAAK,IAAI,MAAM,QAAQ,CAAC;AAC/B,OAAO,KAAK,WAAW,MAAM,eAAe,CAAC;AAC7C,OAAO,KAAK,gBAAgB,MAAM,oBAAoB,CAAC;AAGvD,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAEnD,OAAO,EACL,IAAI,EACJ,MAAM,EACN,eAAe,EACf,eAAe,EACf,OAAO,EACP,QAAQ,EACR,SAAS,EACT,QAAQ,EACR,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,qBAAqB,EACrB,YAAY,EACZ,qCAAqC,EACrC,oBAAoB,EACpB,gCAAgC,EAChC,sBAAsB,EACtB,sCAAsC,EACtC,WAAW,EACX,IAAI,EACJ,IAAI,EACJ,WAAW,EACX,gBAAgB,GACjB,CAAC"}
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@@ -1,5 +1,6 @@
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1
1
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import type { Types } from '@cornerstonejs/core';
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2
2
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import type { vtkImageData } from '@kitware/vtk.js/Common/DataModel/ImageData';
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3
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+
import BoundsIJK from '../types/BoundsIJK';
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3
4
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export declare type PointInShapeCallback = ({ value, index, pointIJK, pointLPS, }: {
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value: number;
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index: number;
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@@ -7,6 +8,4 @@ export declare type PointInShapeCallback = ({ value, index, pointIJK, pointLPS,
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pointLPS: Types.Point3;
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}) => void;
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export declare type ShapeFnCriteria = (pointIJK: Types.Point3, pointLPS: Types.Point3) => boolean;
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-
declare type BoundsIJK = [Types.Point2, Types.Point2, Types.Point2];
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export default function pointInShapeCallback(imageData: vtkImageData | Types.CPUImageData, pointInShapeFn: ShapeFnCriteria, callback: PointInShapeCallback, boundsIJK?: BoundsIJK): void;
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-
export {};
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"pointInShapeCallback.js","sourceRoot":"","sources":["../../../src/utilities/pointInShapeCallback.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;
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1
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+
{"version":3,"file":"pointInShapeCallback.js","sourceRoot":"","sources":["../../../src/utilities/pointInShapeCallback.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAoCjC,MAAM,CAAC,OAAO,UAAU,oBAAoB,CAC1C,SAA4C,EAC5C,cAA+B,EAC/B,QAA8B,EAC9B,SAAqB;IAErB,IAAI,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;IAEvC,IAAI,UAAU,CAAC;IAGf,IAAK,SAAgC,CAAC,aAAa,EAAE;QACnD,UAAU,GAAI,SAAgC,CAAC,aAAa,EAAE,CAAC;KAChE;SAAM;QACL,UAAU,GAAI,SAA0B;aACrC,YAAY,EAAE;aACd,UAAU,EAAE;aACZ,OAAO,EAAE,CAAC;KACd;IAED,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAE,CAAC;IAE7C,IAAI,CAAC,SAAS,EAAE;QACd,IAAI,GAAG,CAAC,CAAC;QACT,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QACrB,IAAI,GAAG,CAAC,CAAC;QACT,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;QACrB,IAAI,GAAG,CAAC,CAAC;QACT,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;KACtB;SAAM;QACL,CAAC,CAAC,IAAI,EAAE,IAAI,CAAC,EAAE,CAAC,IAAI,EAAE,IAAI,CAAC,EAAE,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,GAAG,SAAS,CAAC;KACxD;IAED,MAAM,KAAK,GAAG,IAAI,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;IAEhD,MAAM,SAAS,GAAG,SAAS,CAAC,YAAY,EAAE,CAAC;IAC3C,MAAM,UAAU,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IACzC,MAAM,aAAa,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAC5C,MAAM,cAAc,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAE7C,MAAM,OAAO,GAAG,SAAS,CAAC,UAAU,EAAE,CAAC;IACvC,MAAM,CAAC,UAAU,EAAE,aAAa,EAAE,eAAe,CAAC,GAAG,OAAO,CAAC;IAG7D,MAAM,aAAa,GAAG,SAAS,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC;IAEpD,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAC7B,UAAU,CAAC,CAAC,CAAC,GAAG,UAAU,EAC1B,UAAU,CAAC,CAAC,CAAC,GAAG,UAAU,EAC1B,UAAU,CAAC,CAAC,CAAC,GAAG,UAAU,CAC3B,CAAC;IAEF,MAAM,UAAU,GAAG,IAAI,CAAC,UAAU,CAChC,aAAa,CAAC,CAAC,CAAC,GAAG,aAAa,EAChC,aAAa,CAAC,CAAC,CAAC,GAAG,aAAa,EAChC,aAAa,CAAC,CAAC,CAAC,GAAG,aAAa,CACjC,CAAC;IAEF,MAAM,YAAY,GAAG,IAAI,CAAC,UAAU,CAClC,cAAc,CAAC,CAAC,CAAC,GAAG,eAAe,EACnC,cAAc,CAAC,CAAC,CAAC,GAAG,eAAe,EACnC,cAAc,CAAC,CAAC,CAAC,GAAG,eAAe,CACpC,CAAC;IAEF,MAAM,SAAS,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;IAChC,MAAM,SAAS,GAAG,UAAU,CAAC,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;IAEhD,KAAK,IAAI,CAAC,GAAG,IAAI,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC,EAAE,EAAE;QACjC,KAAK,IAAI,CAAC,GAAG,IAAI,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC,EAAE,EAAE;YACjC,KAAK,IAAI,CAAC,GAAG,IAAI,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC,EAAE,EAAE;gBACjC,MAAM,QAAQ,GAAiB,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;gBACzC,MAAM,EAAE,GAAG,CAAC,GAAG,IAAI,CAAC;gBACpB,MAAM,EAAE,GAAG,CAAC,GAAG,IAAI,CAAC;gBACpB,MAAM,EAAE,GAAG,CAAC,GAAG,IAAI,CAAC;gBAEpB,MAAM,UAAU,GAAG,aAAa,CAAC;gBAEjC,MAAM,QAAQ,GAAiB;oBAC7B,UAAU,CAAC,CAAC,CAAC;wBACX,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC;wBACf,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC;wBAClB,EAAE,GAAG,YAAY,CAAC,CAAC,CAAC;oBACtB,UAAU,CAAC,CAAC,CAAC;wBACX,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC;wBACf,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC;wBAClB,EAAE,GAAG,YAAY,CAAC,CAAC,CAAC;oBACtB,UAAU,CAAC,CAAC,CAAC;wBACX,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC;wBACf,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC;wBAClB,EAAE,GAAG,YAAY,CAAC,CAAC,CAAC;iBACvB,CAAC;gBAEF,IAAI,cAAc,CAAC,QAAQ,EAAE,QAAQ,CAAC,EAAE;oBACtC,MAAM,KAAK,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,CAAC;oBAChD,MAAM,KAAK,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC;oBAEhC,QAAQ,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAC,CAAC;iBAChD;aACF;SACF;KACF;AACH,CAAC"}
|
|
@@ -1,4 +1,4 @@
|
|
|
1
1
|
import type { Types } from '@cornerstonejs/core';
|
|
2
2
|
import type { vtkImageData } from '@kitware/vtk.js/Common/DataModel/ImageData';
|
|
3
3
|
import { PointInShapeCallback } from './pointInShapeCallback';
|
|
4
|
-
export default function pointInSurroundingSphereCallback(
|
|
4
|
+
export default function pointInSurroundingSphereCallback(imageData: vtkImageData, circlePoints: [Types.Point3, Types.Point3], callback: PointInShapeCallback, viewport?: Types.IVolumeViewport): void;
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|
@@ -1,10 +1,47 @@
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1
1
|
import { utilities as csUtils } from '@cornerstonejs/core';
|
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2
2
|
import { vec3 } from 'gl-matrix';
|
|
3
3
|
import { pointInSphere } from './math/sphere';
|
|
4
|
-
import { getBoundingBoxAroundShape } from './segmentation/getBoundingBoxUtils';
|
|
5
4
|
import pointInShapeCallback from './pointInShapeCallback';
|
|
5
|
+
import { getBoundingBoxAroundShape } from './boundingBox';
|
|
6
6
|
const { transformWorldToIndex } = csUtils;
|
|
7
|
-
export default function pointInSurroundingSphereCallback(
|
|
7
|
+
export default function pointInSurroundingSphereCallback(imageData, circlePoints, callback, viewport) {
|
|
8
|
+
const { boundsIJK, centerWorld, radiusWorld } = _getBounds(circlePoints, imageData, viewport);
|
|
9
|
+
const sphereObj = {
|
|
10
|
+
center: centerWorld,
|
|
11
|
+
radius: radiusWorld,
|
|
12
|
+
};
|
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13
|
+
pointInShapeCallback(imageData, (pointLPS) => pointInSphere(sphereObj, pointLPS), callback, boundsIJK);
|
|
14
|
+
}
|
|
15
|
+
function _getBounds(circlePoints, imageData, viewport) {
|
|
16
|
+
const [bottom, top] = circlePoints;
|
|
17
|
+
const centerWorld = vec3.fromValues((bottom[0] + top[0]) / 2, (bottom[1] + top[1]) / 2, (bottom[2] + top[2]) / 2);
|
|
18
|
+
const radiusWorld = vec3.distance(bottom, top) / 2;
|
|
19
|
+
let boundsIJK;
|
|
20
|
+
if (!viewport) {
|
|
21
|
+
const centerIJK = transformWorldToIndex(imageData, centerWorld);
|
|
22
|
+
const spacings = imageData.getSpacing();
|
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23
|
+
const minSpacing = Math.min(...spacings);
|
|
24
|
+
const maxRadiusIJK = Math.ceil(radiusWorld / minSpacing);
|
|
25
|
+
boundsIJK = [
|
|
26
|
+
[centerIJK[0] - maxRadiusIJK, centerIJK[0] + maxRadiusIJK],
|
|
27
|
+
[centerIJK[1] - maxRadiusIJK, centerIJK[1] + maxRadiusIJK],
|
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28
|
+
[centerIJK[2] - maxRadiusIJK, centerIJK[2] + maxRadiusIJK],
|
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29
|
+
];
|
|
30
|
+
return {
|
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31
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+
boundsIJK,
|
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32
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+
centerWorld: centerWorld,
|
|
33
|
+
radiusWorld,
|
|
34
|
+
};
|
|
35
|
+
}
|
|
36
|
+
boundsIJK = _computeBoundsIJKWithCamera(imageData, viewport, circlePoints, centerWorld, radiusWorld);
|
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37
|
+
return {
|
|
38
|
+
boundsIJK,
|
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39
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+
centerWorld: centerWorld,
|
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40
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+
radiusWorld,
|
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41
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+
};
|
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42
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+
}
|
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43
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+
function _computeBoundsIJKWithCamera(imageData, viewport, circlePoints, centerWorld, radiusWorld) {
|
|
44
|
+
const [bottom, top] = circlePoints;
|
|
8
45
|
const dimensions = imageData.getDimensions();
|
|
9
46
|
const camera = viewport.getCamera();
|
|
10
47
|
const viewUp = vec3.fromValues(camera.viewUp[0], camera.viewUp[1], camera.viewUp[2]);
|
|
@@ -12,9 +49,6 @@ export default function pointInSurroundingSphereCallback(viewport, imageData, ci
|
|
|
12
49
|
let viewRight = vec3.create();
|
|
13
50
|
vec3.cross(viewRight, viewUp, viewPlaneNormal);
|
|
14
51
|
viewRight = [-viewRight[0], -viewRight[1], -viewRight[2]];
|
|
15
|
-
const [bottom, top] = circlePoints;
|
|
16
|
-
const sphereCenterWorld = vec3.fromValues((bottom[0] + top[0]) / 2, (bottom[1] + top[1]) / 2, (bottom[2] + top[2]) / 2);
|
|
17
|
-
const radiusWorld = vec3.distance(bottom, top) / 2;
|
|
18
52
|
const topLeftWorld = vec3.create();
|
|
19
53
|
const bottomRightWorld = vec3.create();
|
|
20
54
|
vec3.scaleAndAdd(topLeftWorld, top, viewPlaneNormal, radiusWorld);
|
|
@@ -26,10 +60,6 @@ export default function pointInSurroundingSphereCallback(viewport, imageData, ci
|
|
|
26
60
|
(transformWorldToIndex(imageData, bottomRightWorld)),
|
|
27
61
|
];
|
|
28
62
|
const boundsIJK = getBoundingBoxAroundShape(sphereCornersIJK, dimensions);
|
|
29
|
-
|
|
30
|
-
center: sphereCenterWorld,
|
|
31
|
-
radius: radiusWorld,
|
|
32
|
-
};
|
|
33
|
-
pointInShapeCallback(imageData, (pointLPS) => pointInSphere(sphereObj, pointLPS), callback, boundsIJK);
|
|
63
|
+
return boundsIJK;
|
|
34
64
|
}
|
|
35
65
|
//# sourceMappingURL=pointInSurroundingSphereCallback.js.map
|
|
@@ -1 +1 @@
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1
|
-
{"version":3,"file":"pointInSurroundingSphereCallback.js","sourceRoot":"","sources":["../../../src/utilities/pointInSurroundingSphereCallback.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAI3D,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,
|
|
1
|
+
{"version":3,"file":"pointInSurroundingSphereCallback.js","sourceRoot":"","sources":["../../../src/utilities/pointInSurroundingSphereCallback.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAI3D,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,oBAEN,MAAM,wBAAwB,CAAC;AAEhC,OAAO,EAAE,yBAAyB,EAAE,MAAM,eAAe,CAAC;AAE1D,MAAM,EAAE,qBAAqB,EAAE,GAAG,OAAO,CAAC;AAiB1C,MAAM,CAAC,OAAO,UAAU,gCAAgC,CACtD,SAAuB,EACvB,YAA0C,EAC1C,QAA8B,EAC9B,QAAgC;IAMhC,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,UAAU,CACxD,YAAY,EACZ,SAAS,EACT,QAAQ,CACT,CAAC;IAEF,MAAM,SAAS,GAAG;QAChB,MAAM,EAAE,WAAW;QACnB,MAAM,EAAE,WAAW;KACpB,CAAC;IAEF,oBAAoB,CAClB,SAAS,EACT,CAAC,QAAQ,EAAE,EAAE,CAAC,aAAa,CAAC,SAAS,EAAE,QAAQ,CAAC,EAChD,QAAQ,EACR,SAAS,CACV,CAAC;AACJ,CAAC;AAED,SAAS,UAAU,CACjB,YAA0C,EAC1C,SAAuB,EACvB,QAAQ;IAMR,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,GAAG,YAAY,CAAC;IAGnC,MAAM,WAAW,GAAG,IAAI,CAAC,UAAU,CACjC,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,EACxB,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,EACxB,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CACzB,CAAC;IAGF,MAAM,WAAW,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC;IAEnD,IAAI,SAAS,CAAC;IAEd,IAAI,CAAC,QAAQ,EAAE;QAUb,MAAM,SAAS,GAAG,qBAAqB,CACrC,SAAS,EACT,WAA2B,CAC5B,CAAC;QAEF,MAAM,QAAQ,GAAG,SAAS,CAAC,UAAU,EAAE,CAAC;QACxC,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC,CAAC;QAEzC,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,GAAG,UAAU,CAAC,CAAC;QAEzD,SAAS,GAAG;YACV,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,YAAY,EAAE,SAAS,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC;YAC1D,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,YAAY,EAAE,SAAS,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC;YAC1D,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,YAAY,EAAE,SAAS,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC;SAC3D,CAAC;QAEF,OAAO;YACL,SAAS;YACT,WAAW,EAAE,WAA2B;YACxC,WAAW;SACZ,CAAC;KACH;IAED,SAAS,GAAG,2BAA2B,CACrC,SAAS,EACT,QAAQ,EACR,YAAY,EACZ,WAAW,EACX,WAAW,CACZ,CAAC;IAEF,OAAO;QACL,SAAS;QACT,WAAW,EAAE,WAA2B;QACxC,WAAW;KACZ,CAAC;AACJ,CAAC;AAED,SAAS,2BAA2B,CAClC,SAAS,EACT,QAAQ,EACR,YAAY,EACZ,WAAW,EACX,WAAW;IAEX,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,GAAG,YAAY,CAAC;IAEnC,MAAM,UAAU,GAAG,SAAS,CAAC,aAAa,EAAkB,CAAC;IAC7D,MAAM,MAAM,GAAG,QAAQ,CAAC,SAAS,EAAE,CAAC;IAKpC,MAAM,MAAM,GAAG,IAAI,CAAC,UAAU,CAC5B,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAChB,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAChB,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CACjB,CAAC;IACF,MAAM,eAAe,GAAG,IAAI,CAAC,UAAU,CACrC,MAAM,CAAC,eAAe,CAAC,CAAC,CAAC,EACzB,MAAM,CAAC,eAAe,CAAC,CAAC,CAAC,EACzB,MAAM,CAAC,eAAe,CAAC,CAAC,CAAC,CAC1B,CAAC;IACF,IAAI,SAAS,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC;IAE9B,IAAI,CAAC,KAAK,CAAC,SAAS,EAAE,MAAM,EAAE,eAAe,CAAC,CAAC;IAC/C,SAAS,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;IAQ1D,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC;IACnC,MAAM,gBAAgB,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC;IAEvC,IAAI,CAAC,WAAW,CAAC,YAAY,EAAE,GAAG,EAAE,eAAe,EAAE,WAAW,CAAC,CAAC;IAClE,IAAI,CAAC,WAAW,CAAC,gBAAgB,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,WAAW,CAAC,CAAC;IAG1E,IAAI,CAAC,WAAW,CAAC,YAAY,EAAE,YAAY,EAAE,SAAS,EAAE,CAAC,WAAW,CAAC,CAAC;IACtE,IAAI,CAAC,WAAW,CAAC,gBAAgB,EAAE,gBAAgB,EAAE,SAAS,EAAE,WAAW,CAAC,CAAC;IAI7E,MAAM,gBAAgB,GAAG;QACT,qBAAqB,CAAC,SAAS,EAAgB,YAAY,CAAC;QAC5D,CACZ,qBAAqB,CAAC,SAAS,EAAgB,gBAAgB,CAAC,CACjE;KACF,CAAC;IAGF,MAAM,SAAS,GAAG,yBAAyB,CAAC,gBAAgB,EAAE,UAAU,CAAC,CAAC;IAE1E,OAAO,SAAS,CAAC;AACnB,CAAC"}
|
|
@@ -0,0 +1,45 @@
|
|
|
1
|
+
import { utilities as csUtils } from '@cornerstonejs/core';
|
|
2
|
+
import getBoundingBoxAroundShape from '../boundingBox/getBoundingBoxAroundShape';
|
|
3
|
+
import extend2DBoundingBoxInViewAxis from '../boundingBox/extend2DBoundingBoxInViewAxis';
|
|
4
|
+
function getBoundsIJKFromRectangleAnnotations(annotations, referenceVolume, options = {}) {
|
|
5
|
+
const AllBoundsIJK = [];
|
|
6
|
+
annotations.forEach((annotation) => {
|
|
7
|
+
const { data } = annotation;
|
|
8
|
+
const { points } = data.handles;
|
|
9
|
+
const { imageData, dimensions } = referenceVolume;
|
|
10
|
+
let pointsToUse = points;
|
|
11
|
+
if (data.cachedStats?.projectionPoints) {
|
|
12
|
+
const { projectionPoints } = data.cachedStats;
|
|
13
|
+
pointsToUse = [].concat(...projectionPoints);
|
|
14
|
+
}
|
|
15
|
+
const rectangleCornersIJK = pointsToUse.map((world) => csUtils.transformWorldToIndex(imageData, world));
|
|
16
|
+
let boundsIJK = getBoundingBoxAroundShape(rectangleCornersIJK, dimensions);
|
|
17
|
+
if (options.numSlicesToProject && !data.cachedStats?.projectionPoints) {
|
|
18
|
+
boundsIJK = extend2DBoundingBoxInViewAxis(boundsIJK, options.numSlicesToProject);
|
|
19
|
+
}
|
|
20
|
+
AllBoundsIJK.push(boundsIJK);
|
|
21
|
+
});
|
|
22
|
+
if (AllBoundsIJK.length === 1) {
|
|
23
|
+
return AllBoundsIJK[0];
|
|
24
|
+
}
|
|
25
|
+
const boundsIJK = AllBoundsIJK.reduce((accumulator, currentValue) => {
|
|
26
|
+
return {
|
|
27
|
+
iMin: Math.min(accumulator.iMin, currentValue.iMin),
|
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28
|
+
jMin: Math.min(accumulator.jMin, currentValue.jMin),
|
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29
|
+
kMin: Math.min(accumulator.kMin, currentValue.kMin),
|
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30
|
+
iMax: Math.max(accumulator.iMax, currentValue.iMax),
|
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31
|
+
jMax: Math.max(accumulator.jMax, currentValue.jMax),
|
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32
|
+
kMax: Math.max(accumulator.kMax, currentValue.kMax),
|
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33
|
+
};
|
|
34
|
+
}, {
|
|
35
|
+
iMin: Infinity,
|
|
36
|
+
jMin: Infinity,
|
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37
|
+
kMin: Infinity,
|
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38
|
+
iMax: -Infinity,
|
|
39
|
+
jMax: -Infinity,
|
|
40
|
+
kMax: -Infinity,
|
|
41
|
+
});
|
|
42
|
+
return boundsIJK;
|
|
43
|
+
}
|
|
44
|
+
export default getBoundsIJKFromRectangleAnnotations;
|
|
45
|
+
//# sourceMappingURL=getBoundsIJKFromRectangleAnnotations.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"getBoundsIJKFromRectangleAnnotations.js","sourceRoot":"","sources":["../../../../src/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,IAAI,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAE3D,OAAO,yBAAyB,MAAM,0CAA0C,CAAC;AACjF,OAAO,6BAA6B,MAAM,8CAA8C,CAAC;AAMzF,SAAS,oCAAoC,CAC3C,WAAW,EACX,eAAe,EACf,UAAU,EAAa;IAEvB,MAAM,YAAY,GAAG,EAAE,CAAC;IACxB,WAAW,CAAC,OAAO,CAAC,CAAC,UAAU,EAAE,EAAE;QACjC,MAAM,EAAE,IAAI,EAAE,GAAG,UAAU,CAAC;QAC5B,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAC,OAAO,CAAC;QAEhC,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,GAAG,eAAe,CAAC;QAElD,IAAI,WAAW,GAAG,MAAM,CAAC;QAEzB,IAAI,IAAI,CAAC,WAAW,EAAE,gBAAgB,EAAE;YACtC,MAAM,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAC,WAAW,CAAC;YAC9C,WAAW,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,gBAAgB,CAAC,CAAC;SAC9C;QAED,MAAM,mBAAmB,GAAG,WAAW,CAAC,GAAG,CACzC,CAAC,KAAK,EAAE,EAAE,CAAC,OAAO,CAAC,qBAAqB,CAAC,SAAS,EAAE,KAAK,CAAiB,CAC3E,CAAC;QACF,IAAI,SAAS,GAAG,yBAAyB,CAAC,mBAAmB,EAAE,UAAU,CAAC,CAAC;QAI3E,IAAI,OAAO,CAAC,kBAAkB,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,gBAAgB,EAAE;YACrE,SAAS,GAAG,6BAA6B,CACvC,SAAS,EACT,OAAO,CAAC,kBAAkB,CAC3B,CAAC;SACH;QAED,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;IAC/B,CAAC,CAAC,CAAC;IAEH,IAAI,YAAY,CAAC,MAAM,KAAK,CAAC,EAAE;QAC7B,OAAO,YAAY,CAAC,CAAC,CAAC,CAAC;KACxB;IAID,MAAM,SAAS,GAAG,YAAY,CAAC,MAAM,CACnC,CAAC,WAAW,EAAE,YAAY,EAAE,EAAE;QAC5B,OAAO;YACL,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACnD,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACnD,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACnD,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACnD,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;YACnD,IAAI,EAAE,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,IAAI,EAAE,YAAY,CAAC,IAAI,CAAC;SACpD,CAAC;IACJ,CAAC,EACD;QACE,IAAI,EAAE,QAAQ;QACd,IAAI,EAAE,QAAQ;QACd,IAAI,EAAE,QAAQ;QACd,IAAI,EAAE,CAAC,QAAQ;QACf,IAAI,EAAE,CAAC,QAAQ;QACf,IAAI,EAAE,CAAC,QAAQ;KAChB,CACF,CAAC;IAEF,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,eAAe,oCAAoC,CAAC"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/rectangleROITool/index.ts"],"names":[],"mappings":"AAAA,OAAO,oCAAoC,MAAM,wCAAwC,CAAC;AAE1F,OAAO,EAAE,oCAAoC,EAAE,CAAC"}
|
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
import { getBoundingBoxAroundShape, extend2DBoundingBoxInViewAxis } from './getBoundingBoxUtils';
|
|
2
1
|
import thresholdVolumeByRange from './thresholdVolumeByRange';
|
|
2
|
+
import rectangleROIThresholdVolumeByRange from './rectangleROIThresholdVolumeByRange';
|
|
3
3
|
import createMergedLabelmapForIndex from './createMergedLabelmapForIndex';
|
|
4
4
|
import isValidRepresentationConfig from './isValidRepresentationConfig';
|
|
5
5
|
import getDefaultRepresentationConfig from './getDefaultRepresentationConfig';
|
|
6
6
|
import createLabelmapVolumeForViewport from './createLabelmapVolumeForViewport';
|
|
7
|
-
export {
|
|
7
|
+
export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, };
|
|
@@ -1,8 +1,8 @@
|
|
|
1
|
-
import { getBoundingBoxAroundShape, extend2DBoundingBoxInViewAxis, } from './getBoundingBoxUtils';
|
|
2
1
|
import thresholdVolumeByRange from './thresholdVolumeByRange';
|
|
2
|
+
import rectangleROIThresholdVolumeByRange from './rectangleROIThresholdVolumeByRange';
|
|
3
3
|
import createMergedLabelmapForIndex from './createMergedLabelmapForIndex';
|
|
4
4
|
import isValidRepresentationConfig from './isValidRepresentationConfig';
|
|
5
5
|
import getDefaultRepresentationConfig from './getDefaultRepresentationConfig';
|
|
6
6
|
import createLabelmapVolumeForViewport from './createLabelmapVolumeForViewport';
|
|
7
|
-
export {
|
|
7
|
+
export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, };
|
|
8
8
|
//# sourceMappingURL=index.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/index.ts"],"names":[],"mappings":"AAAA,OAAO,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/index.ts"],"names":[],"mappings":"AAAA,OAAO,sBAAsB,MAAM,0BAA0B,CAAC;AAC9D,OAAO,kCAAkC,MAAM,sCAAsC,CAAC;AACtF,OAAO,4BAA4B,MAAM,gCAAgC,CAAC;AAC1E,OAAO,2BAA2B,MAAM,+BAA+B,CAAC;AACxE,OAAO,8BAA8B,MAAM,kCAAkC,CAAC;AAC9E,OAAO,+BAA+B,MAAM,mCAAmC,CAAC;AAEhF,OAAO,EACL,sBAAsB,EACtB,4BAA4B,EAC5B,2BAA2B,EAC3B,8BAA8B,EAC9B,+BAA+B,EAC/B,kCAAkC,GACnC,CAAC"}
|
|
@@ -0,0 +1,19 @@
|
|
|
1
|
+
import type { Types } from '@cornerstonejs/core';
|
|
2
|
+
export declare type ThresholdRangeOptions = {
|
|
3
|
+
lower: number;
|
|
4
|
+
upper: number;
|
|
5
|
+
numSlicesToProject?: number;
|
|
6
|
+
overwrite: boolean;
|
|
7
|
+
};
|
|
8
|
+
export declare type AnnotationForThresholding = {
|
|
9
|
+
data: {
|
|
10
|
+
handles: {
|
|
11
|
+
points: Types.Point3[];
|
|
12
|
+
};
|
|
13
|
+
cachedStats?: {
|
|
14
|
+
projectionPoints?: Types.Point3[][];
|
|
15
|
+
};
|
|
16
|
+
};
|
|
17
|
+
};
|
|
18
|
+
declare function rectangleROIThresholdVolumeByRange(annotationUIDs: string[], segmentationVolume: Types.IImageVolume, referenceVolumes: Types.IImageVolume[], options: ThresholdRangeOptions): Types.IImageVolume;
|
|
19
|
+
export default rectangleROIThresholdVolumeByRange;
|
|
@@ -0,0 +1,37 @@
|
|
|
1
|
+
import { state } from '../../stateManagement/annotation';
|
|
2
|
+
import { RectangleROIStartEndThresholdTool, RectangleROIThresholdTool, } from '../../tools';
|
|
3
|
+
import thresholdVolumeByRange from './thresholdVolumeByRange';
|
|
4
|
+
import getBoundsIJKFromRectangleAnnotations from '../rectangleROITool/getBoundsIJKFromRectangleAnnotations';
|
|
5
|
+
function rectangleROIThresholdVolumeByRange(annotationUIDs, segmentationVolume, referenceVolumes, options) {
|
|
6
|
+
if (referenceVolumes.length > 1) {
|
|
7
|
+
throw new Error('thresholding based on more than one reference volumes data is not supported yet');
|
|
8
|
+
}
|
|
9
|
+
const referenceVolume = referenceVolumes[0];
|
|
10
|
+
const annotations = annotationUIDs.map((annotationUID) => {
|
|
11
|
+
return state.getAnnotation(annotationUID);
|
|
12
|
+
});
|
|
13
|
+
_validateAnnotations(annotations);
|
|
14
|
+
const boundsIJK = getBoundsIJKFromRectangleAnnotations(annotations, referenceVolume, options);
|
|
15
|
+
const optionsToUse = {
|
|
16
|
+
lower: options.lower,
|
|
17
|
+
upper: options.upper,
|
|
18
|
+
overwrite: options.overwrite,
|
|
19
|
+
boundsIJK,
|
|
20
|
+
};
|
|
21
|
+
const outputSegmentationVolume = thresholdVolumeByRange(segmentationVolume, referenceVolume, optionsToUse);
|
|
22
|
+
return outputSegmentationVolume;
|
|
23
|
+
}
|
|
24
|
+
function _validateAnnotations(annotations) {
|
|
25
|
+
const validToolNames = [
|
|
26
|
+
RectangleROIThresholdTool.toolName,
|
|
27
|
+
RectangleROIStartEndThresholdTool.toolName,
|
|
28
|
+
];
|
|
29
|
+
for (const annotation of annotations) {
|
|
30
|
+
const name = annotation.metadata.toolName;
|
|
31
|
+
if (!validToolNames.includes(name)) {
|
|
32
|
+
throw new Error('rectangleROIThresholdVolumeByRange only supports RectangleROIThreshold and RectangleROIStartEndThreshold annotations');
|
|
33
|
+
}
|
|
34
|
+
}
|
|
35
|
+
}
|
|
36
|
+
export default rectangleROIThresholdVolumeByRange;
|
|
37
|
+
//# sourceMappingURL=rectangleROIThresholdVolumeByRange.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
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+
{"version":3,"file":"rectangleROIThresholdVolumeByRange.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/rectangleROIThresholdVolumeByRange.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,KAAK,EAAE,MAAM,kCAAkC,CAAC;AACzD,OAAO,EACL,iCAAiC,EACjC,yBAAyB,GAC1B,MAAM,aAAa,CAAC;AAErB,OAAO,sBAAsB,MAAM,0BAA0B,CAAC;AAC9D,OAAO,oCAAoC,MAAM,0DAA0D,CAAC;AA+B5G,SAAS,kCAAkC,CACzC,cAAwB,EACxB,kBAAsC,EACtC,gBAAsC,EACtC,OAA8B;IAE9B,IAAI,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QAC/B,MAAM,IAAI,KAAK,CACb,iFAAiF,CAClF,CAAC;KACH;IAED,MAAM,eAAe,GAAG,gBAAgB,CAAC,CAAC,CAAC,CAAC;IAE5C,MAAM,WAAW,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC,aAAa,EAAE,EAAE;QACvD,OAAO,KAAK,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC;IAC5C,CAAC,CAAC,CAAC;IAEH,oBAAoB,CAAC,WAAW,CAAC,CAAC;IAElC,MAAM,SAAS,GAAG,oCAAoC,CACpD,WAAW,EACX,eAAe,EACf,OAAO,CACR,CAAC;IAEF,MAAM,YAAY,GAAG;QACnB,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,SAAS,EAAE,OAAO,CAAC,SAAS;QAC5B,SAAS;KACV,CAAC;IAEF,MAAM,wBAAwB,GAAG,sBAAsB,CACrD,kBAAkB,EAClB,eAAe,EACf,YAAY,CACb,CAAC;IAEF,OAAO,wBAAwB,CAAC;AAClC,CAAC;AAED,SAAS,oBAAoB,CAAC,WAAW;IACvC,MAAM,cAAc,GAAG;QACrB,yBAAyB,CAAC,QAAQ;QAClC,iCAAiC,CAAC,QAAQ;KAC3C,CAAC;IAEF,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE;QACpC,MAAM,IAAI,GAAG,UAAU,CAAC,QAAQ,CAAC,QAAQ,CAAC;QAC1C,IAAI,CAAC,cAAc,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE;YAClC,MAAM,IAAI,KAAK,CACb,sHAAsH,CACvH,CAAC;SACH;KACF;AACH,CAAC;AAED,eAAe,kCAAkC,CAAC"}
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import type { Types } from '@cornerstonejs/core';
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import {
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import { BoundsIJK } from '../../types';
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export declare type ThresholdRangeOptions = {
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upper: number;
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lower: number;
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boundsIJK: BoundsIJK;
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overwrite: boolean;
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};
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metadata: {
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enabledElement: Types.IEnabledElement;
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};
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data: {
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handles: {
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points: Types.Point3[];
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};
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cachedStats?: {
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projectionPoints?: Types.Point3[][];
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};
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};
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};
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declare function thresholdVolumeByRange(annotations: AnnotationForThresholding[], referenceVolumes: Types.IImageVolume[], segmentationRepresentation: ToolGroupSpecificRepresentation, options: ThresholdRangeOptions): Types.IImageVolume;
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export declare function extendBoundingBoxInSliceAxisIfNecessary(boundsIJK: [Types.Point2, Types.Point2, Types.Point2], numSlicesToProject: number): [Types.Point2, Types.Point2, Types.Point2];
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declare function thresholdVolumeByRange(segmentationVolume: Types.IImageVolume, referenceVolume: Types.IImageVolume, options: ThresholdRangeOptions): Types.IImageVolume;
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export default thresholdVolumeByRange;
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import { cache, utilities as csUtils } from '@cornerstonejs/core';
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import { getBoundingBoxAroundShape, extend2DBoundingBoxInViewAxis, } from '../segmentation';
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import { pointInShapeCallback } from '../../utilities';
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import { triggerSegmentationDataModified } from '../../stateManagement/segmentation/triggerSegmentationEvents';
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const { transformWorldToIndex } = csUtils;
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function thresholdVolumeByRange(annotations, referenceVolumes, segmentationRepresentation, options) {
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if (referenceVolumes.length > 1) {
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throw new Error('thresholding more than one volumes is not supported yet');
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}
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const segmentation = SegmentationState.getSegmentation(segmentationRepresentation.segmentationId);
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const { segmentationId } = segmentationRepresentation;
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if (!segmentation) {
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throw new Error('No Segmentation Found');
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}
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const { type, representationData } = segmentation;
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const { volumeId } = representationData[type];
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const segmentationVolume = cache.getVolume(volumeId);
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function thresholdVolumeByRange(segmentationVolume, referenceVolume, options) {
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4
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const { scalarData, imageData: segmentationImageData } = segmentationVolume;
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const {
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const { overwrite, boundsIJK, upper, lower } = options;
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const { imageData } = referenceVolume;
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const referenceValues = imageData.getPointData().getScalars().getData();
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if (overwrite) {
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for (let i = 0; i < scalarData.length; i++) {
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scalarData[i] = 0;
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}
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}
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const
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const
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const values = imageData.getPointData().getScalars().getData();
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let pointsToUse = points;
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if (data.cachedStats?.projectionPoints) {
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const { projectionPoints } = data.cachedStats;
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pointsToUse = [].concat(...projectionPoints);
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const callback = ({ index, pointIJK }) => {
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const offset = imageData.computeOffsetIndex(pointIJK);
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const value = referenceValues[offset];
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if (value <= lower || value >= upper) {
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return;
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}
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}
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const callback = ({ index, pointIJK }) => {
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const offset = imageData.computeOffsetIndex(pointIJK);
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const value = values[offset];
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if (value <= lowerThreshold || value >= higherThreshold) {
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return;
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}
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scalarData[index] = 1;
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};
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pointInShapeCallback(segmentationImageData, () => true, callback, boundsIJK);
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});
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triggerSegmentationDataModified(segmentationId);
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scalarData[index] = 1;
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};
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pointInShapeCallback(segmentationImageData, () => true, callback, boundsIJK);
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triggerSegmentationDataModified(segmentationVolume.volumeId);
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return segmentationVolume;
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}
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-
export function extendBoundingBoxInSliceAxisIfNecessary(boundsIJK, numSlicesToProject) {
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const extendedBoundsIJK = extend2DBoundingBoxInViewAxis(boundsIJK, numSlicesToProject);
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return extendedBoundsIJK;
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}
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export default thresholdVolumeByRange;
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//# sourceMappingURL=thresholdVolumeByRange.js.map
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{"version":3,"file":"thresholdVolumeByRange.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/thresholdVolumeByRange.ts"],"names":[],"mappings":"
|
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1
|
+
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|