@cornerstonejs/tools 0.17.3 → 0.18.1

package/dist/cjs/utilities/boundingBox/extend2DBoundingBoxInViewAxis.js

@@ -0,0 +1,13 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+function extend2DBoundingBoxInViewAxis(boundsIJK, numSlicesToProject) {
+    const sliceNormalIndex = boundsIJK.findIndex(([min, max]) => min === max);
+    if (sliceNormalIndex === -1) {
+        throw new Error('3D bounding boxes not supported in an oblique plane');
+    }
+    boundsIJK[sliceNormalIndex][0] -= numSlicesToProject;
+    boundsIJK[sliceNormalIndex][1] += numSlicesToProject;
+    return boundsIJK;
+}
+exports.default = extend2DBoundingBoxInViewAxis;
+//# sourceMappingURL=extend2DBoundingBoxInViewAxis.js.map

package/dist/cjs/utilities/boundingBox/extend2DBoundingBoxInViewAxis.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.d.ts

@@ -0,0 +1,3 @@
+import type { Types } from '@cornerstonejs/core';
+declare function getBoundingBoxAroundShape(points: Types.Point3[], dimensions?: Types.Point3): [Types.Point2, Types.Point2, Types.Point2];
+export default getBoundingBoxAroundShape;

package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.js

@@ -0,0 +1,40 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+function getBoundingBoxAroundShape(points, dimensions) {
+    let xMin = Infinity;
+    let xMax = 0;
+    let yMin = Infinity;
+    let yMax = 0;
+    let zMin = Infinity;
+    let zMax = 0;
+    points.forEach((p) => {
+        xMin = Math.min(p[0], xMin);
+        xMax = Math.max(p[0], xMax);
+        yMin = Math.min(p[1], yMin);
+        yMax = Math.max(p[1], yMax);
+        zMin = Math.min(p[2], zMin);
+        zMax = Math.max(p[2], zMax);
+    });
+    xMin = Math.floor(xMin);
+    xMax = Math.floor(xMax);
+    yMin = Math.floor(yMin);
+    yMax = Math.floor(yMax);
+    zMin = Math.floor(zMin);
+    zMax = Math.floor(zMax);
+    if (dimensions) {
+        const [width, height, depth] = dimensions;
+        xMin = Math.max(0, xMin);
+        xMax = Math.min(width - 1, xMax);
+        yMin = Math.max(0, yMin);
+        yMax = Math.min(height - 1, yMax);
+        zMin = Math.max(0, zMin);
+        zMax = Math.min(depth - 1, zMax);
+    }
+    return [
+        [xMin, xMax],
+        [yMin, yMax],
+        [zMin, zMax],
+    ];
+}
+exports.default = getBoundingBoxAroundShape;
+//# sourceMappingURL=getBoundingBoxAroundShape.js.map

package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/boundingBox/index.d.ts

@@ -0,0 +1,3 @@
+import extend2DBoundingBoxInViewAxis from './extend2DBoundingBoxInViewAxis';
+import getBoundingBoxAroundShape from './getBoundingBoxAroundShape';
+export { extend2DBoundingBoxInViewAxis, getBoundingBoxAroundShape };

package/dist/cjs/utilities/boundingBox/index.js

@@ -0,0 +1,11 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getBoundingBoxAroundShape = exports.extend2DBoundingBoxInViewAxis = void 0;
+const extend2DBoundingBoxInViewAxis_1 = __importDefault(require("./extend2DBoundingBoxInViewAxis"));
+exports.extend2DBoundingBoxInViewAxis = extend2DBoundingBoxInViewAxis_1.default;
+const getBoundingBoxAroundShape_1 = __importDefault(require("./getBoundingBoxAroundShape"));
+exports.getBoundingBoxAroundShape = getBoundingBoxAroundShape_1.default;
+//# sourceMappingURL=index.js.map

package/dist/cjs/utilities/boundingBox/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/boundingBox/index.ts"],"names":[],"mappings":";;;;;;AAAA,oGAA4E;AAGnE,wCAHF,uCAA6B,CAGE;AAFtC,4FAAoE;AAE5B,oCAFjC,mCAAyB,CAEiC"}

package/dist/cjs/utilities/index.d.ts

@@ -17,5 +17,7 @@ import * as stackScrollTool from './stackScrollTool';
 import * as viewportFilters from './viewportFilters';
 import * as orientation from './orientation';
 import * as cine from './cine';
+import * as boundingBox from './boundingBox';
+import * as rectangleROITool from './rectangleROITool';
 import { triggerEvent } from '@cornerstonejs/core';
-export { math, planar, viewportFilters, stackScrollTool, drawing, debounce, deepMerge, throttle, orientation, isObject, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, cine, clip, };
+export { math, planar, viewportFilters, stackScrollTool, drawing, debounce, deepMerge, throttle, orientation, isObject, triggerEvent, calibrateImageSpacing, segmentation, triggerAnnotationRenderForViewportIds, pointInShapeCallback, pointInSurroundingSphereCallback, getAnnotationNearPoint, getAnnotationNearPointOnEnabledElement, jumpToSlice, cine, clip, boundingBox, rectangleROITool, };

package/dist/cjs/utilities/index.js

@@ -22,7 +22,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.clip = exports.cine = exports.jumpToSlice = exports.getAnnotationNearPointOnEnabledElement = exports.getAnnotationNearPoint = exports.pointInSurroundingSphereCallback = exports.pointInShapeCallback = exports.triggerAnnotationRenderForViewportIds = exports.segmentation = exports.calibrateImageSpacing = exports.triggerEvent = exports.isObject = exports.orientation = exports.throttle = exports.deepMerge = exports.debounce = exports.drawing = exports.stackScrollTool = exports.viewportFilters = exports.planar = exports.math = void 0;
+exports.rectangleROITool = exports.boundingBox = exports.clip = exports.cine = exports.jumpToSlice = exports.getAnnotationNearPointOnEnabledElement = exports.getAnnotationNearPoint = exports.pointInSurroundingSphereCallback = exports.pointInShapeCallback = exports.triggerAnnotationRenderForViewportIds = exports.segmentation = exports.calibrateImageSpacing = exports.triggerEvent = exports.isObject = exports.orientation = exports.throttle = exports.deepMerge = exports.debounce = exports.drawing = exports.stackScrollTool = exports.viewportFilters = exports.planar = exports.math = void 0;
 const getAnnotationNearPoint_1 = require("./getAnnotationNearPoint");
 Object.defineProperty(exports, "getAnnotationNearPoint", { enumerable: true, get: function () { return getAnnotationNearPoint_1.getAnnotationNearPoint; } });
 Object.defineProperty(exports, "getAnnotationNearPointOnEnabledElement", { enumerable: true, get: function () { return getAnnotationNearPoint_1.getAnnotationNearPointOnEnabledElement; } });
@@ -62,6 +62,10 @@ const orientation = __importStar(require("./orientation"));
 exports.orientation = orientation;
 const cine = __importStar(require("./cine"));
 exports.cine = cine;
+const boundingBox = __importStar(require("./boundingBox"));
+exports.boundingBox = boundingBox;
+const rectangleROITool = __importStar(require("./rectangleROITool"));
+exports.rectangleROITool = rectangleROITool;
 const core_1 = require("@cornerstonejs/core");
 Object.defineProperty(exports, "triggerEvent", { enumerable: true, get: function () { return core_1.triggerEvent; } });
 //# sourceMappingURL=index.js.map

package/dist/cjs/utilities/index.js.map

@@ -1 +1 @@
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package/dist/cjs/utilities/pointInShapeCallback.d.ts

@@ -1,5 +1,6 @@
 import type { Types } from '@cornerstonejs/core';
 import type { vtkImageData } from '@kitware/vtk.js/Common/DataModel/ImageData';
+import BoundsIJK from '../types/BoundsIJK';
 export declare type PointInShapeCallback = ({ value, index, pointIJK, pointLPS, }: {
     value: number;
     index: number;
@@ -7,6 +8,4 @@ export declare type PointInShapeCallback = ({ value, index, pointIJK, pointLPS,
     pointLPS: Types.Point3;
 }) => void;
 export declare type ShapeFnCriteria = (pointIJK: Types.Point3, pointLPS: Types.Point3) => boolean;
-declare type BoundsIJK = [Types.Point2, Types.Point2, Types.Point2];
 export default function pointInShapeCallback(imageData: vtkImageData | Types.CPUImageData, pointInShapeFn: ShapeFnCriteria, callback: PointInShapeCallback, boundsIJK?: BoundsIJK): void;
-export {};

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package/dist/cjs/utilities/pointInSurroundingSphereCallback.d.ts

@@ -1,4 +1,4 @@
 import type { Types } from '@cornerstonejs/core';
 import type { vtkImageData } from '@kitware/vtk.js/Common/DataModel/ImageData';
 import { PointInShapeCallback } from './pointInShapeCallback';
-export default function pointInSurroundingSphereCallback(viewport: Types.IVolumeViewport, imageData: vtkImageData, circlePoints: [Types.Point3, Types.Point3], callback: PointInShapeCallback): void;
+export default function pointInSurroundingSphereCallback(imageData: vtkImageData, circlePoints: [Types.Point3, Types.Point3], callback: PointInShapeCallback, viewport?: Types.IVolumeViewport): void;

package/dist/cjs/utilities/pointInSurroundingSphereCallback.js

@@ -6,10 +6,48 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const core_1 = require("@cornerstonejs/core");
 const gl_matrix_1 = require("gl-matrix");
 const sphere_1 = require("./math/sphere");
-const getBoundingBoxUtils_1 = require("./segmentation/getBoundingBoxUtils");
 const pointInShapeCallback_1 = __importDefault(require("./pointInShapeCallback"));
+const boundingBox_1 = require("./boundingBox");
 const { transformWorldToIndex } = core_1.utilities;
-function pointInSurroundingSphereCallback(viewport, imageData, circlePoints, callback) {
+function pointInSurroundingSphereCallback(imageData, circlePoints, callback, viewport) {
+    const { boundsIJK, centerWorld, radiusWorld } = _getBounds(circlePoints, imageData, viewport);
+    const sphereObj = {
+        center: centerWorld,
+        radius: radiusWorld,
+    };
+    (0, pointInShapeCallback_1.default)(imageData, (pointLPS) => (0, sphere_1.pointInSphere)(sphereObj, pointLPS), callback, boundsIJK);
+}
+exports.default = pointInSurroundingSphereCallback;
+function _getBounds(circlePoints, imageData, viewport) {
+    const [bottom, top] = circlePoints;
+    const centerWorld = gl_matrix_1.vec3.fromValues((bottom[0] + top[0]) / 2, (bottom[1] + top[1]) / 2, (bottom[2] + top[2]) / 2);
+    const radiusWorld = gl_matrix_1.vec3.distance(bottom, top) / 2;
+    let boundsIJK;
+    if (!viewport) {
+        const centerIJK = transformWorldToIndex(imageData, centerWorld);
+        const spacings = imageData.getSpacing();
+        const minSpacing = Math.min(...spacings);
+        const maxRadiusIJK = Math.ceil(radiusWorld / minSpacing);
+        boundsIJK = [
+            [centerIJK[0] - maxRadiusIJK, centerIJK[0] + maxRadiusIJK],
+            [centerIJK[1] - maxRadiusIJK, centerIJK[1] + maxRadiusIJK],
+            [centerIJK[2] - maxRadiusIJK, centerIJK[2] + maxRadiusIJK],
+        ];
+        return {
+            boundsIJK,
+            centerWorld: centerWorld,
+            radiusWorld,
+        };
+    }
+    boundsIJK = _computeBoundsIJKWithCamera(imageData, viewport, circlePoints, centerWorld, radiusWorld);
+    return {
+        boundsIJK,
+        centerWorld: centerWorld,
+        radiusWorld,
+    };
+}
+function _computeBoundsIJKWithCamera(imageData, viewport, circlePoints, centerWorld, radiusWorld) {
+    const [bottom, top] = circlePoints;
     const dimensions = imageData.getDimensions();
     const camera = viewport.getCamera();
     const viewUp = gl_matrix_1.vec3.fromValues(camera.viewUp[0], camera.viewUp[1], camera.viewUp[2]);
@@ -17,9 +55,6 @@ function pointInSurroundingSphereCallback(viewport, imageData, circlePoints, cal
     let viewRight = gl_matrix_1.vec3.create();
     gl_matrix_1.vec3.cross(viewRight, viewUp, viewPlaneNormal);
     viewRight = [-viewRight[0], -viewRight[1], -viewRight[2]];
-    const [bottom, top] = circlePoints;
-    const sphereCenterWorld = gl_matrix_1.vec3.fromValues((bottom[0] + top[0]) / 2, (bottom[1] + top[1]) / 2, (bottom[2] + top[2]) / 2);
-    const radiusWorld = gl_matrix_1.vec3.distance(bottom, top) / 2;
     const topLeftWorld = gl_matrix_1.vec3.create();
     const bottomRightWorld = gl_matrix_1.vec3.create();
     gl_matrix_1.vec3.scaleAndAdd(topLeftWorld, top, viewPlaneNormal, radiusWorld);
@@ -30,12 +65,7 @@ function pointInSurroundingSphereCallback(viewport, imageData, circlePoints, cal
         transformWorldToIndex(imageData, topLeftWorld),
         (transformWorldToIndex(imageData, bottomRightWorld)),
     ];
-    const boundsIJK = (0, getBoundingBoxUtils_1.getBoundingBoxAroundShape)(sphereCornersIJK, dimensions);
-    const sphereObj = {
-        center: sphereCenterWorld,
-        radius: radiusWorld,
-    };
-    (0, pointInShapeCallback_1.default)(imageData, (pointLPS) => (0, sphere_1.pointInSphere)(sphereObj, pointLPS), callback, boundsIJK);
+    const boundsIJK = (0, boundingBox_1.getBoundingBoxAroundShape)(sphereCornersIJK, dimensions);
+    return boundsIJK;
 }
-exports.default = pointInSurroundingSphereCallback;
 //# sourceMappingURL=pointInSurroundingSphereCallback.js.map

package/dist/cjs/utilities/pointInSurroundingSphereCallback.js.map

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package/dist/cjs/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.d.ts

@@ -0,0 +1,5 @@
+declare type Options = {
+    numSlicesToProject?: number;
+};
+declare function getBoundsIJKFromRectangleAnnotations(annotations: any, referenceVolume: any, options?: Options): any;
+export default getBoundsIJKFromRectangleAnnotations;

package/dist/cjs/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.js

@@ -0,0 +1,51 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const core_1 = require("@cornerstonejs/core");
+const getBoundingBoxAroundShape_1 = __importDefault(require("../boundingBox/getBoundingBoxAroundShape"));
+const extend2DBoundingBoxInViewAxis_1 = __importDefault(require("../boundingBox/extend2DBoundingBoxInViewAxis"));
+function getBoundsIJKFromRectangleAnnotations(annotations, referenceVolume, options = {}) {
+    const AllBoundsIJK = [];
+    annotations.forEach((annotation) => {
+        var _a, _b;
+        const { data } = annotation;
+        const { points } = data.handles;
+        const { imageData, dimensions } = referenceVolume;
+        let pointsToUse = points;
+        if ((_a = data.cachedStats) === null || _a === void 0 ? void 0 : _a.projectionPoints) {
+            const { projectionPoints } = data.cachedStats;
+            pointsToUse = [].concat(...projectionPoints);
+        }
+        const rectangleCornersIJK = pointsToUse.map((world) => core_1.utilities.transformWorldToIndex(imageData, world));
+        let boundsIJK = (0, getBoundingBoxAroundShape_1.default)(rectangleCornersIJK, dimensions);
+        if (options.numSlicesToProject && !((_b = data.cachedStats) === null || _b === void 0 ? void 0 : _b.projectionPoints)) {
+            boundsIJK = (0, extend2DBoundingBoxInViewAxis_1.default)(boundsIJK, options.numSlicesToProject);
+        }
+        AllBoundsIJK.push(boundsIJK);
+    });
+    if (AllBoundsIJK.length === 1) {
+        return AllBoundsIJK[0];
+    }
+    const boundsIJK = AllBoundsIJK.reduce((accumulator, currentValue) => {
+        return {
+            iMin: Math.min(accumulator.iMin, currentValue.iMin),
+            jMin: Math.min(accumulator.jMin, currentValue.jMin),
+            kMin: Math.min(accumulator.kMin, currentValue.kMin),
+            iMax: Math.max(accumulator.iMax, currentValue.iMax),
+            jMax: Math.max(accumulator.jMax, currentValue.jMax),
+            kMax: Math.max(accumulator.kMax, currentValue.kMax),
+        };
+    }, {
+        iMin: Infinity,
+        jMin: Infinity,
+        kMin: Infinity,
+        iMax: -Infinity,
+        jMax: -Infinity,
+        kMax: -Infinity,
+    });
+    return boundsIJK;
+}
+exports.default = getBoundsIJKFromRectangleAnnotations;
+//# sourceMappingURL=getBoundsIJKFromRectangleAnnotations.js.map

package/dist/cjs/utilities/rectangleROITool/getBoundsIJKFromRectangleAnnotations.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/rectangleROITool/index.d.ts

@@ -0,0 +1,2 @@
+import getBoundsIJKFromRectangleAnnotations from './getBoundsIJKFromRectangleAnnotations';
+export { getBoundsIJKFromRectangleAnnotations };

package/dist/cjs/utilities/rectangleROITool/index.js

@@ -0,0 +1,9 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getBoundsIJKFromRectangleAnnotations = void 0;
+const getBoundsIJKFromRectangleAnnotations_1 = __importDefault(require("./getBoundsIJKFromRectangleAnnotations"));
+exports.getBoundsIJKFromRectangleAnnotations = getBoundsIJKFromRectangleAnnotations_1.default;
+//# sourceMappingURL=index.js.map

package/dist/cjs/utilities/rectangleROITool/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/rectangleROITool/index.ts"],"names":[],"mappings":";;;;;;AAAA,kHAA0F;AAEjF,+CAFF,8CAAoC,CAEE"}

package/dist/cjs/utilities/segmentation/index.d.ts

@@ -1,7 +1,7 @@
-import { getBoundingBoxAroundShape, extend2DBoundingBoxInViewAxis } from './getBoundingBoxUtils';
 import thresholdVolumeByRange from './thresholdVolumeByRange';
+import rectangleROIThresholdVolumeByRange from './rectangleROIThresholdVolumeByRange';
 import createMergedLabelmapForIndex from './createMergedLabelmapForIndex';
 import isValidRepresentationConfig from './isValidRepresentationConfig';
 import getDefaultRepresentationConfig from './getDefaultRepresentationConfig';
 import createLabelmapVolumeForViewport from './createLabelmapVolumeForViewport';
-export { getBoundingBoxAroundShape, extend2DBoundingBoxInViewAxis, thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, };
+export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, };

package/dist/cjs/utilities/segmentation/index.js

@@ -3,12 +3,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.createLabelmapVolumeForViewport = exports.getDefaultRepresentationConfig = exports.isValidRepresentationConfig = exports.createMergedLabelmapForIndex = exports.thresholdVolumeByRange = exports.extend2DBoundingBoxInViewAxis = exports.getBoundingBoxAroundShape = void 0;
-const getBoundingBoxUtils_1 = require("./getBoundingBoxUtils");
-Object.defineProperty(exports, "getBoundingBoxAroundShape", { enumerable: true, get: function () { return getBoundingBoxUtils_1.getBoundingBoxAroundShape; } });
-Object.defineProperty(exports, "extend2DBoundingBoxInViewAxis", { enumerable: true, get: function () { return getBoundingBoxUtils_1.extend2DBoundingBoxInViewAxis; } });
+exports.rectangleROIThresholdVolumeByRange = exports.createLabelmapVolumeForViewport = exports.getDefaultRepresentationConfig = exports.isValidRepresentationConfig = exports.createMergedLabelmapForIndex = exports.thresholdVolumeByRange = void 0;
 const thresholdVolumeByRange_1 = __importDefault(require("./thresholdVolumeByRange"));
 exports.thresholdVolumeByRange = thresholdVolumeByRange_1.default;
+const rectangleROIThresholdVolumeByRange_1 = __importDefault(require("./rectangleROIThresholdVolumeByRange"));
+exports.rectangleROIThresholdVolumeByRange = rectangleROIThresholdVolumeByRange_1.default;
 const createMergedLabelmapForIndex_1 = __importDefault(require("./createMergedLabelmapForIndex"));
 exports.createMergedLabelmapForIndex = createMergedLabelmapForIndex_1.default;
 const isValidRepresentationConfig_1 = __importDefault(require("./isValidRepresentationConfig"));

package/dist/cjs/utilities/segmentation/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/index.ts"],"names":[],"mappings":";;;;;;AAAA,sFAA8D;AAQ5D,iCARK,gCAAsB,CAQL;AAPxB,8GAAsF;AAYpF,6CAZK,4CAAkC,CAYL;AAXpC,kGAA0E;AAOxE,uCAPK,sCAA4B,CAOL;AAN9B,gGAAwE;AAOtE,sCAPK,qCAA2B,CAOL;AAN7B,sGAA8E;AAO5E,yCAPK,wCAA8B,CAOL;AANhC,wGAAgF;AAO9E,0CAPK,yCAA+B,CAOL"}

package/dist/cjs/utilities/segmentation/rectangleROIThresholdVolumeByRange.d.ts

@@ -0,0 +1,19 @@
+import type { Types } from '@cornerstonejs/core';
+export declare type ThresholdRangeOptions = {
+    lower: number;
+    upper: number;
+    numSlicesToProject?: number;
+    overwrite: boolean;
+};
+export declare type AnnotationForThresholding = {
+    data: {
+        handles: {
+            points: Types.Point3[];
+        };
+        cachedStats?: {
+            projectionPoints?: Types.Point3[][];
+        };
+    };
+};
+declare function rectangleROIThresholdVolumeByRange(annotationUIDs: string[], segmentationVolume: Types.IImageVolume, referenceVolumes: Types.IImageVolume[], options: ThresholdRangeOptions): Types.IImageVolume;
+export default rectangleROIThresholdVolumeByRange;

package/dist/cjs/utilities/segmentation/rectangleROIThresholdVolumeByRange.js

@@ -0,0 +1,42 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const annotation_1 = require("../../stateManagement/annotation");
+const tools_1 = require("../../tools");
+const thresholdVolumeByRange_1 = __importDefault(require("./thresholdVolumeByRange"));
+const getBoundsIJKFromRectangleAnnotations_1 = __importDefault(require("../rectangleROITool/getBoundsIJKFromRectangleAnnotations"));
+function rectangleROIThresholdVolumeByRange(annotationUIDs, segmentationVolume, referenceVolumes, options) {
+    if (referenceVolumes.length > 1) {
+        throw new Error('thresholding based on more than one reference volumes data is not supported yet');
+    }
+    const referenceVolume = referenceVolumes[0];
+    const annotations = annotationUIDs.map((annotationUID) => {
+        return annotation_1.state.getAnnotation(annotationUID);
+    });
+    _validateAnnotations(annotations);
+    const boundsIJK = (0, getBoundsIJKFromRectangleAnnotations_1.default)(annotations, referenceVolume, options);
+    const optionsToUse = {
+        lower: options.lower,
+        upper: options.upper,
+        overwrite: options.overwrite,
+        boundsIJK,
+    };
+    const outputSegmentationVolume = (0, thresholdVolumeByRange_1.default)(segmentationVolume, referenceVolume, optionsToUse);
+    return outputSegmentationVolume;
+}
+function _validateAnnotations(annotations) {
+    const validToolNames = [
+        tools_1.RectangleROIThresholdTool.toolName,
+        tools_1.RectangleROIStartEndThresholdTool.toolName,
+    ];
+    for (const annotation of annotations) {
+        const name = annotation.metadata.toolName;
+        if (!validToolNames.includes(name)) {
+            throw new Error('rectangleROIThresholdVolumeByRange only supports RectangleROIThreshold and RectangleROIStartEndThreshold annotations');
+        }
+    }
+}
+exports.default = rectangleROIThresholdVolumeByRange;
+//# sourceMappingURL=rectangleROIThresholdVolumeByRange.js.map

package/dist/cjs/utilities/segmentation/rectangleROIThresholdVolumeByRange.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.d.ts

@@ -1,24 +1,10 @@
 import type { Types } from '@cornerstonejs/core';
-import { ToolGroupSpecificRepresentation } from '../../types/SegmentationStateTypes';
+import { BoundsIJK } from '../../types';
 export declare type ThresholdRangeOptions = {
-    higherThreshold: number;
-    lowerThreshold: number;
-    numSlicesToProject?: number;
+    upper: number;
+    lower: number;
+    boundsIJK: BoundsIJK;
     overwrite: boolean;
 };
-export declare type AnnotationForThresholding = {
-    metadata: {
-        enabledElement: Types.IEnabledElement;
-    };
-    data: {
-        handles: {
-            points: Types.Point3[];
-        };
-        cachedStats?: {
-            projectionPoints?: Types.Point3[][];
-        };
-    };
-};
-declare function thresholdVolumeByRange(annotations: AnnotationForThresholding[], referenceVolumes: Types.IImageVolume[], segmentationRepresentation: ToolGroupSpecificRepresentation, options: ThresholdRangeOptions): Types.IImageVolume;
-export declare function extendBoundingBoxInSliceAxisIfNecessary(boundsIJK: [Types.Point2, Types.Point2, Types.Point2], numSlicesToProject: number): [Types.Point2, Types.Point2, Types.Point2];
+declare function thresholdVolumeByRange(segmentationVolume: Types.IImageVolume, referenceVolume: Types.IImageVolume, options: ThresholdRangeOptions): Types.IImageVolume;
 export default thresholdVolumeByRange;

package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.js

@@ -1,84 +1,28 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.extendBoundingBoxInSliceAxisIfNecessary = void 0;
-const core_1 = require("@cornerstonejs/core");
-const segmentation_1 = require("../segmentation");
 const utilities_1 = require("../../utilities");
 const triggerSegmentationEvents_1 = require("../../stateManagement/segmentation/triggerSegmentationEvents");
-const SegmentationState = __importStar(require("../../stateManagement/segmentation/segmentationState"));
-const { transformWorldToIndex } = core_1.utilities;
-function thresholdVolumeByRange(annotations, referenceVolumes, segmentationRepresentation, options) {
-    if (referenceVolumes.length > 1) {
-        throw new Error('thresholding more than one volumes is not supported yet');
-    }
-    const segmentation = SegmentationState.getSegmentation(segmentationRepresentation.segmentationId);
-    const { segmentationId } = segmentationRepresentation;
-    if (!segmentation) {
-        throw new Error('No Segmentation Found');
-    }
-    const { type, representationData } = segmentation;
-    const { volumeId } = representationData[type];
-    const segmentationVolume = core_1.cache.getVolume(volumeId);
+function thresholdVolumeByRange(segmentationVolume, referenceVolume, options) {
     const { scalarData, imageData: segmentationImageData } = segmentationVolume;
-    const { lowerThreshold, higherThreshold, numSlicesToProject, overwrite } = options;
+    const { overwrite, boundsIJK, upper, lower } = options;
+    const { imageData } = referenceVolume;
+    const referenceValues = imageData.getPointData().getScalars().getData();
     if (overwrite) {
         for (let i = 0; i < scalarData.length; i++) {
             scalarData[i] = 0;
         }
     }
-    annotations.forEach((annotation) => {
-        var _a, _b;
-        const { data } = annotation;
-        const { points } = data.handles;
-        const referenceVolume = referenceVolumes[0];
-        const { imageData, dimensions } = referenceVolume;
-        const values = imageData.getPointData().getScalars().getData();
-        let pointsToUse = points;
-        if ((_a = data.cachedStats) === null || _a === void 0 ? void 0 : _a.projectionPoints) {
-            const { projectionPoints } = data.cachedStats;
-            pointsToUse = [].concat(...projectionPoints);
+    const callback = ({ index, pointIJK }) => {
+        const offset = imageData.computeOffsetIndex(pointIJK);
+        const value = referenceValues[offset];
+        if (value <= lower || value >= upper) {
+            return;
         }
-        const rectangleCornersIJK = pointsToUse.map((world) => transformWorldToIndex(imageData, world));
-        let boundsIJK = (0, segmentation_1.getBoundingBoxAroundShape)(rectangleCornersIJK, dimensions);
-        if (numSlicesToProject && !((_b = data.cachedStats) === null || _b === void 0 ? void 0 : _b.projectionPoints)) {
-            boundsIJK = extendBoundingBoxInSliceAxisIfNecessary(boundsIJK, numSlicesToProject);
-        }
-        const callback = ({ index, pointIJK }) => {
-            const offset = imageData.computeOffsetIndex(pointIJK);
-            const value = values[offset];
-            if (value <= lowerThreshold || value >= higherThreshold) {
-                return;
-            }
-            scalarData[index] = 1;
-        };
-        (0, utilities_1.pointInShapeCallback)(segmentationImageData, () => true, callback, boundsIJK);
-    });
-    (0, triggerSegmentationEvents_1.triggerSegmentationDataModified)(segmentationId);
+        scalarData[index] = 1;
+    };
+    (0, utilities_1.pointInShapeCallback)(segmentationImageData, () => true, callback, boundsIJK);
+    (0, triggerSegmentationEvents_1.triggerSegmentationDataModified)(segmentationVolume.volumeId);
     return segmentationVolume;
 }
-function extendBoundingBoxInSliceAxisIfNecessary(boundsIJK, numSlicesToProject) {
-    const extendedBoundsIJK = (0, segmentation_1.extend2DBoundingBoxInViewAxis)(boundsIJK, numSlicesToProject);
-    return extendedBoundsIJK;
-}
-exports.extendBoundingBoxInSliceAxisIfNecessary = extendBoundingBoxInSliceAxisIfNecessary;
 exports.default = thresholdVolumeByRange;
 //# sourceMappingURL=thresholdVolumeByRange.js.map

package/dist/cjs/utilities/segmentation/thresholdVolumeByRange.js.map

@@ -1 +1 @@
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package/dist/esm/enums/Events.d.ts

@@ -10,6 +10,7 @@ declare enum Events {
     SEGMENTATION_MODIFIED = "CORNERSTONE_TOOLS_SEGMENTATION_MODIFIED",
     SEGMENTATION_RENDERED = "CORNERSTONE_TOOLS_SEGMENTATION_RENDERED",
     SEGMENTATION_REPRESENTATION_MODIFIED = "CORNERSTONE_TOOLS_SEGMENTATION_REPRESENTATION_MODIFIED",
+    SEGMENTATION_REMOVED = "CORNERSTONE_TOOLS_SEGMENTATION_REMOVED",
     SEGMENTATION_REPRESENTATION_REMOVED = "CORNERSTONE_TOOLS_SEGMENTATION_REPRESENTATION_REMOVED",
     SEGMENTATION_DATA_MODIFIED = "CORNERSTONE_TOOLS_SEGMENTATION_DATA_MODIFIED",
     KEY_DOWN = "CORNERSTONE_TOOLS_KEY_DOWN",