@cornerstonejs/tools 0.1.1

package/dist/esm/tools/segmentation/SphereScissorsTool.js

@@ -0,0 +1,193 @@
+import { cache, getEnabledElement, StackViewport, } from '@cornerstonejs/core';
+import { BaseTool } from '../base';
+import { fillInsideSphere } from './strategies/fillSphere';
+import { Events } from '../../enums';
+import { drawCircle as drawCircleSvg } from '../../drawingSvg';
+import { resetElementCursor, hideElementCursor, } from '../../cursors/elementCursor';
+import triggerAnnotationRenderForViewportUIDs from '../../utilities/triggerAnnotationRenderForViewportUIDs';
+import { segmentationColor, segmentLocking, segmentIndex as segmentIndexController, activeSegmentation, } from '../../stateManagement/segmentation';
+export default class SphereScissorsTool extends BaseTool {
+    constructor(toolProps = {}, defaultToolProps = {
+        supportedInteractionTypes: ['Mouse', 'Touch'],
+        configuration: {
+            strategies: {
+                FILL_INSIDE: fillInsideSphere,
+            },
+            defaultStrategy: 'FILL_INSIDE',
+            activeStrategy: 'FILL_INSIDE',
+        },
+    }) {
+        super(toolProps, defaultToolProps);
+        this.addNewAnnotation = (evt) => {
+            const eventDetail = evt.detail;
+            const { currentPoints, element } = eventDetail;
+            const worldPos = currentPoints.world;
+            const canvasPos = currentPoints.canvas;
+            const enabledElement = getEnabledElement(element);
+            const { viewport, renderingEngine } = enabledElement;
+            this.isDrawing = true;
+            const camera = viewport.getCamera();
+            const { viewPlaneNormal, viewUp } = camera;
+            const toolGroupUID = this.toolGroupUID;
+            const activeSegmentationInfo = activeSegmentation.getActiveSegmentationInfo(toolGroupUID);
+            if (!activeSegmentationInfo) {
+                throw new Error('No active segmentation detected, create one before using scissors tool');
+            }
+            const { volumeUID, segmentationDataUID } = activeSegmentationInfo;
+            const segmentIndex = segmentIndexController.getActiveSegmentIndex(toolGroupUID);
+            const segmentsLocked = segmentLocking.getSegmentsLockedForSegmentation(volumeUID);
+            const segmentColor = segmentationColor.getColorForSegmentIndex(toolGroupUID, activeSegmentationInfo.segmentationDataUID, segmentIndex);
+            const segmentation = cache.getVolume(volumeUID);
+            this.isDrawing = true;
+            const annotation = {
+                metadata: {
+                    viewPlaneNormal: [...viewPlaneNormal],
+                    viewUp: [...viewUp],
+                    FrameOfReferenceUID: viewport.getFrameOfReferenceUID(),
+                    referencedImageId: '',
+                    toolName: SphereScissorsTool.toolName,
+                    segmentColor,
+                },
+                data: {
+                    invalidated: true,
+                    handles: {
+                        points: [[...worldPos], [...worldPos], [...worldPos], [...worldPos]],
+                        activeHandleIndex: null,
+                    },
+                    cachedStats: {},
+                    highlighted: true,
+                },
+            };
+            const viewportUIDsToRender = [viewport.uid];
+            this.editData = {
+                annotation,
+                segmentation,
+                centerCanvas: canvasPos,
+                segmentIndex,
+                segmentsLocked,
+                segmentColor,
+                segmentationDataUID,
+                toolGroupUID,
+                viewportUIDsToRender,
+                handleIndex: 3,
+                movingTextBox: false,
+                newAnnotation: true,
+                hasMoved: false,
+            };
+            this._activateDraw(element);
+            hideElementCursor(element);
+            evt.preventDefault();
+            triggerAnnotationRenderForViewportUIDs(renderingEngine, viewportUIDsToRender);
+        };
+        this._mouseDragCallback = (evt) => {
+            this.isDrawing = true;
+            const eventDetail = evt.detail;
+            const { element } = eventDetail;
+            const { currentPoints } = eventDetail;
+            const currentCanvasPoints = currentPoints.canvas;
+            const enabledElement = getEnabledElement(element);
+            const { renderingEngine, viewport } = enabledElement;
+            const { canvasToWorld } = viewport;
+            const { annotation, viewportUIDsToRender, centerCanvas } = this.editData;
+            const { data } = annotation;
+            const dX = Math.abs(currentCanvasPoints[0] - centerCanvas[0]);
+            const dY = Math.abs(currentCanvasPoints[1] - centerCanvas[1]);
+            const radius = Math.sqrt(dX * dX + dY * dY);
+            const bottomCanvas = [
+                centerCanvas[0],
+                centerCanvas[1] + radius,
+            ];
+            const topCanvas = [centerCanvas[0], centerCanvas[1] - radius];
+            const leftCanvas = [centerCanvas[0] - radius, centerCanvas[1]];
+            const rightCanvas = [
+                centerCanvas[0] + radius,
+                centerCanvas[1],
+            ];
+            data.handles.points = [
+                canvasToWorld(bottomCanvas),
+                canvasToWorld(topCanvas),
+                canvasToWorld(leftCanvas),
+                canvasToWorld(rightCanvas),
+            ];
+            annotation.invalidated = true;
+            this.editData.hasMoved = true;
+            triggerAnnotationRenderForViewportUIDs(renderingEngine, viewportUIDsToRender);
+        };
+        this._mouseUpCallback = (evt) => {
+            const eventDetail = evt.detail;
+            const { element } = eventDetail;
+            const { annotation, newAnnotation, hasMoved, segmentation, segmentIndex, segmentsLocked, segmentationDataUID, } = this.editData;
+            const { data } = annotation;
+            const { viewPlaneNormal, viewUp } = annotation.metadata;
+            if (newAnnotation && !hasMoved) {
+                return;
+            }
+            annotation.highlighted = false;
+            data.handles.activeHandleIndex = null;
+            this._deactivateDraw(element);
+            resetElementCursor(element);
+            const enabledElement = getEnabledElement(element);
+            const { viewport } = enabledElement;
+            this.editData = null;
+            this.isDrawing = false;
+            if (viewport instanceof StackViewport) {
+                throw new Error('Not implemented yet');
+            }
+            const operationData = {
+                points: data.handles.points,
+                volume: segmentation,
+                segmentIndex,
+                segmentsLocked,
+                segmentationDataUID,
+                toolGroupUID: this.toolGroupUID,
+                viewPlaneNormal,
+                viewUp,
+            };
+            this.applyActiveStrategy(enabledElement, operationData);
+        };
+        this._activateDraw = (element) => {
+            element.addEventListener(Events.MOUSE_UP, this._mouseUpCallback);
+            element.addEventListener(Events.MOUSE_DRAG, this._mouseDragCallback);
+            element.addEventListener(Events.MOUSE_CLICK, this._mouseUpCallback);
+        };
+        this._deactivateDraw = (element) => {
+            element.removeEventListener(Events.MOUSE_UP, this._mouseUpCallback);
+            element.removeEventListener(Events.MOUSE_DRAG, this._mouseDragCallback);
+            element.removeEventListener(Events.MOUSE_CLICK, this._mouseUpCallback);
+        };
+        this.renderAnnotation = (enabledElement, svgDrawingHelper) => {
+            if (!this.editData) {
+                return;
+            }
+            const { viewport } = enabledElement;
+            const { viewportUIDsToRender } = this.editData;
+            if (!viewportUIDsToRender.includes(viewport.uid)) {
+                return;
+            }
+            const { annotation } = this.editData;
+            const toolMetadata = annotation.metadata;
+            const annotationUID = annotation.annotationUID;
+            const data = annotation.data;
+            const { points } = data.handles;
+            const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+            const bottom = canvasCoordinates[0];
+            const top = canvasCoordinates[1];
+            const center = [
+                Math.floor((bottom[0] + top[0]) / 2),
+                Math.floor((bottom[1] + top[1]) / 2),
+            ];
+            const radius = Math.abs(bottom[1] - Math.floor((bottom[1] + top[1]) / 2));
+            const color = `rgb(${toolMetadata.segmentColor.slice(0, 3)})`;
+            if (!viewport.getRenderingEngine()) {
+                console.warn('Rendering Engine has been destroyed');
+                return;
+            }
+            const circleUID = '0';
+            drawCircleSvg(svgDrawingHelper, SphereScissorsTool.toolName, annotationUID, circleUID, center, radius, {
+                color,
+            });
+        };
+    }
+}
+SphereScissorsTool.toolName = 'SphereScissor';
+//# sourceMappingURL=SphereScissorsTool.js.map

package/dist/esm/tools/segmentation/SphereScissorsTool.js.map

@@ -0,0 +1 @@
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package/dist/esm/tools/segmentation/strategies/eraseRectangle.d.ts

@@ -0,0 +1,13 @@
+import { ImageVolume } from '@cornerstonejs/core';
+import type { Types } from '@cornerstonejs/core';
+declare type EraseOperationData = {
+    toolGroupUID: string;
+    segmentationDataUID: string;
+    points: [Types.Point3, Types.Point3, Types.Point3, Types.Point3];
+    volume: ImageVolume;
+    constraintFn: (x: [number, number, number]) => boolean;
+    segmentsLocked: number[];
+};
+export declare function eraseInsideRectangle(enabledElement: Types.IEnabledElement, operationData: EraseOperationData): void;
+export declare function eraseOutsideRectangle(enabledElement: Types.IEnabledElement, operationData: EraseOperationData): void;
+export {};

package/dist/esm/tools/segmentation/strategies/eraseRectangle.js

@@ -0,0 +1,31 @@
+import { getBoundingBoxAroundShape } from '../../../utilities/segmentation';
+import transformPhysicalToIndex from '../../../utilities/transformPhysicalToIndex';
+import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
+import { pointInShapeCallback } from '../../../utilities';
+function eraseRectangle(enabledElement, operationData, inside = true) {
+    const { volume: segmentation, points, segmentsLocked, segmentationDataUID, toolGroupUID, } = operationData;
+    const { imageData, dimensions, scalarData } = segmentation;
+    const rectangleCornersIJK = points.map((world) => {
+        return transformPhysicalToIndex(imageData, world);
+    });
+    const boundsIJK = getBoundingBoxAroundShape(rectangleCornersIJK, dimensions);
+    if (boundsIJK.every(([min, max]) => min !== max)) {
+        throw new Error('Oblique segmentation tools are not supported yet');
+    }
+    const pointInShape = () => true;
+    const callback = ({ value, index }) => {
+        if (segmentsLocked.includes(value)) {
+            return;
+        }
+        scalarData[index] = 0;
+    };
+    pointInShapeCallback(imageData, pointInShape, callback, boundsIJK);
+    triggerSegmentationDataModified(toolGroupUID, segmentationDataUID);
+}
+export function eraseInsideRectangle(enabledElement, operationData) {
+    eraseRectangle(enabledElement, operationData, true);
+}
+export function eraseOutsideRectangle(enabledElement, operationData) {
+    eraseRectangle(enabledElement, operationData, false);
+}
+//# sourceMappingURL=eraseRectangle.js.map

package/dist/esm/tools/segmentation/strategies/eraseRectangle.js.map

@@ -0,0 +1 @@
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package/dist/esm/tools/segmentation/strategies/fillCircle.d.ts

@@ -0,0 +1,15 @@
+import type { Types } from '@cornerstonejs/core';
+declare type OperationData = {
+    toolGroupUID: string;
+    segmentationDataUID: string;
+    points: any;
+    volume: Types.IImageVolume;
+    segmentIndex: number;
+    segmentsLocked: number[];
+    viewPlaneNormal: number[];
+    viewUp: number[];
+    constraintFn: () => boolean;
+};
+export declare function fillInsideCircle(enabledElement: Types.IEnabledElement, operationData: OperationData): void;
+export declare function fillOutsideCircle(enabledElement: Types.IEnabledElement, operationData: OperationData): void;
+export {};

package/dist/esm/tools/segmentation/strategies/fillCircle.js

@@ -0,0 +1,49 @@
+import { vec3 } from 'gl-matrix';
+import { getCanvasEllipseCorners, pointInEllipse, } from '../../../utilities/math/ellipse';
+import { getBoundingBoxAroundShape } from '../../../utilities/segmentation';
+import transformPhysicalToIndex from '../../../utilities/transformPhysicalToIndex';
+import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
+import { pointInShapeCallback } from '../../../utilities';
+function fillCircle(enabledElement, operationData, inside = true) {
+    const { volume: segmentationVolume, points, segmentsLocked, segmentIndex, toolGroupUID, segmentationDataUID, } = operationData;
+    const { imageData, dimensions, scalarData } = segmentationVolume;
+    const { viewport } = enabledElement;
+    const center = vec3.fromValues(0, 0, 0);
+    points.forEach((point) => {
+        vec3.add(center, center, point);
+    });
+    vec3.scale(center, center, 1 / points.length);
+    const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+    const [topLeftCanvas, bottomRightCanvas] = getCanvasEllipseCorners(canvasCoordinates);
+    const topLeftWorld = viewport.canvasToWorld(topLeftCanvas);
+    const bottomRightWorld = viewport.canvasToWorld(bottomRightCanvas);
+    const ellipsoidCornersIJK = [
+        transformPhysicalToIndex(imageData, topLeftWorld),
+        transformPhysicalToIndex(imageData, bottomRightWorld),
+    ];
+    const boundsIJK = getBoundingBoxAroundShape(ellipsoidCornersIJK, dimensions);
+    if (boundsIJK.every(([min, max]) => min !== max)) {
+        throw new Error('Oblique segmentation tools are not supported yet');
+    }
+    const ellipseObj = {
+        center: center,
+        xRadius: Math.abs(topLeftWorld[0] - bottomRightWorld[0]) / 2,
+        yRadius: Math.abs(topLeftWorld[1] - bottomRightWorld[1]) / 2,
+        zRadius: Math.abs(topLeftWorld[2] - bottomRightWorld[2]) / 2,
+    };
+    const callback = ({ value, index }) => {
+        if (segmentsLocked.includes(value)) {
+            return;
+        }
+        scalarData[index] = segmentIndex;
+    };
+    pointInShapeCallback(imageData, (pointLPS, pointIJK) => pointInEllipse(ellipseObj, pointLPS), callback, boundsIJK);
+    triggerSegmentationDataModified(toolGroupUID, segmentationDataUID);
+}
+export function fillInsideCircle(enabledElement, operationData) {
+    fillCircle(enabledElement, operationData, true);
+}
+export function fillOutsideCircle(enabledElement, operationData) {
+    fillCircle(enabledElement, operationData, false);
+}
+//# sourceMappingURL=fillCircle.js.map

package/dist/esm/tools/segmentation/strategies/fillCircle.js.map

@@ -0,0 +1 @@
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package/dist/esm/tools/segmentation/strategies/fillRectangle.d.ts

@@ -0,0 +1,14 @@
+import { ImageVolume } from '@cornerstonejs/core';
+import type { Types } from '@cornerstonejs/core';
+declare type OperationData = {
+    toolGroupUID: string;
+    segmentationDataUID: string;
+    points: [Types.Point3, Types.Point3, Types.Point3, Types.Point3];
+    volume: ImageVolume;
+    constraintFn: (x: [number, number, number]) => boolean;
+    segmentIndex: number;
+    segmentsLocked: number[];
+};
+export declare function fillInsideRectangle(enabledElement: Types.IEnabledElement, operationData: OperationData): void;
+export declare function fillOutsideRectangle(enabledElement: Types.IEnabledElement, operationData: OperationData): void;
+export {};

package/dist/esm/tools/segmentation/strategies/fillRectangle.js

@@ -0,0 +1,42 @@
+import { getBoundingBoxAroundShape } from '../../../utilities/segmentation';
+import { pointInShapeCallback } from '../../../utilities';
+import transformPhysicalToIndex from '../../../utilities/transformPhysicalToIndex';
+import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
+function fillRectangle(enabledElement, operationData, inside = true) {
+    const { volume: segmentation, points, segmentsLocked, segmentIndex, segmentationDataUID, toolGroupUID, constraintFn, } = operationData;
+    const { imageData, dimensions, scalarData } = segmentation;
+    let rectangleCornersIJK = points.map((world) => {
+        return transformPhysicalToIndex(imageData, world);
+    });
+    rectangleCornersIJK = rectangleCornersIJK.map((point) => {
+        return point.map((coord) => {
+            return Math.round(coord);
+        });
+    });
+    const boundsIJK = getBoundingBoxAroundShape(rectangleCornersIJK, dimensions);
+    if (boundsIJK.every(([min, max]) => min !== max)) {
+        throw new Error('Oblique segmentation tools are not supported yet');
+    }
+    const pointInRectangle = () => true;
+    const callback = ({ value, index, pointIJK }) => {
+        if (segmentsLocked.includes(value)) {
+            return;
+        }
+        if (!constraintFn) {
+            scalarData[index] = segmentIndex;
+            return;
+        }
+        if (constraintFn(pointIJK)) {
+            scalarData[index] = segmentIndex;
+        }
+    };
+    pointInShapeCallback(imageData, pointInRectangle, callback, boundsIJK);
+    triggerSegmentationDataModified(toolGroupUID, segmentationDataUID);
+}
+export function fillInsideRectangle(enabledElement, operationData) {
+    fillRectangle(enabledElement, operationData, true);
+}
+export function fillOutsideRectangle(enabledElement, operationData) {
+    fillRectangle(enabledElement, operationData, false);
+}
+//# sourceMappingURL=fillRectangle.js.map

package/dist/esm/tools/segmentation/strategies/fillRectangle.js.map

@@ -0,0 +1 @@
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package/dist/esm/tools/segmentation/strategies/fillSphere.d.ts

@@ -0,0 +1,15 @@
+import type { Types } from '@cornerstonejs/core';
+declare type OperationData = {
+    points: [Types.Point3, Types.Point3, Types.Point3, Types.Point3];
+    volume: Types.IImageVolume;
+    toolGroupUID: string;
+    segmentIndex: number;
+    segmentationDataUID: string;
+    segmentsLocked: number[];
+    viewPlaneNormal: Types.Point3;
+    viewUp: Types.Point3;
+    constraintFn: () => boolean;
+};
+export declare function fillInsideSphere(enabledElement: Types.IEnabledElement, operationData: OperationData): void;
+export declare function fillOutsideSphere(enabledElement: Types.IEnabledElement, operationData: OperationData): void;
+export {};

package/dist/esm/tools/segmentation/strategies/fillSphere.js

@@ -0,0 +1,22 @@
+import { triggerSegmentationDataModified } from '../../../stateManagement/segmentation/triggerSegmentationEvents';
+import { pointInSurroundingSphereCallback } from '../../../utilities';
+function fillSphere(enabledElement, operationData, _inside = true) {
+    const { viewport } = enabledElement;
+    const { volume: segmentation, segmentsLocked, segmentIndex, toolGroupUID, segmentationDataUID, points, } = operationData;
+    const { scalarData, imageData } = segmentation;
+    const callback = ({ index, value }) => {
+        if (segmentsLocked.includes(value)) {
+            return;
+        }
+        scalarData[index] = segmentIndex;
+    };
+    pointInSurroundingSphereCallback(viewport, imageData, [points[0], points[1]], callback);
+    triggerSegmentationDataModified(toolGroupUID, segmentationDataUID);
+}
+export function fillInsideSphere(enabledElement, operationData) {
+    fillSphere(enabledElement, operationData, true);
+}
+export function fillOutsideSphere(enabledElement, operationData) {
+    fillSphere(enabledElement, operationData, false);
+}
+//# sourceMappingURL=fillSphere.js.map

package/dist/esm/tools/segmentation/strategies/fillSphere.js.map

@@ -0,0 +1 @@
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package/dist/esm/tools/segmentation/strategies/index.d.ts

@@ -0,0 +1,3 @@
+import { fillInsideRectangle, fillOutsideRectangle } from './fillRectangle';
+import { fillInsideCircle, fillOutsideCircle } from './fillCircle';
+export { fillInsideRectangle, fillOutsideRectangle, fillInsideCircle, fillOutsideCircle, };

package/dist/esm/tools/segmentation/strategies/index.js

@@ -0,0 +1,4 @@
+import { fillInsideRectangle, fillOutsideRectangle } from './fillRectangle';
+import { fillInsideCircle, fillOutsideCircle } from './fillCircle';
+export { fillInsideRectangle, fillOutsideRectangle, fillInsideCircle, fillOutsideCircle, };
+//# sourceMappingURL=index.js.map

package/dist/esm/tools/segmentation/strategies/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../../src/tools/segmentation/strategies/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAA;AAC3E,OAAO,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA;AAElE,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,gBAAgB,EAChB,iBAAiB,GAClB,CAAA"}

package/dist/esm/tsdoc-metadata.json

@@ -0,0 +1,11 @@
+// This file is read by tools that parse documentation comments conforming to the TSDoc standard.
+// It should be published with your NPM package.  It should not be tracked by Git.
+{
+  "tsdocVersion": "0.12",
+  "toolPackages": [
+    {
+      "packageName": "@microsoft/api-extractor",
+      "packageVersion": "7.19.5"
+    }
+  ]
+}

package/dist/esm/types/AnnotationTypes.d.ts

@@ -0,0 +1,43 @@
+import type { Types } from '@cornerstonejs/core';
+declare type Annotation = {
+    annotationUID?: string;
+    highlighted?: boolean;
+    isLocked?: boolean;
+    invalidated?: boolean;
+    metadata: {
+        cameraPosition?: Types.Point3;
+        cameraFocalPoint?: Types.Point3;
+        viewPlaneNormal?: Types.Point3;
+        viewUp?: Types.Point3;
+        FrameOfReferenceUID: string;
+        toolName: string;
+        referencedImageId?: string;
+        volumeUID?: string;
+    };
+    data: {
+        handles?: {
+            points?: Types.Point3[];
+            activeHandleIndex?: number | null;
+            textBox?: {
+                hasMoved: boolean;
+                worldPosition: Types.Point3;
+                worldBoundingBox: {
+                    topLeft: Types.Point3;
+                    topRight: Types.Point3;
+                    bottomLeft: Types.Point3;
+                    bottomRight: Types.Point3;
+                };
+            };
+            [key: string]: any;
+        };
+        cachedStats?: unknown;
+    };
+};
+declare type Annotations = Array<Annotation>;
+declare type FrameOfReferenceSpecificAnnotations = {
+    [key: string]: Annotations;
+};
+declare type AnnotationState = {
+    [key: string]: FrameOfReferenceSpecificAnnotations;
+};
+export { FrameOfReferenceSpecificAnnotations, AnnotationState, Annotations, Annotation, };

package/dist/esm/types/AnnotationTypes.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=AnnotationTypes.js.map

package/dist/esm/types/AnnotationTypes.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnnotationTypes.js","sourceRoot":"","sources":["../../../src/types/AnnotationTypes.ts"],"names":[],"mappings":""}

package/dist/esm/types/CursorTypes.d.ts

@@ -0,0 +1,11 @@
+export declare type SVGPoint = {
+    x: number;
+    y: number;
+};
+export declare type SVGCursorDescriptor = {
+    iconContent: string;
+    iconSize: number;
+    viewBox: SVGPoint;
+    mousePoint: SVGPoint;
+    mousePointerGroupString: string;
+};

package/dist/esm/types/CursorTypes.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=CursorTypes.js.map

package/dist/esm/types/CursorTypes.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"CursorTypes.js","sourceRoot":"","sources":["../../../src/types/CursorTypes.ts"],"names":[],"mappings":""}