@cornerstonejs/tools 0.1.1

package/dist/cjs/tools/segmentation/RectangleRoiStartEndThresholdTool.js

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+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const core_1 = require("@cornerstonejs/core");
+const gl_matrix_1 = require("gl-matrix");
+const enums_1 = require("../../enums");
+const stateManagement_1 = require("../../stateManagement");
+const annotationLocking_1 = require("../../stateManagement/annotation/annotationLocking");
+const drawingSvg_1 = require("../../drawingSvg");
+const viewportFilters_1 = require("../../utilities/viewportFilters");
+const throttle_1 = __importDefault(require("../../utilities/throttle"));
+const elementCursor_1 = require("../../cursors/elementCursor");
+const triggerAnnotationRenderForViewportUIDs_1 = __importDefault(require("../../utilities/triggerAnnotationRenderForViewportUIDs"));
+const RectangleRoiTool_1 = __importDefault(require("../annotation/RectangleRoiTool"));
+class RectangleRoiStartEndThresholdTool extends RectangleRoiTool_1.default {
+    constructor(toolProps = {}, defaultToolProps = {
+        configuration: {
+            numSlicesToPropagate: 10,
+        },
+    }) {
+        super(toolProps, defaultToolProps);
+        this.addNewAnnotation = (evt) => {
+            const eventDetail = evt.detail;
+            const { currentPoints, element } = eventDetail;
+            const worldPos = currentPoints.world;
+            const enabledElement = (0, core_1.getEnabledElement)(element);
+            const { viewport, renderingEngine } = enabledElement;
+            this.isDrawing = true;
+            const camera = viewport.getCamera();
+            const { viewPlaneNormal, viewUp } = camera;
+            let referencedImageId, imageVolume, volumeUID;
+            if (viewport instanceof core_1.StackViewport) {
+                throw new Error('Stack Viewport Not implemented');
+            }
+            else {
+                volumeUID = this.getTargetUID(viewport);
+                imageVolume = core_1.cache.getVolume(volumeUID);
+                referencedImageId = core_1.utilities.getClosestImageId(imageVolume, worldPos, viewPlaneNormal, viewUp);
+            }
+            if (referencedImageId) {
+                const colonIndex = referencedImageId.indexOf(':');
+                referencedImageId = referencedImageId.substring(colonIndex + 1);
+            }
+            else {
+                throw new Error('This tool does not work on non-acquisition planes');
+            }
+            const startIndex = viewport.getCurrentImageIdIndex();
+            const spacingInNormal = core_1.utilities.getSpacingInNormalDirection(imageVolume, viewPlaneNormal);
+            const endIndex = this._getEndSliceIndex(imageVolume, worldPos, spacingInNormal, viewPlaneNormal);
+            const annotation = {
+                highlighted: true,
+                invalidated: true,
+                metadata: {
+                    viewPlaneNormal: [...viewPlaneNormal],
+                    enabledElement,
+                    viewUp: [...viewUp],
+                    FrameOfReferenceUID: viewport.getFrameOfReferenceUID(),
+                    referencedImageId,
+                    toolName: RectangleRoiStartEndThresholdTool.toolName,
+                    volumeUID,
+                    spacingInNormal,
+                },
+                data: {
+                    label: '',
+                    startSlice: startIndex,
+                    endSlice: endIndex,
+                    cachedStats: {
+                        projectionPoints: [],
+                        projectionPointsImageIds: [referencedImageId],
+                    },
+                    handles: {
+                        textBox: {
+                            hasMoved: false,
+                            worldPosition: null,
+                            worldBoundingBox: null,
+                        },
+                        points: [
+                            [...worldPos],
+                            [...worldPos],
+                            [...worldPos],
+                            [...worldPos],
+                        ],
+                        activeHandleIndex: null,
+                    },
+                    labelmapUID: null,
+                },
+            };
+            this._computeProjectionPoints(annotation, imageVolume);
+            core_1.Settings.getObjectSettings(annotation, RectangleRoiStartEndThresholdTool);
+            (0, stateManagement_1.addAnnotation)(element, annotation);
+            const viewportUIDsToRender = (0, viewportFilters_1.getViewportUIDsWithToolToRender)(element, RectangleRoiStartEndThresholdTool.toolName);
+            this.editData = {
+                annotation,
+                viewportUIDsToRender,
+                handleIndex: 3,
+                newAnnotation: true,
+                hasMoved: false,
+            };
+            this._activateDraw(element);
+            (0, elementCursor_1.hideElementCursor)(element);
+            evt.preventDefault();
+            (0, triggerAnnotationRenderForViewportUIDs_1.default)(renderingEngine, viewportUIDsToRender);
+            return annotation;
+        };
+        this.renderAnnotation = (enabledElement, svgDrawingHelper) => {
+            const annotations = (0, stateManagement_1.getAnnotations)(enabledElement.viewport.element, RectangleRoiStartEndThresholdTool.toolName);
+            if (!(annotations === null || annotations === void 0 ? void 0 : annotations.length)) {
+                return;
+            }
+            const { viewport } = enabledElement;
+            const sliceIndex = viewport.getCurrentImageIdIndex();
+            for (let i = 0; i < annotations.length; i++) {
+                const annotation = annotations[i];
+                const settings = core_1.Settings.getObjectSettings(annotation, RectangleRoiStartEndThresholdTool);
+                const annotationUID = annotation.annotationUID;
+                const data = annotation.data;
+                const { startSlice, endSlice } = data;
+                const { points, activeHandleIndex } = data.handles;
+                const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+                const lineWidth = this.getStyle(settings, 'lineWidth', annotation);
+                const lineDash = this.getStyle(settings, 'lineDash', annotation);
+                const color = this.getStyle(settings, 'color', annotation);
+                if (sliceIndex < Math.min(startSlice, endSlice) ||
+                    sliceIndex > Math.max(startSlice, endSlice)) {
+                    continue;
+                }
+                if (annotation.invalidated) {
+                    this._throttledCalculateCachedStats(annotation, enabledElement);
+                }
+                let firstOrLastSlice = false;
+                if (sliceIndex === startSlice || sliceIndex === endSlice) {
+                    firstOrLastSlice = true;
+                }
+                if (!viewport.getRenderingEngine()) {
+                    console.warn('Rendering Engine has been destroyed');
+                    return;
+                }
+                let activeHandleCanvasCoords;
+                if (!(0, annotationLocking_1.isAnnotationLocked)(annotation) &&
+                    !this.editData &&
+                    activeHandleIndex !== null &&
+                    firstOrLastSlice) {
+                    activeHandleCanvasCoords = [canvasCoordinates[activeHandleIndex]];
+                }
+                if (activeHandleCanvasCoords) {
+                    const handleGroupUID = '0';
+                    (0, drawingSvg_1.drawHandles)(svgDrawingHelper, RectangleRoiStartEndThresholdTool.toolName, annotationUID, handleGroupUID, activeHandleCanvasCoords, {
+                        color,
+                    });
+                }
+                let lineDashToUse = lineDash;
+                if (!firstOrLastSlice) {
+                    lineDashToUse = 2;
+                }
+                const rectangleUID = '0';
+                (0, drawingSvg_1.drawRect)(svgDrawingHelper, RectangleRoiStartEndThresholdTool.toolName, annotationUID, rectangleUID, canvasCoordinates[0], canvasCoordinates[3], {
+                    color,
+                    lineDash: lineDashToUse,
+                    lineWidth,
+                });
+            }
+        };
+        this._throttledCalculateCachedStats = (0, throttle_1.default)(this._calculateCachedStatsTool, 100, { trailing: true });
+    }
+    _computeProjectionPoints(annotation, imageVolume) {
+        const { data, metadata } = annotation;
+        const { viewPlaneNormal, spacingInNormal } = metadata;
+        const { imageData } = imageVolume;
+        const { startSlice, endSlice } = data;
+        const { projectionPoints } = data.cachedStats;
+        const { points } = data.handles;
+        const startIJK = gl_matrix_1.vec3.create();
+        imageData.worldToIndexVec3(points[0], startIJK);
+        if (startIJK[2] !== startSlice) {
+            throw new Error('Start slice does not match');
+        }
+        const endIJK = gl_matrix_1.vec3.fromValues(startIJK[0], startIJK[1], endSlice);
+        const startWorld = gl_matrix_1.vec3.create();
+        imageData.indexToWorldVec3(startIJK, startWorld);
+        const endWorld = gl_matrix_1.vec3.create();
+        imageData.indexToWorldVec3(endIJK, endWorld);
+        const distance = gl_matrix_1.vec3.distance(startWorld, endWorld);
+        const newProjectionPoints = [];
+        for (let dist = 0; dist < distance; dist += spacingInNormal) {
+            newProjectionPoints.push(points.map((point) => {
+                const newPoint = gl_matrix_1.vec3.create();
+                gl_matrix_1.vec3.scaleAndAdd(newPoint, point, viewPlaneNormal, dist);
+                return Array.from(newPoint);
+            }));
+        }
+        data.cachedStats.projectionPoints = newProjectionPoints;
+        const projectionPointsImageIds = [];
+        for (const RectanglePoints of newProjectionPoints) {
+            const imageId = core_1.utilities.getClosestImageId(imageVolume, RectanglePoints[0], viewPlaneNormal, metadata.viewUp);
+            projectionPointsImageIds.push(imageId);
+        }
+        data.cachedStats.projectionPointsImageIds = projectionPointsImageIds;
+    }
+    _calculateCachedStatsTool(annotation, enabledElement) {
+        const data = annotation.data;
+        const { viewportUID, renderingEngineUID, viewport } = enabledElement;
+        const { cachedStats } = data;
+        const volumeUID = this.getTargetUID(viewport);
+        const imageVolume = core_1.cache.getVolume(volumeUID);
+        this._computeProjectionPoints(annotation, imageVolume);
+        annotation.invalidated = false;
+        const eventType = enums_1.Events.ANNOTATION_MODIFIED;
+        const eventDetail = {
+            annotation,
+            viewportUID,
+            renderingEngineUID,
+        };
+        (0, core_1.triggerEvent)(core_1.eventTarget, eventType, eventDetail);
+        return cachedStats;
+    }
+    _getEndSliceIndex(imageVolume, worldPos, spacingInNormal, viewPlaneNormal) {
+        const numSlicesToPropagate = this.configuration.numSlicesToPropagate;
+        const endPos = gl_matrix_1.vec3.create();
+        gl_matrix_1.vec3.scaleAndAdd(endPos, worldPos, viewPlaneNormal, numSlicesToPropagate * spacingInNormal);
+        const halfSpacingInNormalDirection = spacingInNormal / 2;
+        const { imageIds } = imageVolume;
+        let imageIdIndex;
+        for (let i = 0; i < imageIds.length; i++) {
+            const imageId = imageIds[i];
+            const { imagePositionPatient } = core_1.metaData.get('imagePlaneModule', imageId);
+            const dir = gl_matrix_1.vec3.create();
+            gl_matrix_1.vec3.sub(dir, endPos, imagePositionPatient);
+            const dot = gl_matrix_1.vec3.dot(dir, viewPlaneNormal);
+            if (Math.abs(dot) < halfSpacingInNormalDirection) {
+                imageIdIndex = i;
+            }
+        }
+        return imageIdIndex;
+    }
+}
+exports.default = RectangleRoiStartEndThresholdTool;
+RectangleRoiStartEndThresholdTool.toolName = 'RectangleRoiStartEndThreshold';
+//# sourceMappingURL=RectangleRoiStartEndThresholdTool.js.map

package/dist/cjs/tools/segmentation/RectangleRoiStartEndThresholdTool.js.map

@@ -0,0 +1 @@
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package/dist/cjs/tools/segmentation/RectangleRoiThresholdTool.d.ts

@@ -0,0 +1,65 @@
+import type { Types } from '@cornerstonejs/core';
+import { Annotation, PublicToolProps, ToolProps, EventTypes } from '../../types';
+import RectangleRoiTool from '../annotation/RectangleRoiTool';
+export interface RectangleRoiThresholdAnnotation extends Annotation {
+    metadata: {
+        cameraPosition?: Types.Point3;
+        cameraFocalPoint?: Types.Point3;
+        viewPlaneNormal?: Types.Point3;
+        viewUp?: Types.Point3;
+        annotationUID?: string;
+        FrameOfReferenceUID: string;
+        referencedImageId?: string;
+        toolName: string;
+        enabledElement: any;
+        volumeUID: string;
+    };
+    data: {
+        label: string;
+        handles: {
+            points: Types.Point3[];
+            activeHandleIndex: number | null;
+        };
+    };
+}
+export default class RectangleRoiThresholdTool extends RectangleRoiTool {
+    static toolName: string;
+    _throttledCalculateCachedStats: any;
+    editData: {
+        annotation: any;
+        viewportUIDsToRender: string[];
+        handleIndex?: number;
+        newAnnotation?: boolean;
+        hasMoved?: boolean;
+    } | null;
+    isDrawing: boolean;
+    isHandleOutsideImage: boolean;
+    constructor(toolProps?: PublicToolProps, defaultToolProps?: ToolProps);
+    addNewAnnotation: (evt: EventTypes.MouseDownActivateEventType) => {
+        highlighted: boolean;
+        invalidated: boolean;
+        metadata: {
+            viewPlaneNormal: Types.Point3;
+            enabledElement: Types.IEnabledElement;
+            viewUp: Types.Point3;
+            FrameOfReferenceUID: string;
+            referencedImageId: any;
+            toolName: string;
+            volumeUID: any;
+        };
+        data: {
+            label: string;
+            handles: {
+                textBox: {
+                    hasMoved: boolean;
+                    worldPosition: any;
+                    worldBoundingBox: any;
+                };
+                points: Types.Point3[];
+                activeHandleIndex: any;
+            };
+            segmentationUID: any;
+        };
+    };
+    renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: any) => void;
+}

package/dist/cjs/tools/segmentation/RectangleRoiThresholdTool.js

@@ -0,0 +1,150 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const core_1 = require("@cornerstonejs/core");
+const stateManagement_1 = require("../../stateManagement");
+const annotationLocking_1 = require("../../stateManagement/annotation/annotationLocking");
+const enums_1 = require("../../enums");
+const drawingSvg_1 = require("../../drawingSvg");
+const viewportFilters_1 = require("../../utilities/viewportFilters");
+const elementCursor_1 = require("../../cursors/elementCursor");
+const triggerAnnotationRenderForViewportUIDs_1 = __importDefault(require("../../utilities/triggerAnnotationRenderForViewportUIDs"));
+const RectangleRoiTool_1 = __importDefault(require("../annotation/RectangleRoiTool"));
+class RectangleRoiThresholdTool extends RectangleRoiTool_1.default {
+    constructor(toolProps = {}, defaultToolProps = {
+        supportedInteractionTypes: ['Mouse', 'Touch'],
+        configuration: {
+            shadow: true,
+            preventHandleOutsideImage: false,
+        },
+    }) {
+        super(toolProps, defaultToolProps);
+        this.addNewAnnotation = (evt) => {
+            const eventDetail = evt.detail;
+            const { currentPoints, element } = eventDetail;
+            const worldPos = currentPoints.world;
+            const enabledElement = (0, core_1.getEnabledElement)(element);
+            const { viewport, renderingEngine } = enabledElement;
+            this.isDrawing = true;
+            const camera = viewport.getCamera();
+            const { viewPlaneNormal, viewUp } = camera;
+            let referencedImageId, volumeUID;
+            if (viewport instanceof core_1.StackViewport) {
+                referencedImageId =
+                    viewport.getCurrentImageId && viewport.getCurrentImageId();
+            }
+            else {
+                volumeUID = this.getTargetUID(viewport);
+                const imageVolume = core_1.cache.getVolume(volumeUID);
+                referencedImageId = core_1.utilities.getClosestImageId(imageVolume, worldPos, viewPlaneNormal, viewUp);
+            }
+            if (referencedImageId) {
+                const colonIndex = referencedImageId.indexOf(':');
+                referencedImageId = referencedImageId.substring(colonIndex + 1);
+            }
+            const annotation = {
+                highlighted: true,
+                invalidated: true,
+                metadata: {
+                    viewPlaneNormal: [...viewPlaneNormal],
+                    enabledElement,
+                    viewUp: [...viewUp],
+                    FrameOfReferenceUID: viewport.getFrameOfReferenceUID(),
+                    referencedImageId,
+                    toolName: RectangleRoiThresholdTool.toolName,
+                    volumeUID,
+                },
+                data: {
+                    label: '',
+                    handles: {
+                        textBox: {
+                            hasMoved: false,
+                            worldPosition: null,
+                            worldBoundingBox: null,
+                        },
+                        points: [
+                            [...worldPos],
+                            [...worldPos],
+                            [...worldPos],
+                            [...worldPos],
+                        ],
+                        activeHandleIndex: null,
+                    },
+                    segmentationUID: null,
+                },
+            };
+            core_1.Settings.getObjectSettings(annotation, RectangleRoiThresholdTool);
+            (0, stateManagement_1.addAnnotation)(element, annotation);
+            const viewportUIDsToRender = (0, viewportFilters_1.getViewportUIDsWithToolToRender)(element, RectangleRoiThresholdTool.toolName);
+            this.editData = {
+                annotation,
+                viewportUIDsToRender,
+                handleIndex: 3,
+                newAnnotation: true,
+                hasMoved: false,
+            };
+            this._activateDraw(element);
+            (0, elementCursor_1.hideElementCursor)(element);
+            evt.preventDefault();
+            (0, triggerAnnotationRenderForViewportUIDs_1.default)(renderingEngine, viewportUIDsToRender);
+            return annotation;
+        };
+        this.renderAnnotation = (enabledElement, svgDrawingHelper) => {
+            const { viewport, renderingEngineUID } = enabledElement;
+            const { element } = viewport;
+            let annotations = (0, stateManagement_1.getAnnotations)(element, RectangleRoiThresholdTool.toolName);
+            if (!(annotations === null || annotations === void 0 ? void 0 : annotations.length)) {
+                return;
+            }
+            annotations = this.filterInteractableAnnotationsForElement(element, annotations);
+            if (!(annotations === null || annotations === void 0 ? void 0 : annotations.length)) {
+                return;
+            }
+            for (let i = 0; i < annotations.length; i++) {
+                const annotation = annotations[i];
+                const settings = core_1.Settings.getObjectSettings(annotation, RectangleRoiThresholdTool);
+                const annotationUID = annotation.annotationUID;
+                const data = annotation.data;
+                const { points, activeHandleIndex } = data.handles;
+                const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
+                const lineWidth = this.getStyle(settings, 'lineWidth', annotation);
+                const lineDash = this.getStyle(settings, 'lineDash', annotation);
+                const color = this.getStyle(settings, 'color', annotation);
+                if (!viewport.getRenderingEngine()) {
+                    console.warn('Rendering Engine has been destroyed');
+                    return;
+                }
+                const eventType = enums_1.Events.ANNOTATION_MODIFIED;
+                const eventDetail = {
+                    annotation,
+                    viewportUID: viewport.uid,
+                    renderingEngineUID,
+                };
+                (0, core_1.triggerEvent)(core_1.eventTarget, eventType, eventDetail);
+                let activeHandleCanvasCoords;
+                if (!(0, annotationLocking_1.isAnnotationLocked)(annotation) &&
+                    !this.editData &&
+                    activeHandleIndex !== null) {
+                    activeHandleCanvasCoords = [canvasCoordinates[activeHandleIndex]];
+                }
+                if (activeHandleCanvasCoords) {
+                    const handleGroupUID = '0';
+                    (0, drawingSvg_1.drawHandles)(svgDrawingHelper, RectangleRoiThresholdTool.toolName, annotationUID, handleGroupUID, activeHandleCanvasCoords, {
+                        color,
+                    });
+                }
+                const rectangleUID = '0';
+                (0, drawingSvg_1.drawRect)(svgDrawingHelper, RectangleRoiThresholdTool.toolName, annotationUID, rectangleUID, canvasCoordinates[0], canvasCoordinates[3], {
+                    color,
+                    lineDash,
+                    lineWidth,
+                });
+            }
+        };
+    }
+}
+exports.default = RectangleRoiThresholdTool;
+RectangleRoiThresholdTool.toolName = 'RectangleRoiThreshold';
+//# sourceMappingURL=RectangleRoiThresholdTool.js.map

package/dist/cjs/tools/segmentation/RectangleRoiThresholdTool.js.map

@@ -0,0 +1 @@
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package/dist/cjs/tools/segmentation/RectangleScissorsTool.d.ts

@@ -0,0 +1,29 @@
+import type { Types } from '@cornerstonejs/core';
+import { BaseTool } from '../base';
+import { PublicToolProps, ToolProps, EventTypes } from '../../types';
+export default class RectangleScissorsTool extends BaseTool {
+    static toolName: string;
+    _throttledCalculateCachedStats: any;
+    editData: {
+        annotation: any;
+        segmentationDataUID: string;
+        segmentation: any;
+        segmentIndex: number;
+        segmentsLocked: number[];
+        segmentColor: [number, number, number, number];
+        viewportUIDsToRender: string[];
+        handleIndex?: number;
+        movingTextBox: boolean;
+        newAnnotation?: boolean;
+        hasMoved?: boolean;
+    } | null;
+    isDrawing: boolean;
+    isHandleOutsideImage: boolean;
+    constructor(toolProps?: PublicToolProps, defaultToolProps?: ToolProps);
+    addNewAnnotation: (evt: EventTypes.MouseDownActivateEventType) => void;
+    _mouseDragCallback: (evt: EventTypes.MouseDragEventType) => void;
+    _mouseUpCallback: (evt: EventTypes.MouseUpEventType | EventTypes.MouseClickEventType) => void;
+    _activateDraw: (element: any) => void;
+    _deactivateDraw: (element: any) => void;
+    renderAnnotation: (enabledElement: Types.IEnabledElement, svgDrawingHelper: any) => void;
+}