@cornerstonejs/core 0.43.0 → 0.44.0

package/dist/cjs/utilities/calibratedPixelSpacingMetadataProvider.d.ts

@@ -1,5 +1,10 @@
+export declare type CalibratedPixelValue = {
+    rowPixelSpacing: number;
+    columnPixelSpacing: number;
+    appliedSpacing?: CalibratedPixelValue;
+};
 declare const metadataProvider: {
-    add: (imageId: string, payload: [number, number]) => void;
-    get: (type: string, imageId: string) => [number, number];
+    add: (imageId: string, payload: CalibratedPixelValue) => void;
+    get: (type: string, imageId: string) => CalibratedPixelValue;
 };
 export default metadataProvider;

package/dist/cjs/utilities/calibratedPixelSpacingMetadataProvider.js

@@ -8,9 +8,6 @@ const state = {};
 const metadataProvider = {
     add: (imageId, payload) => {
         const imageURI = (0, imageIdToURI_1.default)(imageId);
-        if (!state[imageURI]) {
-            state[imageURI] = {};
-        }
         state[imageURI] = payload;
     },
     get: (type, imageId) => {

package/dist/cjs/utilities/calibratedPixelSpacingMetadataProvider.js.map

@@ -1 +1 @@
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+{"version":3,"file":"calibratedPixelSpacingMetadataProvider.js","sourceRoot":"","sources":["../../../src/utilities/calibratedPixelSpacingMetadataProvider.ts"],"names":[],"mappings":";;;;;AAAA,kEAA0C;AAS1C,MAAM,KAAK,GAAyC,EAAE,CAAC;AAOvD,MAAM,gBAAgB,GAAG;IAMvB,GAAG,EAAE,CAAC,OAAe,EAAE,OAA6B,EAAQ,EAAE;QAC5D,MAAM,QAAQ,GAAG,IAAA,sBAAY,EAAC,OAAO,CAAC,CAAC;QACvC,KAAK,CAAC,QAAQ,CAAC,GAAG,OAAO,CAAC;IAC5B,CAAC;IAQD,GAAG,EAAE,CAAC,IAAY,EAAE,OAAe,EAAwB,EAAE;QAC3D,IAAI,IAAI,KAAK,wBAAwB,EAAE;YACrC,MAAM,QAAQ,GAAG,IAAA,sBAAY,EAAC,OAAO,CAAC,CAAC;YACvC,OAAO,KAAK,CAAC,QAAQ,CAAC,CAAC;SACxB;IACH,CAAC;CACF,CAAC;AAEF,kBAAe,gBAAgB,CAAC"}

package/dist/cjs/utilities/loadImageToCanvas.js

@@ -57,6 +57,7 @@ function loadImageToCanvas(canvas, imageId, requestType = enums_1.RequestType.Th
             targetBuffer: {
                 type: useNorm16Texture ? undefined : 'Float32Array',
             },
+            useRGBA: true,
             preScale: {
                 enabled: true,
             },

package/dist/cjs/utilities/loadImageToCanvas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"loadImageToCanvas.js","sourceRoot":"","sources":["../../../src/utilities/loadImageToCanvas.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAEA,wDAA2D;AAC3D,sDAAwC;AACxC,oCAAuC;AACvC,+FAAuE;AACvE,sEAA8C;AAC9C,kCAA2C;AAoB3C,SAAwB,iBAAiB,CACvC,MAAyB,EACzB,OAAe,EACf,WAAW,GAAG,mBAAW,CAAC,SAAS,EACnC,QAAQ,GAAG,CAAC,CAAC;IAEb,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QACrC,SAAS,eAAe,CAAC,KAAa,EAAE,OAAe;;YACrD,MAAM,EAAE,QAAQ,EAAE,GAAG,QAAQ,CAAC,GAAG,CAAC,qBAAqB,EAAE,OAAO,CAAC,IAAI,EAAE,CAAC;YAExE,KAAK,CAAC,WAAW,GAAG,KAAK,CAAC,WAAW,KAAI,MAAA,KAAK,CAAC,QAAQ,0CAAE,MAAM,CAAA,CAAC;YAChE,IAAA,wBAAc,EAAC,MAAM,EAAE,KAAK,EAAE,QAAQ,CAAC,CAAC;YACxC,OAAO,CAAC,OAAO,CAAC,CAAC;QACnB,CAAC;QAED,SAAS,aAAa,CAAC,KAAY,EAAE,OAAe;YAClD,OAAO,CAAC,KAAK,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;YAC9B,MAAM,CAAC,KAAK,CAAC,CAAC;QAChB,CAAC;QAED,SAAS,WAAW,CAAC,OAAO,EAAE,YAAY,EAAE,OAAO;YACjD,OAAO,IAAA,+BAAiB,EAAC,OAAO,EAAE,OAAO,CAAC,CAAC,IAAI,CAC7C,CAAC,KAAK,EAAE,EAAE;gBACR,eAAe,CAAC,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,OAAO,CAAC,CAAC;YAC7C,CAAC,EACD,CAAC,KAAK,EAAE,EAAE;gBACR,aAAa,CAAC,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,OAAO,CAAC,CAAC;YAC3C,CAAC,CACF,CAAC;QACJ,CAAC;QAED,MAAM,EAAE,gBAAgB,EAAE,GAAG,IAAA,uBAAgB,GAAE,CAAC,SAAS,CAAC;QAI1D,MAAM,OAAO,GAAG;YACd,YAAY,EAAE;gBACZ,IAAI,EAAE,gBAAgB,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,cAAc;aACpD;YACD,OAAO,EAAE,IAAI;YACb,QAAQ,EAAE;gBACR,OAAO,EAAE,IAAI;aACd;YACD,WAAW;SACZ,CAAC;QAEF,8BAAoB,CAAC,UAAU,CAC7B,WAAW,CAAC,IAAI,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,CAAC,EAC9C,WAAW,EACX,EAAE,OAAO,EAAE,EACX,QAAQ,CACT,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC;AArDD,oCAqDC"}

package/dist/esm/RenderingEngine/BaseVolumeViewport.js

@@ -98,7 +98,7 @@ class BaseVolumeViewport extends Viewport {
             throw new Error('Method not implemented.');
         };
         this.useCPURendering = getShouldUseCPURendering();
-        this.use16BitTexture = this._shouldUse16BitTexture();
+        this.use16BitTexture = this._shouldUseNativeDataType();
         if (this.useCPURendering) {
             throw new Error('VolumeViewports cannot be used whilst CPU Fallback Rendering is enabled.');
         }

package/dist/esm/RenderingEngine/BaseVolumeViewport.js.map

@@ -1 +1 @@
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package/dist/esm/RenderingEngine/StackViewport.d.ts

@@ -18,7 +18,7 @@ declare class StackViewport extends Viewport implements IStackViewport {
     private _calibrationEvent;
     private _cpuFallbackEnabledElement?;
     private useCPURendering;
-    private use16BitTexture;
+    private useNativeDataType;
     private cpuImagePixelData;
     private cpuRenderingInvalidated;
     private csImage;
@@ -26,9 +26,12 @@ declare class StackViewport extends Viewport implements IStackViewport {
     scaling: Scaling;
     private initialViewUp;
     constructor(props: ViewportInput);
-    static get useCustomRenderingPipeline(): boolean;
     setUseCPURendering(value: boolean): void;
+    static get useCustomRenderingPipeline(): boolean;
+    updateRenderingPipeline: () => void;
     private _configureRenderingPipeline;
+    private _resetCPUFallbackElement;
+    private _resetGPUViewport;
     getImageData: () => IImageData | CPUIImageData;
     setColormap: (colormap: CPUFallbackColormapData) => void;
     getCamera: () => ICamera;
@@ -86,6 +89,7 @@ declare class StackViewport extends Viewport implements IStackViewport {
     setStack(imageIds: Array<string>, currentImageIdIndex?: number): Promise<string>;
     private _checkVTKImageDataMatchesCornerstoneImage;
     private _updateVTKImageDataFromCornerstoneImage;
+    private _updatePixelData;
     private _loadAndDisplayImage;
     private _loadAndDisplayImageCPU;
     private _loadAndDisplayImageGPU;

package/dist/esm/RenderingEngine/StackViewport.js

@@ -23,11 +23,10 @@ import calculateTransform from './helpers/cpuFallback/rendering/calculateTransfo
 import resize from './helpers/cpuFallback/rendering/resize';
 import resetCamera from './helpers/cpuFallback/rendering/resetCamera';
 import { Transform } from './helpers/cpuFallback/rendering/transform';
-import { getShouldUseCPURendering } from '../init';
+import { getConfiguration, getShouldUseCPURendering } from '../init';
 import RequestType from '../enums/RequestType';
 import cache from '../cache';
 import correctShift from './helpers/cpuFallback/rendering/correctShift';
-import isRgbaSourceRgbDest from './helpers/isRgbaSourceRgbDest';
 import createLinearRGBTransferFunction from '../utilities/createLinearRGBTransferFunction';
 const EPSILON = 1;
 class StackViewport extends Viewport {
@@ -37,7 +36,10 @@ class StackViewport extends Viewport {
         this.invert = false;
         this.stackInvalidated = false;
         this._publishCalibratedEvent = false;
-        this.use16BitTexture = false;
+        this.useNativeDataType = false;
+        this.updateRenderingPipeline = () => {
+            this._configureRenderingPipeline();
+        };
         this.resize = () => {
             if (this.useCPURendering) {
                 this._resizeCPU();
@@ -64,6 +66,10 @@ class StackViewport extends Viewport {
             mapper.setInputData(imageData);
             const actor = vtkImageSlice.newInstance();
             actor.setMapper(mapper);
+            const { preferSizeOverAccuracy } = getConfiguration().rendering;
+            if (preferSizeOverAccuracy) {
+                mapper.setPreferSizeOverAccuracy(true);
+            }
             if (imageData.getPointData().getNumberOfComponents() > 1) {
                 actor.getProperty().setIndependentComponents(false);
             }
@@ -300,28 +306,11 @@ class StackViewport extends Viewport {
         this.scaling = {};
         this.modality = null;
         this.useCPURendering = getShouldUseCPURendering();
-        this.use16BitTexture = this._shouldUse16BitTexture();
+        this.useNativeDataType = this._shouldUseNativeDataType();
         this._configureRenderingPipeline();
-        if (this.useCPURendering) {
-            this._cpuFallbackEnabledElement = {
-                canvas: this.canvas,
-                renderingTools: {},
-                transform: new Transform(),
-                viewport: { rotation: 0 },
-            };
-        }
-        else {
-            const renderer = this.getRenderer();
-            const camera = vtkCamera.newInstance();
-            renderer.setActiveCamera(camera);
-            const viewPlaneNormal = [0, 0, -1];
-            this.initialViewUp = [0, -1, 0];
-            camera.setDirectionOfProjection(-viewPlaneNormal[0], -viewPlaneNormal[1], -viewPlaneNormal[2]);
-            camera.setViewUp(...this.initialViewUp);
-            camera.setParallelProjection(true);
-            camera.setThicknessFromFocalPoint(0.1);
-            camera.setFreezeFocalPoint(true);
-        }
+        this.useCPURendering
+            ? this._resetCPUFallbackElement()
+            : this._resetGPUViewport();
         this.imageIds = [];
         this.currentImageIdIndex = 0;
         this.targetImageIdIndex = 0;
@@ -329,17 +318,42 @@ class StackViewport extends Viewport {
         this.resetCamera();
         this.initializeElementDisabledHandler();
     }
-    static get useCustomRenderingPipeline() {
-        return getShouldUseCPURendering();
-    }
     setUseCPURendering(value) {
         this.useCPURendering = value;
         this._configureRenderingPipeline();
     }
+    static get useCustomRenderingPipeline() {
+        return getShouldUseCPURendering();
+    }
     _configureRenderingPipeline() {
+        this.useNativeDataType = this._shouldUseNativeDataType();
+        this.useCPURendering = getShouldUseCPURendering();
         for (const [funcName, functions] of Object.entries(this.renderingPipelineFunctions)) {
             this[funcName] = this.useCPURendering ? functions.cpu : functions.gpu;
         }
+        this.useCPURendering
+            ? this._resetCPUFallbackElement()
+            : this._resetGPUViewport();
+    }
+    _resetCPUFallbackElement() {
+        this._cpuFallbackEnabledElement = {
+            canvas: this.canvas,
+            renderingTools: {},
+            transform: new Transform(),
+            viewport: { rotation: 0 },
+        };
+    }
+    _resetGPUViewport() {
+        const renderer = this.getRenderer();
+        const camera = vtkCamera.newInstance();
+        renderer.setActiveCamera(camera);
+        const viewPlaneNormal = [0, 0, -1];
+        this.initialViewUp = [0, -1, 0];
+        camera.setDirectionOfProjection(-viewPlaneNormal[0], -viewPlaneNormal[1], -viewPlaneNormal[2]);
+        camera.setViewUp(...this.initialViewUp);
+        camera.setParallelProjection(true);
+        camera.setThicknessFromFocalPoint(0.1);
+        camera.setFreezeFocalPoint(true);
     }
     initializeElementDisabledHandler() {
         eventTarget.addEventListener(Events.ELEMENT_DISABLED, function elementDisabledHandler() {
@@ -444,7 +458,7 @@ class StackViewport extends Viewport {
         if (!calibratedPixelSpacing) {
             return imagePlaneModule;
         }
-        const [calibratedRowSpacing, calibratedColumnSpacing] = calibratedPixelSpacing;
+        const { rowPixelSpacing: calibratedRowSpacing, columnPixelSpacing: calibratedColumnSpacing, } = calibratedPixelSpacing;
         if (imagePlaneModule.rowPixelSpacing === calibratedRowSpacing &&
             imagePlaneModule.columnPixelSpacing === calibratedColumnSpacing) {
             return imagePlaneModule;
@@ -463,12 +477,14 @@ class StackViewport extends Viewport {
                 rowScale: calibratedRowSpacing / imagePlaneModule.rowPixelSpacing,
                 columnScale: calibratedColumnSpacing / imagePlaneModule.columnPixelSpacing,
             };
+            calibratedPixelSpacing.appliedSpacing = calibratedPixelSpacing;
             imagePlaneModule.rowPixelSpacing = calibratedRowSpacing;
             imagePlaneModule.columnPixelSpacing = calibratedColumnSpacing;
             return imagePlaneModule;
         }
         const { imageData } = imageDataMetadata;
         const [columnPixelSpacing, rowPixelSpacing] = imageData.getSpacing();
+        calibratedPixelSpacing.appliedSpacing = calibratedPixelSpacing;
         imagePlaneModule.rowPixelSpacing = calibratedRowSpacing;
         imagePlaneModule.columnPixelSpacing = calibratedColumnSpacing;
         if (rowPixelSpacing === calibratedRowSpacing &&
@@ -888,26 +904,7 @@ class StackViewport extends Viewport {
             viewUp: [viewUp[0], viewUp[1], viewUp[2]],
         };
     }
-    _createVTKImageData({ origin, direction, dimensions, spacing, bitsAllocated, numComps, numVoxels, TypedArray, }) {
-        let pixelArray;
-        switch (bitsAllocated) {
-            case 8:
-                pixelArray = new Uint8Array(numVoxels * numComps);
-                break;
-            case 16:
-                if (this.use16BitTexture) {
-                    pixelArray = new TypedArray(numVoxels * numComps);
-                }
-                else {
-                    pixelArray = new Float32Array(numVoxels * numComps);
-                }
-                break;
-            case 24:
-                pixelArray = new Uint8Array(numVoxels * 3 * numComps);
-                break;
-            default:
-                console.log('bit allocation not implemented');
-        }
+    _createVTKImageData({ origin, direction, dimensions, spacing, numComps, pixelArray, }) {
         const scalarArray = vtkDataArray.newInstance({
             name: 'Pixels',
             numberOfComponents: numComps,
@@ -966,7 +963,7 @@ class StackViewport extends Viewport {
             yVoxels === image.rows &&
             isEqual(imagePlaneModule.rowCosines, rowCosines) &&
             isEqual(imagePlaneModule.columnCosines, columnCosines) &&
-            (!this.use16BitTexture ||
+            (!this.useNativeDataType ||
                 dataType === image.getPixelData().constructor.name));
     }
     _updateVTKImageDataFromCornerstoneImage(image) {
@@ -976,22 +973,22 @@ class StackViewport extends Viewport {
             origin = [0, 0, 0];
         }
         this._imageData.setOrigin(origin);
+        this._updatePixelData(image);
+    }
+    _updatePixelData(image) {
         const pixelData = image.getPixelData();
         const scalars = this._imageData.getPointData().getScalars();
         const scalarData = scalars.getData();
-        if (image.rgba || isRgbaSourceRgbDest(pixelData, scalarData)) {
-            if (!image.rgba) {
-                console.warn('rgba not specified but data looks rgba ish', image);
-            }
-            const numPixels = pixelData.length / 4;
-            let rgbIndex = 0;
-            let index = 0;
-            for (let i = 0; i < numPixels; i++) {
-                scalarData[index++] = pixelData[rgbIndex++];
-                scalarData[index++] = pixelData[rgbIndex++];
-                scalarData[index++] = pixelData[rgbIndex++];
-                rgbIndex++;
+        if (image.color && image.rgba) {
+            const newPixelData = new Uint8Array(image.columns * image.rows * 3);
+            for (let i = 0; i < image.columns * image.rows; i++) {
+                newPixelData[i * 3] = pixelData[i * 4];
+                newPixelData[i * 3 + 1] = pixelData[i * 4 + 1];
+                newPixelData[i * 3 + 2] = pixelData[i * 4 + 2];
             }
+            image.rgba = false;
+            image.getPixelData = () => newPixelData;
+            scalarData.set(newPixelData);
         }
         else {
             scalarData.set(pixelData);
@@ -1010,6 +1007,36 @@ class StackViewport extends Viewport {
                 if (this.currentImageIdIndex !== imageIdIndex) {
                     return;
                 }
+                const pixelData = image.getPixelData();
+                if (pixelData instanceof Float32Array) {
+                    const floatMinMax = {
+                        min: image.maxPixelValue,
+                        max: image.minPixelValue,
+                    };
+                    const floatRange = Math.abs(floatMinMax.max - floatMinMax.min);
+                    const intRange = 65535;
+                    const slope = floatRange / intRange;
+                    const intercept = floatMinMax.min;
+                    const numPixels = pixelData.length;
+                    const intPixelData = new Uint16Array(numPixels);
+                    let min = 65535;
+                    let max = 0;
+                    for (let i = 0; i < numPixels; i++) {
+                        const rescaledPixel = Math.floor((pixelData[i] - intercept) / slope);
+                        intPixelData[i] = rescaledPixel;
+                        min = Math.min(min, rescaledPixel);
+                        max = Math.max(max, rescaledPixel);
+                    }
+                    image.minPixelValue = min;
+                    image.maxPixelValue = max;
+                    image.slope = slope;
+                    image.intercept = intercept;
+                    image.getPixelData = () => intPixelData;
+                    image.preScale = {
+                        ...image.preScale,
+                        scaled: false,
+                    };
+                }
                 image.isPreScaled = image.preScale?.scaled;
                 this.csImage = image;
                 const eventDetail = {
@@ -1022,6 +1049,8 @@ class StackViewport extends Viewport {
                 triggerEvent(this.element, Events.STACK_NEW_IMAGE, eventDetail);
                 const metadata = this._getImageDataMetadata(image);
                 const viewport = getDefaultViewport(this.canvas, image, this.modality, this._cpuFallbackEnabledElement.viewport.colormap);
+                const { windowCenter, windowWidth } = viewport.voi;
+                this.voiRange = windowLevelUtil.toLowHighRange(windowWidth, windowCenter);
                 this._cpuFallbackEnabledElement.image = image;
                 this._cpuFallbackEnabledElement.metadata = {
                     ...metadata,
@@ -1060,9 +1089,6 @@ class StackViewport extends Viewport {
             const requestType = RequestType.Interaction;
             const additionalDetails = { imageId };
             const options = {
-                targetBuffer: {
-                    type: this.use16BitTexture ? undefined : 'Float32Array',
-                },
                 preScale: {
                     enabled: true,
                 },
@@ -1120,7 +1146,7 @@ class StackViewport extends Viewport {
             const additionalDetails = { imageId };
             const options = {
                 targetBuffer: {
-                    type: this.use16BitTexture ? undefined : 'Float32Array',
+                    type: this.useNativeDataType ? undefined : 'Float32Array',
                 },
                 preScale: {
                     enabled: true,
@@ -1158,16 +1184,14 @@ class StackViewport extends Viewport {
             this._setPropertiesFromCache();
             return;
         }
-        const { origin, direction, dimensions, spacing, bitsAllocated, numComps, numVoxels, imagePixelModule, } = this._getImageDataMetadata(image);
+        const { origin, direction, dimensions, spacing, numComps, imagePixelModule, } = this._getImageDataMetadata(image);
         this._createVTKImageData({
             origin,
             direction,
             dimensions,
             spacing,
-            bitsAllocated,
             numComps,
-            numVoxels,
-            TypedArray: image.getPixelData().constructor,
+            pixelArray: image.getPixelData(),
         });
         this._updateVTKImageDataFromCornerstoneImage(image);
         const actor = this.createActorMapper(this._imageData);
@@ -1383,9 +1407,15 @@ class StackViewport extends Viewport {
     }
     _getImagePlaneModule(imageId) {
         const imagePlaneModule = metaData.get('imagePlaneModule', imageId);
+        const calibratedPixelSpacing = metaData.get('calibratedPixelSpacing', imageId);
         const newImagePlaneModule = {
             ...imagePlaneModule,
         };
+        if (calibratedPixelSpacing?.appliedSpacing) {
+            const { rowPixelSpacing, columnPixelSpacing } = calibratedPixelSpacing.appliedSpacing;
+            newImagePlaneModule.rowPixelSpacing = rowPixelSpacing;
+            newImagePlaneModule.columnPixelSpacing = columnPixelSpacing;
+        }
         if (!newImagePlaneModule.columnPixelSpacing) {
             newImagePlaneModule.columnPixelSpacing = 1;
             this.hasPixelSpacing = false;