@cornerstonejs/core 0.43.0 → 0.44.0

package/dist/cjs/RenderingEngine/BaseVolumeViewport.js

@@ -137,7 +137,7 @@ class BaseVolumeViewport extends Viewport_1.default {
             throw new Error('Method not implemented.');
         };
         this.useCPURendering = (0, init_1.getShouldUseCPURendering)();
-        this.use16BitTexture = this._shouldUse16BitTexture();
+        this.use16BitTexture = this._shouldUseNativeDataType();
         if (this.useCPURendering) {
             throw new Error('VolumeViewports cannot be used whilst CPU Fallback Rendering is enabled.');
         }

package/dist/cjs/RenderingEngine/BaseVolumeViewport.js.map

@@ -1 +1 @@
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package/dist/cjs/RenderingEngine/StackViewport.d.ts

@@ -18,7 +18,7 @@ declare class StackViewport extends Viewport implements IStackViewport {
     private _calibrationEvent;
     private _cpuFallbackEnabledElement?;
     private useCPURendering;
-    private use16BitTexture;
+    private useNativeDataType;
     private cpuImagePixelData;
     private cpuRenderingInvalidated;
     private csImage;
@@ -26,9 +26,12 @@ declare class StackViewport extends Viewport implements IStackViewport {
     scaling: Scaling;
     private initialViewUp;
     constructor(props: ViewportInput);
-    static get useCustomRenderingPipeline(): boolean;
     setUseCPURendering(value: boolean): void;
+    static get useCustomRenderingPipeline(): boolean;
+    updateRenderingPipeline: () => void;
     private _configureRenderingPipeline;
+    private _resetCPUFallbackElement;
+    private _resetGPUViewport;
     getImageData: () => IImageData | CPUIImageData;
     setColormap: (colormap: CPUFallbackColormapData) => void;
     getCamera: () => ICamera;
@@ -86,6 +89,7 @@ declare class StackViewport extends Viewport implements IStackViewport {
     setStack(imageIds: Array<string>, currentImageIdIndex?: number): Promise<string>;
     private _checkVTKImageDataMatchesCornerstoneImage;
     private _updateVTKImageDataFromCornerstoneImage;
+    private _updatePixelData;
     private _loadAndDisplayImage;
     private _loadAndDisplayImageCPU;
     private _loadAndDisplayImageGPU;

package/dist/cjs/RenderingEngine/StackViewport.js

@@ -64,7 +64,6 @@ const init_1 = require("../init");
 const RequestType_1 = __importDefault(require("../enums/RequestType"));
 const cache_1 = __importDefault(require("../cache"));
 const correctShift_1 = __importDefault(require("./helpers/cpuFallback/rendering/correctShift"));
-const isRgbaSourceRgbDest_1 = __importDefault(require("./helpers/isRgbaSourceRgbDest"));
 const createLinearRGBTransferFunction_1 = __importDefault(require("../utilities/createLinearRGBTransferFunction"));
 const EPSILON = 1;
 class StackViewport extends Viewport_1.default {
@@ -74,7 +73,10 @@ class StackViewport extends Viewport_1.default {
         this.invert = false;
         this.stackInvalidated = false;
         this._publishCalibratedEvent = false;
-        this.use16BitTexture = false;
+        this.useNativeDataType = false;
+        this.updateRenderingPipeline = () => {
+            this._configureRenderingPipeline();
+        };
         this.resize = () => {
             if (this.useCPURendering) {
                 this._resizeCPU();
@@ -101,6 +103,10 @@ class StackViewport extends Viewport_1.default {
             mapper.setInputData(imageData);
             const actor = ImageSlice_1.default.newInstance();
             actor.setMapper(mapper);
+            const { preferSizeOverAccuracy } = (0, init_1.getConfiguration)().rendering;
+            if (preferSizeOverAccuracy) {
+                mapper.setPreferSizeOverAccuracy(true);
+            }
             if (imageData.getPointData().getNumberOfComponents() > 1) {
                 actor.getProperty().setIndependentComponents(false);
             }
@@ -337,28 +343,11 @@ class StackViewport extends Viewport_1.default {
         this.scaling = {};
         this.modality = null;
         this.useCPURendering = (0, init_1.getShouldUseCPURendering)();
-        this.use16BitTexture = this._shouldUse16BitTexture();
+        this.useNativeDataType = this._shouldUseNativeDataType();
         this._configureRenderingPipeline();
-        if (this.useCPURendering) {
-            this._cpuFallbackEnabledElement = {
-                canvas: this.canvas,
-                renderingTools: {},
-                transform: new transform_1.Transform(),
-                viewport: { rotation: 0 },
-            };
-        }
-        else {
-            const renderer = this.getRenderer();
-            const camera = Camera_1.default.newInstance();
-            renderer.setActiveCamera(camera);
-            const viewPlaneNormal = [0, 0, -1];
-            this.initialViewUp = [0, -1, 0];
-            camera.setDirectionOfProjection(-viewPlaneNormal[0], -viewPlaneNormal[1], -viewPlaneNormal[2]);
-            camera.setViewUp(...this.initialViewUp);
-            camera.setParallelProjection(true);
-            camera.setThicknessFromFocalPoint(0.1);
-            camera.setFreezeFocalPoint(true);
-        }
+        this.useCPURendering
+            ? this._resetCPUFallbackElement()
+            : this._resetGPUViewport();
         this.imageIds = [];
         this.currentImageIdIndex = 0;
         this.targetImageIdIndex = 0;
@@ -366,17 +355,42 @@ class StackViewport extends Viewport_1.default {
         this.resetCamera();
         this.initializeElementDisabledHandler();
     }
-    static get useCustomRenderingPipeline() {
-        return (0, init_1.getShouldUseCPURendering)();
-    }
     setUseCPURendering(value) {
         this.useCPURendering = value;
         this._configureRenderingPipeline();
     }
+    static get useCustomRenderingPipeline() {
+        return (0, init_1.getShouldUseCPURendering)();
+    }
     _configureRenderingPipeline() {
+        this.useNativeDataType = this._shouldUseNativeDataType();
+        this.useCPURendering = (0, init_1.getShouldUseCPURendering)();
         for (const [funcName, functions] of Object.entries(this.renderingPipelineFunctions)) {
             this[funcName] = this.useCPURendering ? functions.cpu : functions.gpu;
         }
+        this.useCPURendering
+            ? this._resetCPUFallbackElement()
+            : this._resetGPUViewport();
+    }
+    _resetCPUFallbackElement() {
+        this._cpuFallbackEnabledElement = {
+            canvas: this.canvas,
+            renderingTools: {},
+            transform: new transform_1.Transform(),
+            viewport: { rotation: 0 },
+        };
+    }
+    _resetGPUViewport() {
+        const renderer = this.getRenderer();
+        const camera = Camera_1.default.newInstance();
+        renderer.setActiveCamera(camera);
+        const viewPlaneNormal = [0, 0, -1];
+        this.initialViewUp = [0, -1, 0];
+        camera.setDirectionOfProjection(-viewPlaneNormal[0], -viewPlaneNormal[1], -viewPlaneNormal[2]);
+        camera.setViewUp(...this.initialViewUp);
+        camera.setParallelProjection(true);
+        camera.setThicknessFromFocalPoint(0.1);
+        camera.setFreezeFocalPoint(true);
     }
     initializeElementDisabledHandler() {
         eventTarget_1.default.addEventListener(Events_1.default.ELEMENT_DISABLED, function elementDisabledHandler() {
@@ -477,7 +491,7 @@ class StackViewport extends Viewport_1.default {
         if (!calibratedPixelSpacing) {
             return imagePlaneModule;
         }
-        const [calibratedRowSpacing, calibratedColumnSpacing] = calibratedPixelSpacing;
+        const { rowPixelSpacing: calibratedRowSpacing, columnPixelSpacing: calibratedColumnSpacing, } = calibratedPixelSpacing;
         if (imagePlaneModule.rowPixelSpacing === calibratedRowSpacing &&
             imagePlaneModule.columnPixelSpacing === calibratedColumnSpacing) {
             return imagePlaneModule;
@@ -496,12 +510,14 @@ class StackViewport extends Viewport_1.default {
                 rowScale: calibratedRowSpacing / imagePlaneModule.rowPixelSpacing,
                 columnScale: calibratedColumnSpacing / imagePlaneModule.columnPixelSpacing,
             };
+            calibratedPixelSpacing.appliedSpacing = calibratedPixelSpacing;
             imagePlaneModule.rowPixelSpacing = calibratedRowSpacing;
             imagePlaneModule.columnPixelSpacing = calibratedColumnSpacing;
             return imagePlaneModule;
         }
         const { imageData } = imageDataMetadata;
         const [columnPixelSpacing, rowPixelSpacing] = imageData.getSpacing();
+        calibratedPixelSpacing.appliedSpacing = calibratedPixelSpacing;
         imagePlaneModule.rowPixelSpacing = calibratedRowSpacing;
         imagePlaneModule.columnPixelSpacing = calibratedColumnSpacing;
         if (rowPixelSpacing === calibratedRowSpacing &&
@@ -922,26 +938,7 @@ class StackViewport extends Viewport_1.default {
             viewUp: [viewUp[0], viewUp[1], viewUp[2]],
         };
     }
-    _createVTKImageData({ origin, direction, dimensions, spacing, bitsAllocated, numComps, numVoxels, TypedArray, }) {
-        let pixelArray;
-        switch (bitsAllocated) {
-            case 8:
-                pixelArray = new Uint8Array(numVoxels * numComps);
-                break;
-            case 16:
-                if (this.use16BitTexture) {
-                    pixelArray = new TypedArray(numVoxels * numComps);
-                }
-                else {
-                    pixelArray = new Float32Array(numVoxels * numComps);
-                }
-                break;
-            case 24:
-                pixelArray = new Uint8Array(numVoxels * 3 * numComps);
-                break;
-            default:
-                console.log('bit allocation not implemented');
-        }
+    _createVTKImageData({ origin, direction, dimensions, spacing, numComps, pixelArray, }) {
         const scalarArray = DataArray_1.default.newInstance({
             name: 'Pixels',
             numberOfComponents: numComps,
@@ -1002,7 +999,7 @@ class StackViewport extends Viewport_1.default {
             yVoxels === image.rows &&
             (0, utilities_1.isEqual)(imagePlaneModule.rowCosines, rowCosines) &&
             (0, utilities_1.isEqual)(imagePlaneModule.columnCosines, columnCosines) &&
-            (!this.use16BitTexture ||
+            (!this.useNativeDataType ||
                 dataType === image.getPixelData().constructor.name));
     }
     _updateVTKImageDataFromCornerstoneImage(image) {
@@ -1012,22 +1009,22 @@ class StackViewport extends Viewport_1.default {
             origin = [0, 0, 0];
         }
         this._imageData.setOrigin(origin);
+        this._updatePixelData(image);
+    }
+    _updatePixelData(image) {
         const pixelData = image.getPixelData();
         const scalars = this._imageData.getPointData().getScalars();
         const scalarData = scalars.getData();
-        if (image.rgba || (0, isRgbaSourceRgbDest_1.default)(pixelData, scalarData)) {
-            if (!image.rgba) {
-                console.warn('rgba not specified but data looks rgba ish', image);
-            }
-            const numPixels = pixelData.length / 4;
-            let rgbIndex = 0;
-            let index = 0;
-            for (let i = 0; i < numPixels; i++) {
-                scalarData[index++] = pixelData[rgbIndex++];
-                scalarData[index++] = pixelData[rgbIndex++];
-                scalarData[index++] = pixelData[rgbIndex++];
-                rgbIndex++;
+        if (image.color && image.rgba) {
+            const newPixelData = new Uint8Array(image.columns * image.rows * 3);
+            for (let i = 0; i < image.columns * image.rows; i++) {
+                newPixelData[i * 3] = pixelData[i * 4];
+                newPixelData[i * 3 + 1] = pixelData[i * 4 + 1];
+                newPixelData[i * 3 + 2] = pixelData[i * 4 + 2];
             }
+            image.rgba = false;
+            image.getPixelData = () => newPixelData;
+            scalarData.set(newPixelData);
         }
         else {
             scalarData.set(pixelData);
@@ -1049,6 +1046,33 @@ class StackViewport extends Viewport_1.default {
                 if (this.currentImageIdIndex !== imageIdIndex) {
                     return;
                 }
+                const pixelData = image.getPixelData();
+                if (pixelData instanceof Float32Array) {
+                    const floatMinMax = {
+                        min: image.maxPixelValue,
+                        max: image.minPixelValue,
+                    };
+                    const floatRange = Math.abs(floatMinMax.max - floatMinMax.min);
+                    const intRange = 65535;
+                    const slope = floatRange / intRange;
+                    const intercept = floatMinMax.min;
+                    const numPixels = pixelData.length;
+                    const intPixelData = new Uint16Array(numPixels);
+                    let min = 65535;
+                    let max = 0;
+                    for (let i = 0; i < numPixels; i++) {
+                        const rescaledPixel = Math.floor((pixelData[i] - intercept) / slope);
+                        intPixelData[i] = rescaledPixel;
+                        min = Math.min(min, rescaledPixel);
+                        max = Math.max(max, rescaledPixel);
+                    }
+                    image.minPixelValue = min;
+                    image.maxPixelValue = max;
+                    image.slope = slope;
+                    image.intercept = intercept;
+                    image.getPixelData = () => intPixelData;
+                    image.preScale = Object.assign(Object.assign({}, image.preScale), { scaled: false });
+                }
                 image.isPreScaled = (_a = image.preScale) === null || _a === void 0 ? void 0 : _a.scaled;
                 this.csImage = image;
                 const eventDetail = {
@@ -1061,6 +1085,8 @@ class StackViewport extends Viewport_1.default {
                 (0, utilities_1.triggerEvent)(this.element, Events_1.default.STACK_NEW_IMAGE, eventDetail);
                 const metadata = this._getImageDataMetadata(image);
                 const viewport = (0, getDefaultViewport_1.default)(this.canvas, image, this.modality, this._cpuFallbackEnabledElement.viewport.colormap);
+                const { windowCenter, windowWidth } = viewport.voi;
+                this.voiRange = utilities_1.windowLevel.toLowHighRange(windowWidth, windowCenter);
                 this._cpuFallbackEnabledElement.image = image;
                 this._cpuFallbackEnabledElement.metadata = Object.assign({}, metadata);
                 this.cpuImagePixelData = image.getPixelData();
@@ -1097,9 +1123,6 @@ class StackViewport extends Viewport_1.default {
             const requestType = RequestType_1.default.Interaction;
             const additionalDetails = { imageId };
             const options = {
-                targetBuffer: {
-                    type: this.use16BitTexture ? undefined : 'Float32Array',
-                },
                 preScale: {
                     enabled: true,
                 },
@@ -1158,7 +1181,7 @@ class StackViewport extends Viewport_1.default {
             const additionalDetails = { imageId };
             const options = {
                 targetBuffer: {
-                    type: this.use16BitTexture ? undefined : 'Float32Array',
+                    type: this.useNativeDataType ? undefined : 'Float32Array',
                 },
                 preScale: {
                     enabled: true,
@@ -1196,16 +1219,14 @@ class StackViewport extends Viewport_1.default {
             this._setPropertiesFromCache();
             return;
         }
-        const { origin, direction, dimensions, spacing, bitsAllocated, numComps, numVoxels, imagePixelModule, } = this._getImageDataMetadata(image);
+        const { origin, direction, dimensions, spacing, numComps, imagePixelModule, } = this._getImageDataMetadata(image);
         this._createVTKImageData({
             origin,
             direction,
             dimensions,
             spacing,
-            bitsAllocated,
             numComps,
-            numVoxels,
-            TypedArray: image.getPixelData().constructor,
+            pixelArray: image.getPixelData(),
         });
         this._updateVTKImageDataFromCornerstoneImage(image);
         const actor = this.createActorMapper(this._imageData);
@@ -1417,7 +1438,13 @@ class StackViewport extends Viewport_1.default {
     }
     _getImagePlaneModule(imageId) {
         const imagePlaneModule = metaData.get('imagePlaneModule', imageId);
+        const calibratedPixelSpacing = metaData.get('calibratedPixelSpacing', imageId);
         const newImagePlaneModule = Object.assign({}, imagePlaneModule);
+        if (calibratedPixelSpacing === null || calibratedPixelSpacing === void 0 ? void 0 : calibratedPixelSpacing.appliedSpacing) {
+            const { rowPixelSpacing, columnPixelSpacing } = calibratedPixelSpacing.appliedSpacing;
+            newImagePlaneModule.rowPixelSpacing = rowPixelSpacing;
+            newImagePlaneModule.columnPixelSpacing = columnPixelSpacing;
+        }
         if (!newImagePlaneModule.columnPixelSpacing) {
             newImagePlaneModule.columnPixelSpacing = 1;
             this.hasPixelSpacing = false;