@cornerstonejs/adapters 0.2.0 → 0.3.0

package/src/adapters/Cornerstone/Angle.js

@@ -1,92 +0,0 @@
-import { utilities } from "dcmjs";
-
-import MeasurementReport from "./MeasurementReport";
-import CORNERSTONE_4_TAG from "./cornerstone4Tag";
-
-const { CobbAngle: TID300CobbAngle } = utilities.TID300;
-
-const ANGLE = "Angle";
-
-class Angle {
-    /**
-     * Generate TID300 measurement data for a plane angle measurement - use a CobbAngle, but label it as Angle
-     */
-    static getMeasurementData(MeasurementGroup) {
-        const { defaultState, NUMGroup, SCOORDGroup } =
-            MeasurementReport.getSetupMeasurementData(MeasurementGroup);
-
-        const state = {
-            ...defaultState,
-            rAngle: NUMGroup.MeasuredValueSequence.NumericValue,
-            toolType: Angle.toolType,
-            handles: {
-                start: {},
-                middle: {},
-                end: {},
-                textBox: {
-                    hasMoved: false,
-                    movesIndependently: false,
-                    drawnIndependently: true,
-                    allowedOutsideImage: true,
-                    hasBoundingBox: true
-                }
-            }
-        };
-
-        [
-            state.handles.start.x,
-            state.handles.start.y,
-            state.handles.middle.x,
-            state.handles.middle.y,
-            state.handles.middle.x,
-            state.handles.middle.y,
-            state.handles.end.x,
-            state.handles.end.y
-        ] = SCOORDGroup.GraphicData;
-
-        return state;
-    }
-
-    static getTID300RepresentationArguments(tool) {
-        const { handles, finding, findingSites } = tool;
-        const point1 = handles.start;
-        const point2 = handles.middle;
-        const point3 = handles.middle;
-        const point4 = handles.end;
-        const rAngle = tool.rAngle;
-
-        const trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:Angle";
-
-        return {
-            point1,
-            point2,
-            point3,
-            point4,
-            rAngle,
-            trackingIdentifierTextValue,
-            finding,
-            findingSites: findingSites || []
-        };
-    }
-}
-
-Angle.toolType = ANGLE;
-Angle.utilityToolType = ANGLE;
-Angle.TID300Representation = TID300CobbAngle;
-Angle.isValidCornerstoneTrackingIdentifier = TrackingIdentifier => {
-    if (!TrackingIdentifier.includes(":")) {
-        return false;
-    }
-
-    const [cornerstone4Tag, toolType] = TrackingIdentifier.split(":");
-
-    if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
-        return false;
-    }
-
-    return toolType === ANGLE;
-};
-
-MeasurementReport.registerTool(Angle);
-
-export default Angle;

package/src/adapters/Cornerstone/ArrowAnnotate.js

@@ -1,106 +0,0 @@
-import { utilities } from "dcmjs";
-
-import MeasurementReport from "./MeasurementReport";
-import CORNERSTONE_4_TAG from "./cornerstone4Tag";
-
-const { Point: TID300Point } = utilities.TID300;
-
-const ARROW_ANNOTATE = "ArrowAnnotate";
-const CORNERSTONEFREETEXT = "CORNERSTONEFREETEXT";
-
-class ArrowAnnotate {
-    static getMeasurementData(MeasurementGroup) {
-        const { defaultState, SCOORDGroup, findingGroup } =
-            MeasurementReport.getSetupMeasurementData(MeasurementGroup);
-
-        const text = findingGroup.ConceptCodeSequence.CodeMeaning;
-
-        const { GraphicData } = SCOORDGroup;
-
-        const state = {
-            ...defaultState,
-            toolType: ArrowAnnotate.toolType,
-            active: false,
-            handles: {
-                start: {
-                    x: GraphicData[0],
-                    y: GraphicData[1],
-                    highlight: true,
-                    active: false
-                },
-                // Use a generic offset if the stored data doesn't have the endpoint, otherwise
-                // use the actual endpoint.
-                end: {
-                    x:
-                        GraphicData.length == 4
-                            ? GraphicData[2]
-                            : GraphicData[0] + 20,
-                    y:
-                        GraphicData.length == 4
-                            ? GraphicData[3]
-                            : GraphicData[1] + 20,
-                    highlight: true,
-                    active: false
-                },
-                textBox: {
-                    hasMoved: false,
-                    movesIndependently: false,
-                    drawnIndependently: true,
-                    allowedOutsideImage: true,
-                    hasBoundingBox: true
-                }
-            },
-            invalidated: true,
-            text,
-            visible: true
-        };
-
-        return state;
-    }
-
-    static getTID300RepresentationArguments(tool) {
-        const points = [tool.handles.start, tool.handles.end];
-
-        let { finding, findingSites } = tool;
-
-        const TID300RepresentationArguments = {
-            points,
-            trackingIdentifierTextValue: `cornerstoneTools@^4.0.0:ArrowAnnotate`,
-            findingSites: findingSites || []
-        };
-
-        // If freetext finding isn't present, add it from the tool text.
-        if (!finding || finding.CodeValue !== CORNERSTONEFREETEXT) {
-            finding = {
-                CodeValue: CORNERSTONEFREETEXT,
-                CodingSchemeDesignator: "CST4",
-                CodeMeaning: tool.text
-            };
-        }
-
-        TID300RepresentationArguments.finding = finding;
-
-        return TID300RepresentationArguments;
-    }
-}
-
-ArrowAnnotate.toolType = ARROW_ANNOTATE;
-ArrowAnnotate.utilityToolType = ARROW_ANNOTATE;
-ArrowAnnotate.TID300Representation = TID300Point;
-ArrowAnnotate.isValidCornerstoneTrackingIdentifier = TrackingIdentifier => {
-    if (!TrackingIdentifier.includes(":")) {
-        return false;
-    }
-
-    const [cornerstone4Tag, toolType] = TrackingIdentifier.split(":");
-
-    if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
-        return false;
-    }
-
-    return toolType === ARROW_ANNOTATE;
-};
-
-MeasurementReport.registerTool(ArrowAnnotate);
-
-export default ArrowAnnotate;

package/src/adapters/Cornerstone/Bidirectional.js

@@ -1,187 +0,0 @@
-import { utilities } from "dcmjs";
-import MeasurementReport from "./MeasurementReport";
-import CORNERSTONE_4_TAG from "./cornerstone4Tag";
-import { toArray } from "../helpers";
-
-const { Bidirectional: TID300Bidirectional } = utilities.TID300;
-
-const BIDIRECTIONAL = "Bidirectional";
-const LONG_AXIS = "Long Axis";
-const SHORT_AXIS = "Short Axis";
-const FINDING = "121071";
-const FINDING_SITE = "G-C0E3";
-
-class Bidirectional {
-    // TODO: this function is required for all Cornerstone Tool Adapters, since it is called by MeasurementReport.
-    static getMeasurementData(MeasurementGroup) {
-        const { ContentSequence } = MeasurementGroup;
-
-        const findingGroup = toArray(ContentSequence).find(
-            group => group.ConceptNameCodeSequence.CodeValue === FINDING
-        );
-
-        const findingSiteGroups = toArray(ContentSequence).filter(
-            group => group.ConceptNameCodeSequence.CodeValue === FINDING_SITE
-        );
-
-        const longAxisNUMGroup = toArray(ContentSequence).find(
-            group => group.ConceptNameCodeSequence.CodeMeaning === LONG_AXIS
-        );
-
-        const longAxisSCOORDGroup = toArray(
-            longAxisNUMGroup.ContentSequence
-        ).find(group => group.ValueType === "SCOORD");
-
-        const shortAxisNUMGroup = toArray(ContentSequence).find(
-            group => group.ConceptNameCodeSequence.CodeMeaning === SHORT_AXIS
-        );
-
-        const shortAxisSCOORDGroup = toArray(
-            shortAxisNUMGroup.ContentSequence
-        ).find(group => group.ValueType === "SCOORD");
-
-        const { ReferencedSOPSequence } = longAxisSCOORDGroup.ContentSequence;
-        const { ReferencedSOPInstanceUID, ReferencedFrameNumber } =
-            ReferencedSOPSequence;
-
-        // Long axis
-
-        const longestDiameter = String(
-            longAxisNUMGroup.MeasuredValueSequence.NumericValue
-        );
-
-        const shortestDiameter = String(
-            shortAxisNUMGroup.MeasuredValueSequence.NumericValue
-        );
-
-        const bottomRight = {
-            x: Math.max(
-                longAxisSCOORDGroup.GraphicData[0],
-                longAxisSCOORDGroup.GraphicData[2],
-                shortAxisSCOORDGroup.GraphicData[0],
-                shortAxisSCOORDGroup.GraphicData[2]
-            ),
-            y: Math.max(
-                longAxisSCOORDGroup.GraphicData[1],
-                longAxisSCOORDGroup.GraphicData[3],
-                shortAxisSCOORDGroup.GraphicData[1],
-                shortAxisSCOORDGroup.GraphicData[3]
-            )
-        };
-
-        const state = {
-            sopInstanceUid: ReferencedSOPInstanceUID,
-            frameIndex: ReferencedFrameNumber || 1,
-            toolType: Bidirectional.toolType,
-            active: false,
-            handles: {
-                start: {
-                    x: longAxisSCOORDGroup.GraphicData[0],
-                    y: longAxisSCOORDGroup.GraphicData[1],
-                    drawnIndependently: false,
-                    allowedOutsideImage: false,
-                    active: false,
-                    highlight: false,
-                    index: 0
-                },
-                end: {
-                    x: longAxisSCOORDGroup.GraphicData[2],
-                    y: longAxisSCOORDGroup.GraphicData[3],
-                    drawnIndependently: false,
-                    allowedOutsideImage: false,
-                    active: false,
-                    highlight: false,
-                    index: 1
-                },
-                perpendicularStart: {
-                    x: shortAxisSCOORDGroup.GraphicData[0],
-                    y: shortAxisSCOORDGroup.GraphicData[1],
-                    drawnIndependently: false,
-                    allowedOutsideImage: false,
-                    active: false,
-                    highlight: false,
-                    index: 2
-                },
-                perpendicularEnd: {
-                    x: shortAxisSCOORDGroup.GraphicData[2],
-                    y: shortAxisSCOORDGroup.GraphicData[3],
-                    drawnIndependently: false,
-                    allowedOutsideImage: false,
-                    active: false,
-                    highlight: false,
-                    index: 3
-                },
-                textBox: {
-                    highlight: false,
-                    hasMoved: true,
-                    active: false,
-                    movesIndependently: false,
-                    drawnIndependently: true,
-                    allowedOutsideImage: true,
-                    hasBoundingBox: true,
-                    x: bottomRight.x + 10,
-                    y: bottomRight.y + 10
-                }
-            },
-            invalidated: false,
-            isCreating: false,
-            longestDiameter,
-            shortestDiameter,
-            toolName: "Bidirectional",
-            visible: true,
-            finding: findingGroup
-                ? findingGroup.ConceptCodeSequence
-                : undefined,
-            findingSites: findingSiteGroups.map(fsg => fsg.ConceptCodeSequence)
-        };
-
-        return state;
-    }
-
-    static getTID300RepresentationArguments(tool) {
-        const { start, end, perpendicularStart, perpendicularEnd } =
-            tool.handles;
-        const { shortestDiameter, longestDiameter, finding, findingSites } =
-            tool;
-
-        const trackingIdentifierTextValue =
-            "cornerstoneTools@^4.0.0:Bidirectional";
-
-        return {
-            longAxis: {
-                point1: start,
-                point2: end
-            },
-            shortAxis: {
-                point1: perpendicularStart,
-                point2: perpendicularEnd
-            },
-            longAxisLength: longestDiameter,
-            shortAxisLength: shortestDiameter,
-            trackingIdentifierTextValue,
-            finding: finding,
-            findingSites: findingSites || []
-        };
-    }
-}
-
-Bidirectional.toolType = BIDIRECTIONAL;
-Bidirectional.utilityToolType = BIDIRECTIONAL;
-Bidirectional.TID300Representation = TID300Bidirectional;
-Bidirectional.isValidCornerstoneTrackingIdentifier = TrackingIdentifier => {
-    if (!TrackingIdentifier.includes(":")) {
-        return false;
-    }
-
-    const [cornerstone4Tag, toolType] = TrackingIdentifier.split(":");
-
-    if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
-        return false;
-    }
-
-    return toolType === BIDIRECTIONAL;
-};
-
-MeasurementReport.registerTool(Bidirectional);
-
-export default Bidirectional;

package/src/adapters/Cornerstone/CircleRoi.js

@@ -1,109 +0,0 @@
-import { utilities } from "dcmjs";
-import MeasurementReport from "./MeasurementReport";
-import CORNERSTONE_4_TAG from "./cornerstone4Tag";
-
-const { Circle: TID300Circle } = utilities.TID300;
-
-const CIRCLEROI = "CircleRoi";
-
-class CircleRoi {
-    /** Gets the measurement data for cornerstone, given DICOM SR measurement data. */
-    static getMeasurementData(MeasurementGroup) {
-        const { defaultState, NUMGroup, SCOORDGroup } =
-            MeasurementReport.getSetupMeasurementData(MeasurementGroup);
-
-        const { GraphicData } = SCOORDGroup;
-
-        const center = { x: GraphicData[0], y: GraphicData[1] };
-        const end = { x: GraphicData[2], y: GraphicData[3] };
-
-        const state = {
-            ...defaultState,
-            toolType: CircleRoi.toolType,
-            active: false,
-            cachedStats: {
-                area: NUMGroup
-                    ? NUMGroup.MeasuredValueSequence.NumericValue
-                    : 0,
-                // Dummy values to be updated by cornerstone
-                radius: 0,
-                perimeter: 0
-            },
-            handles: {
-                end: {
-                    ...end,
-                    highlight: false,
-                    active: false
-                },
-                initialRotation: 0,
-                start: {
-                    ...center,
-                    highlight: false,
-                    active: false
-                },
-                textBox: {
-                    hasMoved: false,
-                    movesIndependently: false,
-                    drawnIndependently: true,
-                    allowedOutsideImage: true,
-                    hasBoundingBox: true
-                }
-            },
-            invalidated: true,
-            visible: true
-        };
-
-        return state;
-    }
-
-    /**
-     * Gets the TID 300 representation of a circle, given the cornerstone representation.
-     *
-     * @param {Object} tool
-     * @returns
-     */
-    static getTID300RepresentationArguments(tool) {
-        const { cachedStats = {}, handles, finding, findingSites } = tool;
-        const { start: center, end } = handles;
-        const { area, radius } = cachedStats;
-
-        const perimeter = 2 * Math.PI * radius;
-        const points = [];
-
-        points.push(center);
-        points.push(end);
-
-        const trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:CircleRoi";
-
-        return {
-            area,
-            perimeter,
-            radius,
-            points,
-            trackingIdentifierTextValue,
-            finding,
-            findingSites: findingSites || []
-        };
-    }
-}
-
-CircleRoi.toolType = CIRCLEROI;
-CircleRoi.utilityToolType = CIRCLEROI;
-CircleRoi.TID300Representation = TID300Circle;
-CircleRoi.isValidCornerstoneTrackingIdentifier = TrackingIdentifier => {
-    if (!TrackingIdentifier.includes(":")) {
-        return false;
-    }
-
-    const [cornerstone4Tag, toolType] = TrackingIdentifier.split(":");
-
-    if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
-        return false;
-    }
-
-    return toolType === CIRCLEROI;
-};
-
-MeasurementReport.registerTool(CircleRoi);
-
-export default CircleRoi;

package/src/adapters/Cornerstone/CobbAngle.js

@@ -1,96 +0,0 @@
-import { utilities } from "dcmjs";
-import MeasurementReport from "./MeasurementReport";
-import CORNERSTONE_4_TAG from "./cornerstone4Tag";
-
-const { CobbAngle: TID300CobbAngle } = utilities.TID300;
-
-const COBB_ANGLE = "CobbAngle";
-
-class CobbAngle {
-    // TODO: this function is required for all Cornerstone Tool Adapters, since it is called by MeasurementReport.
-    static getMeasurementData(MeasurementGroup) {
-        const { defaultState, NUMGroup, SCOORDGroup } =
-            MeasurementReport.getSetupMeasurementData(MeasurementGroup);
-
-        const state = {
-            ...defaultState,
-            rAngle: NUMGroup.MeasuredValueSequence.NumericValue,
-            toolType: CobbAngle.toolType,
-            handles: {
-                start: {},
-                end: {},
-                start2: {
-                    highlight: true,
-                    drawnIndependently: true
-                },
-                end2: {
-                    highlight: true,
-                    drawnIndependently: true
-                },
-                textBox: {
-                    hasMoved: false,
-                    movesIndependently: false,
-                    drawnIndependently: true,
-                    allowedOutsideImage: true,
-                    hasBoundingBox: true
-                }
-            }
-        };
-
-        [
-            state.handles.start.x,
-            state.handles.start.y,
-            state.handles.end.x,
-            state.handles.end.y,
-            state.handles.start2.x,
-            state.handles.start2.y,
-            state.handles.end2.x,
-            state.handles.end2.y
-        ] = SCOORDGroup.GraphicData;
-
-        return state;
-    }
-
-    static getTID300RepresentationArguments(tool) {
-        const { handles, finding, findingSites } = tool;
-        const point1 = handles.start;
-        const point2 = handles.end;
-        const point3 = handles.start2;
-        const point4 = handles.end2;
-        const rAngle = tool.rAngle;
-
-        const trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:CobbAngle";
-
-        return {
-            point1,
-            point2,
-            point3,
-            point4,
-            rAngle,
-            trackingIdentifierTextValue,
-            finding,
-            findingSites: findingSites || []
-        };
-    }
-}
-
-CobbAngle.toolType = COBB_ANGLE;
-CobbAngle.utilityToolType = COBB_ANGLE;
-CobbAngle.TID300Representation = TID300CobbAngle;
-CobbAngle.isValidCornerstoneTrackingIdentifier = TrackingIdentifier => {
-    if (!TrackingIdentifier.includes(":")) {
-        return false;
-    }
-
-    const [cornerstone4Tag, toolType] = TrackingIdentifier.split(":");
-
-    if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
-        return false;
-    }
-
-    return toolType === COBB_ANGLE;
-};
-
-MeasurementReport.registerTool(CobbAngle);
-
-export default CobbAngle;