@complat/react-spectra-editor 1.7.1 → 1.8.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (111) hide show
  1. package/CHANGELOG.md +28 -0
  2. package/LICENSE +21 -662
  3. package/README.md +5 -0
  4. package/dist/__tests__/fixtures/lc_ms_jcamp.js +2329 -0
  5. package/dist/__tests__/fixtures/lc_ms_jcamp_2.js +2874 -0
  6. package/dist/__tests__/fixtures/lc_ms_jcamp_mz_chemstation.js +3242 -0
  7. package/dist/__tests__/fixtures/lc_ms_jcamp_tic_chemstation.js +854 -0
  8. package/dist/__tests__/fixtures/lc_ms_jcamp_tic_neg.js +1233 -0
  9. package/dist/__tests__/fixtures/lc_ms_jcamp_tic_pos.js +1233 -0
  10. package/dist/__tests__/fixtures/lc_ms_jcamp_uvvis.js +48908 -0
  11. package/dist/__tests__/fixtures/lc_ms_jcamp_uvvis_chemstation.js +15424 -0
  12. package/dist/__tests__/units/components/cmd_bar/r05_submit_btn.test.js +158 -3
  13. package/dist/__tests__/units/components/d3_line_rect.test.js +85 -0
  14. package/dist/__tests__/units/components/d3_multi/multi_focus.test.js +43 -0
  15. package/dist/__tests__/units/components/hplc_viewer.test.js +123 -0
  16. package/dist/__tests__/units/components/panel/info.test.js +55 -15
  17. package/dist/__tests__/units/features/lc-ms/parsing/lcmsCategory.test.js +73 -0
  18. package/dist/__tests__/units/features/lc-ms/submit/peaks.test.js +310 -0
  19. package/dist/actions/curve.js +5 -2
  20. package/dist/actions/hplc_ms.js +66 -0
  21. package/dist/actions/integration.js +17 -2
  22. package/dist/actions/ui.js +39 -11
  23. package/dist/app.js +21 -8
  24. package/dist/components/cmd_bar/01_viewer.js +15 -11
  25. package/dist/components/cmd_bar/03_peak.js +25 -16
  26. package/dist/components/cmd_bar/04_integration.js +116 -17
  27. package/dist/components/cmd_bar/08_peak_group.js +83 -0
  28. package/dist/components/cmd_bar/collapsible_toolbar_group.js +101 -0
  29. package/dist/components/cmd_bar/common.js +4 -3
  30. package/dist/components/cmd_bar/index.js +76 -18
  31. package/dist/components/cmd_bar/r01_layout.js +6 -0
  32. package/dist/components/cmd_bar/r02_scan.js +15 -11
  33. package/dist/components/cmd_bar/r03_threshold.js +19 -3
  34. package/dist/components/cmd_bar/r04_submit.js +61 -6
  35. package/dist/components/cmd_bar/r05_submit_btn.js +60 -13
  36. package/dist/components/cmd_bar/r06_predict_btn.js +4 -4
  37. package/dist/components/cmd_bar/r07_wavelength_btn.js +10 -9
  38. package/dist/components/cmd_bar/r09_detector.js +2 -2
  39. package/dist/components/cmd_bar/tri_btn.js +4 -1
  40. package/dist/components/common/draw.js +6 -5
  41. package/dist/components/d3_line/index.js +70 -15
  42. package/dist/components/d3_line/line_focus.js +104 -67
  43. package/dist/components/d3_line_rect/index.js +836 -0
  44. package/dist/components/d3_line_rect/line_focus.js +526 -0
  45. package/dist/components/d3_line_rect/multi_focus.js +433 -0
  46. package/dist/components/d3_line_rect/rect_focus.js +247 -0
  47. package/dist/components/d3_multi/index.js +154 -163
  48. package/dist/components/d3_multi/multi_focus.js +117 -68
  49. package/dist/components/d3_rect/index.js +6 -0
  50. package/dist/components/d3_rect/rect_focus.js +17 -5
  51. package/dist/components/hplc_viewer.js +169 -0
  52. package/dist/components/lc_ms_uv_tools_bar.js +175 -0
  53. package/dist/components/multi_jcamps_viewer.js +17 -5
  54. package/dist/components/panel/compare.js +84 -62
  55. package/dist/components/panel/cyclic_voltamery_data.js +15 -14
  56. package/dist/components/panel/graph_selection.js +32 -30
  57. package/dist/components/panel/index.js +28 -22
  58. package/dist/components/panel/info.js +75 -26
  59. package/dist/constants/action_type.js +23 -2
  60. package/dist/constants/list_graph.js +16 -0
  61. package/dist/constants/list_layout.js +2 -1
  62. package/dist/constants/list_ui.js +5 -2
  63. package/dist/features/lc-ms/entities/extractEntityLCMS.js +187 -0
  64. package/dist/features/lc-ms/parsing/chemstation.js +108 -0
  65. package/dist/features/lc-ms/parsing/index.js +46 -0
  66. package/dist/features/lc-ms/parsing/lcmsCategory.js +44 -0
  67. package/dist/features/lc-ms/parsing/lcmsJcampInfo.js +18 -0
  68. package/dist/features/lc-ms/parsing/lcmsMsPage.js +241 -0
  69. package/dist/features/lc-ms/parsing/pageValue.js +27 -0
  70. package/dist/features/lc-ms/submit/index.js +24 -0
  71. package/dist/features/lc-ms/submit/peaks.js +66 -0
  72. package/dist/features/lc-ms/ui/wavelengthSelect.js +54 -0
  73. package/dist/fn.js +4 -1
  74. package/dist/helpers/brush.js +74 -19
  75. package/dist/helpers/calc.js +4 -2
  76. package/dist/helpers/cfg.js +5 -4
  77. package/dist/helpers/chem.js +449 -71
  78. package/dist/helpers/compass.js +181 -17
  79. package/dist/helpers/extractEntityLCMS.js +24 -0
  80. package/dist/helpers/extractParams.js +118 -33
  81. package/dist/helpers/extractPeaksEdit.js +29 -9
  82. package/dist/helpers/format.js +189 -4
  83. package/dist/helpers/init.js +25 -5
  84. package/dist/helpers/integration.js +130 -17
  85. package/dist/helpers/integration_draft.js +43 -0
  86. package/dist/helpers/integration_focus.js +155 -0
  87. package/dist/helpers/integration_jcamp.js +68 -0
  88. package/dist/helpers/integration_split.js +202 -0
  89. package/dist/helpers/mount.js +8 -1
  90. package/dist/helpers/sweep.js +39 -0
  91. package/dist/index.js +284 -26
  92. package/dist/layer_content.js +17 -3
  93. package/dist/layer_init.js +124 -14
  94. package/dist/layer_prism.js +31 -5
  95. package/dist/reducers/index.js +3 -1
  96. package/dist/reducers/reducer_curve.js +54 -36
  97. package/dist/reducers/reducer_hplc_ms/hydrate.js +289 -0
  98. package/dist/reducers/reducer_hplc_ms/index.js +122 -0
  99. package/dist/reducers/reducer_hplc_ms/persistence.js +74 -0
  100. package/dist/reducers/reducer_hplc_ms/tic.js +70 -0
  101. package/dist/reducers/reducer_hplc_ms/utils.js +70 -0
  102. package/dist/reducers/reducer_hplc_ms/uvvis.js +377 -0
  103. package/dist/reducers/reducer_integration.js +265 -7
  104. package/dist/reducers/reducer_layout.js +1 -1
  105. package/dist/reducers/reducer_submit.js +2 -1
  106. package/dist/reducers/reducer_ui.js +149 -13
  107. package/dist/reducers/undo_redo_config.js +2 -2
  108. package/dist/sagas/saga_lcms_ui.js +85 -0
  109. package/dist/sagas/saga_ui.js +177 -74
  110. package/dist/setupTests.js +5 -5
  111. package/package.json +10 -7
package/package.json CHANGED
@@ -1,14 +1,14 @@
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  {
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  "name": "@complat/react-spectra-editor",
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- "version": "1.7.1",
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+ "version": "1.8.0",
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  "description": "An editor to View and Edit Chemical Spectra data (NMR, IR, MS, CV, UIVIS, XRD, GC, and DSC).",
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  "repository": {
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  "type": "git",
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  "url": "https://github.com/ComPlat/react-spectra-editor"
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  },
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- "license": "AGPL-3.0",
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+ "license": "MIT",
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  "dependencies": {
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- "@complat/react-svg-file-zoom-pan": "1.1.4",
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+ "@complat/react-svg-file-zoom-pan": "1.1.5",
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  "@emotion/react": "^11.11.1",
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  "@emotion/styled": "^11.11.0",
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  "@mdi/js": "^7.2.96",
@@ -16,6 +16,7 @@
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  "@mui/icons-material": "^5.14.9",
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  "@mui/material": "^5.14.9",
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  "@mui/styles": "^5.14.9",
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+ "@pmmmwh/react-refresh-webpack-plugin": "0.4.3",
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  "@popperjs/core": "^2.11.8",
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  "@types/jest": "^29.5.0",
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  "@types/node": "^18.15.11",
@@ -26,12 +27,13 @@
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  "classnames": "^2.3.2",
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  "d3": "^7.8.5",
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  "d3-tip": "^0.9.1",
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+ "html-webpack-plugin": "4.5.2",
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  "jcampconverter": "4.1.0",
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  "ml-savitzky-golay-generalized": "1.1.1",
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  "prop-types": "^15.8.1",
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  "react-dropzone": "^8.0.3",
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  "react-quill": "^2.0.0",
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- "react-redux": "^7.2.0",
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+ "react-redux": "7.2.9",
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  "redux": "^4.1.1",
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  "redux-saga": "^1.1.3",
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  "redux-undo": "^1.1.0",
@@ -40,15 +42,16 @@
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  "typescript": "^5.0.4"
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  },
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  "scripts": {
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- "start": "react-scripts start",
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- "build": "react-scripts build",
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+ "start": "react-scripts --max_old_space_size=12288 start",
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+ "build": "react-scripts --max_old_space_size=12288 build",
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  "compile": "rm -rf dist && NODE_ENV=production babel --ignore tests,stories ./src --out-dir ./dist",
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  "test": "react-scripts test --env=jsdom --verbose --testPathIgnorePatterns=./src/__tests__/fixtures/",
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  "test:coverage": "CI=true react-scripts test --env=jsdom --verbose --testPathIgnorePatterns=./src/__tests__/fixtures/ --coverage",
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  "eject": "react-scripts eject",
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  "storybook": "start-storybook -p 3001 -c .storybook",
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  "buildbook": "build-storybook -c .storybook -o .out",
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- "e2e": "cypress open"
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+ "e2e": "cypress open",
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+ "docs:diagrams": "bash docs/diagrams/generate.sh"
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  },
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  "peerDependencies": {
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  "react": "^17.0.2",