@complat/react-spectra-editor 1.7.1 → 1.8.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +28 -0
- package/LICENSE +21 -662
- package/README.md +5 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp.js +2329 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_2.js +2874 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_mz_chemstation.js +3242 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_tic_chemstation.js +854 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_tic_neg.js +1233 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_tic_pos.js +1233 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_uvvis.js +48908 -0
- package/dist/__tests__/fixtures/lc_ms_jcamp_uvvis_chemstation.js +15424 -0
- package/dist/__tests__/units/components/cmd_bar/r05_submit_btn.test.js +158 -3
- package/dist/__tests__/units/components/d3_line_rect.test.js +85 -0
- package/dist/__tests__/units/components/d3_multi/multi_focus.test.js +43 -0
- package/dist/__tests__/units/components/hplc_viewer.test.js +123 -0
- package/dist/__tests__/units/components/panel/info.test.js +55 -15
- package/dist/__tests__/units/features/lc-ms/parsing/lcmsCategory.test.js +73 -0
- package/dist/__tests__/units/features/lc-ms/submit/peaks.test.js +310 -0
- package/dist/actions/curve.js +5 -2
- package/dist/actions/hplc_ms.js +66 -0
- package/dist/actions/integration.js +17 -2
- package/dist/actions/ui.js +39 -11
- package/dist/app.js +21 -8
- package/dist/components/cmd_bar/01_viewer.js +15 -11
- package/dist/components/cmd_bar/03_peak.js +25 -16
- package/dist/components/cmd_bar/04_integration.js +116 -17
- package/dist/components/cmd_bar/08_peak_group.js +83 -0
- package/dist/components/cmd_bar/collapsible_toolbar_group.js +101 -0
- package/dist/components/cmd_bar/common.js +4 -3
- package/dist/components/cmd_bar/index.js +76 -18
- package/dist/components/cmd_bar/r01_layout.js +6 -0
- package/dist/components/cmd_bar/r02_scan.js +15 -11
- package/dist/components/cmd_bar/r03_threshold.js +19 -3
- package/dist/components/cmd_bar/r04_submit.js +61 -6
- package/dist/components/cmd_bar/r05_submit_btn.js +60 -13
- package/dist/components/cmd_bar/r06_predict_btn.js +4 -4
- package/dist/components/cmd_bar/r07_wavelength_btn.js +10 -9
- package/dist/components/cmd_bar/r09_detector.js +2 -2
- package/dist/components/cmd_bar/tri_btn.js +4 -1
- package/dist/components/common/draw.js +6 -5
- package/dist/components/d3_line/index.js +70 -15
- package/dist/components/d3_line/line_focus.js +104 -67
- package/dist/components/d3_line_rect/index.js +836 -0
- package/dist/components/d3_line_rect/line_focus.js +526 -0
- package/dist/components/d3_line_rect/multi_focus.js +433 -0
- package/dist/components/d3_line_rect/rect_focus.js +247 -0
- package/dist/components/d3_multi/index.js +154 -163
- package/dist/components/d3_multi/multi_focus.js +117 -68
- package/dist/components/d3_rect/index.js +6 -0
- package/dist/components/d3_rect/rect_focus.js +17 -5
- package/dist/components/hplc_viewer.js +169 -0
- package/dist/components/lc_ms_uv_tools_bar.js +175 -0
- package/dist/components/multi_jcamps_viewer.js +17 -5
- package/dist/components/panel/compare.js +84 -62
- package/dist/components/panel/cyclic_voltamery_data.js +15 -14
- package/dist/components/panel/graph_selection.js +32 -30
- package/dist/components/panel/index.js +28 -22
- package/dist/components/panel/info.js +75 -26
- package/dist/constants/action_type.js +23 -2
- package/dist/constants/list_graph.js +16 -0
- package/dist/constants/list_layout.js +2 -1
- package/dist/constants/list_ui.js +5 -2
- package/dist/features/lc-ms/entities/extractEntityLCMS.js +187 -0
- package/dist/features/lc-ms/parsing/chemstation.js +108 -0
- package/dist/features/lc-ms/parsing/index.js +46 -0
- package/dist/features/lc-ms/parsing/lcmsCategory.js +44 -0
- package/dist/features/lc-ms/parsing/lcmsJcampInfo.js +18 -0
- package/dist/features/lc-ms/parsing/lcmsMsPage.js +241 -0
- package/dist/features/lc-ms/parsing/pageValue.js +27 -0
- package/dist/features/lc-ms/submit/index.js +24 -0
- package/dist/features/lc-ms/submit/peaks.js +66 -0
- package/dist/features/lc-ms/ui/wavelengthSelect.js +54 -0
- package/dist/fn.js +4 -1
- package/dist/helpers/brush.js +74 -19
- package/dist/helpers/calc.js +4 -2
- package/dist/helpers/cfg.js +5 -4
- package/dist/helpers/chem.js +449 -71
- package/dist/helpers/compass.js +181 -17
- package/dist/helpers/extractEntityLCMS.js +24 -0
- package/dist/helpers/extractParams.js +118 -33
- package/dist/helpers/extractPeaksEdit.js +29 -9
- package/dist/helpers/format.js +189 -4
- package/dist/helpers/init.js +25 -5
- package/dist/helpers/integration.js +130 -17
- package/dist/helpers/integration_draft.js +43 -0
- package/dist/helpers/integration_focus.js +155 -0
- package/dist/helpers/integration_jcamp.js +68 -0
- package/dist/helpers/integration_split.js +202 -0
- package/dist/helpers/mount.js +8 -1
- package/dist/helpers/sweep.js +39 -0
- package/dist/index.js +284 -26
- package/dist/layer_content.js +17 -3
- package/dist/layer_init.js +124 -14
- package/dist/layer_prism.js +31 -5
- package/dist/reducers/index.js +3 -1
- package/dist/reducers/reducer_curve.js +54 -36
- package/dist/reducers/reducer_hplc_ms/hydrate.js +289 -0
- package/dist/reducers/reducer_hplc_ms/index.js +122 -0
- package/dist/reducers/reducer_hplc_ms/persistence.js +74 -0
- package/dist/reducers/reducer_hplc_ms/tic.js +70 -0
- package/dist/reducers/reducer_hplc_ms/utils.js +70 -0
- package/dist/reducers/reducer_hplc_ms/uvvis.js +377 -0
- package/dist/reducers/reducer_integration.js +265 -7
- package/dist/reducers/reducer_layout.js +1 -1
- package/dist/reducers/reducer_submit.js +2 -1
- package/dist/reducers/reducer_ui.js +149 -13
- package/dist/reducers/undo_redo_config.js +2 -2
- package/dist/sagas/saga_lcms_ui.js +85 -0
- package/dist/sagas/saga_ui.js +177 -74
- package/dist/setupTests.js +5 -5
- package/package.json +10 -7
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"use strict";
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var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports.pickTicIndex = exports.default = void 0;
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var _init = require("../../helpers/init");
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var _mount = require("../../helpers/mount");
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var _brush = _interopRequireDefault(require("../../helpers/brush"));
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var _compass = require("../../helpers/compass");
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var _list_layout = require("../../constants/list_layout");
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var _format = _interopRequireDefault(require("../../helpers/format"));
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var _list_graph = require("../../constants/list_graph");
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var _chem = require("../../helpers/chem");
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var _extractEntityLCMS = require("../../helpers/extractEntityLCMS");
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/* eslint-disable no-unused-vars, prefer-object-spread, no-mixed-operators,
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no-unneeded-ternary, arrow-body-style, max-len */
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const d3 = require('d3');
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const pickTicIndex = (ticEntities, curveIdx, polarity) => {
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if (!Array.isArray(ticEntities) || ticEntities.length === 0) return 0;
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if (polarity) {
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const idxByPolarity = ticEntities.findIndex(ent => (0, _extractEntityLCMS.getLcMsInfo)(ent).polarity === polarity);
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if (idxByPolarity >= 0) return idxByPolarity;
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}
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if (Number.isInteger(curveIdx) && curveIdx >= 0 && curveIdx < ticEntities.length) {
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return curveIdx;
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}
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return 0;
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};
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exports.pickTicIndex = pickTicIndex;
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class MultiFocus {
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constructor(props) {
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const {
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W,
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H,
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clickUiTargetAct,
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selectUiSweepAct,
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scrollUiWheelAct,
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ticEntities,
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graphIndex,
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uiSt
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} = props;
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this.graphIndex = graphIndex;
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this.uiSt = uiSt;
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this.ticEntities = ticEntities;
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this.jcampIdx = 0;
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this.isShowAllCurves = false;
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this.rootKlass = `.${_list_graph.LIST_ROOT_SVG_GRAPH.MULTI}`;
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this.brushClass = `.${_list_graph.LIST_BRUSH_SVG_GRAPH.MULTI}`;
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this.margin = {
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t: 5,
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b: 40,
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l: 60,
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r: 5
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};
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this.w = W - this.margin.l - this.margin.r;
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this.h = H - this.margin.t - this.margin.b;
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this.clickUiTargetAct = clickUiTargetAct;
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this.selectUiSweepAct = selectUiSweepAct;
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this.scrollUiWheelAct = scrollUiWheelAct;
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this.brush = d3.brush();
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this.brushX = d3.brushX();
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this.axis = null;
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this.path = null;
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this.grid = null;
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this.tags = null;
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this.data = [];
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this.otherLineData = [];
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this.pathColor = 'steelblue';
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this.tTrEndPts = null;
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this.root = null;
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this.svg = null;
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this.axisCall = (0, _init.InitAxisCall)(5);
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this.pathCall = null;
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this.tip = null;
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this.factor = 0.125;
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this.currentExtent = null;
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this.shouldUpdate = {};
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this.layout = _list_layout.LIST_LAYOUT.LC_MS;
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this.getShouldUpdate = this.getShouldUpdate.bind(this);
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this.resetShouldUpdate = this.resetShouldUpdate.bind(this);
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this.setTip = this.setTip.bind(this);
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this.setDataParams = this.setDataParams.bind(this);
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this.create = this.create.bind(this);
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this.update = this.update.bind(this);
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this.setConfig = this.setConfig.bind(this);
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this.drawLine = this.drawLine.bind(this);
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this.drawOtherLines = this.drawOtherLines.bind(this);
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this.drawGrid = this.drawGrid.bind(this);
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this.drawPageMarker = this.drawPageMarker.bind(this);
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this.onClickTarget = this.onClickTarget.bind(this);
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this.isFirefox = typeof InstallTrigger !== 'undefined';
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}
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colorForPolarity = polarity => {
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if (polarity === 'negative') return '#2980b9';
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if (polarity === 'neutral') return '#2980b9';
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return '#d35400';
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};
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getTicLegendEntries = (ticEntities, hplcMsSt) => {
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const available = hplcMsSt?.tic?.available;
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const selected = hplcMsSt?.tic?.polarity;
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const baseEntries = [{
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key: 'positive',
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label: 'PLUS'
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}, {
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key: 'negative',
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label: 'MINUS'
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}, {
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key: 'neutral',
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label: 'NEUTRAL'
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}];
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let entries = [];
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if (available && typeof available === 'object') {
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const filtered = baseEntries.filter(entry => available[entry.key]);
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if (filtered.length > 0) entries = filtered;
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}
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if (entries.length === 0 && Array.isArray(ticEntities)) {
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const found = new Set();
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ticEntities.forEach(entry => {
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const {
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polarity
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} = (0, _extractEntityLCMS.getLcMsInfo)(entry);
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if (polarity) found.add(polarity);
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});
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if (found.size > 0) {
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entries = baseEntries.filter(entry => found.has(entry.key));
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}
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}
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if (entries.length === 0) entries = baseEntries;
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return entries.map(entry => ({
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...entry,
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color: this.colorForPolarity(entry.key),
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selected: entry.key === selected
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}));
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};
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drawTicLegend = (ticEntities, hplcMsSt) => {
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if (!this.root) return;
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this.root.selectAll('.tic-legend').remove();
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const entries = this.getTicLegendEntries(ticEntities, hplcMsSt);
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if (entries.length <= 1) return;
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const lineLength = 14;
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const lineGap = 6;
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const legendX = this.w - 8 - lineLength;
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const legendY = 10;
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const rowHeight = 14;
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const legend = this.root.append('g').attr('class', 'tic-legend');
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entries.forEach((entry, idx) => {
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const row = legend.append('g').attr('transform', `translate(${legendX}, ${legendY + idx * rowHeight})`);
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const opacity = entry.selected ? 1 : 0.35;
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row.append('line').attr('x1', 0).attr('x2', lineLength).attr('y1', 0).attr('y2', 0).attr('stroke', entry.color).attr('stroke-width', entry.selected ? 2 : 1).attr('stroke-opacity', opacity).attr('stroke-linecap', 'round');
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row.append('text').attr('x', -lineGap).attr('y', 0).attr('dy', '0.32em').attr('text-anchor', 'end').attr('font-family', 'Helvetica').style('font-size', '11px').style('fill', entry.color).style('opacity', opacity).text(entry.label);
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});
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};
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getShouldUpdate() {
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const {
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prevYt,
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prevLySt,
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prevTePt,
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prevData
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} = this.shouldUpdate;
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const {
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xt,
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yt
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} = (0, _compass.TfRescale)(this);
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const sameXY = xt(1.1) === prevXt && prevYt === yt(1.1);
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const sameLySt = prevLySt === this.layout;
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const sameTePt = prevTePt === this.tTrEndPts.length;
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const sameData = prevData === this.data.length;
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this.shouldUpdate = Object.assign({}, this.shouldUpdate, {
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sameXY,
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sameLySt,
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// eslint-disable-line
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sameTePt,
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sameData // eslint-disable-line
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});
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}
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resetShouldUpdate() {
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const {
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xt,
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yt
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} = (0, _compass.TfRescale)(this);
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const prevXt = xt(1.1);
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const prevYt = yt(1.1);
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const prevTePt = this.tTrEndPts.length;
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const prevData = this.data.length;
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const prevLySt = this.layout;
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this.shouldUpdate = Object.assign({}, this.shouldUpdate, {
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prevXt,
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prevYt,
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prevLySt,
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// eslint-disable-line
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prevTePt,
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prevData // eslint-disable-line
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});
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}
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setTip() {
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this.tip = (0, _init.InitTip)();
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this.root.call(this.tip);
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}
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setDataParams(tTrEndPts, layout, jcampIdx = 0) {
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this.data = [];
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this.otherLineData = [];
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const ticEntities = Array.isArray(this.ticEntities) ? this.ticEntities : [];
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ticEntities.forEach((entry, idx) => {
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const {
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topic,
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feature
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} = entry;
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|
+
const {
|
|
213
|
+
polarity = 'neutral'
|
|
214
|
+
} = (0, _extractEntityLCMS.getLcMsInfo)(entry);
|
|
215
|
+
const fixedColor = this.colorForPolarity(polarity);
|
|
216
|
+
if (!feature || !topic) return;
|
|
217
|
+
const currData = (0, _chem.convertTopic)(topic, layout, feature, 0);
|
|
218
|
+
if (idx === jcampIdx) {
|
|
219
|
+
this.data = currData;
|
|
220
|
+
this.pathColor = fixedColor;
|
|
221
|
+
} else {
|
|
222
|
+
this.otherLineData.push({
|
|
223
|
+
data: currData,
|
|
224
|
+
polarity,
|
|
225
|
+
color: fixedColor,
|
|
226
|
+
idx
|
|
227
|
+
});
|
|
228
|
+
}
|
|
229
|
+
});
|
|
230
|
+
this.tTrEndPts = tTrEndPts;
|
|
231
|
+
if (layout) {
|
|
232
|
+
this.layout = layout;
|
|
233
|
+
}
|
|
234
|
+
this.jcampIdx = jcampIdx;
|
|
235
|
+
this.xOnlyBrush = this.layout === _list_layout.LIST_LAYOUT.LC_MS;
|
|
236
|
+
}
|
|
237
|
+
updatePathCall(xt, yt) {
|
|
238
|
+
this.pathCall = d3.line().x(d => xt(d.x)).y(d => yt(d.y));
|
|
239
|
+
}
|
|
240
|
+
setConfig(sweepExtentSt) {
|
|
241
|
+
// Domain Calculate
|
|
242
|
+
let {
|
|
243
|
+
xExtent,
|
|
244
|
+
yExtent
|
|
245
|
+
} = sweepExtentSt || {
|
|
246
|
+
xExtent: false,
|
|
247
|
+
yExtent: false
|
|
248
|
+
};
|
|
249
|
+
let allData = null;
|
|
250
|
+
if (!xExtent || !yExtent) {
|
|
251
|
+
allData = [...this.data];
|
|
252
|
+
if (this.otherLineData) {
|
|
253
|
+
this.otherLineData.forEach(lineData => {
|
|
254
|
+
allData = [...allData, ...lineData.data];
|
|
255
|
+
});
|
|
256
|
+
}
|
|
257
|
+
}
|
|
258
|
+
if (!xExtent) {
|
|
259
|
+
const xes = d3.extent(allData, d => d.x).sort((a, b) => a - b);
|
|
260
|
+
xExtent = {
|
|
261
|
+
xL: xes[0],
|
|
262
|
+
xU: xes[1]
|
|
263
|
+
};
|
|
264
|
+
}
|
|
265
|
+
if (!yExtent) {
|
|
266
|
+
const btm = d3.min(allData, d => d.y);
|
|
267
|
+
const top = d3.max(allData, d => d.y);
|
|
268
|
+
const height = top - btm;
|
|
269
|
+
yExtent = {
|
|
270
|
+
yL: btm - this.factor * height,
|
|
271
|
+
yU: top + this.factor * height
|
|
272
|
+
};
|
|
273
|
+
}
|
|
274
|
+
this.scales.x.domain([xExtent.xL, xExtent.xU]);
|
|
275
|
+
this.scales.y.domain([yExtent.yL, yExtent.yU]);
|
|
276
|
+
|
|
277
|
+
// rescale for zoom
|
|
278
|
+
const {
|
|
279
|
+
xt,
|
|
280
|
+
yt
|
|
281
|
+
} = (0, _compass.TfRescale)(this);
|
|
282
|
+
|
|
283
|
+
// Axis Call
|
|
284
|
+
this.axisCall.x.scale(xt);
|
|
285
|
+
this.axisCall.y.scale(yt);
|
|
286
|
+
this.currentExtent = {
|
|
287
|
+
xExtent,
|
|
288
|
+
yExtent
|
|
289
|
+
};
|
|
290
|
+
}
|
|
291
|
+
drawLine() {
|
|
292
|
+
if (!this.path) return;
|
|
293
|
+
const {
|
|
294
|
+
xt,
|
|
295
|
+
yt
|
|
296
|
+
} = (0, _compass.TfRescale)(this);
|
|
297
|
+
this.updatePathCall(xt, yt);
|
|
298
|
+
this.path.attr('d', this.pathCall(this.data));
|
|
299
|
+
this.path.style('stroke', this.pathColor);
|
|
300
|
+
if (this.layout === _list_layout.LIST_LAYOUT.AIF) {
|
|
301
|
+
this.path.attr('marker-mid', 'url(#arrow-left)');
|
|
302
|
+
}
|
|
303
|
+
}
|
|
304
|
+
drawOtherLines(layout) {
|
|
305
|
+
d3.selectAll('.line-clip-compare').remove();
|
|
306
|
+
if (!this.otherLineData) return null;
|
|
307
|
+
const {
|
|
308
|
+
xt,
|
|
309
|
+
yt
|
|
310
|
+
} = (0, _compass.TfRescale)(this);
|
|
311
|
+
this.updatePathCall(xt, yt);
|
|
312
|
+
this.otherLineData.forEach((entry, idx) => {
|
|
313
|
+
const {
|
|
314
|
+
data,
|
|
315
|
+
color: pathColor
|
|
316
|
+
} = entry;
|
|
317
|
+
const path = (0, _mount.MountComparePath)(this, pathColor, idx, 0.4);
|
|
318
|
+
path.attr('d', this.pathCall(data));
|
|
319
|
+
if (this.layout === _list_layout.LIST_LAYOUT.AIF && this.isShowAllCurves === true) {
|
|
320
|
+
path.attr('marker-mid', 'url(#arrow-left)');
|
|
321
|
+
}
|
|
322
|
+
});
|
|
323
|
+
return null;
|
|
324
|
+
}
|
|
325
|
+
drawGrid() {
|
|
326
|
+
const {
|
|
327
|
+
sameXY
|
|
328
|
+
} = this.shouldUpdate;
|
|
329
|
+
if (sameXY || !this.grid || !this.axisCall) return;
|
|
330
|
+
if (this.grid.x && this.axisCall.x) {
|
|
331
|
+
this.grid.x.call(this.axisCall.x.tickSize(-this.h, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
|
|
332
|
+
}
|
|
333
|
+
if (this.grid.y && this.axisCall.y) {
|
|
334
|
+
this.grid.y.call(this.axisCall.y.tickSize(-this.w, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
|
|
335
|
+
}
|
|
336
|
+
}
|
|
337
|
+
drawPageMarker(hplcMsSt) {
|
|
338
|
+
if (!this.root) return;
|
|
339
|
+
const currentPageValue = hplcMsSt?.tic?.currentPageValue;
|
|
340
|
+
const hasValue = Number.isFinite(currentPageValue);
|
|
341
|
+
const marker = this.root.selectAll('.tic-page-marker').data(hasValue ? [currentPageValue] : []);
|
|
342
|
+
marker.exit().remove();
|
|
343
|
+
if (!hasValue) return;
|
|
344
|
+
const {
|
|
345
|
+
xt
|
|
346
|
+
} = (0, _compass.TfRescale)(this);
|
|
347
|
+
marker.enter().append('line').attr('class', 'tic-page-marker').attr('stroke', 'red').attr('stroke-width', 1).attr('stroke-opacity', 0.8).merge(marker).attr('x1', xt(currentPageValue)).attr('x2', xt(currentPageValue)).attr('y1', 0).attr('y2', this.h);
|
|
348
|
+
}
|
|
349
|
+
onClickTarget(event, data) {
|
|
350
|
+
event.stopPropagation();
|
|
351
|
+
event.preventDefault();
|
|
352
|
+
const onPeak = true;
|
|
353
|
+
this.clickUiTargetAct(data, onPeak, false, this.jcampIdx, false, 'lcms_tic');
|
|
354
|
+
}
|
|
355
|
+
create({
|
|
356
|
+
ticEntities,
|
|
357
|
+
curveSt,
|
|
358
|
+
hplcMsSt,
|
|
359
|
+
tTrEndPts,
|
|
360
|
+
layoutSt,
|
|
361
|
+
sweepExtentSt,
|
|
362
|
+
isUiNoBrushSt
|
|
363
|
+
}) {
|
|
364
|
+
this.svg = d3.select(this.rootKlass).select(this.brushClass);
|
|
365
|
+
(0, _mount.MountMainFrame)(this, 'focus');
|
|
366
|
+
(0, _mount.MountClip)(this);
|
|
367
|
+
const {
|
|
368
|
+
curveIdx,
|
|
369
|
+
isShowAllCurve
|
|
370
|
+
} = curveSt;
|
|
371
|
+
const selectedPolarity = hplcMsSt?.tic?.polarity;
|
|
372
|
+
const jcampIdx = pickTicIndex(ticEntities, curveIdx, selectedPolarity);
|
|
373
|
+
this.isShowAllCurves = isShowAllCurve;
|
|
374
|
+
this.ticEntities = Array.isArray(ticEntities) ? ticEntities : [];
|
|
375
|
+
this.root = d3.select(this.rootKlass).selectAll('.focus-main');
|
|
376
|
+
this.scales = (0, _init.InitScale)(this, false);
|
|
377
|
+
this.setTip();
|
|
378
|
+
this.setDataParams(tTrEndPts, layoutSt, jcampIdx);
|
|
379
|
+
(0, _compass.MountCompass)(this);
|
|
380
|
+
this.axis = (0, _mount.MountAxis)(this);
|
|
381
|
+
this.path = (0, _mount.MountPath)(this, this.pathColor);
|
|
382
|
+
this.grid = (0, _mount.MountGrid)(this);
|
|
383
|
+
this.tags = (0, _mount.MountTags)(this);
|
|
384
|
+
(0, _mount.MountAxisLabelX)(this);
|
|
385
|
+
(0, _mount.MountAxisLabelY)(this);
|
|
386
|
+
if (this.data && this.data.length > 0) {
|
|
387
|
+
this.setConfig(sweepExtentSt);
|
|
388
|
+
this.drawLine();
|
|
389
|
+
this.drawGrid();
|
|
390
|
+
this.drawPageMarker(hplcMsSt);
|
|
391
|
+
this.drawOtherLines(layoutSt);
|
|
392
|
+
this.drawTicLegend(ticEntities, hplcMsSt);
|
|
393
|
+
}
|
|
394
|
+
(0, _brush.default)(this, false, isUiNoBrushSt, this.brushClass);
|
|
395
|
+
this.resetShouldUpdate();
|
|
396
|
+
}
|
|
397
|
+
update({
|
|
398
|
+
curveSt,
|
|
399
|
+
tTrEndPts,
|
|
400
|
+
layoutSt,
|
|
401
|
+
ticEntities,
|
|
402
|
+
hplcMsSt,
|
|
403
|
+
sweepExtentSt,
|
|
404
|
+
isUiNoBrushSt,
|
|
405
|
+
uiSt
|
|
406
|
+
}) {
|
|
407
|
+
this.svg = d3.select(this.rootKlass).select(this.brushClass);
|
|
408
|
+
this.root = d3.select(this.rootKlass).selectAll('.focus-main');
|
|
409
|
+
this.scales = (0, _init.InitScale)(this, false);
|
|
410
|
+
const {
|
|
411
|
+
curveIdx,
|
|
412
|
+
isShowAllCurve
|
|
413
|
+
} = curveSt;
|
|
414
|
+
const selectedPolarity = hplcMsSt?.tic?.polarity;
|
|
415
|
+
const jcampIdx = pickTicIndex(ticEntities, curveIdx, selectedPolarity);
|
|
416
|
+
this.isShowAllCurves = isShowAllCurve;
|
|
417
|
+
this.ticEntities = Array.isArray(ticEntities) ? ticEntities : [];
|
|
418
|
+
this.uiSt = uiSt;
|
|
419
|
+
this.setDataParams(tTrEndPts, layoutSt, jcampIdx);
|
|
420
|
+
if (this.data && this.data.length > 0) {
|
|
421
|
+
this.setConfig(sweepExtentSt);
|
|
422
|
+
this.getShouldUpdate();
|
|
423
|
+
this.drawLine();
|
|
424
|
+
this.drawGrid();
|
|
425
|
+
this.drawPageMarker(hplcMsSt);
|
|
426
|
+
this.drawOtherLines(layoutSt);
|
|
427
|
+
this.drawTicLegend(ticEntities, hplcMsSt);
|
|
428
|
+
}
|
|
429
|
+
(0, _brush.default)(this, false, isUiNoBrushSt, this.brushClass);
|
|
430
|
+
this.resetShouldUpdate();
|
|
431
|
+
}
|
|
432
|
+
}
|
|
433
|
+
var _default = exports.default = MultiFocus;
|
|
@@ -0,0 +1,247 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
|
|
4
|
+
Object.defineProperty(exports, "__esModule", {
|
|
5
|
+
value: true
|
|
6
|
+
});
|
|
7
|
+
exports.default = void 0;
|
|
8
|
+
var _init = require("../../helpers/init");
|
|
9
|
+
var _brush = _interopRequireDefault(require("../../helpers/brush"));
|
|
10
|
+
var _mount = require("../../helpers/mount");
|
|
11
|
+
var _compass = require("../../helpers/compass");
|
|
12
|
+
var _converter = require("../../helpers/converter");
|
|
13
|
+
var _list_layout = require("../../constants/list_layout");
|
|
14
|
+
var _list_graph = require("../../constants/list_graph");
|
|
15
|
+
const d3 = require('d3');
|
|
16
|
+
class RectFocus {
|
|
17
|
+
constructor(props) {
|
|
18
|
+
const {
|
|
19
|
+
W,
|
|
20
|
+
H,
|
|
21
|
+
clickUiTargetAct,
|
|
22
|
+
selectUiSweepAct,
|
|
23
|
+
scrollUiWheelAct,
|
|
24
|
+
graphIndex,
|
|
25
|
+
uiSt
|
|
26
|
+
} = props;
|
|
27
|
+
this.graphIndex = graphIndex;
|
|
28
|
+
this.uiSt = uiSt;
|
|
29
|
+
this.rootKlass = `.${_list_graph.LIST_ROOT_SVG_GRAPH.RECT}`;
|
|
30
|
+
this.brushClass = `.${_list_graph.LIST_BRUSH_SVG_GRAPH.RECT}`;
|
|
31
|
+
this.margin = {
|
|
32
|
+
t: 5,
|
|
33
|
+
b: 40,
|
|
34
|
+
l: 60,
|
|
35
|
+
r: 5
|
|
36
|
+
};
|
|
37
|
+
this.w = W - this.margin.l - this.margin.r;
|
|
38
|
+
this.h = H - this.margin.t - this.margin.b;
|
|
39
|
+
this.clickUiTargetAct = clickUiTargetAct;
|
|
40
|
+
this.selectUiSweepAct = selectUiSweepAct;
|
|
41
|
+
this.scrollUiWheelAct = scrollUiWheelAct;
|
|
42
|
+
this.brush = d3.brush();
|
|
43
|
+
this.brushX = d3.brushX();
|
|
44
|
+
this.axis = null;
|
|
45
|
+
this.thresLine = null;
|
|
46
|
+
this.grid = null;
|
|
47
|
+
this.ref = null;
|
|
48
|
+
this.ccPattern = null;
|
|
49
|
+
this.data = [];
|
|
50
|
+
this.dataPks = [];
|
|
51
|
+
this.tTrEndPts = null;
|
|
52
|
+
this.tSfPeaks = null;
|
|
53
|
+
this.root = null;
|
|
54
|
+
this.svg = null;
|
|
55
|
+
this.bars = null;
|
|
56
|
+
this.scales = (0, _init.InitScale)(this, false);
|
|
57
|
+
this.axisCall = (0, _init.InitAxisCall)(5);
|
|
58
|
+
this.pathCall = null;
|
|
59
|
+
this.tip = null;
|
|
60
|
+
this.factor = 0.125;
|
|
61
|
+
this.currentExtent = null;
|
|
62
|
+
this.layout = _list_layout.LIST_LAYOUT.MS;
|
|
63
|
+
this.setTip = this.setTip.bind(this);
|
|
64
|
+
this.setDataParams = this.setDataParams.bind(this);
|
|
65
|
+
this.create = this.create.bind(this);
|
|
66
|
+
this.update = this.update.bind(this);
|
|
67
|
+
this.setConfig = this.setConfig.bind(this);
|
|
68
|
+
this.drawBar = this.drawBar.bind(this);
|
|
69
|
+
this.drawThres = this.drawThres.bind(this);
|
|
70
|
+
this.drawGrid = this.drawGrid.bind(this);
|
|
71
|
+
this.mergedPeaks = this.mergedPeaks.bind(this);
|
|
72
|
+
this.isFirefox = typeof InstallTrigger !== 'undefined';
|
|
73
|
+
}
|
|
74
|
+
setTip() {
|
|
75
|
+
this.tip = (0, _init.InitTip)();
|
|
76
|
+
this.root.call(this.tip);
|
|
77
|
+
}
|
|
78
|
+
setDataParams(data, peaks, tTrEndPts, tSfPeaks, layout = null) {
|
|
79
|
+
this.data = [...data];
|
|
80
|
+
this.dataPks = [...peaks];
|
|
81
|
+
this.tTrEndPts = tTrEndPts;
|
|
82
|
+
this.tSfPeaks = tSfPeaks;
|
|
83
|
+
if (layout) {
|
|
84
|
+
this.layout = layout;
|
|
85
|
+
}
|
|
86
|
+
this.xOnlyBrush = this.layout === _list_layout.LIST_LAYOUT.LC_MS;
|
|
87
|
+
const xExtent = d3.extent(this.data, d => d.x);
|
|
88
|
+
this.scales.x.domain(xExtent);
|
|
89
|
+
}
|
|
90
|
+
updatePathCall(xt, yt) {
|
|
91
|
+
this.pathCall = d3.line().x(d => xt(d.x)).y(d => yt(d.y));
|
|
92
|
+
}
|
|
93
|
+
setConfig(sweepExtentSt) {
|
|
94
|
+
// Domain Calculate
|
|
95
|
+
let {
|
|
96
|
+
xExtent,
|
|
97
|
+
yExtent
|
|
98
|
+
} = sweepExtentSt || {
|
|
99
|
+
xExtent: false,
|
|
100
|
+
yExtent: false
|
|
101
|
+
};
|
|
102
|
+
if (!xExtent || !yExtent) {
|
|
103
|
+
const xes = d3.extent(this.data, d => d.x).sort((a, b) => a - b);
|
|
104
|
+
const padding = (xes[1] - xes[0]) * 0.005;
|
|
105
|
+
xExtent = {
|
|
106
|
+
xL: Math.max(0, xes[0] - padding),
|
|
107
|
+
xU: xes[1] + padding
|
|
108
|
+
};
|
|
109
|
+
const btm = 0; // MS baseline is always 0.
|
|
110
|
+
const top = d3.max(this.data, d => d.y);
|
|
111
|
+
const height = top - btm;
|
|
112
|
+
yExtent = {
|
|
113
|
+
yL: btm - this.factor * height,
|
|
114
|
+
yU: top + this.factor * height
|
|
115
|
+
};
|
|
116
|
+
}
|
|
117
|
+
this.scales.x.domain([xExtent.xL, xExtent.xU]);
|
|
118
|
+
this.scales.y.domain([yExtent.yL, yExtent.yU]);
|
|
119
|
+
|
|
120
|
+
// rescale for zoom
|
|
121
|
+
const {
|
|
122
|
+
xt,
|
|
123
|
+
yt
|
|
124
|
+
} = (0, _compass.TfRescale)(this);
|
|
125
|
+
|
|
126
|
+
// Axis Call
|
|
127
|
+
this.axisCall.x.scale(xt);
|
|
128
|
+
this.axisCall.y.scale(yt);
|
|
129
|
+
this.currentExtent = {
|
|
130
|
+
xExtent,
|
|
131
|
+
yExtent
|
|
132
|
+
};
|
|
133
|
+
}
|
|
134
|
+
posHeight(gnd, val) {
|
|
135
|
+
const h = gnd - val;
|
|
136
|
+
return h >= 0 ? h : 0;
|
|
137
|
+
}
|
|
138
|
+
barColor(y, yRef) {
|
|
139
|
+
return y >= yRef ? 'steelblue' : '#aaa';
|
|
140
|
+
}
|
|
141
|
+
drawBar() {
|
|
142
|
+
if (!this.bars) {
|
|
143
|
+
return;
|
|
144
|
+
}
|
|
145
|
+
const {
|
|
146
|
+
xt,
|
|
147
|
+
yt
|
|
148
|
+
} = (0, _compass.TfRescale)(this);
|
|
149
|
+
this.updatePathCall(xt, yt);
|
|
150
|
+
if (!this.tTrEndPts.length) return;
|
|
151
|
+
const yRef = this.tTrEndPts[0].y;
|
|
152
|
+
const bars = this.bars.selectAll('rect').data(this.data);
|
|
153
|
+
bars.exit().attr('class', 'exit').remove();
|
|
154
|
+
const gnd = yt(0);
|
|
155
|
+
bars.enter().append('rect').attr('class', 'enter-bar').attr('width', 1.5).merge(bars).attr('fill', d => this.barColor(d.y, yRef)).attr('height', d => this.posHeight(gnd, yt(d.y))).attr('id', d => `mpp${Math.round(1000 * d.x)}`).attr('transform', d => `translate(${xt(d.x)}, ${yt(d.y)})`).on('mouseover', (event, d) => {
|
|
156
|
+
d3.select(`#mpp${Math.round(1000 * d.x)}`).attr('stroke-opacity', '1.0');
|
|
157
|
+
d3.select(`#bpt${Math.round(1000 * d.x)}`).style('fill', 'blue');
|
|
158
|
+
const tipParams = {
|
|
159
|
+
d,
|
|
160
|
+
layout: this.layout
|
|
161
|
+
};
|
|
162
|
+
this.tip.show(tipParams, event.target);
|
|
163
|
+
}).on('mouseout', (event, d) => {
|
|
164
|
+
d3.select(`#mpp${Math.round(1000 * d.x)}`).attr('stroke-opacity', '1.0');
|
|
165
|
+
d3.select(`#bpt${Math.round(1000 * d.x)}`).style('fill', 'red');
|
|
166
|
+
const tipParams = {
|
|
167
|
+
d,
|
|
168
|
+
layout: this.layout
|
|
169
|
+
};
|
|
170
|
+
this.tip.hide(tipParams, event.target);
|
|
171
|
+
});
|
|
172
|
+
}
|
|
173
|
+
drawThres() {
|
|
174
|
+
if (this.thresLine && this.tTrEndPts.length > 0) {
|
|
175
|
+
this.thresLine.attr('d', this.pathCall(this.tTrEndPts));
|
|
176
|
+
this.thresLine.attr('visibility', 'visible');
|
|
177
|
+
} else if (this.thresLine) {
|
|
178
|
+
this.thresLine.attr('visibility', 'hidden');
|
|
179
|
+
}
|
|
180
|
+
}
|
|
181
|
+
drawGrid() {
|
|
182
|
+
if (!this.grid) return;
|
|
183
|
+
this.grid.x.call(this.axisCall.x.tickSize(-this.h, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
|
|
184
|
+
this.grid.y.call(this.axisCall.y.tickSize(-this.w, 0, 0)).selectAll('line').attr('stroke', '#ddd').attr('stroke-opacity', 0.6).attr('fill', 'none');
|
|
185
|
+
}
|
|
186
|
+
mergedPeaks(editPeakSt) {
|
|
187
|
+
if (!editPeakSt) return this.dataPks;
|
|
188
|
+
this.dataPks = (0, _converter.PksEdit)(this.dataPks, editPeakSt);
|
|
189
|
+
return this.dataPks;
|
|
190
|
+
}
|
|
191
|
+
create({
|
|
192
|
+
filterSeed,
|
|
193
|
+
filterPeak,
|
|
194
|
+
tTrEndPts,
|
|
195
|
+
tSfPeaks,
|
|
196
|
+
layoutSt,
|
|
197
|
+
sweepExtentSt,
|
|
198
|
+
isUiAddIntgSt,
|
|
199
|
+
isUiNoBrushSt
|
|
200
|
+
}) {
|
|
201
|
+
this.svg = d3.select(this.brushClass);
|
|
202
|
+
(0, _mount.MountMainFrame)(this, 'focus');
|
|
203
|
+
(0, _mount.MountClip)(this);
|
|
204
|
+
this.root = d3.select(this.rootKlass).selectAll('.focus-main');
|
|
205
|
+
this.setTip();
|
|
206
|
+
this.setDataParams(filterSeed, filterPeak, tTrEndPts, tSfPeaks, layoutSt);
|
|
207
|
+
(0, _compass.MountCompass)(this);
|
|
208
|
+
this.axis = (0, _mount.MountAxis)(this);
|
|
209
|
+
[this.thresLine] = (0, _mount.MountThresLine)(this, 'green');
|
|
210
|
+
this.grid = (0, _mount.MountGrid)(this);
|
|
211
|
+
this.ref = (0, _mount.MountRef)(this);
|
|
212
|
+
this.bars = (0, _mount.MountBars)(this);
|
|
213
|
+
(0, _mount.MountAxisLabelX)(this);
|
|
214
|
+
(0, _mount.MountAxisLabelY)(this);
|
|
215
|
+
(0, _mount.MountGraphLabel)(this);
|
|
216
|
+
if (this.data && this.data.length > 0) {
|
|
217
|
+
this.setConfig(sweepExtentSt);
|
|
218
|
+
this.drawBar();
|
|
219
|
+
this.drawThres();
|
|
220
|
+
this.drawGrid();
|
|
221
|
+
}
|
|
222
|
+
(0, _brush.default)(this, isUiAddIntgSt, isUiNoBrushSt, this.brushClass);
|
|
223
|
+
}
|
|
224
|
+
update({
|
|
225
|
+
filterSeed,
|
|
226
|
+
filterPeak,
|
|
227
|
+
tTrEndPts,
|
|
228
|
+
tSfPeaks,
|
|
229
|
+
layoutSt,
|
|
230
|
+
sweepExtentSt,
|
|
231
|
+
isUiAddIntgSt,
|
|
232
|
+
isUiNoBrushSt,
|
|
233
|
+
uiSt
|
|
234
|
+
}) {
|
|
235
|
+
this.root = d3.select(this.rootKlass).selectAll('.focus-main');
|
|
236
|
+
this.setDataParams(filterSeed, filterPeak, tTrEndPts, tSfPeaks, layoutSt);
|
|
237
|
+
this.uiSt = uiSt;
|
|
238
|
+
if (this.data && this.data.length > 0) {
|
|
239
|
+
this.setConfig(sweepExtentSt);
|
|
240
|
+
this.drawBar();
|
|
241
|
+
this.drawThres();
|
|
242
|
+
this.drawGrid();
|
|
243
|
+
}
|
|
244
|
+
(0, _brush.default)(this, isUiAddIntgSt, isUiNoBrushSt, this.brushClass);
|
|
245
|
+
}
|
|
246
|
+
}
|
|
247
|
+
var _default = exports.default = RectFocus;
|