@colbymchenry/codegraph-darwin-x64 0.9.9 → 1.0.0

package/lib/dist/index.js

@@ -53,6 +53,10 @@ const graph_1 = require("./graph");
 const context_1 = require("./context");
 const utils_1 = require("./utils");
 const sync_1 = require("./sync");
+const extraction_version_1 = require("./extraction/extraction-version");
+const directory_2 = require("./directory");
+const query_utils_1 = require("./search/query-utils");
+const version_1 = require("./mcp/version");
 // Re-export types for consumers
 __exportStar(require("./types"), exports);
 // Storage building blocks for embedded/SDK consumers that drive the graph
@@ -64,11 +68,11 @@ Object.defineProperty(exports, "getDatabasePath", { enumerable: true, get: funct
 Object.defineProperty(exports, "DatabaseConnection", { enumerable: true, get: function () { return db_2.DatabaseConnection; } });
 var queries_2 = require("./db/queries");
 Object.defineProperty(exports, "QueryBuilder", { enumerable: true, get: function () { return queries_2.QueryBuilder; } });
-var directory_2 = require("./directory");
-Object.defineProperty(exports, "getCodeGraphDir", { enumerable: true, get: function () { return directory_2.getCodeGraphDir; } });
-Object.defineProperty(exports, "isInitialized", { enumerable: true, get: function () { return directory_2.isInitialized; } });
-Object.defineProperty(exports, "findNearestCodeGraphRoot", { enumerable: true, get: function () { return directory_2.findNearestCodeGraphRoot; } });
-Object.defineProperty(exports, "CODEGRAPH_DIR", { enumerable: true, get: function () { return directory_2.CODEGRAPH_DIR; } });
+var directory_3 = require("./directory");
+Object.defineProperty(exports, "getCodeGraphDir", { enumerable: true, get: function () { return directory_3.getCodeGraphDir; } });
+Object.defineProperty(exports, "isInitialized", { enumerable: true, get: function () { return directory_3.isInitialized; } });
+Object.defineProperty(exports, "findNearestCodeGraphRoot", { enumerable: true, get: function () { return directory_3.findNearestCodeGraphRoot; } });
+Object.defineProperty(exports, "CODEGRAPH_DIR", { enumerable: true, get: function () { return directory_3.CODEGRAPH_DIR; } });
 var extraction_2 = require("./extraction");
 Object.defineProperty(exports, "detectLanguage", { enumerable: true, get: function () { return extraction_2.detectLanguage; } });
 Object.defineProperty(exports, "isLanguageSupported", { enumerable: true, get: function () { return extraction_2.isLanguageSupported; } });
@@ -125,7 +129,15 @@ class CodeGraph {
         this.db = db;
         this.queries = queries;
         this.projectRoot = projectRoot;
-        this.fileLock = new utils_1.FileLock(path.join(projectRoot, '.codegraph', 'codegraph.lock'));
+        // Down-weight the project name as a query term in search ranking — it names
+        // the whole repo, not a symbol, so it has no discriminative value (#720).
+        try {
+            this.queries.setProjectNameTokens((0, query_utils_1.deriveProjectNameTokens)(projectRoot));
+        }
+        catch {
+            // Best-effort: ranking still works without it.
+        }
+        this.fileLock = new utils_1.FileLock(path.join((0, directory_2.getCodeGraphDir)(projectRoot), 'codegraph.lock'));
         this.orchestrator = new extraction_1.ExtractionOrchestrator(projectRoot, queries);
         this.resolver = (0, resolution_1.createResolver)(projectRoot, queries);
         this.graphManager = new graph_1.GraphQueryManager(queries);
@@ -300,6 +312,14 @@ class CodeGraph {
                             total,
                         });
                     });
+                    // Second pass: chained calls whose method lives on a supertype the
+                    // receiver conforms to (protocol-extension / inherited / default-
+                    // interface). Needs the implements/extends edges the main pass just
+                    // built, so it runs after resolution (#750).
+                    this.resolver.resolveChainedCallsViaConformance();
+                    // Same lifecycle for `this.<member>` callback registrations whose
+                    // member is inherited from a supertype (#808).
+                    this.resolver.resolveDeferredThisMemberRefs();
                 }
                 // Refresh planner stats + checkpoint the WAL after bulk writes.
                 // Cheap and non-blocking; never load-bearing for correctness.
@@ -314,6 +334,18 @@ class CodeGraph {
                     result.nodesCreated = after.nodes - before.nodes;
                     result.edgesCreated = after.edges - before.edges;
                 }
+                // Stamp the index with the engine that built it, so `codegraph status`
+                // and `codegraph upgrade` can recommend a re-index when the running
+                // engine produces richer extraction than the one on disk. Only on a
+                // real full index — a sync touches a subset, so it must NOT advance the
+                // extraction stamp (the bulk would still be stale). See extraction-version.ts.
+                if (result.success && result.filesIndexed > 0) {
+                    try {
+                        this.queries.setMetadata('indexed_with_version', version_1.CodeGraphPackageVersion);
+                        this.queries.setMetadata('indexed_with_extraction_version', String(extraction_version_1.EXTRACTION_VERSION));
+                    }
+                    catch { /* metadata is advisory — never fail an index over it */ }
+                }
                 return result;
             }
             finally {
@@ -398,6 +430,13 @@ class CodeGraph {
                             });
                         });
                     }
+                    // Second pass: chained calls whose method lives on a supertype the
+                    // receiver conforms to (protocol-extension / inherited). Needs the
+                    // implements/extends edges built above (#750).
+                    this.resolver.resolveChainedCallsViaConformance();
+                    // Same lifecycle for `this.<member>` callback registrations whose
+                    // member is inherited from a supertype (#808).
+                    this.resolver.resolveDeferredThisMemberRefs();
                 }
                 // Refresh planner stats + checkpoint the WAL after bulk writes.
                 if (result.filesAdded > 0 || result.filesModified > 0 || result.filesRemoved > 0) {
@@ -477,8 +516,8 @@ class CodeGraph {
         return this.watcher?.getPendingFiles() ?? [];
     }
     /**
-     * Resolves once the file watcher has finished its initial chokidar scan.
-     * Useful for tests that need a deterministic boundary before asserting on
+     * Resolves once the file watcher has installed its watch set. Useful for
+     * tests that need a deterministic boundary before asserting on
      * `getPendingFiles()`. Resolves immediately when no watcher is active.
      */
     waitUntilWatcherReady(timeoutMs) {
@@ -490,6 +529,39 @@ class CodeGraph {
     getChangedFiles() {
         return this.orchestrator.getChangedFiles();
     }
+    /**
+     * Most recent index timestamp (ms since epoch) across all tracked files, or
+     * null when nothing is indexed yet. Lets library consumers check index
+     * freshness without shelling out to `codegraph status --json`. (#329)
+     */
+    getLastIndexedAt() {
+        return this.queries.getLastIndexedAt();
+    }
+    /**
+     * Which engine built the current index: the package version + extraction
+     * version stamped at the last full `indexAll`. Either field is null for an
+     * index built before stamping existed (treated as stale). See
+     * `extraction-version.ts` and `isIndexStale()`.
+     */
+    getIndexBuildInfo() {
+        const version = this.queries.getMetadata('indexed_with_version');
+        const ev = this.queries.getMetadata('indexed_with_extraction_version');
+        const parsed = ev != null ? parseInt(ev, 10) : NaN;
+        return { version, extractionVersion: Number.isFinite(parsed) ? parsed : null };
+    }
+    /**
+     * True when the on-disk index was built by an engine whose extraction is
+     * older than the one now running — i.e. a re-index would add data a migration
+     * can't backfill. False when there's no index yet (nothing to refresh) or the
+     * stamp is current. This is the signal behind `codegraph status`'s re-index
+     * hint and `codegraph upgrade`'s reminder.
+     */
+    isIndexStale() {
+        if (this.queries.getLastIndexedAt() == null)
+            return false;
+        const { extractionVersion } = this.getIndexBuildInfo();
+        return extractionVersion == null || extractionVersion < extraction_version_1.EXTRACTION_VERSION;
+    }
     /**
      * Extract nodes and edges from source code (without storing)
      */
@@ -595,6 +667,16 @@ class CodeGraph {
     searchNodes(query, options) {
         return this.queries.searchNodes(query, options);
     }
+    /**
+     * Normalized project-name tokens (go.mod / package.json / repo dir) used to
+     * down-weight the non-discriminative project name in search ranking (#720).
+     * Exposed so explore can exclude it from the PascalCase type-disambiguation
+     * bias, which would otherwise pull overloaded tokens toward whichever stack
+     * embeds the project name.
+     */
+    getProjectNameTokens() {
+        return this.queries.getProjectNameTokens();
+    }
     /**
      * Find the project's "primary route file" — the file with the densest
      * concentration of framework-emitted `route` nodes (≥3 routes, ≥30%

package/lib/dist/index.js.map

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package/lib/dist/installer/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/installer/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAWH,OAAO,KAAK,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,iBAAiB,CAAC;AAWvE,OAAO,EACL,cAAc,EACd,gBAAgB,EAChB,YAAY,EACZ,cAAc,GACf,MAAM,iBAAiB,CAAC;AACzB,YAAY,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC;AAsBvD,MAAM,WAAW,mBAAmB;IAClC,+DAA+D;IAC/D,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,2DAA2D;IAC3D,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;OAGG;IACH,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED;;;;GAIG;AACH,wBAAsB,YAAY,IAAI,OAAO,CAAC,IAAI,CAAC,CAElD;AAED,wBAAsB,uBAAuB,CAAC,IAAI,EAAE,mBAAmB,GAAG,OAAO,CAAC,IAAI,CAAC,CAoItF;AAED,MAAM,WAAW,qBAAqB;IACpC;;;;;OAKG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,gEAAgE;IAChE,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED,MAAM,MAAM,eAAe,GAAG,SAAS,GAAG,gBAAgB,GAAG,aAAa,CAAC;AAE3E;;;;;;GAMG;AACH,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,QAAQ,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,eAAe,CAAC;IACxB,wEAAwE;IACxE,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,2DAA2D;IAC3D,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAC9B,OAAO,EAAE,SAAS,WAAW,EAAE,EAC/B,QAAQ,EAAE,QAAQ,GACjB,eAAe,EAAE,CAwBnB;AAED;;;;;;;;;GASG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8E/E;AAoHD;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,KAAK,EAAE,cAAc,gBAAgB,CAAC,EACtC,WAAW,EAAE,MAAM,EACnB,IAAI,GAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAA;CAAO,GAC3B,OAAO,CAAC,IAAI,CAAC,CAwDf"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/installer/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAWH,OAAO,KAAK,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,iBAAiB,CAAC;AAavE,OAAO,EACL,cAAc,EACd,gBAAgB,EAChB,YAAY,EACZ,cAAc,GACf,MAAM,iBAAiB,CAAC;AACzB,YAAY,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC;AAsBvD,MAAM,WAAW,mBAAmB;IAClC,+DAA+D;IAC/D,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,2DAA2D;IAC3D,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;OAGG;IACH,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED;;;;GAIG;AACH,wBAAsB,YAAY,IAAI,OAAO,CAAC,IAAI,CAAC,CAElD;AAED,wBAAsB,uBAAuB,CAAC,IAAI,EAAE,mBAAmB,GAAG,OAAO,CAAC,IAAI,CAAC,CA+KtF;AAED,MAAM,WAAW,qBAAqB;IACpC;;;;;OAKG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,QAAQ,CAAC,EAAE,QAAQ,CAAC;IACpB,gEAAgE;IAChE,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED,MAAM,MAAM,eAAe,GAAG,SAAS,GAAG,gBAAgB,GAAG,aAAa,CAAC;AAE3E;;;;;;GAMG;AACH,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,QAAQ,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,eAAe,CAAC;IACxB,wEAAwE;IACxE,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,2DAA2D;IAC3D,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAC9B,OAAO,EAAE,SAAS,WAAW,EAAE,EAC/B,QAAQ,EAAE,QAAQ,GACjB,eAAe,EAAE,CAwBnB;AAED;;;;;;;;;GASG;AACH,wBAAsB,cAAc,CAAC,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAqF/E;AAsHD;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,KAAK,EAAE,cAAc,gBAAgB,CAAC,EACtC,WAAW,EAAE,MAAM,EACnB,IAAI,GAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAA;CAAO,GAC3B,OAAO,CAAC,IAAI,CAAC,CAwDf"}

package/lib/dist/installer/index.js

@@ -62,6 +62,8 @@ const glyphs_1 = require("../ui/glyphs");
 // installer must stay importable even when native modules can't load).
 const watch_policy_1 = require("../sync/watch-policy");
 const git_hooks_1 = require("../sync/git-hooks");
+const directory_1 = require("../directory");
+const telemetry_1 = require("../telemetry");
 // Backwards-compat: keep these named exports — downstream code may
 // import them. The shim in `config-writer.ts` continues to re-export
 // them too.
@@ -193,14 +195,43 @@ async function runInstallerWithOptions(opts) {
     else {
         autoAllow = false;
     }
+    // Step 4½: anonymous usage telemetry — a visible default-on toggle, asked
+    // exactly once. Skipped when an env var (DO_NOT_TRACK / CODEGRAPH_TELEMETRY)
+    // already decides, or when a previous run stored a choice — re-runs and
+    // upgrades never re-ask.
+    if (!useDefaults && (0, telemetry_1.getTelemetry)().getStatus().decidedBy === 'default' && !(0, telemetry_1.getTelemetry)().hasStoredChoice()) {
+        const share = await clack.confirm({
+            message: 'Share anonymous usage stats? (No code, paths, or names — see TELEMETRY.md)',
+            initialValue: true,
+        });
+        if (clack.isCancel(share)) {
+            // Don't kill the install over the telemetry question — leave it
+            // undecided (the documented default + first-run notice applies later).
+            clack.log.info('Skipped — manage anytime with `codegraph telemetry on|off`.');
+        }
+        else {
+            (0, telemetry_1.getTelemetry)().setEnabled(share, 'installer');
+            clack.log.info(share
+                ? `Thanks! Exactly what is collected: ${telemetry_1.TELEMETRY_DOCS}`
+                : 'Telemetry disabled — nothing will be collected or sent.');
+        }
+    }
     // Step 5: per-target install loop.
+    const installedIds = [];
+    let sawCreated = false;
+    let sawUpdated = false;
     for (const target of targets) {
         if (!target.supportsLocation(location)) {
             clack.log.warn(`${target.displayName}: skipped — does not support --location=${location}.`);
             continue;
         }
         const result = target.install(location, { autoAllow });
+        installedIds.push(target.id);
         for (const file of result.files) {
+            if (file.action === 'created')
+                sawCreated = true;
+            if (file.action === 'updated')
+                sawUpdated = true;
             const verb = file.action === 'unchanged'
                 ? 'Unchanged'
                 : file.action === 'created' ? 'Created'
@@ -212,6 +243,15 @@ async function runInstallerWithOptions(opts) {
             clack.log.info(`${target.displayName}: ${note}`);
         }
     }
+    // Telemetry: which agents were configured, where, fresh-vs-upgrade (derived
+    // from the file actions above). Target IDs and the location enum only.
+    if (installedIds.length > 0) {
+        (0, telemetry_1.getTelemetry)().recordLifecycle('install', {
+            targets: installedIds,
+            scope: location,
+            kind: sawCreated ? 'fresh' : sawUpdated ? 'upgrade' : 'reinstall',
+        });
+    }
     // Step 6: for local install, initialize the project.
     if (location === 'local') {
         await initializeLocalProject(clack, useDefaults);
@@ -219,6 +259,9 @@ async function runInstallerWithOptions(opts) {
     if (location === 'global') {
         clack.note('cd your-project\ncodegraph init -i', 'Quick start');
     }
+    // Deliver buffered telemetry while we're already in a long interactive
+    // command — bounded (~1.5s worst case), invisible after a multi-second install.
+    await (0, telemetry_1.getTelemetry)().flushNow();
     const finalNote = targets.length > 0
         ? `Done! Restart your agent${targets.length > 1 ? 's' : ''} to use CodeGraph.`
         : 'Done!';
@@ -330,8 +373,14 @@ async function runUninstaller(opts) {
     }
     // Step 4: for local uninstall, the index dir is separate — point at
     // `uninit` so the user knows it's still there (and how to remove it).
-    if (location === 'local' && fs.existsSync(path.join(process.cwd(), '.codegraph'))) {
-        clack.log.info('The .codegraph/ index for this project is still here. Run `codegraph uninit` to delete it.');
+    if (location === 'local' && fs.existsSync((0, directory_1.getCodeGraphDir)(process.cwd()))) {
+        clack.log.info(`The ${(0, directory_1.codeGraphDirName)()}/ index for this project is still here. Run \`codegraph uninit\` to delete it.`);
+    }
+    // Telemetry churn signal (agent IDs only) — flush now, since after an
+    // uninstall there is usually no "next run" to deliver it.
+    if (removed.length > 0) {
+        (0, telemetry_1.getTelemetry)().recordLifecycle('uninstall', { targets: removed.map((r) => r.id) });
+        await (0, telemetry_1.getTelemetry)().flushNow();
     }
     // Step 5: summary.
     if (removed.length > 0) {
@@ -432,6 +481,7 @@ async function initializeLocalProject(clack, useDefaults = false) {
     else {
         clack.log.success(`Indexed ${formatNumber(result.filesIndexed)} files (${formatNumber(result.nodesCreated)} symbols)`);
     }
+    (0, telemetry_1.recordIndexEvent)(cg, result); // buffered; the installer flushes at the end
     cg.close();
     await offerWatchFallback(clack, projectPath, { yes: useDefaults });
 }

package/lib/dist/installer/index.js.map

@@ -1 +1 @@
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package/lib/dist/installer/instructions-template.d.ts

@@ -1,18 +1,41 @@
 /**
- * Marker constants for the legacy agent-instructions block.
+ * The marker-fenced agent-instructions block the installer writes into each
+ * agent's instructions file (CLAUDE.md / AGENTS.md / GEMINI.md).
  *
- * Codegraph used to write a `## CodeGraph` usage guide into each
- * agent's instructions file (CLAUDE.md / AGENTS.md / GEMINI.md /
- * codegraph.mdc / Kiro steering doc). That duplicated the guidance the
- * MCP server already emits in its `initialize` response — every agent
- * read the same playbook twice each turn (issue #529). The installer no
- * longer writes an instructions file; the MCP server instructions in
- * `mcp/server-instructions.ts` are the single source of truth.
+ * History: pre-#529 the installer wrote a full usage playbook here, which
+ * duplicated the MCP `initialize` instructions for the main agent — so it
+ * was removed and `mcp/server-instructions.ts` became the single source of
+ * truth. A much smaller block returned for #704, because the MCP
+ * instructions cannot reach two audiences that the instructions FILE does
+ * reach:
  *
- * These markers are retained so install (self-heal on upgrade) and
- * uninstall can find and strip the block a previous install wrote.
+ *  - **Task-tool subagents** — they receive the project instructions file
+ *    in their context but NOT the MCP initialize instructions. They hold
+ *    the codegraph MCP tools only as deferred names and rarely think to
+ *    load them: measured on a forced-delegation flow question (excalidraw,
+ *    sonnet, high effort), subagents loaded + used codegraph in ~1 of 9
+ *    runs without this block, and consistently with it — including runs
+ *    with zero Read/grep fallback.
+ *  - **Non-MCP harnesses** — agents with no MCP client at all can still
+ *    run the `codegraph explore` / `codegraph node` CLI, which prints the
+ *    same output as the MCP tools.
+ *
+ * Keep this block SHORT. The main agent reads it every turn on top of the
+ * server instructions — the #529 duplication-cost argument still bounds
+ * its size. Command names and the two surfaces, nothing more.
  */
-/** Markers used by the marker-based section removal. */
+/** Markers used by the marker-based section write/removal. */
 export declare const CODEGRAPH_SECTION_START = "<!-- CODEGRAPH_START -->";
 export declare const CODEGRAPH_SECTION_END = "<!-- CODEGRAPH_END -->";
+/**
+ * The full block, markers included, exactly as written to disk.
+ *
+ * The wording is deliberately CONDITIONAL ("in repositories indexed by…"):
+ * a global install writes this into a user-scope file (~/.claude/CLAUDE.md,
+ * ~/.codex/AGENTS.md) that applies to every project the user opens —
+ * including unindexed ones, where an unconditional "this repository is
+ * indexed" claim would send subagents into failing codegraph calls (the
+ * noise the unindexed-session policy exists to prevent).
+ */
+export declare const CODEGRAPH_INSTRUCTIONS_BLOCK = "<!-- CODEGRAPH_START -->\n## CodeGraph\n\nIn repositories indexed by CodeGraph (a `.codegraph/` directory exists at the repo root), reach for it BEFORE grep/find or reading files when you need to understand or locate code:\n\n- **MCP tools** (when available): `codegraph_explore` answers most code questions in one call \u2014 the relevant symbols' verbatim source plus the call paths between them. `codegraph_node` returns one symbol's source + callers, or reads a whole file with line numbers. If the tools are listed but deferred, load them by name via tool search.\n- **Shell** (always works): `codegraph explore \"<symbol names or question>\"` and `codegraph node <symbol-or-file>` print the same output.\n\nIf there is no `.codegraph/` directory, skip CodeGraph entirely \u2014 indexing is the user's decision.\n<!-- CODEGRAPH_END -->";
 //# sourceMappingURL=instructions-template.d.ts.map

package/lib/dist/installer/instructions-template.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"instructions-template.d.ts","sourceRoot":"","sources":["../../src/installer/instructions-template.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,wDAAwD;AACxD,eAAO,MAAM,uBAAuB,6BAA6B,CAAC;AAClE,eAAO,MAAM,qBAAqB,2BAA2B,CAAC"}
+{"version":3,"file":"instructions-template.d.ts","sourceRoot":"","sources":["../../src/installer/instructions-template.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AAEH,8DAA8D;AAC9D,eAAO,MAAM,uBAAuB,6BAA6B,CAAC;AAClE,eAAO,MAAM,qBAAqB,2BAA2B,CAAC;AAE9D;;;;;;;;;GASG;AACH,eAAO,MAAM,4BAA4B,60BAShB,CAAC"}

package/lib/dist/installer/instructions-template.js

@@ -1,21 +1,53 @@
 "use strict";
 /**
- * Marker constants for the legacy agent-instructions block.
+ * The marker-fenced agent-instructions block the installer writes into each
+ * agent's instructions file (CLAUDE.md / AGENTS.md / GEMINI.md).
  *
- * Codegraph used to write a `## CodeGraph` usage guide into each
- * agent's instructions file (CLAUDE.md / AGENTS.md / GEMINI.md /
- * codegraph.mdc / Kiro steering doc). That duplicated the guidance the
- * MCP server already emits in its `initialize` response — every agent
- * read the same playbook twice each turn (issue #529). The installer no
- * longer writes an instructions file; the MCP server instructions in
- * `mcp/server-instructions.ts` are the single source of truth.
+ * History: pre-#529 the installer wrote a full usage playbook here, which
+ * duplicated the MCP `initialize` instructions for the main agent — so it
+ * was removed and `mcp/server-instructions.ts` became the single source of
+ * truth. A much smaller block returned for #704, because the MCP
+ * instructions cannot reach two audiences that the instructions FILE does
+ * reach:
  *
- * These markers are retained so install (self-heal on upgrade) and
- * uninstall can find and strip the block a previous install wrote.
+ *  - **Task-tool subagents** — they receive the project instructions file
+ *    in their context but NOT the MCP initialize instructions. They hold
+ *    the codegraph MCP tools only as deferred names and rarely think to
+ *    load them: measured on a forced-delegation flow question (excalidraw,
+ *    sonnet, high effort), subagents loaded + used codegraph in ~1 of 9
+ *    runs without this block, and consistently with it — including runs
+ *    with zero Read/grep fallback.
+ *  - **Non-MCP harnesses** — agents with no MCP client at all can still
+ *    run the `codegraph explore` / `codegraph node` CLI, which prints the
+ *    same output as the MCP tools.
+ *
+ * Keep this block SHORT. The main agent reads it every turn on top of the
+ * server instructions — the #529 duplication-cost argument still bounds
+ * its size. Command names and the two surfaces, nothing more.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.CODEGRAPH_SECTION_END = exports.CODEGRAPH_SECTION_START = void 0;
-/** Markers used by the marker-based section removal. */
+exports.CODEGRAPH_INSTRUCTIONS_BLOCK = exports.CODEGRAPH_SECTION_END = exports.CODEGRAPH_SECTION_START = void 0;
+/** Markers used by the marker-based section write/removal. */
 exports.CODEGRAPH_SECTION_START = '<!-- CODEGRAPH_START -->';
 exports.CODEGRAPH_SECTION_END = '<!-- CODEGRAPH_END -->';
+/**
+ * The full block, markers included, exactly as written to disk.
+ *
+ * The wording is deliberately CONDITIONAL ("in repositories indexed by…"):
+ * a global install writes this into a user-scope file (~/.claude/CLAUDE.md,
+ * ~/.codex/AGENTS.md) that applies to every project the user opens —
+ * including unindexed ones, where an unconditional "this repository is
+ * indexed" claim would send subagents into failing codegraph calls (the
+ * noise the unindexed-session policy exists to prevent).
+ */
+exports.CODEGRAPH_INSTRUCTIONS_BLOCK = `${exports.CODEGRAPH_SECTION_START}
+## CodeGraph
+
+In repositories indexed by CodeGraph (a \`.codegraph/\` directory exists at the repo root), reach for it BEFORE grep/find or reading files when you need to understand or locate code:
+
+- **MCP tools** (when available): \`codegraph_explore\` answers most code questions in one call — the relevant symbols' verbatim source plus the call paths between them. \`codegraph_node\` returns one symbol's source + callers, or reads a whole file with line numbers. If the tools are listed but deferred, load them by name via tool search.
+- **Shell** (always works): \`codegraph explore "<symbol names or question>"\` and \`codegraph node <symbol-or-file>\` print the same output.
+
+If there is no \`.codegraph/\` directory, skip CodeGraph entirely — indexing is the user's decision.
+${exports.CODEGRAPH_SECTION_END}`;
 //# sourceMappingURL=instructions-template.js.map

package/lib/dist/installer/instructions-template.js.map

@@ -1 +1 @@
-{"version":3,"file":"instructions-template.js","sourceRoot":"","sources":["../../src/installer/instructions-template.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;;GAaG;;;AAEH,wDAAwD;AAC3C,QAAA,uBAAuB,GAAG,0BAA0B,CAAC;AACrD,QAAA,qBAAqB,GAAG,wBAAwB,CAAC"}
+{"version":3,"file":"instructions-template.js","sourceRoot":"","sources":["../../src/installer/instructions-template.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;;;AAEH,8DAA8D;AACjD,QAAA,uBAAuB,GAAG,0BAA0B,CAAC;AACrD,QAAA,qBAAqB,GAAG,wBAAwB,CAAC;AAE9D;;;;;;;;;GASG;AACU,QAAA,4BAA4B,GAAG,GAAG,+BAAuB;;;;;;;;;EASpE,6BAAqB,EAAE,CAAC"}

package/lib/dist/installer/targets/claude.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"claude.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/claude.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAKH,OAAO,EACL,WAAW,EAGX,QAAQ,EACR,WAAW,EACZ,MAAM,SAAS,CAAC;AAoLjB;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAsBzE;AA6CD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CA0C9E;AAED,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAoBjF;AAED;;;;;;;;GAQG;AACH,wBAAgB,uBAAuB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAInF;AAED,eAAO,MAAM,YAAY,EAAE,WAAoC,CAAC"}
+{"version":3,"file":"claude.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/claude.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAKH,OAAO,EACL,WAAW,EAGX,QAAQ,EACR,WAAW,EACZ,MAAM,SAAS,CAAC;AAkLjB;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAsBzE;AA6CD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CA0C9E;AAED,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAoBjF;AAED;;;;;;;;GAQG;AACH,wBAAgB,uBAAuB,CAAC,GAAG,EAAE,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAInF;AAED,eAAO,MAAM,YAAY,EAAE,WAAoC,CAAC"}

package/lib/dist/installer/targets/claude.js

@@ -134,16 +134,12 @@ class ClaudeCodeTarget {
         const hookCleanup = cleanupLegacyHooks(loc);
         if (hookCleanup.action === 'removed')
             files.push(hookCleanup);
-        // 3. CLAUDE.md instructions — no longer written. The codegraph
-        // usage guidance now ships solely in the MCP server's `initialize`
-        // response (see `mcp/server-instructions.ts`), which Claude Code
-        // surfaces in the system prompt automatically. Writing it into
-        // CLAUDE.md as well meant the agent read the same playbook twice
-        // every turn (issue #529). Strip any block a previous install left
-        // behind so an upgrade self-heals — same idiom as the hook cleanup.
-        const instrCleanup = removeInstructionsEntry(loc);
-        if (instrCleanup.action === 'removed')
-            files.push(instrCleanup);
+        // 3. CLAUDE.md instructions — the short marker-fenced CodeGraph
+        // block (#704). The MCP initialize instructions reach only the main
+        // agent; CLAUDE.md is what Task-tool subagents (and non-MCP
+        // harnesses) actually see, so the block carries the codegraph
+        // pointers there. Upsert self-heals a stale pre-#529 long block.
+        files.push((0, shared_1.upsertInstructionsEntry)(instructionsPath(loc)));
         return { files };
     }
     uninstall(loc) {