@cleocode/core 2026.9.19 → 2026.9.21

package/dist/adapters/discovery.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"discovery.d.ts","sourceRoot":"","sources":["../../src/adapters/discovery.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,KAAK,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAE7E;;;GAGG;AACH,wBAAgB,wBAAwB,CAAC,WAAW,EAAE,MAAM,GAAG,eAAe,EAAE,CA8B/E;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAKpE"}
+{"version":3,"file":"discovery.d.ts","sourceRoot":"","sources":["../../src/adapters/discovery.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,KAAK,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAG7E;;;GAGG;AACH,wBAAgB,wBAAwB,CAAC,WAAW,EAAE,MAAM,GAAG,eAAe,EAAE,CA8B/E;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAKpE"}

package/dist/adapters/discovery.js

@@ -4,9 +4,9 @@
  *
  * @task T5240
  */
-import { execFileSync } from 'node:child_process';
 import { existsSync, readdirSync, readFileSync } from 'node:fs';
 import { join, resolve } from 'node:path';
+import { findOnPath } from '@cleocode/paths';
 /**
  * Scan the packages/adapters/ directory for adapter packages.
  * Each adapter must have a manifest.json at its root.
@@ -67,15 +67,8 @@ function matchDetectionPattern(pattern) {
             return ((process.env.TERM_PROGRAM ?? '').toLowerCase().includes(processName) ||
                 (process.env.EDITOR ?? '').toLowerCase().includes(processName));
         }
-        case 'cli': {
-            try {
-                execFileSync('which', [pattern.pattern], { stdio: 'ignore', timeout: 3000 });
-                return true;
-            }
-            catch {
-                return false;
-            }
-        }
+        case 'cli':
+            return findOnPath(pattern.pattern) !== null;
         default:
             return false;
     }

package/dist/adapters/discovery.js.map

@@ -1 +1 @@
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+{"version":3,"file":"discovery.js","sourceRoot":"","sources":["../../src/adapters/discovery.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAChE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAE1C,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAE7C;;;GAGG;AACH,MAAM,UAAU,wBAAwB,CAAC,WAAmB;IAC1D,MAAM,WAAW,GAAG,OAAO,CAAC,WAAW,EAAE,UAAU,EAAE,UAAU,CAAC,CAAC;IACjE,IAAI,CAAC,UAAU,CAAC,WAAW,CAAC;QAAE,OAAO,EAAE,CAAC;IAExC,MAAM,SAAS,GAAsB,EAAE,CAAC;IACxC,IAAI,OAAiB,CAAC;IACtB,IAAI,CAAC;QACH,OAAO,GAAG,WAAW,CAAC,WAAW,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC;aACxD,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC;aAC9B,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACxB,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;IAED,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;QAC1B,MAAM,UAAU,GAAG,IAAI,CAAC,WAAW,EAAE,GAAG,CAAC,CAAC;QAC1C,MAAM,YAAY,GAAG,IAAI,CAAC,UAAU,EAAE,eAAe,CAAC,CAAC;QACvD,IAAI,CAAC,UAAU,CAAC,YAAY,CAAC;YAAE,SAAS;QACxC,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,YAAY,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;YAChD,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAoB,CAAC;YACpD,kEAAkE;YAClE,QAAQ,CAAC,WAAW,GAAG,OAAO,CAAC,UAAU,CAAC,CAAC;YAC3C,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC3B,CAAC;QAAC,MAAM,CAAC;YACP,2BAA2B;QAC7B,CAAC;IACH,CAAC;IAED,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,cAAc,CAAC,QAA4B;IACzD,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;QAC/B,IAAI,qBAAqB,CAAC,OAAO,CAAC;YAAE,OAAO,IAAI,CAAC;IAClD,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED,SAAS,qBAAqB,CAAC,OAAyB;IACtD,QAAQ,OAAO,CAAC,IAAI,EAAE,CAAC;QACrB,KAAK,KAAK;YACR,OAAO,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,OAAO,CAAC,KAAK,SAAS,CAAC;QACpD,KAAK,MAAM;YACT,OAAO,UAAU,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QACrC,KAAK,SAAS,CAAC,CAAC,CAAC;YACf,uDAAuD;YACvD,8DAA8D;YAC9D,MAAM,WAAW,GAAG,OAAO,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC;YAClD,OAAO,CACL,CAAC,OAAO,CAAC,GAAG,CAAC,YAAY,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;gBACpE,CAAC,OAAO,CAAC,GAAG,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,CAC/D,CAAC;QACJ,CAAC;QACD,KAAK,KAAK;YACR,OAAO,UAAU,CAAC,OAAO,CAAC,OAAO,CAAC,KAAK,IAAI,CAAC;QAC9C;YACE,OAAO,KAAK,CAAC;IACjB,CAAC;AACH,CAAC"}

package/dist/adrs/link-pipeline.js

@@ -14,7 +14,7 @@
  * @see ADR-017 §5.3 for adr_task_links and adr_relations schemas
  */
 import { existsSync, readdirSync, readFileSync } from 'node:fs';
-import { join } from 'node:path';
+import { basename, join } from 'node:path';
 import { adrRelations, adrTaskLinks, architectureDecisions } from '../store/tasks-schema.js';
 import { parseAdrFile } from './parse.js';
 /**
@@ -76,7 +76,7 @@ export async function linkPipelineAdr(projectRoot, taskId) {
     const db = await getDb(projectRoot);
     const now = new Date().toISOString();
     for (const filePath of matchingFiles) {
-        const filename = filePath.split('/').pop();
+        const filename = basename(filePath);
         try {
             const record = parseAdrFile(filePath, projectRoot);
             const fm = record.frontmatter;

package/dist/adrs/link-pipeline.js.map

@@ -1 +1 @@
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
package/dist/adrs/parse.js

@@ -7,7 +7,7 @@
  * @task T4792
  */
 import { readFileSync } from 'node:fs';
-import { join } from 'node:path';
+import { basename, isAbsolute, join } from 'node:path';
 /** Extract ADR ID from filename (e.g., 'ADR-007-domain-consolidation.md' -> 'ADR-007') */
 export function extractAdrId(filename) {
     const match = filename.match(/^(ADR-\d+)/);
@@ -38,9 +38,9 @@ export function extractTitle(content) {
 }
 /** Parse a single ADR markdown file into an AdrRecord */
 export function parseAdrFile(filePath, projectRoot) {
-    const absolutePath = filePath.startsWith('/') ? filePath : join(projectRoot, filePath);
+    const absolutePath = isAbsolute(filePath) ? filePath : join(projectRoot, filePath);
     const content = readFileSync(absolutePath, 'utf-8');
-    const filename = filePath.split('/').pop();
+    const filename = basename(filePath);
     return {
         id: extractAdrId(filename),
         file: filePath,

package/dist/adrs/parse.js.map

@@ -1 +1 @@
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package/dist/agents/invoke-meta-agent.d.ts.map

@@ -1 +1 @@
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package/dist/agents/invoke-meta-agent.js

@@ -51,10 +51,14 @@ function readProjectContext(projectRoot) {
  * called and the result is serialized as `USER_PROFILE` in the token payload.
  */
 // biome-ignore lint/suspicious/noExplicitAny: nexusDb is a Drizzle database handle; typed as any to avoid circular imports
-async function readUserProfile(nexusDb) {
+async function readUserProfile(nexusDb, projectRoot) {
     try {
-        const { listUserProfile } = await import('../nexus/user-profile.js');
-        const rows = await listUserProfile(nexusDb, { minConfidence: 0.5 });
+        const { listUserProfile, resolveTraitProjectId } = await import('../nexus/user-profile.js');
+        // T12543: only user-global traits + traits derived in this project.
+        const rows = await listUserProfile(nexusDb, {
+            minConfidence: 0.5,
+            visibleInProject: resolveTraitProjectId(projectRoot),
+        });
         if (!rows || rows.length === 0)
             return null;
         return JSON.stringify(rows);
@@ -132,7 +136,7 @@ export async function invokeMetaAgent(options) {
     }
     // Thread user_profile when nexusDb provided and not already set
     if (nexusDb && !enrichedTokens.USER_PROFILE) {
-        const profileJson = await readUserProfile(nexusDb);
+        const profileJson = await readUserProfile(nexusDb, projectRoot);
         if (profileJson) {
             enrichedTokens.USER_PROFILE = profileJson;
         }

package/dist/agents/invoke-meta-agent.js.map

@@ -1 +1 @@
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+{"version":3,"file":"invoke-meta-agent.js","sourceRoot":"","sources":["../../src/agents/invoke-meta-agent.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAEH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACnD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC3C,OAAO,EAAE,oBAAoB,EAAE,MAAM,4BAA4B,CAAC;AAwGlE,8EAA8E;AAC9E,mBAAmB;AACnB,8EAA8E;AAE9E;;;GAGG;AACH,SAAS,kBAAkB,CAAC,WAAmB;IAC7C,MAAM,GAAG,GAAG,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,sBAAsB,CAAC,CAAC;IAC/D,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC;QAAE,OAAO,IAAI,CAAC;IAClC,IAAI,CAAC;QACH,OAAO,YAAY,CAAC,GAAG,EAAE,OAAO,CAAC,CAAC;IACpC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED;;;;;;GAMG;AACH,2HAA2H;AAC3H,KAAK,UAAU,eAAe,CAAC,OAAY,EAAE,WAAmB;IAC9D,IAAI,CAAC;QACH,MAAM,EAAE,eAAe,EAAE,qBAAqB,EAAE,GAAG,MAAM,MAAM,CAAC,0BAA0B,CAAC,CAAC;QAC5F,oEAAoE;QACpE,MAAM,IAAI,GAAG,MAAM,eAAe,CAAC,OAAO,EAAE;YAC1C,aAAa,EAAE,GAAG;YAClB,gBAAgB,EAAE,qBAAqB,CAAC,WAAW,CAAC;SACrD,CAAC,CAAC;QACH,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,IAAI,CAAC;QAC5C,OAAO,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;IAC9B,CAAC;IAAC,MAAM,CAAC;QACP,wEAAwE;QACxE,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,8EAA8E;AAC9E,aAAa;AACb,8EAA8E;AAE9E;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,OAA+B;IACnE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,EAAE,EAAE,OAAO,EAAE,MAAM,GAAG,KAAK,EAAE,GAAG,OAAO,CAAC;IACpE,MAAM,WAAW,GAAG,YAAY,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC;IAEtD,IAAI,MAAM,EAAE,CAAC;QACX,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,mBAAmB,EAAE,CAAC;IACzD,CAAC;IAED,yCAAyC;IACzC,MAAM,OAAO,GAAG,oBAAoB,EAAE,CAAC;IACvC,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,OAAO;YACL,OAAO,EAAE,KAAK;YACd,MAAM,EAAE,8DAA8D,SAAS,OAAO;SACvF,CAAC;IACJ,CAAC;IACD,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,EAAE,GAAG,SAAS,OAAO,CAAC,CAAC;IACpD,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC1B,OAAO;YACL,OAAO,EAAE,KAAK;YACd,MAAM,EAAE,8BAA8B,QAAQ,EAAE;SACjD,CAAC;IACJ,CAAC;IAED,iFAAiF;IACjF,MAAM,cAAc,GAAoB,EAAE,GAAG,MAAM,EAAE,CAAC;IAEtD,kEAAkE;IAClE,IAAI,CAAC,cAAc,CAAC,eAAe,EAAE,CAAC;QACpC,MAAM,OAAO,GAAG,kBAAkB,CAAC,WAAW,CAAC,CAAC;QAChD,IAAI,OAAO,EAAE,CAAC;YACZ,cAAc,CAAC,eAAe,GAAG,OAAO,CAAC;QAC3C,CAAC;IACH,CAAC;IAED,gEAAgE;IAChE,IAAI,OAAO,IAAI,CAAC,cAAc,CAAC,YAAY,EAAE,CAAC;QAC5C,MAAM,WAAW,GAAG,MAAM,eAAe,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC;QAChE,IAAI,WAAW,EAAE,CAAC;YAChB,cAAc,CAAC,YAAY,GAAG,WAAW,CAAC;QAC5C,CAAC;IACH,CAAC;IAED,gEAAgE;IAChE,IAAI,CAAC;QACH,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,MAAM,CAAC,oBAAoB,CAAC,CAAC;QAEzD,kCAAkC;QAClC,MAAM,OAAO,GAAa,EAAE,CAAC;QAC7B,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,cAAc,CAAC,EAAE,CAAC;YAC1D,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,KAAK,EAAE,EAAE,CAAC;gBACxC,OAAO,CAAC,IAAI,CAAC,OAAO,EAAE,GAAG,GAAG,IAAI,KAAK,EAAE,CAAC,CAAC;YAC3C,CAAC;QACH,CAAC;QAED,MAAM,MAAM,GAAG,SAAS,CACtB,MAAM,EACN,CAAC,aAAa,EAAE,OAAO,EAAE,SAAS,EAAE,eAAe,EAAE,GAAG,OAAO,CAAC,EAChE;YACE,GAAG,EAAE,WAAW;YAChB,QAAQ,EAAE,OAAO;YACjB,OAAO,EAAE,OAAO,EAAE,6CAA6C;YAC/D,KAAK,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC;SAClC,CACF,CAAC;QAEF,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;YACjB,OAAO;gBACL,OAAO,EAAE,KAAK;gBACd,MAAM,EAAE,qBAAqB,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE;aACpD,CAAC;QACJ,CAAC;QAED,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,OAAO;gBACL,OAAO,EAAE,KAAK;gBACd,MAAM,EAAE,+BAA+B,MAAM,CAAC,MAAM,KAAK,MAAM,CAAC,MAAM,EAAE,IAAI,EAAE,IAAI,aAAa,EAAE;aAClG,CAAC;QACJ,CAAC;QAED,0CAA0C;QAC1C,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,IAAI,EAAE,CAAC;QACnC,MAAM,aAAa,GAAG,uCAAuC,CAAC;QAC9D,MAAM,OAAO,GAAa,EAAE,CAAC;QAC7B,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;YACtC,MAAM,KAAK,GAAG,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC;YAC9C,IAAI,KAAK,EAAE,CAAC;gBACV,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;YAChC,CAAC;QACH,CAAC;QAED,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,EAAE,CAAC;IAC5C,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,OAAO;YACL,OAAO,EAAE,KAAK;YACd,MAAM,EAAE,sBAAsB,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE;SACjF,CAAC;IACJ,CAAC;AACH,CAAC;AAED;;;;;;;;;;;;;;GAcG;AACH,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,WAAmB,EACnB,aAAqB,EACrB,aAAqB;AACrB,2HAA2H;AAC3H,OAAa;IAEb,MAAM,WAAW,GACf,WAAW;SACR,KAAK,CAAC,GAAG,CAAC;SACV,GAAG,EAAE;QACN,EAAE,WAAW,EAAE;SACd,OAAO,CAAC,aAAa,EAAE,GAAG,CAAC,IAAI,SAAS,CAAC;IAE9C,OAAO,eAAe,CAAC;QACrB,SAAS,EAAE,iBAAiB;QAC5B,WAAW;QACX,OAAO;QACP,MAAM,EAAE;YACN,YAAY,EAAE,WAAW;YACzB,eAAe,EAAE,aAAa;YAC9B,cAAc,EAAE,aAAa;SAC9B;KACF,CAAC,CAAC;AACL,CAAC"}

package/dist/bootstrap.d.ts

@@ -57,7 +57,11 @@ export declare function bootstrapGlobalCleo(options?: BootstrapOptions): Promise
  * Behaviour:
  *   - If `~/.cleo` does not exist           → create the symlink.
  *   - If it is already the correct symlink  → no-op.
- *   - If it is a symlink to a wrong target  → warn; do not modify.
+ *   - If it is a DANGLING symlink            → replace it (T12596: nothing is
+ *                                             reachable through it, so the
+ *                                             repair is lossless; receipt kept).
+ *   - If it is a symlink to a live wrong dir → warn with the repair command;
+ *                                             do not modify.
  *   - If it is a real directory with files  → move to `~/.cleo.bak-<ts>`
  *                                             and create the symlink (user
  *                                             informed via ctx.created).

package/dist/bootstrap.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bootstrap.d.ts","sourceRoot":"","sources":["../src/bootstrap.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAsDH,iEAAiE;AACjE,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,uCAAuC;AACvC,MAAM,WAAW,gBAAgB;IAC/B,wCAAwC;IACxC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,0DAA0D;IAC1D,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAID;;;;;;;;;GASG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,CAAC,EAAE,gBAAgB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAiD/F;AAID;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA4BG;AACH,wBAAsB,iBAAiB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8D5E;AAyND;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,IAAI,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAEjF;AAID;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAahF;AAID;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,uBAAuB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CA0BlF;AA6CD;;;;;;GAMG;AACH,MAAM,WAAW,2BAA2B;IAC1C,mGAAmG;IACnG,QAAQ,EAAE,OAAO,CAAC;IAClB,0FAA0F;IAC1F,gBAAgB,EAAE,OAAO,CAAC;IAC1B,wGAAwG;IACxG,mBAAmB,EAAE,OAAO,CAAC;IAC7B,+FAA+F;IAC/F,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,wFAAwF;IACxF,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,uBAAuB,IAAI,OAAO,CAAC,2BAA2B,CAAC,CAqEpF"}
+{"version":3,"file":"bootstrap.d.ts","sourceRoot":"","sources":["../src/bootstrap.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AA6DH,iEAAiE;AACjE,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,uCAAuC;AACvC,MAAM,WAAW,gBAAgB;IAC/B,wCAAwC;IACxC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,0DAA0D;IAC1D,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAID;;;;;;;;;GASG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,CAAC,EAAE,gBAAgB,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAiD/F;AAID;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AACH,wBAAsB,iBAAiB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAkF5E;AAuOD;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,IAAI,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAEjF;AAID;;GAEG;AACH,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CAahF;AAID;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,uBAAuB,CAAC,GAAG,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC,CA0BlF;AA6CD;;;;;;GAMG;AACH,MAAM,WAAW,2BAA2B;IAC1C,mGAAmG;IACnG,QAAQ,EAAE,OAAO,CAAC;IAClB,0FAA0F;IAC1F,gBAAgB,EAAE,OAAO,CAAC;IAC1B,wGAAwG;IACxG,mBAAmB,EAAE,OAAO,CAAC;IAC7B,+FAA+F;IAC/F,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,wFAAwF;IACxF,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAsB,uBAAuB,IAAI,OAAO,CAAC,2BAA2B,CAAC,CAqEpF"}

package/dist/bootstrap.js

@@ -18,6 +18,7 @@ import { CAAMP_DAMAGED_END_PATTERN_SOURCE, CAAMP_DAMAGED_START_PATTERN_SOURCE, C
 import { resolveLegacyCleoDir } from '@cleocode/paths';
 import { getAgentsHome, getCanonicalTemplatesTildePath, getCleoHome, getCleoTemplatesTildePath, getProjectRoot, } from './paths.js';
 import { ensureGlobalHome, getPackageRoot } from './scaffold.js';
+import { auditCleoLink, CANONICAL_HUB_TEMPLATE_REF, CLEO_LINK_REPAIR_COMMAND, repairCleoLink, resolveGlobalHubContent, } from './system/cleo-link.js';
 import { getTemplateById } from './templates/registry.js';
 import { writeFileAtomic } from './tools/fs.js';
 /**
@@ -120,7 +121,11 @@ export async function bootstrapGlobalCleo(options) {
  * Behaviour:
  *   - If `~/.cleo` does not exist           → create the symlink.
  *   - If it is already the correct symlink  → no-op.
- *   - If it is a symlink to a wrong target  → warn; do not modify.
+ *   - If it is a DANGLING symlink            → replace it (T12596: nothing is
+ *                                             reachable through it, so the
+ *                                             repair is lossless; receipt kept).
+ *   - If it is a symlink to a live wrong dir → warn with the repair command;
+ *                                             do not modify.
  *   - If it is a real directory with files  → move to `~/.cleo.bak-<ts>`
  *                                             and create the symlink (user
  *                                             informed via ctx.created).
@@ -139,6 +144,24 @@ export async function ensureCleoSymlink(ctx) {
     try {
         // Ensure the canonical target exists so the symlink is never dangling
         await mkdir(canonicalTarget, { recursive: true });
+        // T12596: a dangling link (e.g. a Linux target carried to macOS by
+        // dotfiles) reads as ABSENT through `existsSync`, and creating a link over
+        // it failed with EEXIST — so the hub reference never resolved. Replace it.
+        const audit = auditCleoLink({ path: legacyPath, canonicalTarget });
+        if (audit.state === 'dangling') {
+            const { receipt } = await repairCleoLink({
+                path: legacyPath,
+                canonicalTarget,
+                states: ['dangling'],
+            });
+            if (receipt.action === 'relinked') {
+                ctx.created.push(`~/.cleo relinked: dangling target ${receipt.before.target} → ${canonicalTarget} (receipt ${receipt.receiptId})`);
+            }
+            else {
+                ctx.warnings.push(`~/.cleo is a dangling link: ${receipt.reason ?? 'not repaired'}`);
+            }
+            return;
+        }
         // If nothing at ~/.cleo, just create the symlink
         if (!existsSync(legacyPath)) {
             await symlink(canonicalTarget, legacyPath, linkType);
@@ -153,7 +176,7 @@ export async function ensureCleoSymlink(ctx) {
             if (normalizedCurrentTarget === normalize(canonicalTarget)) {
                 return; // no-op, already correct
             }
-            ctx.warnings.push(`~/.cleo is a symlink pointing to ${currentTarget}, expected ${canonicalTarget}. Leaving untouched — remove it manually if you want the canonical link.`);
+            ctx.warnings.push(`~/.cleo is a symlink pointing to ${currentTarget}, expected ${canonicalTarget}. Leaving untouched — run \`${CLEO_LINK_REPAIR_COMMAND}\` to relink it (the old link is preserved).`);
             return;
         }
         // Real directory — migrate contents and replace with symlink
@@ -325,9 +348,17 @@ async function injectAgentsHub(ctx) {
             // CLEO_HOME-derived path. CLEO_HOME may be a temp directory in test
             // environments, which would write a stale temp-path block into the real
             // ~/.agents/AGENTS.md on every test run (T9020 / T1929).
-            const templateRef = `@${getCanonicalTemplatesTildePath()}/CLEO-INJECTION.md`;
-            const action = await inject(globalAgentsMd, templateRef);
-            ctx.created.push(`~/.agents/AGENTS.md (${action})`);
+            //
+            // T12596: a reference that does not resolve delivers NOTHING, silently.
+            // When ~/.cleo/templates is unreachable (a link Step 0.5 could not
+            // repair), embed the protocol instead and name the repair command.
+            const installed = getInjectionInstallPath();
+            const hub = resolveGlobalHubContent(existsSync(installed) ? readFileSync(installed, 'utf-8') : null);
+            const action = await inject(globalAgentsMd, hub.content);
+            ctx.created.push(`~/.agents/AGENTS.md (${action}${hub.mode === 'embedded' ? ', protocol embedded' : ''})`);
+            if (hub.mode === 'embedded') {
+                ctx.warnings.push(`~/.agents/AGENTS.md: ${CANONICAL_HUB_TEMPLATE_REF} does not resolve (~/.cleo is ${hub.audit.state}); embedded the protocol instead. Run: ${CLEO_LINK_REPAIR_COMMAND}`);
+            }
             // Post-inject validation: verify the file is clean
             const postContent = await readFile(globalAgentsMd, 'utf8');
             const caampBlocks = postContent.match(/<!-- CAAMP:START -->/g);
@@ -560,22 +591,11 @@ async function verifyBootstrapHealth(ctx) {
         }
         // Check 2: ~/.cleo symlink integrity. On fresh installs Step 0.5 created
         // the link; here we verify it stayed intact (user didn't replace it).
-        const legacyPath = resolveLegacyCleoDir();
-        const canonicalTarget = getCleoHome();
-        if (existsSync(legacyPath)) {
-            const stat = lstatSync(legacyPath);
-            if (stat.isSymbolicLink()) {
-                const target = await readlink(legacyPath);
-                if (target !== canonicalTarget) {
-                    ctx.warnings.push(`Health: ~/.cleo points to ${target}, expected ${canonicalTarget}. Remove it and re-run bootstrap.`);
-                }
-            }
-            else {
-                ctx.warnings.push(`Health: ~/.cleo is not a symlink — canonical layout requires it to link to ${canonicalTarget}. Re-run bootstrap to migrate.`);
-            }
-        }
-        else {
-            ctx.warnings.push(`Health: ~/.cleo symlink missing — re-run bootstrap so @~/.cleo/* injection references resolve correctly.`);
+        // T12596: classify with lstat — a dangling link used to read as "missing".
+        const link = auditCleoLink();
+        if (link.state !== 'canonical') {
+            ctx.warnings.push(`Health: ~/.cleo is ${link.state}${link.target ? ` (→ ${link.target})` : ''}, expected a link to ${link.canonicalTarget}` +
+                (link.remedy ? `. Run: ${link.remedy}` : '. Resolve it manually.'));
         }
         // Check 3: AGENTS.md references the correct path
         if (existsSync(agentsMd)) {

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package/dist/cloud/crypto.d.ts

@@ -0,0 +1,47 @@
+export declare class DecryptError extends Error {
+    constructor(message?: string);
+}
+export declare const randomKey: () => Buffer;
+/** Derive a named key from a parent key (no salt). Examples: home-stream, verifier. */
+export declare function deriveKey(parent: Uint8Array, purpose: string): Buffer;
+/** AEAD-encrypt `plaintext` under `key`, bound to `context` (AAD) and `purpose` (HKDF info). */
+export declare function seal(key: Uint8Array, plaintext: Uint8Array, purpose: string, context: string): Buffer;
+export declare function open(key: Uint8Array, envelope: Uint8Array, purpose: string, context: string): Buffer;
+export interface KeyPair {
+    publicKey: Buffer;
+    privateKey: Buffer;
+}
+export declare function generateX25519(): KeyPair;
+/** Encrypt to a recipient's X25519 public key. Only the holder of the private key can open it. */
+export declare function sealTo(recipientPublic: Uint8Array, plaintext: Uint8Array, context: string): Buffer;
+export declare function openSealed(recipient: KeyPair, sealed: Uint8Array, context: string): Buffer;
+export declare function generateEd25519(): KeyPair;
+export declare function signEd25519(kp: KeyPair, message: Uint8Array): Buffer;
+export declare function verifyEd25519(publicKey: Uint8Array, message: Uint8Array, signature: Uint8Array): boolean;
+export interface KdfParams {
+    algorithm: 'argon2id';
+    memoryKiB: number;
+    iterations: number;
+    parallelism: number;
+    salt: string;
+}
+export declare const DEFAULT_KDF: {
+    readonly memoryKiB: 65536;
+    readonly iterations: 3;
+    readonly parallelism: 1;
+};
+export declare function newKdfParams(): KdfParams;
+/**
+ * Refuse KDF parameters outside KDF_LIMITS. They come from the server, which must not be able to weaken
+ * the passphrase stretch or make the client allocate unbounded memory.
+ */
+export declare function checkKdfParams(p: KdfParams): void;
+export declare function passphraseKey(passphrase: string, p: KdfParams): Promise<Buffer>;
+export declare function encodeRecoveryKey(key: Uint8Array): string;
+export declare function decodeRecoveryKey(text: string): Buffer;
+export declare function constantTimeEqual(a: Uint8Array, b: Uint8Array): boolean;
+export declare const sha256Hex: (b: Uint8Array) => string;
+export declare const hmacSha256: (key: Uint8Array, message: Uint8Array) => Buffer;
+/** A UUIDv7 (RFC 9562 §5.7): 48-bit Unix millis, then random bits. Used to mint checkpoint ids. */
+export declare function uuidv7(now?: number): string;
+//# sourceMappingURL=crypto.d.ts.map

package/dist/cloud/crypto.d.ts.map

@@ -0,0 +1 @@
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