@cleocode/core 2026.7.2 → 2026.8.2

package/dist/memory/brain-links.js

@@ -7,40 +7,86 @@
  * @task T5156
  * @epic T5149
  */
-import { taskExistsInTasksDb } from '../store/cross-db-cleanup.js';
+import { taskExistsInTasksDb, taskExistsInTasksDbFresh } from '../store/cross-db-cleanup.js';
 import { getBrainAccessor } from '../store/memory-accessor.js';
 import { getDb } from '../store/sqlite.js';
-/**
- * Link a memory entry to a task.
- *
- * @task T5156
- */
-export async function linkMemoryToTask(projectRoot, memoryType, memoryId, taskId, linkType) {
-    if (!memoryId || !taskId) {
-        throw new Error('memoryId and taskId are required');
-    }
-    // Write-guard: reject stale task IDs before creating cross-db reference
-    const tasksDb = await getDb(projectRoot);
-    if (!(await taskExistsInTasksDb(taskId, tasksDb))) {
-        throw new Error(`Write-guard: task ${taskId} does not exist in tasks.db — refusing to create brain link`);
-    }
+async function createMemoryTaskLink(projectRoot, memoryType, memoryId, taskId, linkType) {
     const accessor = await getBrainAccessor(projectRoot);
-    // Check if link already exists
     const existingLinks = await accessor.getLinksForMemory(memoryType, memoryId);
     const duplicate = existingLinks.find((l) => l.taskId === taskId && l.linkType === linkType);
-    if (duplicate) {
+    if (duplicate)
         return duplicate;
-    }
     await accessor.addLink({
         memoryType,
         memoryId,
         taskId,
         linkType,
     });
-    // Return the created link
     const links = await accessor.getLinksForMemory(memoryType, memoryId);
     return links.find((l) => l.taskId === taskId && l.linkType === linkType);
 }
+/**
+ * Link a memory entry to a task.
+ *
+ * @param projectRoot - Project root containing the task and brain databases.
+ * @param memoryType - Type of memory entry to link.
+ * @param memoryId - Memory entry identifier.
+ * @param taskId - Task identifier to validate and link.
+ * @param linkType - Relationship represented by the link.
+ * @param tasksDbOverride - Existing task handle retained by a multi-step caller.
+ * @returns The existing or newly created memory link.
+ * @task T5156 T12034
+ */
+export async function linkMemoryToTask(projectRoot, memoryType, memoryId, taskId, linkType, tasksDbOverride) {
+    if (!memoryId || !taskId) {
+        throw new Error('memoryId and taskId are required');
+    }
+    // Write-guard: reject stale task IDs before creating cross-db reference
+    let taskExists;
+    let tasksDb = null;
+    try {
+        tasksDb = tasksDbOverride ?? (await getDb(projectRoot));
+        if (await taskExistsInTasksDb(taskId, tasksDb)) {
+            taskExists = true;
+        }
+    }
+    catch {
+        // The independent probe below handles a closed shared handle.
+    }
+    if (taskExists !== true) {
+        try {
+            taskExists = await taskExistsInTasksDbFresh(taskId, tasksDb, projectRoot);
+        }
+        catch {
+            // Validation unavailable is not proof of absence. Preserve the link.
+        }
+    }
+    if (taskExists === false) {
+        throw new Error(`Write-guard: task ${taskId} does not exist in tasks.db — refusing to create brain link`);
+    }
+    return createMemoryTaskLink(projectRoot, memoryType, memoryId, taskId, linkType);
+}
+/**
+ * Link memory to a task whose existence was validated before a multi-write batch.
+ *
+ * This preserves the soft-FK decision across queued BRAIN writes that may replace
+ * the caller's shared project handle. Callers MUST validate the task immediately
+ * before starting the batch; general callers should use {@link linkMemoryToTask}.
+ *
+ * @param projectRoot - Project root containing the consolidated database.
+ * @param memoryType - Type of memory entry to link.
+ * @param memoryId - Memory entry identifier.
+ * @param taskId - Prevalidated task identifier.
+ * @param linkType - Relationship represented by the link.
+ * @returns The existing or newly created memory link.
+ * @task T12034
+ */
+export async function linkPrevalidatedMemoryToTask(projectRoot, memoryType, memoryId, taskId, linkType) {
+    if (!memoryId || !taskId) {
+        throw new Error('memoryId and taskId are required');
+    }
+    return createMemoryTaskLink(projectRoot, memoryType, memoryId, taskId, linkType);
+}
 /**
  * Remove a link between a memory entry and a task.
  *

package/dist/memory/brain-links.js.map

@@ -1 +1 @@
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package/dist/memory/brain-maintenance.js

@@ -73,7 +73,7 @@ export async function runPruneSweep(projectRoot, options) {
     let wouldDelete = 0;
     const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     if (!nativeDb) {
         return { deleted: 0, wouldDelete: 0, dryRun, byTable: {} };
     }

package/dist/memory/brain-maintenance.js.map

@@ -1 +1 @@
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package/dist/memory/brain-page-nodes.js

@@ -131,7 +131,7 @@ export async function getImpact(projectRoot, nodeId, params = {}) {
         // For directional filtering, re-query edges to determine which nodes are
         // reachable in the requested direction only.
         await getBrainDb(projectRoot);
-        const nativeDb = getBrainNativeDb();
+        const nativeDb = getBrainNativeDb(projectRoot);
         if (!nativeDb)
             return all;
         // Build the set of nodes reachable in the requested direction via raw SQL.
@@ -216,7 +216,7 @@ export async function getContext(projectRoot, nodeId) {
 export async function listEdgeTypes(projectRoot) {
     try {
         await getBrainDb(projectRoot);
-        const nativeDb = getBrainNativeDb();
+        const nativeDb = getBrainNativeDb(projectRoot);
         if (!nativeDb)
             return [];
         const rows = typedAll(nativeDb.prepare(`SELECT DISTINCT edge_type FROM brain_page_edges ORDER BY edge_type ASC`));
@@ -287,7 +287,7 @@ export async function materializeXfkEdges(projectRoot) {
     };
     try {
         await getBrainDb(projectRoot);
-        const nativeDb = getBrainNativeDb();
+        const nativeDb = getBrainNativeDb(projectRoot);
         if (!nativeDb)
             return result;
         const now = new Date().toISOString().replace('T', ' ').slice(0, 19);
@@ -401,7 +401,7 @@ export async function queryGraphNodes(projectRoot, limit = 500) {
     const empty = { nodes: [], edges: [], totalNodes: 0, totalEdges: 0 };
     try {
         await getBrainDb(projectRoot);
-        const nativeDb = getBrainNativeDb();
+        const nativeDb = getBrainNativeDb(projectRoot);
         if (!nativeDb)
             return empty;
         // Build the IN-clause for the sentience node types.

package/dist/memory/brain-page-nodes.js.map

@@ -1 +1 @@
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package/dist/memory/brain-reasoning.js

@@ -137,7 +137,7 @@ export async function reasonWhySymbol(symbolId, projectRoot) {
     };
     try {
         await getBrainDb(projectRoot);
-        const brainNative = getBrainNativeDb();
+        const brainNative = getBrainNativeDb(projectRoot);
         if (!brainNative)
             return emptyResult;
         // Edge types that connect brain nodes to code symbols

package/dist/memory/brain-reasoning.js.map

@@ -1 +1 @@
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package/dist/memory/brain-search.js

@@ -195,7 +195,7 @@ export async function searchBrain(projectRoot, query, options) {
     // Ensure brain.db is initialized
     const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     if (!nativeDb) {
         return { decisions: [], patterns: [], learnings: [], observations: [] };
     }

package/dist/memory/brain-search.js.map

@@ -1 +1 @@
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package/dist/memory/brain-similarity.js

@@ -55,7 +55,7 @@ export async function searchSimilar(query, projectRoot, limit) {
     // Ensure brain.db is initialized
     const { getBrainDb, getBrainNativeDb, isBrainVecLoaded } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     if (!nativeDb)
         return [];
     // Require sqlite-vec for KNN queries

package/dist/memory/brain-similarity.js.map

@@ -1 +1 @@
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package/dist/memory/brain-stdp.js

@@ -376,7 +376,7 @@ function hasMinimumRetrievalsSinceLastPlasticity(nativeDb, minCount = 2, session
 export async function shouldRunPlasticity(projectRoot, sessionId = null, minRetrievalsForPlasticity = 2) {
     const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     if (!nativeDb)
         return true; // Err on the side of running
     const hasMinimum = hasMinimumRetrievalsSinceLastPlasticity(nativeDb, minRetrievalsForPlasticity, sessionId);
@@ -513,7 +513,7 @@ async function applyStdpPlasticityImpl(projectRoot, options) {
     }
     const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     const result = {
         ltpEvents: 0,
         ltdEvents: 0,
@@ -901,7 +901,7 @@ async function applyStdpPlasticityImpl(projectRoot, options) {
 export async function getPlasticityStats(projectRoot, limit = 20) {
     const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     const empty = {
         totalEvents: 0,
         ltpCount: 0,
@@ -1098,7 +1098,7 @@ export async function backfillRewardSignals(projectRoot, sessionId, lookbackDays
     try {
         const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
         await getBrainDb(projectRoot);
-        const nativeDb = getBrainNativeDb();
+        const nativeDb = getBrainNativeDb(projectRoot);
         if (!nativeDb)
             return result;
         // Guard: retrieval log must exist
@@ -1208,7 +1208,7 @@ export async function applyHomeostaticDecay(projectRoot, options) {
     const result = { edgesDecayed: 0, edgesPruned: 0 };
     const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     if (!nativeDb)
         return result;
     // Guard: brain_page_edges must exist
@@ -1368,7 +1368,7 @@ export async function pruneStaleHistory(projectRoot, options) {
     const weightHistoryRowCap = options?.weightHistoryRowCap ?? MAX_WEIGHT_HISTORY_ROW_CAP;
     const { getBrainDb, getBrainNativeDb } = await import('../store/memory-sqlite.js');
     await getBrainDb(projectRoot);
-    const nativeDb = getBrainNativeDb();
+    const nativeDb = getBrainNativeDb(projectRoot);
     if (!nativeDb)
         return result;
     // ── Compute cutoff timestamp ──────────────────────────────────────────────