@cleocode/core 2026.4.41 → 2026.4.43

package/dist/nexus/nexus-bridge.js

@@ -1,321 +0,0 @@
-/**
- * Nexus Bridge Generator
- *
- * Generates .cleo/nexus-bridge.md from nexus.db content. This file is
- * the code intelligence equivalent of memory-bridge.md — it summarizes
- * the codebase graph for agent consumption.
- *
- * Content assembly:
- *   - Index status (file count, node count, relation count, last indexed)
- *   - Symbol counts by kind (functions, classes, methods, etc.)
- *   - Relation counts by type (calls, imports, extends, etc.)
- *   - Top entry points (most outgoing CALLS edges, exported)
- *   - Functional clusters (communities by symbol count)
- *   - Code intelligence command reference
- *
- * Regeneration triggers:
- *   - cleo nexus analyze (called after pipeline flush)
- *   - Manual: cleo nexus refresh-bridge
- *
- * @task T551
- * @epic T549
- */
-import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'node:fs';
-import { join } from 'node:path';
-// ============================================================================
-// DB helpers
-// ============================================================================
-/** Type-safe wrapper for DatabaseSync.prepare().all(). */
-function typedAll(db, sql, ...params) {
-    return db.prepare(sql).all(...params);
-}
-/** Type-safe wrapper for DatabaseSync.prepare().get(). */
-function typedGet(db, sql, ...params) {
-    return db.prepare(sql).get(...params);
-}
-// ============================================================================
-// Query helpers
-// ============================================================================
-/** Query total node/relation counts and last indexed timestamp. */
-function queryIndexMeta(db, projectId) {
-    try {
-        const nodeMeta = typedGet(db, `SELECT COUNT(*) as total_nodes,
-              COUNT(CASE WHEN kind = 'file' THEN 1 END) as file_count,
-              MAX(indexed_at) as last_indexed_at
-       FROM nexus_nodes
-       WHERE project_id = ?`, projectId);
-        const relMeta = typedGet(db, `SELECT COUNT(*) as total_relations
-       FROM nexus_relations
-       WHERE project_id = ?`, projectId);
-        return {
-            total_nodes: nodeMeta?.total_nodes ?? 0,
-            total_relations: relMeta?.total_relations ?? 0,
-            file_count: nodeMeta?.file_count ?? 0,
-            last_indexed_at: nodeMeta?.last_indexed_at ?? null,
-        };
-    }
-    catch {
-        return {
-            total_nodes: 0,
-            total_relations: 0,
-            file_count: 0,
-            last_indexed_at: null,
-        };
-    }
-}
-/** Query node counts grouped by kind. */
-function queryNodeKindCounts(db, projectId) {
-    try {
-        return typedAll(db, `SELECT kind, COUNT(*) as count
-       FROM nexus_nodes
-       WHERE project_id = ?
-         AND kind NOT IN ('file', 'folder', 'community', 'process')
-       GROUP BY kind
-       ORDER BY count DESC
-       LIMIT 10`, projectId);
-    }
-    catch {
-        return [];
-    }
-}
-/** Query relation counts grouped by type. */
-function queryRelationTypeCounts(db, projectId) {
-    try {
-        return typedAll(db, `SELECT type, COUNT(*) as count
-       FROM nexus_relations
-       WHERE project_id = ?
-         AND type NOT IN ('member_of', 'step_in_process', 'entry_point_of')
-       GROUP BY type
-       ORDER BY count DESC
-       LIMIT 8`, projectId);
-    }
-    catch {
-        return [];
-    }
-}
-/** Query top entry points by outgoing CALLS edge count. */
-function queryTopEntryPoints(db, projectId, limit = 5) {
-    try {
-        return typedAll(db, `SELECT n.name, n.file_path, COUNT(*) as callees, n.is_exported
-       FROM nexus_relations r
-       JOIN nexus_nodes n ON r.source_id = n.id
-       WHERE r.type = 'calls'
-         AND r.project_id = ?
-         AND n.kind IN ('function', 'method', 'constructor')
-       GROUP BY r.source_id
-       ORDER BY callees DESC
-       LIMIT ?`, projectId, limit);
-    }
-    catch {
-        return [];
-    }
-}
-/** Query community nodes ordered by member count. */
-function queryCommunities(db, projectId, limit = 6) {
-    try {
-        return typedAll(db, `SELECT id, label, meta_json, indexed_at
-       FROM nexus_nodes
-       WHERE project_id = ?
-         AND kind = 'community'
-       ORDER BY indexed_at DESC
-       LIMIT ?`, projectId, limit);
-    }
-    catch {
-        return [];
-    }
-}
-/** Query count of execution flow (process) nodes. */
-function queryProcessCount(db, projectId) {
-    try {
-        const row = typedGet(db, `SELECT COUNT(*) as count
-       FROM nexus_nodes
-       WHERE project_id = ?
-         AND kind = 'process'`, projectId);
-        return row?.count ?? 0;
-    }
-    catch {
-        return 0;
-    }
-}
-// ============================================================================
-// Content generation
-// ============================================================================
-/**
- * Generate nexus bridge markdown content from nexus.db.
- * Returns the full markdown string (does not write to disk).
- *
- * @param projectId - Project registry ID used to scope nexus.db queries
- * @param repoPath - Absolute path to the repository root (used for display)
- * @returns Markdown string summarizing the code intelligence index
- */
-export async function generateNexusBridgeContent(projectId, repoPath) {
-    const { getNexusDb, getNexusNativeDb } = await import('../store/nexus-sqlite.js');
-    // Ensure DB is initialized
-    await getNexusDb();
-    const nativeDb = getNexusNativeDb();
-    if (!nativeDb) {
-        return buildEmptyBridge(repoPath);
-    }
-    // Check whether this project has been indexed at all
-    const meta = queryIndexMeta(nativeDb, projectId);
-    if (meta.total_nodes === 0) {
-        return buildEmptyBridge(repoPath);
-    }
-    const lines = [
-        '# CLEO Nexus Bridge — Code Intelligence',
-        '',
-        `> Auto-generated from nexus index. Regenerate with \`cleo nexus analyze\`.`,
-        `> Project: ${repoPath}`,
-        '',
-    ];
-    // --- Index Status ---
-    const kindCounts = queryNodeKindCounts(nativeDb, projectId);
-    const relCounts = queryRelationTypeCounts(nativeDb, projectId);
-    const processCount = queryProcessCount(nativeDb, projectId);
-    const communities = queryCommunities(nativeDb, projectId);
-    const symbolBreakdown = kindCounts.map((r) => `${r.kind}s: ${r.count}`).join(', ');
-    const callsCount = relCounts.find((r) => r.type === 'calls')?.count ?? 0;
-    const importsCount = relCounts.find((r) => r.type === 'imports')?.count ?? 0;
-    const extendsCount = relCounts.find((r) => r.type === 'extends')?.count ?? 0;
-    const freshnessLabel = meta.last_indexed_at ? meta.last_indexed_at.slice(0, 10) : 'unknown';
-    lines.push('## Index Status');
-    lines.push('');
-    lines.push(`- **Files**: ${meta.file_count.toLocaleString()} indexed`);
-    lines.push(`- **Symbols**: ${meta.total_nodes.toLocaleString()} total${symbolBreakdown ? ` (${symbolBreakdown})` : ''}`);
-    lines.push(`- **Relations**: ${meta.total_relations.toLocaleString()} total (calls: ${callsCount.toLocaleString()}, imports: ${importsCount.toLocaleString()}, extends: ${extendsCount.toLocaleString()})`);
-    lines.push(`- **Communities**: ${communities.length} functional clusters`);
-    lines.push(`- **Execution Flows**: ${processCount} traced processes`);
-    lines.push(`- **Last Indexed**: ${meta.last_indexed_at ?? 'never'}`);
-    lines.push(`- **Date**: ${freshnessLabel}`);
-    lines.push('');
-    // --- Top Entry Points ---
-    const entryPoints = queryTopEntryPoints(nativeDb, projectId);
-    if (entryPoints.length > 0) {
-        lines.push('## Top Entry Points');
-        lines.push('');
-        entryPoints.forEach((ep, i) => {
-            const name = ep.name ?? '(unknown)';
-            const filePath = ep.file_path ?? '';
-            const displayPath = filePath.length > 60 ? `...${filePath.slice(-57)}` : filePath;
-            lines.push(`${i + 1}. \`${name}\` — ${displayPath} (${ep.callees} callees)`);
-        });
-        lines.push('');
-    }
-    // --- Functional Clusters ---
-    if (communities.length > 0) {
-        lines.push('## Functional Clusters');
-        lines.push('');
-        communities.forEach((c, i) => {
-            let symbolCount = 0;
-            let topFolder = '';
-            try {
-                if (c.meta_json) {
-                    const meta = JSON.parse(c.meta_json);
-                    symbolCount = typeof meta['symbolCount'] === 'number' ? meta['symbolCount'] : 0;
-                    const folders = meta['topFolders'];
-                    if (Array.isArray(folders) && folders.length > 0) {
-                        topFolder = String(folders[0]);
-                    }
-                }
-            }
-            catch {
-                // ignore parse errors
-            }
-            const symbolsLabel = symbolCount > 0 ? ` (${symbolCount} symbols)` : '';
-            const folderLabel = topFolder ? ` — ${topFolder}` : '';
-            lines.push(`${i + 1}. **${c.label}**${symbolsLabel}${folderLabel}`);
-        });
-        lines.push('');
-    }
-    // --- Code Intelligence Commands ---
-    lines.push('## Code Intelligence Commands');
-    lines.push('');
-    lines.push('| Need | Command |');
-    lines.push('|------|---------|');
-    lines.push('| What calls this function? | `cleo nexus context <symbol>` |');
-    lines.push('| What breaks if I change this? | `cleo nexus impact <symbol>` |');
-    lines.push('| What functional areas exist? | `cleo nexus clusters` |');
-    lines.push('| What execution flows exist? | `cleo nexus flows` |');
-    lines.push('| Re-index after code changes | `cleo nexus analyze` |');
-    lines.push('| Index freshness check | `cleo nexus status` |');
-    lines.push('');
-    return lines.join('\n');
-}
-/**
- * Write nexus bridge content to .cleo/nexus-bridge.md.
- *
- * @param projectRoot - Absolute path to the project root
- * @param projectId - Project registry ID (used to scope nexus.db queries)
- * @returns Result with path and whether the file was written
- */
-export async function writeNexusBridge(projectRoot, projectId) {
-    const cleoDir = join(projectRoot, '.cleo');
-    const bridgePath = join(cleoDir, 'nexus-bridge.md');
-    // Derive project ID from path if not provided (matches nexus analyze convention)
-    const resolvedProjectId = projectId ?? Buffer.from(projectRoot).toString('base64url').slice(0, 32);
-    try {
-        const content = await generateNexusBridgeContent(resolvedProjectId, projectRoot);
-        if (!existsSync(cleoDir)) {
-            mkdirSync(cleoDir, { recursive: true });
-        }
-        // Only write if content changed (avoid unnecessary git noise)
-        if (existsSync(bridgePath)) {
-            const existing = readFileSync(bridgePath, 'utf-8');
-            // Compare without the date line since it changes daily
-            const stripDate = (s) => s.replace(/^> Date: .*/m, '');
-            if (stripDate(existing) === stripDate(content)) {
-                return { path: bridgePath, written: false };
-            }
-        }
-        writeFileSync(bridgePath, content, 'utf-8');
-        return { path: bridgePath, written: true };
-    }
-    catch (err) {
-        console.error('[CLEO] Failed to write nexus bridge:', err instanceof Error ? err.message : String(err));
-        return { path: bridgePath, written: false };
-    }
-}
-/**
- * Best-effort nexus bridge refresh. Never throws.
- * Called after cleo nexus analyze completes.
- *
- * @param projectRoot - Absolute path to the project root
- * @param projectId - Project registry ID (used to scope nexus.db queries)
- */
-export async function refreshNexusBridge(projectRoot, projectId) {
-    try {
-        await writeNexusBridge(projectRoot, projectId);
-    }
-    catch (err) {
-        console.error('[CLEO] Nexus bridge refresh failed:', err instanceof Error ? err.message : String(err));
-    }
-}
-// ============================================================================
-// Helpers
-// ============================================================================
-/** Build placeholder content when no index data exists. */
-function buildEmptyBridge(repoPath) {
-    return [
-        '# CLEO Nexus Bridge — Code Intelligence',
-        '',
-        `> Auto-generated from nexus index. Regenerate with \`cleo nexus analyze\`.`,
-        `> Project: ${repoPath}`,
-        '',
-        '## Index Status',
-        '',
-        'Not indexed. Run `cleo nexus analyze` to build the code intelligence index.',
-        '',
-        '## Code Intelligence Commands',
-        '',
-        '| Need | Command |',
-        '|------|---------|',
-        '| Build the index | `cleo nexus analyze` |',
-        '| Check index status | `cleo nexus status` |',
-        '| What calls this function? | `cleo nexus context <symbol>` |',
-        '| What breaks if I change this? | `cleo nexus impact <symbol>` |',
-        '| What functional areas exist? | `cleo nexus clusters` |',
-        '| What execution flows exist? | `cleo nexus flows` |',
-        '',
-    ].join('\n');
-}
-//# sourceMappingURL=nexus-bridge.js.map

package/dist/nexus/nexus-bridge.js.map

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package/dist/nexus/permissions.js

@@ -1,105 +0,0 @@
-/**
- * NEXUS permission enforcement - three-tier access control for cross-project operations.
- *
- * Permission model:
- *   read (1)    - Query tasks, discover relationships
- *   write (2)   - read + modify task fields, add relationships
- *   execute (3) - write + create/delete tasks, run commands
- *
- * Hierarchical: execute includes write includes read.
- * Same-project operations always have full permissions.
- *
- * @task T4574
- * @epic T4540
- */
-import { ExitCode } from '@cleocode/contracts';
-import { CleoError } from '../errors.js';
-import { nexusGetProject, nexusSetPermission } from './registry.js';
-// ── Constants ────────────────────────────────────────────────────────
-const PERMISSION_LEVELS = {
-    read: 1,
-    write: 2,
-    execute: 3,
-};
-// ── Functions ────────────────────────────────────────────────────────
-/**
- * Convert a permission string to its numeric level.
- * Returns 0 for invalid/unknown permissions.
- */
-export function permissionLevel(permission) {
-    return PERMISSION_LEVELS[permission] ?? 0;
-}
-/**
- * Get the permission level for a registered project.
- * Returns 'read' as default if the project has no explicit permission.
- */
-export async function getPermission(nameOrHash) {
-    const project = await nexusGetProject(nameOrHash);
-    if (!project)
-        return 'read';
-    return project.permissions ?? 'read';
-}
-/**
- * Check if a project has sufficient permissions (non-throwing).
- * Uses hierarchical comparison: execute >= write >= read.
- *
- * @returns true if the granted permission meets or exceeds the required level.
- */
-export async function checkPermission(nameOrHash, required) {
-    // Test bypass
-    if (process.env['NEXUS_SKIP_PERMISSION_CHECK'] === 'true') {
-        return true;
-    }
-    const granted = await getPermission(nameOrHash);
-    return permissionLevel(granted) >= permissionLevel(required);
-}
-/**
- * Require a permission level or throw CleoError.
- * Used as a guard at the start of cross-project operations.
- */
-export async function requirePermission(nameOrHash, required, operationName = 'operation') {
-    // Test bypass
-    if (process.env['NEXUS_SKIP_PERMISSION_CHECK'] === 'true') {
-        return;
-    }
-    const granted = await getPermission(nameOrHash);
-    if (permissionLevel(granted) < permissionLevel(required)) {
-        throw new CleoError(ExitCode.NEXUS_PERMISSION_DENIED, `Permission denied: '${required}' required for '${operationName}' on project '${nameOrHash}' (granted: ${granted})`);
-    }
-}
-/**
- * Full permission check returning a structured result.
- */
-export async function checkPermissionDetail(nameOrHash, required) {
-    const granted = await getPermission(nameOrHash);
-    return {
-        project: nameOrHash,
-        required,
-        granted,
-        allowed: permissionLevel(granted) >= permissionLevel(required),
-    };
-}
-/**
- * Set the permission level for a project.
- * Validates the permission value and updates the registry.
- * @task T4574
- */
-export async function setPermission(nameOrHash, permission) {
-    if (!nameOrHash) {
-        throw new CleoError(ExitCode.INVALID_INPUT, 'Project name or hash required');
-    }
-    await nexusSetPermission(nameOrHash, permission);
-}
-/** Convenience: check read access. */
-export async function canRead(nameOrHash) {
-    return checkPermission(nameOrHash, 'read');
-}
-/** Convenience: check write access. */
-export async function canWrite(nameOrHash) {
-    return checkPermission(nameOrHash, 'write');
-}
-/** Convenience: check execute access. */
-export async function canExecute(nameOrHash) {
-    return checkPermission(nameOrHash, 'execute');
-}
-//# sourceMappingURL=permissions.js.map

package/dist/nexus/permissions.js.map

@@ -1 +0,0 @@
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package/dist/nexus/query.js

@@ -1,175 +0,0 @@
-/**
- * NEXUS query parser and resolver - cross-project task references.
- *
- * Supports the `project:taskId` syntax:
- *   - `my-app:T001`  - Named project
- *   - `.:T001`       - Current project
- *   - `*:T001`       - Wildcard (all projects)
- *   - `T001`         - Implicit current project
- *
- * @task T4574
- * @epic T4540
- */
-import { existsSync, readFileSync } from 'node:fs';
-import { basename, join } from 'node:path';
-import { ExitCode } from '@cleocode/contracts';
-import { CleoError } from '../errors.js';
-import { getAccessor } from '../store/data-accessor.js';
-import { nexusGetProject, readRegistry } from './registry.js';
-// ── Query syntax ─────────────────────────────────────────────────────
-/** Regex for a bare task ID (T followed by 3+ digits). */
-const TASK_ID_RE = /^T\d{3,}$/;
-/** Regex for project:taskId syntax. */
-const QUALIFIED_RE = /^([a-z0-9_-]+|\.|\*):T\d{3,}$/;
-/**
- * Validate a query string matches expected syntax.
- */
-export function validateSyntax(query) {
-    if (!query)
-        return false;
-    return TASK_ID_RE.test(query) || QUALIFIED_RE.test(query);
-}
-/**
- * Parse a query string into its components.
- * @throws CleoError with NEXUS_INVALID_SYNTAX for bad format.
- */
-export function parseQuery(query, currentProject) {
-    if (!validateSyntax(query)) {
-        throw new CleoError(ExitCode.NEXUS_INVALID_SYNTAX, `Invalid query syntax: ${query}. Expected: T001, project:T001, .:T001, or *:T001`);
-    }
-    // Check for colon separator
-    const colonIdx = query.indexOf(':');
-    if (colonIdx === -1) {
-        // Bare task ID -- implicit current project
-        const project = currentProject ?? getCurrentProject();
-        return { project, taskId: query, wildcard: false };
-    }
-    const prefix = query.substring(0, colonIdx);
-    const taskId = query.substring(colonIdx + 1);
-    switch (prefix) {
-        case '.': {
-            const project = currentProject ?? getCurrentProject();
-            return { project, taskId, wildcard: false };
-        }
-        case '*':
-            return { project: '*', taskId, wildcard: true };
-        default:
-            return { project: prefix, taskId, wildcard: false };
-    }
-}
-/**
- * Get the current project name from context.
- * Reads .cleo/project-info.json or falls back to directory name.
- */
-export function getCurrentProject() {
-    // Allow test/env override
-    if (process.env['NEXUS_CURRENT_PROJECT']) {
-        return process.env['NEXUS_CURRENT_PROJECT'];
-    }
-    // Try to read from .cleo/project-info.json (matches bash behavior)
-    try {
-        const infoPath = join(process.cwd(), '.cleo', 'project-info.json');
-        if (existsSync(infoPath)) {
-            const data = JSON.parse(readFileSync(infoPath, 'utf-8'));
-            if (typeof data.name === 'string' && data.name.length > 0) {
-                return data.name;
-            }
-        }
-    }
-    catch {
-        // Fall through to directory name
-    }
-    // Fallback to cwd directory name
-    return basename(process.cwd());
-}
-/**
- * Resolve a project name to its filesystem path.
- * Handles special cases: "." (current), "*" (wildcard marker).
- */
-export async function resolveProjectPath(projectName) {
-    if (projectName === '*') {
-        return 'WILDCARD';
-    }
-    if (projectName === '.') {
-        try {
-            const accessor = await getAccessor(process.cwd());
-            const count = await accessor.countTasks();
-            if (count >= 0)
-                return process.cwd();
-            throw new Error('No task data');
-        }
-        catch {
-            throw new CleoError(ExitCode.NEXUS_PROJECT_NOT_FOUND, 'Current directory is not a CLEO project');
-        }
-    }
-    // Look up in registry
-    const project = await nexusGetProject(projectName);
-    if (!project) {
-        throw new CleoError(ExitCode.NEXUS_PROJECT_NOT_FOUND, `Project not found in registry: ${projectName}`, { fix: `cleo nexus register /path/to/project --name ${projectName}` });
-    }
-    return project.path;
-}
-/**
- * Read tasks from a project's task database.
- */
-async function readProjectTasks(projectPath) {
-    const tasksDbPath = join(projectPath, '.cleo', 'tasks.db');
-    try {
-        const accessor = await getAccessor(projectPath);
-        const { tasks } = await accessor.queryTasks({});
-        return tasks;
-    }
-    catch {
-        throw new CleoError(ExitCode.NOT_FOUND, `Project task data not found: ${tasksDbPath}`);
-    }
-}
-/**
- * Resolve a query to task data.
- * For wildcard queries, returns an array of matches from all projects.
- * For named projects, returns a single task with project context.
- */
-export async function resolveTask(query, currentProject) {
-    const parsed = parseQuery(query, currentProject);
-    if (parsed.wildcard) {
-        return resolveWildcard(parsed.taskId);
-    }
-    // Resolve project path
-    const projectPath = await resolveProjectPath(parsed.project);
-    const tasks = await readProjectTasks(projectPath);
-    const task = tasks.find((t) => t.id === parsed.taskId);
-    if (!task) {
-        throw new CleoError(ExitCode.NOT_FOUND, `Task not found: ${parsed.taskId} in project ${parsed.project}`);
-    }
-    return { ...task, _project: parsed.project };
-}
-/**
- * Search for a task ID across all registered projects.
- */
-async function resolveWildcard(taskId) {
-    const registry = await readRegistry();
-    if (!registry)
-        return [];
-    const results = [];
-    for (const project of Object.values(registry.projects)) {
-        try {
-            const tasks = await readProjectTasks(project.path);
-            const match = tasks.find((t) => t.id === taskId);
-            if (match) {
-                results.push({ ...match, _project: project.name });
-            }
-        }
-        catch {
-            // Skip projects with unreadable task data
-        }
-    }
-    return results;
-}
-/**
- * Extract the project name from a query without full resolution.
- * Useful for permission checks before task lookup.
- */
-export function getProjectFromQuery(query, currentProject) {
-    const parsed = parseQuery(query, currentProject);
-    return parsed.project;
-}
-//# sourceMappingURL=query.js.map

package/dist/nexus/query.js.map

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