@cleocode/core 2026.3.58 → 2026.3.59

package/dist/store/import-sort.js

@@ -1,121 +0,0 @@
-/**
- * Topological sort for import order using Kahn's algorithm.
- * Ported from lib/data/import-sort.sh
- *
- * Ensures tasks are imported in dependency order where:
- * 1. Parents are imported before children (parentId references)
- * 2. Dependencies are imported before dependents (depends[] references)
- *
- * @task T4552
- * @epic T4545
- */
-import { ExitCode } from '@cleocode/contracts';
-import { CleoError } from '../errors.js';
-/**
- * Topological sort for task import order using Kahn's algorithm.
- *
- * Ensures tasks are imported in dependency order:
- * - Parents before children (parentId references)
- * - Dependencies before dependents (depends[] references)
- * - Only counts edges to tasks within the set (external deps ignored)
- *
- * @task T4552
- */
-export function topologicalSortTasks(tasks) {
-    if (tasks.length === 0)
-        return [];
-    // Build lookup from id to index
-    const idToIndex = new Map();
-    for (let i = 0; i < tasks.length; i++) {
-        idToIndex.set(tasks[i].id, i);
-    }
-    // Initialize graph nodes
-    const nodes = tasks.map((task) => {
-        // Count in-degree: edges from parentId + depends that are within the set
-        let inDegree = 0;
-        if (task.parentId && idToIndex.has(task.parentId)) {
-            inDegree++;
-        }
-        const deps = task.depends ?? [];
-        for (const dep of deps) {
-            if (idToIndex.has(dep)) {
-                inDegree++;
-            }
-        }
-        return {
-            id: task.id,
-            inDegree,
-            children: [],
-            dependents: [],
-        };
-    });
-    // Build reverse edges (parent -> children, dep -> dependents)
-    for (const task of tasks) {
-        // Add to parent's children list
-        if (task.parentId) {
-            const parentIdx = idToIndex.get(task.parentId);
-            if (parentIdx !== undefined) {
-                nodes[parentIdx].children.push(task.id);
-            }
-        }
-        // Add to each dep's dependents list
-        const deps = task.depends ?? [];
-        for (const dep of deps) {
-            const depIdx = idToIndex.get(dep);
-            if (depIdx !== undefined) {
-                nodes[depIdx].dependents.push(task.id);
-            }
-        }
-    }
-    // Build node lookup by ID for efficient access
-    const nodeById = new Map();
-    for (const node of nodes) {
-        nodeById.set(node.id, node);
-    }
-    // Kahn's algorithm: initialize queue with zero in-degree nodes
-    const queue = [];
-    for (const node of nodes) {
-        if (node.inDegree === 0) {
-            queue.push(node.id);
-        }
-    }
-    const result = [];
-    while (queue.length > 0) {
-        const current = queue.shift();
-        result.push(current);
-        const currentNode = nodeById.get(current);
-        // Process all successors (children + dependents)
-        const successors = [...currentNode.children, ...currentNode.dependents];
-        for (const successorId of successors) {
-            const successor = nodeById.get(successorId);
-            if (!successor)
-                continue;
-            successor.inDegree--;
-            if (successor.inDegree === 0) {
-                queue.push(successorId);
-            }
-        }
-    }
-    // Cycle detection
-    if (result.length !== tasks.length) {
-        const processed = new Set(result);
-        const unprocessed = tasks.map((t) => t.id).filter((id) => !processed.has(id));
-        throw new CleoError(ExitCode.VALIDATION_ERROR, `Cycle detected in task dependencies. Tasks in cycle: ${unprocessed.join(', ')}`);
-    }
-    return result;
-}
-/**
- * Detect cycles in task dependency graph.
- * Returns true if no cycles, false if cycles detected.
- * @task T4552
- */
-export function detectCycles(tasks) {
-    try {
-        topologicalSortTasks(tasks);
-        return true; // No cycles
-    }
-    catch {
-        return false; // Cycles detected
-    }
-}
-//# sourceMappingURL=import-sort.js.map

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package/dist/store/index.js

@@ -1,28 +0,0 @@
-/**
- * Unified store interface for CLEO V2 data access.
- * @epic T4454
- * @task T4457
- * @task T4645
- * @task T4745
- */
-export { atomicWrite, atomicWriteJson, safeReadFile } from './atomic.js';
-export { createBackup, listBackups, restoreFromBackup } from './backup.js';
-export { forceCheckpointBeforeOperation } from './data-safety.js';
-export { DataSafetyError, disableSafety, enableSafety, forceSafetyCheckpoint, getSafetyStats, resetSafetyStats, runDataIntegrityCheck, } from './data-safety-central.js';
-export { appendJsonl, computeChecksum, readJson, readJsonRequired, saveJson, } from './json.js';
-export { acquireLock, isLocked, withLock } from './lock.js';
-export { createStoreProvider } from './provider.js';
-// Safety-enabled DataAccessor exports (@task T4745)
-export { getSafetyStatus, isSafetyEnabled, SafetyDataAccessor, wrapWithSafety, } from './safety-data-accessor.js';
-/**
- * Get a StoreProvider instance for the given working directory.
- * Convenience wrapper around createStoreProvider with auto-detection.
- *
- * @task T4645
- * @epic T4638
- */
-export async function getStore(cwd) {
-    const { createStoreProvider: create } = await import('./provider.js');
-    return create(undefined, cwd);
-}
-//# sourceMappingURL=index.js.map

package/dist/store/index.js.map

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package/dist/store/json.js

@@ -1,208 +0,0 @@
-/**
- * JSON read/write with schema validation, locking, and backup.
- * This is the primary data access layer for CLEO data files.
- * @epic T4454
- * @task T4457
- */
-import { createHash } from 'node:crypto';
-import { ExitCode } from '@cleocode/contracts';
-import { CleoError } from '../errors.js';
-import { atomicWrite, atomicWriteJson, safeReadFile } from './atomic.js';
-import { createBackup } from './backup.js';
-import { withLock } from './lock.js';
-/**
- * Read and parse a JSON file.
- * Returns null if the file does not exist.
- */
-export async function readJson(filePath) {
-    const content = await safeReadFile(filePath);
-    if (content === null)
-        return null;
-    try {
-        return JSON.parse(content);
-    }
-    catch (err) {
-        throw new CleoError(ExitCode.VALIDATION_ERROR, `Invalid JSON in: ${filePath}`, { cause: err });
-    }
-}
-/**
- * Read a JSON file, throwing if it doesn't exist.
- */
-export async function readJsonRequired(filePath) {
-    const data = await readJson(filePath);
-    if (data === null) {
-        throw new CleoError(ExitCode.NOT_FOUND, `Required file not found: ${filePath}`);
-    }
-    return data;
-}
-/**
- * Compute a truncated SHA-256 checksum of a value.
- * Used for integrity verification (matches Bash CLI's 16-char hex format).
- */
-export function computeChecksum(data) {
-    const json = JSON.stringify(data);
-    const hash = createHash('sha256').update(json).digest('hex');
-    return hash.substring(0, 16);
-}
-/**
- * Save JSON data with optional locking, backup, and validation.
- * Follows the CLEO atomic write pattern:
- *   1. Acquire lock
- *   2. Validate data
- *   3. Create backup of existing file
- *   4. Atomic write (temp file -> rename)
- *   5. Release lock
- */
-export async function saveJson(filePath, data, options) {
-    await withLock(filePath, async () => {
-        // Validate before write
-        if (options?.validate) {
-            try {
-                await options.validate(data);
-            }
-            catch (err) {
-                throw new CleoError(ExitCode.VALIDATION_ERROR, `Validation failed before write: ${filePath}`, { cause: err });
-            }
-        }
-        // Create backup if configured
-        if (options?.backupDir) {
-            try {
-                await createBackup(filePath, options.backupDir, options.maxBackups);
-            }
-            catch {
-                // Backup failure is non-fatal for first write (file may not exist yet)
-            }
-        }
-        // Atomic write
-        await atomicWriteJson(filePath, data, { indent: options?.indent });
-        // Dispatch onFileChange hook (best-effort, fire-and-forget)
-        import('../hooks/registry.js')
-            .then(({ hooks: h }) => h.dispatch('onFileChange', process.cwd(), {
-            timestamp: new Date().toISOString(),
-            filePath,
-            changeType: 'write',
-        }))
-            .catch(() => {
-            /* hook errors are non-fatal */
-        });
-    });
-}
-/**
- * Append a line to a JSONL file atomically.
- * Used for manifest entries and audit logs.
- */
-export async function appendJsonl(filePath, entry) {
-    const existing = await safeReadFile(filePath);
-    const line = JSON.stringify(entry);
-    const content = existing ? existing.trimEnd() + '\n' + line + '\n' : line + '\n';
-    await atomicWrite(filePath, content);
-}
-/**
- * Read log entries from a hybrid JSON/JSONL file.
- * Handles three formats:
- *   1. Pure JSON: `{ "entries": [...] }` (legacy bash format)
- *   2. Pure JSONL: one JSON object per line (new TS format)
- *   3. Hybrid: JSON object followed by JSONL lines (migration state)
- * Returns a flat array of all entries found.
- * @task T4622
- */
-export async function readLogEntries(filePath) {
-    const content = await safeReadFile(filePath);
-    if (content === null)
-        return [];
-    const trimmed = content.trim();
-    if (!trimmed)
-        return [];
-    // Fast path: try parsing as a single JSON object
-    try {
-        const parsed = JSON.parse(trimmed);
-        if (Array.isArray(parsed))
-            return parsed;
-        if (parsed && typeof parsed === 'object' && Array.isArray(parsed.entries)) {
-            return parsed.entries;
-        }
-        // Single object, wrap in array
-        return [parsed];
-    }
-    catch {
-        // Not valid JSON - handle hybrid format
-    }
-    // Hybrid format: find where the initial JSON object ends, then parse JSONL after it
-    const entries = [];
-    if (trimmed.startsWith('{')) {
-        // Find the matching closing brace for the initial JSON object
-        let depth = 0;
-        let inString = false;
-        let escaped = false;
-        let jsonEnd = -1;
-        for (let i = 0; i < trimmed.length; i++) {
-            const ch = trimmed[i];
-            if (escaped) {
-                escaped = false;
-                continue;
-            }
-            if (ch === '\\' && inString) {
-                escaped = true;
-                continue;
-            }
-            if (ch === '"') {
-                inString = !inString;
-                continue;
-            }
-            if (inString)
-                continue;
-            if (ch === '{')
-                depth++;
-            else if (ch === '}') {
-                depth--;
-                if (depth === 0) {
-                    jsonEnd = i + 1;
-                    break;
-                }
-            }
-        }
-        if (jsonEnd > 0) {
-            // Parse the initial JSON object
-            try {
-                const initialJson = JSON.parse(trimmed.substring(0, jsonEnd));
-                if (initialJson && Array.isArray(initialJson.entries)) {
-                    entries.push(...initialJson.entries);
-                }
-            }
-            catch {
-                // Corrupted initial JSON - skip it
-            }
-            // Parse remaining lines as JSONL
-            const remainder = trimmed.substring(jsonEnd).trim();
-            if (remainder) {
-                for (const line of remainder.split('\n')) {
-                    const l = line.trim();
-                    if (!l || !l.startsWith('{'))
-                        continue;
-                    try {
-                        entries.push(JSON.parse(l));
-                    }
-                    catch {
-                        // Skip unparseable lines
-                    }
-                }
-            }
-        }
-    }
-    else {
-        // Pure JSONL (no initial JSON object)
-        for (const line of trimmed.split('\n')) {
-            const l = line.trim();
-            if (!l || !l.startsWith('{'))
-                continue;
-            try {
-                entries.push(JSON.parse(l));
-            }
-            catch {
-                // Skip unparseable lines
-            }
-        }
-    }
-    return entries;
-}
-//# sourceMappingURL=json.js.map

package/dist/store/json.js.map

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package/dist/store/lifecycle-store.js

@@ -1,249 +0,0 @@
-/**
- * SQLite-backed lifecycle store operations.
- *
- * Query and mutation functions for lifecycle pipeline tables:
- * lifecycle_pipelines, lifecycle_stages, lifecycle_gate_results,
- * lifecycle_evidence, lifecycle_transitions.
- *
- * Used by src/core/lifecycle/resume.ts to avoid direct store-layer imports.
- *
- * @task T4832
- * @epic T4454
- */
-import { and, asc, desc, eq, inArray, sql } from 'drizzle-orm';
-import { getDb } from './sqlite.js';
-import * as schema from './tasks-schema.js';
-// =============================================================================
-// PIPELINE QUERIES
-// =============================================================================
-/**
- * Find active pipelines joined with their stages and tasks.
- * Optionally filters by specific task IDs.
- *
- * @param taskIds - Optional list of task IDs to filter by
- * @param cwd - Working directory for database
- * @returns Rows with pipeline, stage, and task data
- */
-export async function findActivePipelinesWithStagesAndTasks(taskIds, cwd) {
-    const db = await getDb(cwd);
-    const conditions = [eq(schema.lifecyclePipelines.status, 'active')];
-    if (taskIds && taskIds.length > 0) {
-        conditions.push(inArray(schema.lifecyclePipelines.taskId, taskIds));
-    }
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stage: schema.lifecycleStages,
-        task: schema.tasks,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id))
-        .innerJoin(schema.tasks, eq(schema.tasks.id, schema.lifecyclePipelines.taskId))
-        .where(and(...conditions))
-        .orderBy(asc(schema.tasks.priority), desc(schema.lifecyclePipelines.startedAt))
-        .all();
-}
-/**
- * Find a pipeline with its current stage and task by taskId.
- * Matches stages where stageName equals the pipeline's currentStageId.
- *
- * @param taskId - Task ID to look up
- * @param cwd - Working directory for database
- * @returns Matching rows (typically 0 or 1)
- */
-export async function findPipelineWithCurrentStageAndTask(taskId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stage: schema.lifecycleStages,
-        task: schema.tasks,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id))
-        .innerJoin(schema.tasks, eq(schema.tasks.id, schema.lifecyclePipelines.taskId))
-        .where(and(eq(schema.lifecyclePipelines.taskId, taskId), eq(schema.lifecycleStages.stageName, sql `${schema.lifecyclePipelines.currentStageId}`)))
-        .limit(1)
-        .all();
-}
-/**
- * Find a pipeline and a specific stage by taskId and stageName.
- *
- * @param taskId - Task ID
- * @param stageName - Stage name to match
- * @param cwd - Working directory for database
- * @returns Matching rows (typically 0 or 1)
- */
-export async function findPipelineWithStage(taskId, stageName, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stageRecord: schema.lifecycleStages,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, and(eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id), eq(schema.lifecycleStages.stageName, stageName)))
-        .where(eq(schema.lifecyclePipelines.taskId, taskId))
-        .limit(1)
-        .all();
-}
-/**
- * Update pipeline's currentStageId.
- *
- * @param pipelineId - Pipeline ID to update
- * @param currentStageId - New current stage identifier
- * @param cwd - Working directory for database
- */
-export async function updatePipelineCurrentStage(pipelineId, currentStageId, cwd) {
-    const db = await getDb(cwd);
-    await db
-        .update(schema.lifecyclePipelines)
-        .set({ currentStageId })
-        .where(eq(schema.lifecyclePipelines.id, pipelineId))
-        .run();
-}
-// =============================================================================
-// STAGE QUERIES
-// =============================================================================
-/**
- * Get all stages for a pipeline, ordered by sequence.
- *
- * @param pipelineId - Pipeline ID
- * @param cwd - Working directory for database
- * @returns All stage rows for the pipeline
- */
-export async function getStagesByPipelineId(pipelineId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleStages)
-        .where(eq(schema.lifecycleStages.pipelineId, pipelineId))
-        .orderBy(asc(schema.lifecycleStages.sequence))
-        .all();
-}
-/**
- * Update a stage's status to 'in_progress' and clear block fields.
- *
- * @param stageId - Stage ID to update
- * @param startedAt - ISO timestamp for when the stage started
- * @param cwd - Working directory for database
- */
-export async function activateStage(stageId, startedAt, cwd) {
-    const db = await getDb(cwd);
-    await db
-        .update(schema.lifecycleStages)
-        .set({
-        status: 'in_progress',
-        startedAt,
-        blockedAt: null,
-        blockReason: null,
-    })
-        .where(eq(schema.lifecycleStages.id, stageId))
-        .run();
-}
-/**
- * Find pipeline with current stage (no task join) by taskId.
- * Used by checkBlockedStageDetails.
- *
- * @param taskId - Task ID
- * @param cwd - Working directory for database
- * @returns Matching rows
- */
-export async function findPipelineWithCurrentStage(taskId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select({
-        pipeline: schema.lifecyclePipelines,
-        stageRecord: schema.lifecycleStages,
-    })
-        .from(schema.lifecyclePipelines)
-        .innerJoin(schema.lifecycleStages, eq(schema.lifecycleStages.pipelineId, schema.lifecyclePipelines.id))
-        .where(and(eq(schema.lifecyclePipelines.taskId, taskId), eq(schema.lifecycleStages.stageName, sql `${schema.lifecyclePipelines.currentStageId}`)))
-        .limit(1)
-        .all();
-}
-// =============================================================================
-// GATE RESULT QUERIES
-// =============================================================================
-/**
- * Get gate results for a stage, ordered by checkedAt descending.
- *
- * @param stageId - Stage ID
- * @param cwd - Working directory for database
- * @returns Gate result rows
- */
-export async function getGateResultsByStageId(stageId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleGateResults)
-        .where(eq(schema.lifecycleGateResults.stageId, stageId))
-        .orderBy(desc(schema.lifecycleGateResults.checkedAt))
-        .all();
-}
-/**
- * Get gate results for a stage without ordering (for simple checks).
- *
- * @param stageId - Stage ID
- * @param cwd - Working directory for database
- * @returns Gate result rows
- */
-export async function getGateResultsByStageIdUnordered(stageId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleGateResults)
-        .where(eq(schema.lifecycleGateResults.stageId, stageId))
-        .all();
-}
-// =============================================================================
-// EVIDENCE QUERIES
-// =============================================================================
-/**
- * Get evidence for a stage, ordered by recordedAt descending.
- *
- * @param stageId - Stage ID
- * @param cwd - Working directory for database
- * @returns Evidence rows
- */
-export async function getEvidenceByStageId(stageId, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleEvidence)
-        .where(eq(schema.lifecycleEvidence.stageId, stageId))
-        .orderBy(desc(schema.lifecycleEvidence.recordedAt))
-        .all();
-}
-// =============================================================================
-// TRANSITION QUERIES & MUTATIONS
-// =============================================================================
-/**
- * Get recent transitions for a pipeline, ordered by createdAt descending.
- *
- * @param pipelineId - Pipeline ID
- * @param limit - Max rows to return (default: 10)
- * @param cwd - Working directory for database
- * @returns Transition rows
- */
-export async function getRecentTransitions(pipelineId, limit = 10, cwd) {
-    const db = await getDb(cwd);
-    return db
-        .select()
-        .from(schema.lifecycleTransitions)
-        .where(eq(schema.lifecycleTransitions.pipelineId, pipelineId))
-        .orderBy(desc(schema.lifecycleTransitions.createdAt))
-        .limit(limit)
-        .all();
-}
-/**
- * Insert a new transition record.
- *
- * @param transition - Transition data to insert
- * @param cwd - Working directory for database
- */
-export async function insertTransition(transition, cwd) {
-    const db = await getDb(cwd);
-    await db.insert(schema.lifecycleTransitions).values(transition).run();
-}
-//# sourceMappingURL=lifecycle-store.js.map

package/dist/store/lifecycle-store.js.map

@@ -1 +0,0 @@
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