@cleocode/core 2026.3.37 → 2026.3.39

package/dist/migration/agent-outputs.js

@@ -1,316 +0,0 @@
-/**
- * Agent-outputs directory migration utility.
- *
- * Single source of truth for detecting, migrating, and cleaning up
- * legacy agent-output directories. Handles the full lineage:
- *
- *   1. claudedocs/research-outputs/  (oldest, pre-v0.61.0)
- *   2. claudedocs/agent-outputs/     (intermediate, pre-v0.70.0)
- *   3. .cleo/agent-outputs/          (canonical, v0.80.0+)
- *
- * NOTE: The "research-outputs" naming predates the "agent-outputs" rename
- * (T2348). Projects that still have research-outputs/ get their content
- * merged into .cleo/agent-outputs/ in a single unified pass with
- * MANIFEST.jsonl path rewriting and deduplication.
- *
- * Used by: upgrade.ts (cleo upgrade) and init.ts (cleo init).
- *
- * @task T4700
- * @epic T4454
- */
-import { copyFileSync, existsSync, mkdirSync, readdirSync, readFileSync, rmSync, statSync, writeFileSync, } from 'node:fs';
-import { join } from 'node:path';
-// ── Constants ────────────────────────────────────────────────────────
-/** Canonical agent-outputs directory (relative to project root). */
-const CANONICAL_DIR = '.cleo/agent-outputs';
-/** Path rewrites applied to MANIFEST.jsonl entries during migration. */
-const MANIFEST_PATH_REWRITES = [
-    [/claudedocs\/research-outputs\//g, `${CANONICAL_DIR}/`],
-    [/claudedocs\/agent-outputs\//g, `${CANONICAL_DIR}/`],
-];
-// ── Detection ────────────────────────────────────────────────────────
-/**
- * Detect legacy agent-output directories in a project.
- *
- * Read-only check — never modifies the filesystem.
- *
- * @param projectRoot - Absolute path to project root
- * @param cleoDir - Absolute path to .cleo/ directory
- */
-export function detectLegacyAgentOutputs(projectRoot, cleoDir) {
-    const hasResearchOutputs = existsSync(join(projectRoot, 'claudedocs', 'research-outputs'));
-    const hasLegacyAgentOutputs = existsSync(join(projectRoot, 'claudedocs', 'agent-outputs'));
-    const hasCanonical = existsSync(join(cleoDir, 'agent-outputs'));
-    const legacyPaths = [];
-    if (hasResearchOutputs)
-        legacyPaths.push('claudedocs/research-outputs/');
-    if (hasLegacyAgentOutputs)
-        legacyPaths.push('claudedocs/agent-outputs/');
-    return {
-        hasLegacy: hasResearchOutputs || hasLegacyAgentOutputs,
-        hasResearchOutputs,
-        hasLegacyAgentOutputs,
-        hasCanonical,
-        legacyPaths,
-    };
-}
-// ── Migration ────────────────────────────────────────────────────────
-/**
- * Run the full agent-outputs migration.
- *
- * Copies files from all legacy locations into .cleo/agent-outputs/,
- * merges MANIFEST.jsonl entries with path rewriting and deduplication,
- * updates config.json, and removes legacy directories.
- *
- * Safe to call when no legacy directories exist (returns early).
- * Safe to call when canonical directory already exists (merges).
- *
- * @param projectRoot - Absolute path to project root
- * @param cleoDir - Absolute path to .cleo/ directory
- */
-export function migrateAgentOutputs(projectRoot, cleoDir) {
-    const detection = detectLegacyAgentOutputs(projectRoot, cleoDir);
-    if (!detection.hasLegacy) {
-        return {
-            migrated: false,
-            filesCopied: 0,
-            manifestEntries: 0,
-            removed: [],
-            summary: 'No legacy output directories found',
-        };
-    }
-    const newDir = join(cleoDir, 'agent-outputs');
-    const hadCanonical = detection.hasCanonical;
-    mkdirSync(newDir, { recursive: true });
-    let totalCopied = 0;
-    const mergedManifestLines = [];
-    const copiedFiles = new Set();
-    // ── Phase 1: Copy files from legacy dirs (oldest first) ──────────
-    const legacySources = [
-        {
-            path: join(projectRoot, 'claudedocs', 'research-outputs'),
-            exists: detection.hasResearchOutputs,
-        },
-        {
-            path: join(projectRoot, 'claudedocs', 'agent-outputs'),
-            exists: detection.hasLegacyAgentOutputs,
-        },
-    ];
-    for (const source of legacySources) {
-        if (!source.exists)
-            continue;
-        totalCopied += copyDirContents(source.path, newDir, mergedManifestLines, copiedFiles);
-    }
-    // ── Phase 2: Merge manifests ─────────────────────────────────────
-    const manifestEntries = mergeManifests(newDir, hadCanonical, mergedManifestLines);
-    // ── Phase 3: Update config ───────────────────────────────────────
-    updateConfigPaths(cleoDir);
-    // ── Phase 4: Remove legacy directories ───────────────────────────
-    const removed = removeLegacyDirs(projectRoot, detection);
-    // ── Build summary ────────────────────────────────────────────────
-    const parts = [`Migrated ${totalCopied} files → ${CANONICAL_DIR}/`];
-    if (manifestEntries > 0)
-        parts.push(`merged ${manifestEntries} manifest entries`);
-    if (removed.length > 0)
-        parts.push(`removed: ${removed.join(', ')}`);
-    return {
-        migrated: true,
-        filesCopied: totalCopied,
-        manifestEntries,
-        removed,
-        summary: parts.join('; '),
-    };
-}
-// ── Internal helpers ─────────────────────────────────────────────────
-/**
- * Recursively copy a source directory's contents into the target directory.
- *
- * - Skips MANIFEST.jsonl (collected separately for merge).
- * - Skips files already present in copiedFiles set (newer wins).
- * - Handles one level of subdirectories.
- */
-function copyDirContents(srcDir, dstDir, manifestLines, copiedFiles) {
-    let count = 0;
-    const entries = readdirSync(srcDir);
-    for (const entry of entries) {
-        if (entry === 'MANIFEST.jsonl') {
-            collectManifestLines(join(srcDir, entry), manifestLines);
-            continue;
-        }
-        const srcPath = join(srcDir, entry);
-        const dstPath = join(dstDir, entry);
-        try {
-            const st = statSync(srcPath);
-            if (st.isDirectory()) {
-                mkdirSync(dstPath, { recursive: true });
-                for (const sf of readdirSync(srcPath)) {
-                    if (!copiedFiles.has(sf)) {
-                        try {
-                            copyFileSync(join(srcPath, sf), join(dstPath, sf));
-                            copiedFiles.add(sf);
-                            count++;
-                        }
-                        catch {
-                            /* skip individual file errors */
-                        }
-                    }
-                }
-            }
-            else if (!copiedFiles.has(entry)) {
-                copyFileSync(srcPath, dstPath);
-                copiedFiles.add(entry);
-                count++;
-            }
-        }
-        catch {
-            /* skip individual file errors */
-        }
-    }
-    return count;
-}
-/**
- * Read MANIFEST.jsonl lines from a source file and rewrite paths.
- */
-function collectManifestLines(manifestPath, out) {
-    try {
-        const content = readFileSync(manifestPath, 'utf-8');
-        for (const line of content.split('\n')) {
-            if (!line.trim())
-                continue;
-            let rewritten = line;
-            for (const [pattern, replacement] of MANIFEST_PATH_REWRITES) {
-                rewritten = rewritten.replace(pattern, replacement);
-            }
-            out.push(rewritten);
-        }
-    }
-    catch {
-        /* skip unreadable manifest */
-    }
-}
-/**
- * Merge manifest entries: existing canonical entries take priority,
- * legacy entries are appended with deduplication by ID.
- *
- * @returns Total number of entries in the merged manifest.
- */
-function mergeManifests(newDir, hadCanonical, legacyLines) {
-    const manifestPath = join(newDir, 'MANIFEST.jsonl');
-    // Collect existing canonical entries
-    const existingLines = [];
-    if (hadCanonical && existsSync(manifestPath)) {
-        try {
-            const existing = readFileSync(manifestPath, 'utf-8');
-            for (const line of existing.split('\n')) {
-                if (line.trim())
-                    existingLines.push(line);
-            }
-        }
-        catch {
-            /* ignore */
-        }
-    }
-    // Deduplicate: existing IDs take priority
-    const seenIds = new Set();
-    const finalLines = [];
-    for (const line of existingLines) {
-        try {
-            const p = JSON.parse(line);
-            if (p.id)
-                seenIds.add(p.id);
-        }
-        catch {
-            /* keep */
-        }
-        finalLines.push(line);
-    }
-    for (const line of legacyLines) {
-        try {
-            const p = JSON.parse(line);
-            if (p.id && seenIds.has(p.id))
-                continue;
-            if (p.id)
-                seenIds.add(p.id);
-        }
-        catch {
-            /* keep */
-        }
-        finalLines.push(line);
-    }
-    if (finalLines.length > 0) {
-        writeFileSync(manifestPath, finalLines.join('\n') + '\n');
-    }
-    return finalLines.length;
-}
-/**
- * Update config.json to point to the canonical path and remove deprecated keys.
- */
-function updateConfigPaths(cleoDir) {
-    const configPath = join(cleoDir, 'config.json');
-    if (!existsSync(configPath))
-        return;
-    try {
-        const config = JSON.parse(readFileSync(configPath, 'utf-8'));
-        const currentDir = config.agentOutputs?.directory ?? config.agentOutputs ?? config.research?.outputDir;
-        if (currentDir && currentDir !== CANONICAL_DIR) {
-            if (typeof config.agentOutputs === 'object') {
-                config.agentOutputs.directory = CANONICAL_DIR;
-            }
-            else {
-                config.agentOutputs = { directory: CANONICAL_DIR };
-            }
-            // Remove deprecated research.outputDir
-            if (config.research?.outputDir) {
-                delete config.research.outputDir;
-                if (Object.keys(config.research).length === 0) {
-                    delete config.research;
-                }
-            }
-            writeFileSync(configPath, JSON.stringify(config, null, 2));
-        }
-    }
-    catch {
-        /* config update is best-effort */
-    }
-}
-/**
- * Remove legacy directories and clean up empty claudedocs/.
- *
- * @returns List of removed directory paths (relative).
- */
-function removeLegacyDirs(projectRoot, detection) {
-    const removed = [];
-    if (detection.hasResearchOutputs) {
-        try {
-            rmSync(join(projectRoot, 'claudedocs', 'research-outputs'), { recursive: true, force: true });
-            removed.push('claudedocs/research-outputs/');
-        }
-        catch {
-            /* best-effort */
-        }
-    }
-    if (detection.hasLegacyAgentOutputs) {
-        try {
-            rmSync(join(projectRoot, 'claudedocs', 'agent-outputs'), { recursive: true, force: true });
-            removed.push('claudedocs/agent-outputs/');
-        }
-        catch {
-            /* best-effort */
-        }
-    }
-    // Remove empty claudedocs/ parent
-    const claudedocsDir = join(projectRoot, 'claudedocs');
-    if (existsSync(claudedocsDir)) {
-        try {
-            if (readdirSync(claudedocsDir).length === 0) {
-                rmSync(claudedocsDir, { recursive: true, force: true });
-                removed.push('claudedocs/ (empty)');
-            }
-        }
-        catch {
-            /* best-effort */
-        }
-    }
-    return removed;
-}
-//# sourceMappingURL=agent-outputs.js.map

package/dist/migration/agent-outputs.js.map

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package/dist/migration/checksum.d.ts

@@ -1,55 +0,0 @@
-/**
- * Checksum utilities for backup verification.
- *
- * Provides SHA-256 checksum computation and backup verification
- * to ensure data integrity during migrations.
- *
- * @task T4728
- * @epic T4454
- */
-/**
- * Result of a backup verification operation.
- */
-export interface VerificationResult {
-    /** Whether the backup is valid */
-    valid: boolean;
-    /** Error message if verification failed */
-    error?: string;
-    /** SHA-256 checksum of the source file */
-    sourceChecksum: string;
-    /** SHA-256 checksum of the backup file */
-    backupChecksum: string;
-}
-/**
- * Compute SHA-256 checksum of a file.
- *
- * @param filePath - Path to the file
- * @returns Hex-encoded SHA-256 checksum
- * @task T4728
- */
-export declare function computeChecksum(filePath: string): Promise<string>;
-/**
- * Verify that a backup file matches the source file and is a valid SQLite database.
- *
- * Performs three checks:
- * 1. Computes SHA-256 checksum of both files
- * 2. Compares checksums to detect any content differences
- * 3. Verifies the backup can be opened as a valid SQLite database
- *
- * @param sourcePath - Path to the source database file
- * @param backupPath - Path to the backup file
- * @returns VerificationResult with checksums and validity status
- * @task T4728
- */
-export declare function verifyBackup(sourcePath: string, backupPath: string): Promise<VerificationResult>;
-/**
- * Quick checksum comparison without SQLite verification.
- * Use when you only need to compare file contents.
- *
- * @param filePath1 - First file path
- * @param filePath2 - Second file path
- * @returns true if checksums match, false otherwise
- * @task T4728
- */
-export declare function compareChecksums(filePath1: string, filePath2: string): Promise<boolean>;
-//# sourceMappingURL=checksum.d.ts.map

package/dist/migration/checksum.d.ts.map

@@ -1 +0,0 @@
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package/dist/migration/checksum.js

@@ -1,92 +0,0 @@
-/**
- * Checksum utilities for backup verification.
- *
- * Provides SHA-256 checksum computation and backup verification
- * to ensure data integrity during migrations.
- *
- * @task T4728
- * @epic T4454
- */
-import { createHash } from 'node:crypto';
-import { readFileSync } from 'node:fs';
-import { createRequire } from 'node:module';
-const _require = createRequire(import.meta.url);
-const { DatabaseSync } = _require('node:sqlite');
-/**
- * Compute SHA-256 checksum of a file.
- *
- * @param filePath - Path to the file
- * @returns Hex-encoded SHA-256 checksum
- * @task T4728
- */
-export async function computeChecksum(filePath) {
-    const content = readFileSync(filePath);
-    return createHash('sha256').update(content).digest('hex');
-}
-/**
- * Verify that a backup file matches the source file and is a valid SQLite database.
- *
- * Performs three checks:
- * 1. Computes SHA-256 checksum of both files
- * 2. Compares checksums to detect any content differences
- * 3. Verifies the backup can be opened as a valid SQLite database
- *
- * @param sourcePath - Path to the source database file
- * @param backupPath - Path to the backup file
- * @returns VerificationResult with checksums and validity status
- * @task T4728
- */
-export async function verifyBackup(sourcePath, backupPath) {
-    // Compute checksums for both files
-    const sourceChecksum = await computeChecksum(sourcePath);
-    const backupChecksum = await computeChecksum(backupPath);
-    // Compare checksums - any difference means corruption or tampering
-    if (sourceChecksum !== backupChecksum) {
-        return {
-            valid: false,
-            error: `Checksum mismatch: source=${sourceChecksum}, backup=${backupChecksum}`,
-            sourceChecksum,
-            backupChecksum,
-        };
-    }
-    // Verify backup can be opened as a valid SQLite database
-    // This catches cases where the file is intact but not a valid SQLite file
-    try {
-        const db = new DatabaseSync(backupPath, { readOnly: true });
-        try {
-            db.prepare('SELECT 1').get();
-        }
-        finally {
-            db.close();
-        }
-    }
-    catch (err) {
-        return {
-            valid: false,
-            error: `Backup is not a valid SQLite database: ${String(err)}`,
-            sourceChecksum,
-            backupChecksum,
-        };
-    }
-    // All checks passed
-    return {
-        valid: true,
-        sourceChecksum,
-        backupChecksum,
-    };
-}
-/**
- * Quick checksum comparison without SQLite verification.
- * Use when you only need to compare file contents.
- *
- * @param filePath1 - First file path
- * @param filePath2 - Second file path
- * @returns true if checksums match, false otherwise
- * @task T4728
- */
-export async function compareChecksums(filePath1, filePath2) {
-    const checksum1 = await computeChecksum(filePath1);
-    const checksum2 = await computeChecksum(filePath2);
-    return checksum1 === checksum2;
-}
-//# sourceMappingURL=checksum.js.map

package/dist/migration/checksum.js.map

@@ -1 +0,0 @@
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package/dist/migration/index.d.ts

@@ -1,79 +0,0 @@
-/**
- * Migration system - schema version detection and migration runner.
- * @task T4468
- * @epic T4454
- */
-export type { AgentOutputsMigrationResult, LegacyDetectionResult, } from './agent-outputs.js';
-export { detectLegacyAgentOutputs, migrateAgentOutputs, } from './agent-outputs.js';
-export type { VerificationResult } from './checksum.js';
-export { compareChecksums, computeChecksum, verifyBackup, } from './checksum.js';
-export type { LogLevel, MigrationLogEntry, MigrationLoggerConfig, } from './logger.js';
-export { createMigrationLogger, getLatestMigrationLog, logFileExists, MigrationLogger, readMigrationLog, } from './logger.js';
-export type { PreflightResult } from './preflight.js';
-export { checkStorageMigration } from './preflight.js';
-export type { MigrationPhase, MigrationProgress, MigrationState, SourceFileInfo, } from './state.js';
-export { addMigrationError, addMigrationWarning, canResumeMigration, clearMigrationState, completeMigration, createMigrationState, failMigration, getMigrationSummary, isMigrationInProgress, loadMigrationState, updateMigrationPhase, updateMigrationProgress, updateMigrationState, verifySourceIntegrity, } from './state.js';
-export type { JsonFileValidation, JsonValidationResult, } from './validate.js';
-export { checkTaskCountMismatch, formatValidationResult, validateSourceFiles, } from './validate.js';
-/** Schema version info. */
-export interface SchemaVersion {
-    current: string;
-    target: string;
-    needsMigration: boolean;
-}
-/** Migration function signature. */
-export type MigrationFn = (data: unknown) => unknown;
-/** Migration definition. */
-export interface MigrationDef {
-    fromVersion: string;
-    toVersion: string;
-    description: string;
-    migrate: MigrationFn;
-}
-/** Migration run result. */
-export interface MigrationResult {
-    file: string;
-    fromVersion: string;
-    toVersion: string;
-    migrationsApplied: string[];
-    success: boolean;
-    errors: string[];
-    dryRun: boolean;
-}
-/** Status of all data files. */
-export interface MigrationStatus {
-    todoJson: SchemaVersion | null;
-    configJson: SchemaVersion | null;
-    archiveJson: SchemaVersion | null;
-}
-/**
- * Detect schema version from a data file.
- * @task T4468
- */
-export declare function detectVersion(data: unknown): string;
-/**
- * Compare two version strings (X.Y.Z format, works for both semver and CalVer).
- * Returns -1 if a < b, 0 if equal, 1 if a > b.
- * @task T4468
- */
-export declare function compareSemver(a: string, b: string): number;
-/**
- * Get migration status for all data files.
- * @task T4468
- */
-export declare function getMigrationStatus(cwd?: string): Promise<MigrationStatus>;
-/**
- * Run migrations on a data file.
- * @task T4468
- */
-export declare function runMigration(fileType: string, options?: {
-    dryRun?: boolean;
-}, cwd?: string): Promise<MigrationResult>;
-/**
- * Run all pending migrations.
- * @task T4468
- */
-export declare function runAllMigrations(options?: {
-    dryRun?: boolean;
-}, cwd?: string): Promise<MigrationResult[]>;
-//# sourceMappingURL=index.d.ts.map

package/dist/migration/index.d.ts.map

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