@cleocode/core 2026.10.27 → 2026.11.1-canary.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (3974) hide show
  1. package/README.md +3 -1
  2. package/binaries/README.md +30 -10
  3. package/dist/.source-stamp.json +4 -0
  4. package/dist/adapters/adapter-registry.d.ts +0 -1
  5. package/dist/adapters/adapter-registry.js +2 -1
  6. package/dist/adapters/adapter-registry.js.map +1 -1
  7. package/dist/adapters/discovery.d.ts +9 -4
  8. package/dist/adapters/discovery.js +20 -6
  9. package/dist/adapters/discovery.js.map +1 -1
  10. package/dist/adapters/index.d.ts +0 -1
  11. package/dist/adapters/manager.d.ts +1 -2
  12. package/dist/adapters/manager.js +3 -3
  13. package/dist/adapters/manager.js.map +1 -1
  14. package/dist/admin/export-tasks.d.ts +0 -1
  15. package/dist/admin/export.d.ts +0 -1
  16. package/dist/admin/help.d.ts +0 -1
  17. package/dist/admin/import-tasks.d.ts +0 -1
  18. package/dist/admin/import.d.ts +0 -1
  19. package/dist/admin/index.d.ts +0 -1
  20. package/dist/admin/ops.d.ts +0 -1
  21. package/dist/adrs/find.d.ts +0 -1
  22. package/dist/adrs/index.d.ts +0 -1
  23. package/dist/adrs/link-pipeline.d.ts +0 -1
  24. package/dist/adrs/list.d.ts +0 -1
  25. package/dist/adrs/parse.d.ts +0 -1
  26. package/dist/adrs/show.d.ts +0 -1
  27. package/dist/adrs/sync.d.ts +0 -1
  28. package/dist/adrs/types.d.ts +0 -1
  29. package/dist/adrs/validate.d.ts +0 -1
  30. package/dist/agents/agent-capacity-tracker.d.ts +4 -5
  31. package/dist/agents/agent-capacity-tracker.js +6 -4
  32. package/dist/agents/agent-capacity-tracker.js.map +1 -1
  33. package/dist/agents/capacity.d.ts +1 -2
  34. package/dist/agents/capacity.js +3 -1
  35. package/dist/agents/capacity.js.map +1 -1
  36. package/dist/agents/ensure-agent-definitions.d.ts +106 -0
  37. package/dist/agents/ensure-agent-definitions.js +212 -0
  38. package/dist/agents/ensure-agent-definitions.js.map +1 -0
  39. package/dist/agents/execution-learning.d.ts +2 -2
  40. package/dist/agents/execution-learning.js +2 -1
  41. package/dist/agents/execution-learning.js.map +1 -1
  42. package/dist/agents/health-monitor.d.ts +1 -2
  43. package/dist/agents/health-monitor.js +1 -1
  44. package/dist/agents/index.d.ts +1 -2
  45. package/dist/agents/index.js +5 -3
  46. package/dist/agents/index.js.map +1 -1
  47. package/dist/agents/install-pipeline.d.ts +0 -1
  48. package/dist/agents/invoke-meta-agent.d.ts +0 -1
  49. package/dist/agents/public-api.d.ts +0 -1
  50. package/dist/agents/registry.d.ts +3 -4
  51. package/dist/agents/registry.js +6 -3
  52. package/dist/agents/registry.js.map +1 -1
  53. package/dist/agents/resolveAgentTemplates.d.ts +10 -1
  54. package/dist/agents/resolveAgentTemplates.js +23 -7
  55. package/dist/agents/resolveAgentTemplates.js.map +1 -1
  56. package/dist/agents/retry.d.ts +0 -1
  57. package/dist/agents/scaffold.d.ts +0 -1
  58. package/dist/agents/seed-install.d.ts +0 -1
  59. package/dist/agents/variable-substitution.d.ts +0 -1
  60. package/dist/agents/work-loop.d.ts +0 -1
  61. package/dist/audit/reconstruct.d.ts +0 -1
  62. package/dist/audit/reconstruct.js +3 -13
  63. package/dist/audit/reconstruct.js.map +1 -1
  64. package/dist/audit-prune.d.ts +0 -1
  65. package/dist/audit.d.ts +0 -1
  66. package/dist/backfill/index.d.ts +0 -1
  67. package/dist/bootstrap.d.ts +0 -1
  68. package/dist/brain-tools/brain-fetch.d.ts +0 -1
  69. package/dist/brain-tools/brain-observe.d.ts +0 -1
  70. package/dist/brain-tools/brain-search.d.ts +0 -1
  71. package/dist/brain-tools/brain-timeline.d.ts +0 -1
  72. package/dist/brain-tools/build-retrieval-bundle.d.ts +0 -1
  73. package/dist/brain-tools/index.d.ts +0 -1
  74. package/dist/build-provenance.json +2 -2
  75. package/dist/caamp/adapter.d.ts +0 -1
  76. package/dist/caamp/capability-check.d.ts +0 -1
  77. package/dist/caamp/index.d.ts +0 -1
  78. package/dist/caamp-export.d.ts +0 -1
  79. package/dist/caamp-init.d.ts +0 -1
  80. package/dist/changesets/index.d.ts +0 -1
  81. package/dist/changesets/parse-frontmatter.d.ts +0 -1
  82. package/dist/changesets/parser.d.ts +0 -1
  83. package/dist/changesets/writer.d.ts +0 -1
  84. package/dist/check/index.d.ts +0 -1
  85. package/dist/check/pr-gate.d.ts +1 -2
  86. package/dist/check/pr-gate.js +6 -6
  87. package/dist/check/pr-gate.js.map +1 -1
  88. package/dist/cleo.d.ts +0 -1
  89. package/dist/cleo.js +2 -1
  90. package/dist/cleo.js.map +1 -1
  91. package/dist/cloud/auto-sync-command-entry.d.ts +0 -1
  92. package/dist/cloud/auto-sync-command.d.ts +0 -1
  93. package/dist/cloud/auto-sync.d.ts +0 -1
  94. package/dist/cloud/crypto.d.ts +0 -1
  95. package/dist/cloud/doc-bytes.d.ts +0 -1
  96. package/dist/cloud/http.d.ts +0 -1
  97. package/dist/cloud/index.d.ts +0 -1
  98. package/dist/cloud/journal-tallies.d.ts +0 -1
  99. package/dist/cloud/journal.d.ts +0 -1
  100. package/dist/cloud/keys.d.ts +0 -1
  101. package/dist/cloud/manifest-check.d.ts +0 -1
  102. package/dist/cloud/nexus-attach.d.ts +2 -1
  103. package/dist/cloud/nexus-attach.js +4 -1
  104. package/dist/cloud/nexus-attach.js.map +1 -1
  105. package/dist/cloud/nexus-auth.d.ts +0 -1
  106. package/dist/cloud/nexus-cloud-activity.d.ts +0 -1
  107. package/dist/cloud/nexus-cloud-conflicts.d.ts +0 -1
  108. package/dist/cloud/nexus-cloud-device-overview.d.ts +0 -1
  109. package/dist/cloud/nexus-cloud-journal-activity.d.ts +0 -1
  110. package/dist/cloud/nexus-cloud-status.d.ts +0 -1
  111. package/dist/cloud/nexus-cloud.d.ts +0 -1
  112. package/dist/cloud/nexus-cloud.js +3 -3
  113. package/dist/cloud/nexus-cloud.js.map +1 -1
  114. package/dist/cloud/nexus-credentials.d.ts +0 -1
  115. package/dist/cloud/nexus-device.d.ts +1 -2
  116. package/dist/cloud/nexus-enrol.d.ts +0 -1
  117. package/dist/cloud/nexus-first-run.d.ts +0 -1
  118. package/dist/cloud/nexus-home.d.ts +0 -1
  119. package/dist/cloud/nexus-link.d.ts +18 -3
  120. package/dist/cloud/nexus-link.js +26 -6
  121. package/dist/cloud/nexus-link.js.map +1 -1
  122. package/dist/cloud/nexus-logout.d.ts +0 -1
  123. package/dist/cloud/nexus-presence-refresh.d.ts +5 -4
  124. package/dist/cloud/nexus-presence-refresh.js +7 -4
  125. package/dist/cloud/nexus-presence-refresh.js.map +1 -1
  126. package/dist/cloud/nexus-project-history.d.ts +0 -1
  127. package/dist/cloud/nexus-project-names.d.ts +0 -1
  128. package/dist/cloud/nexus-vault-keys.d.ts +0 -1
  129. package/dist/cloud/nexus-vault-state.d.ts +0 -1
  130. package/dist/cloud/nexus-vault.d.ts +0 -1
  131. package/dist/cloud/nexus-vault.js +3 -9
  132. package/dist/cloud/nexus-vault.js.map +1 -1
  133. package/dist/cloud/presence.d.ts +0 -1
  134. package/dist/cloud/projects.d.ts +0 -1
  135. package/dist/cloud/replica-rebind.d.ts +0 -1
  136. package/dist/cloud/secret-seal.d.ts +0 -1
  137. package/dist/cloud/signing.d.ts +0 -1
  138. package/dist/cloud/streams.d.ts +0 -1
  139. package/dist/cloud/uuidv7.d.ts +0 -1
  140. package/dist/code/engine-ops.d.ts +0 -1
  141. package/dist/code/index.d.ts +0 -1
  142. package/dist/code/outline.d.ts +0 -1
  143. package/dist/code/parser.d.ts +0 -1
  144. package/dist/code/search.d.ts +0 -1
  145. package/dist/code/unfold.d.ts +0 -1
  146. package/dist/codebase-map/analyzers/architecture.d.ts +0 -1
  147. package/dist/codebase-map/analyzers/concerns.d.ts +0 -1
  148. package/dist/codebase-map/analyzers/conventions.d.ts +0 -1
  149. package/dist/codebase-map/analyzers/integrations.d.ts +0 -1
  150. package/dist/codebase-map/analyzers/stack.d.ts +0 -1
  151. package/dist/codebase-map/analyzers/structure.d.ts +0 -1
  152. package/dist/codebase-map/analyzers/testing.d.ts +0 -1
  153. package/dist/codebase-map/index.d.ts +0 -1
  154. package/dist/codebase-map/store.d.ts +0 -1
  155. package/dist/codebase-map/summary.d.ts +0 -1
  156. package/dist/compliance/index.d.ts +0 -1
  157. package/dist/compliance/protocol-enforcement.d.ts +0 -1
  158. package/dist/compliance/protocol-rules.d.ts +0 -1
  159. package/dist/compliance/protocol-types.d.ts +0 -1
  160. package/dist/compliance/store.d.ts +0 -1
  161. package/dist/conduit/cloud-endpoint.d.ts +0 -1
  162. package/dist/conduit/conduit-client.d.ts +0 -1
  163. package/dist/conduit/delivery-router.d.ts +0 -1
  164. package/dist/conduit/factory.d.ts +0 -1
  165. package/dist/conduit/http-transport.d.ts +0 -1
  166. package/dist/conduit/index.d.ts +0 -2
  167. package/dist/conduit/index.js.map +1 -1
  168. package/dist/conduit/local-transport.d.ts +0 -1
  169. package/dist/conduit/local-tui-adapter.d.ts +0 -1
  170. package/dist/conduit/sse-transport.d.ts +0 -1
  171. package/dist/config/build-config.d.ts +0 -1
  172. package/dist/config/config-repair.d.ts +0 -1
  173. package/dist/config/engine-ops.d.ts +0 -1
  174. package/dist/config/legacy-keys.d.ts +62 -0
  175. package/dist/config/legacy-keys.js +117 -0
  176. package/dist/config/legacy-keys.js.map +1 -0
  177. package/dist/config/registry.d.ts +0 -1
  178. package/dist/config/registry.js +29 -7
  179. package/dist/config/registry.js.map +1 -1
  180. package/dist/config.d.ts +0 -1
  181. package/dist/config.js +42 -9
  182. package/dist/config.js.map +1 -1
  183. package/dist/constants.d.ts +0 -1
  184. package/dist/context/index.d.ts +0 -1
  185. package/dist/contracts.d.ts +0 -1
  186. package/dist/core-paths.d.ts +0 -1
  187. package/dist/crypto/credentials.d.ts +0 -1
  188. package/dist/db/index.d.ts +0 -1
  189. package/dist/decide/audit.d.ts +0 -1
  190. package/dist/decide/bench/dataset.d.ts +0 -1
  191. package/dist/decide/bench/index.d.ts +0 -1
  192. package/dist/decide/bench/metrics.d.ts +0 -1
  193. package/dist/decide/bench/operation.d.ts +0 -1
  194. package/dist/decide/bench/profiles.d.ts +0 -1
  195. package/dist/decide/bench/questions.d.ts +0 -1
  196. package/dist/decide/bench/report.d.ts +0 -1
  197. package/dist/decide/bench/runner.d.ts +0 -1
  198. package/dist/decide/bench/source.d.ts +0 -1
  199. package/dist/decide/bench/spot-check.d.ts +0 -1
  200. package/dist/decide/bench/stats.d.ts +0 -1
  201. package/dist/decide/bench/types.d.ts +0 -1
  202. package/dist/decide/budget.d.ts +0 -1
  203. package/dist/decide/cache.d.ts +0 -1
  204. package/dist/decide/client.d.ts +0 -1
  205. package/dist/decide/credentials.d.ts +0 -1
  206. package/dist/decide/index.d.ts +0 -1
  207. package/dist/decide/jev-wire.d.ts +0 -1
  208. package/dist/decide/operations.d.ts +0 -1
  209. package/dist/decide/provider-state.d.ts +0 -1
  210. package/dist/decide/provider.d.ts +0 -1
  211. package/dist/decide/providers.d.ts +0 -1
  212. package/dist/decide/site.d.ts +0 -1
  213. package/dist/decide/sites/list.d.ts +0 -1
  214. package/dist/decide/sites/registry.d.ts +40 -1
  215. package/dist/decide/sites/registry.js +38 -0
  216. package/dist/decide/sites/registry.js.map +1 -1
  217. package/dist/decide/spend.d.ts +0 -1
  218. package/dist/decide/transport.d.ts +0 -1
  219. package/dist/decide/wizard.d.ts +0 -1
  220. package/dist/deriver/consumer.d.ts +0 -1
  221. package/dist/deriver/deriver.d.ts +0 -1
  222. package/dist/deriver/enqueue.d.ts +0 -1
  223. package/dist/deriver/index.d.ts +0 -1
  224. package/dist/deriver/queue-manager.d.ts +0 -1
  225. package/dist/deriver/status.d.ts +0 -1
  226. package/dist/diagnostics/engine-ops.d.ts +0 -1
  227. package/dist/diagnostics/index.d.ts +0 -1
  228. package/dist/discovery.d.ts +0 -1
  229. package/dist/dispatch/config-domain-handler.d.ts +0 -1
  230. package/dist/dispatch/contracts/derive-output-contract.d.ts +1 -2
  231. package/dist/dispatch/contracts/derive-output-contract.js +3 -3
  232. package/dist/dispatch/contracts/ensures-schema.d.ts +0 -1
  233. package/dist/dispatch/contracts/input-contracts.d.ts +0 -1
  234. package/dist/dispatch/contracts/output-contracts.d.ts +0 -1
  235. package/dist/dispatch/describe-operation.d.ts +0 -1
  236. package/dist/dispatch/mutate-projection.d.ts +1 -2
  237. package/dist/dispatch/mutate-projection.js +45 -1
  238. package/dist/dispatch/mutate-projection.js.map +1 -1
  239. package/dist/dispatch/mvi-projection.d.ts +0 -1
  240. package/dist/dispatch/projection.d.ts +0 -1
  241. package/dist/dispatch/suggested-next.d.ts +0 -1
  242. package/dist/dispatch/validation.d.ts +0 -1
  243. package/dist/docs/adr-allocator.d.ts +3 -4
  244. package/dist/docs/adr-allocator.js +8 -5
  245. package/dist/docs/adr-allocator.js.map +1 -1
  246. package/dist/docs/blob-consolidation.d.ts +0 -1
  247. package/dist/docs/blob-consolidation.js +3 -2
  248. package/dist/docs/blob-consolidation.js.map +1 -1
  249. package/dist/docs/build-provenance-graph.d.ts +0 -1
  250. package/dist/docs/build-provenance-graph.js +6 -4
  251. package/dist/docs/build-provenance-graph.js.map +1 -1
  252. package/dist/docs/conduit-history-backfill.d.ts +0 -1
  253. package/dist/docs/conduit-history-backfill.js +2 -35
  254. package/dist/docs/conduit-history-backfill.js.map +1 -1
  255. package/dist/docs/derive-links.d.ts +12 -1
  256. package/dist/docs/derive-links.js +19 -0
  257. package/dist/docs/derive-links.js.map +1 -1
  258. package/dist/docs/display-alias.d.ts +0 -1
  259. package/dist/docs/display-alias.js +3 -0
  260. package/dist/docs/display-alias.js.map +1 -1
  261. package/dist/docs/doc-name-rule.d.ts +104 -0
  262. package/dist/docs/doc-name-rule.js +212 -0
  263. package/dist/docs/doc-name-rule.js.map +1 -0
  264. package/dist/docs/docs-audit.d.ts +0 -1
  265. package/dist/docs/docs-fts.d.ts +101 -0
  266. package/dist/docs/docs-fts.js +267 -0
  267. package/dist/docs/docs-fts.js.map +1 -0
  268. package/dist/docs/docs-generator.d.ts +0 -1
  269. package/dist/docs/docs-inconsistency-detector.d.ts +0 -1
  270. package/dist/docs/docs-inconsistency-detector.js +20 -16
  271. package/dist/docs/docs-inconsistency-detector.js.map +1 -1
  272. package/dist/docs/docs-ops.d.ts +40 -6
  273. package/dist/docs/docs-ops.js +176 -20
  274. package/dist/docs/docs-ops.js.map +1 -1
  275. package/dist/docs/docs-read-model.d.ts +53 -16
  276. package/dist/docs/docs-read-model.js +80 -118
  277. package/dist/docs/docs-read-model.js.map +1 -1
  278. package/dist/docs/docs-update.d.ts +21 -1
  279. package/dist/docs/docs-update.js +183 -146
  280. package/dist/docs/docs-update.js.map +1 -1
  281. package/dist/docs/doctor.d.ts +81 -5
  282. package/dist/docs/doctor.js +352 -26
  283. package/dist/docs/doctor.js.map +1 -1
  284. package/dist/docs/document-edges.d.ts +0 -1
  285. package/dist/docs/duplicate-check.d.ts +137 -0
  286. package/dist/docs/duplicate-check.js +286 -0
  287. package/dist/docs/duplicate-check.js.map +1 -0
  288. package/dist/docs/export-document.d.ts +0 -1
  289. package/dist/docs/fetch-result.d.ts +0 -1
  290. package/dist/docs/fetch-result.js +27 -0
  291. package/dist/docs/fetch-result.js.map +1 -1
  292. package/dist/docs/import/attachment-store-accessor.d.ts +0 -1
  293. package/dist/docs/import/audit.d.ts +0 -1
  294. package/dist/docs/import/dedup.d.ts +0 -1
  295. package/dist/docs/import/import-orchestrator.d.ts +0 -1
  296. package/dist/docs/import/scanner.d.ts +2 -1
  297. package/dist/docs/import/scanner.js +3 -1
  298. package/dist/docs/import/scanner.js.map +1 -1
  299. package/dist/docs/import/slug.d.ts +0 -1
  300. package/dist/docs/index.d.ts +0 -1
  301. package/dist/docs/legacy-doc-migration.d.ts +37 -5
  302. package/dist/docs/legacy-doc-migration.js +108 -48
  303. package/dist/docs/legacy-doc-migration.js.map +1 -1
  304. package/dist/docs/lineage.d.ts +80 -0
  305. package/dist/docs/lineage.js +246 -0
  306. package/dist/docs/lineage.js.map +1 -0
  307. package/dist/docs/migrate-agent-outputs.d.ts +0 -1
  308. package/dist/docs/modernize/apply.d.ts +138 -0
  309. package/dist/docs/modernize/apply.js +814 -0
  310. package/dist/docs/modernize/apply.js.map +1 -0
  311. package/dist/docs/modernize/guard.d.ts +93 -0
  312. package/dist/docs/modernize/guard.js +272 -0
  313. package/dist/docs/modernize/guard.js.map +1 -0
  314. package/dist/docs/modernize/index.d.ts +67 -0
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  317. package/dist/docs/modernize/judge.d.ts +84 -0
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  320. package/dist/docs/modernize/plan.d.ts +76 -0
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  323. package/dist/docs/modernize/restore.d.ts +54 -0
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  326. package/dist/docs/modernize/rules.d.ts +206 -0
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  329. package/dist/docs/modernize/store.d.ts +63 -0
  330. package/dist/docs/modernize/store.js +390 -0
  331. package/dist/docs/modernize/store.js.map +1 -0
  332. package/dist/docs/numbering.d.ts +0 -1
  333. package/dist/docs/numbering.js +20 -5
  334. package/dist/docs/numbering.js.map +1 -1
  335. package/dist/docs/projection.d.ts +0 -1
  336. package/dist/docs/publications-store.d.ts +16 -3
  337. package/dist/docs/publications-store.js +23 -2
  338. package/dist/docs/publications-store.js.map +1 -1
  339. package/dist/docs/publish-pr.d.ts +0 -1
  340. package/dist/docs/publish-pr.js +12 -1
  341. package/dist/docs/publish-pr.js.map +1 -1
  342. package/dist/docs/read-doc.d.ts +0 -1
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  344. package/dist/docs/read-doc.js.map +1 -1
  345. package/dist/docs/rot.d.ts +93 -0
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  347. package/dist/docs/rot.js.map +1 -0
  348. package/dist/docs/section-leases.d.ts +0 -1
  349. package/dist/docs/section-merge.d.ts +0 -1
  350. package/dist/docs/section-write-path.d.ts +35 -1
  351. package/dist/docs/section-write-path.js +76 -13
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  353. package/dist/docs/similarity-check.d.ts +2 -1
  354. package/dist/docs/similarity-check.js +6 -49
  355. package/dist/docs/similarity-check.js.map +1 -1
  356. package/dist/docs/slug-allocator.d.ts +0 -1
  357. package/dist/docs/slug-allocator.js +3 -1
  358. package/dist/docs/slug-allocator.js.map +1 -1
  359. package/dist/docs/slug-normalize.d.ts +0 -1
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  361. package/dist/docs/slug-rename.js +428 -0
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  3940. package/dist/validation/protocols/consensus.d.ts.map +0 -1
  3941. package/dist/validation/protocols/contribution.d.ts.map +0 -1
  3942. package/dist/validation/protocols/decomposition.d.ts.map +0 -1
  3943. package/dist/validation/protocols/implementation.d.ts.map +0 -1
  3944. package/dist/validation/protocols/provenance.d.ts.map +0 -1
  3945. package/dist/validation/protocols/release.d.ts.map +0 -1
  3946. package/dist/validation/protocols/research.d.ts.map +0 -1
  3947. package/dist/validation/protocols/specification.d.ts.map +0 -1
  3948. package/dist/validation/protocols/testing.d.ts.map +0 -1
  3949. package/dist/validation/protocols/validation.d.ts.map +0 -1
  3950. package/dist/validation/schema-integrity.d.ts.map +0 -1
  3951. package/dist/validation/schema-validator.d.ts.map +0 -1
  3952. package/dist/validation/validate-ops.d.ts.map +0 -1
  3953. package/dist/validation/validation-rules.d.ts.map +0 -1
  3954. package/dist/validation/verification.d.ts.map +0 -1
  3955. package/dist/verification/evidence-atoms.d.ts.map +0 -1
  3956. package/dist/verification/gates.d.ts.map +0 -1
  3957. package/dist/verification/verify-tools.d.ts.map +0 -1
  3958. package/dist/workgraph/containment.d.ts.map +0 -1
  3959. package/dist/workgraph/index.d.ts.map +0 -1
  3960. package/dist/workgraph/relations.d.ts.map +0 -1
  3961. package/dist/workgraph/reparent-preflight.d.ts.map +0 -1
  3962. package/dist/workgraph/scaffold-apply.d.ts.map +0 -1
  3963. package/dist/workgraph/scaffold-plan.d.ts.map +0 -1
  3964. package/dist/workgraph/scaffold-validate.d.ts.map +0 -1
  3965. package/dist/workgraph/structure-validation.d.ts.map +0 -1
  3966. package/dist/worktree/audit.d.ts.map +0 -1
  3967. package/dist/worktree/effective-head.d.ts.map +0 -1
  3968. package/dist/worktree/force-unlock.d.ts.map +0 -1
  3969. package/dist/worktree/isolation.d.ts.map +0 -1
  3970. package/dist/worktree/list.d.ts.map +0 -1
  3971. package/dist/worktree/prune.d.ts.map +0 -1
  3972. package/dist/worktree/sentinel-index.d.ts.map +0 -1
  3973. package/dist/worktree/worktree-adopt.d.ts.map +0 -1
  3974. package/dist/worktree-export.d.ts.map +0 -1
package/dist/docs/triage.js CHANGED
@@ -30,7 +30,6 @@
30
30
  * @task T13446
31
31
  * @saga T13339
32
32
  */
33
- import { asc, eq } from 'drizzle-orm';
34
33
  import { decideBatch } from '../decide/client.js';
35
34
  import { redactThenClip, resolveDecisionSiteSettings } from '../decide/site.js';
36
35
  import { DOC_TRIAGE_DECISION_SITE } from '../decide/sites/registry.js';
@@ -38,7 +37,7 @@ import { redactContent } from '../memory/redaction.js';
38
37
  import { getProjectRoot } from '../paths.js';
39
38
  import { createAttachmentStore } from '../store/attachment-store.js';
40
39
  import { getDb } from '../store/sqlite.js';
41
- import { ATTACHMENT_LIFECYCLE_STATUSES, attachmentRefs, attachments, } from '../store/tasks-schema.js';
40
+ import { ATTACHMENT_LIFECYCLE_STATUSES, attachmentRefs } from '../store/tasks-schema.js';
42
41
  /** Call-site id for the triage decision; keys the audit line. */
43
42
  export const DOC_TRIAGE_SITE = DOC_TRIAGE_DECISION_SITE.id;
44
43
  /** Config key selecting the System One mode for docs triage. */
@@ -109,41 +108,33 @@ export async function listTriageCandidates(opts = {}) {
109
108
  }
110
109
  const projectRoot = opts.projectRoot ?? getProjectRoot();
111
110
  const db = await getDb(projectRoot);
112
- const rows = await db
113
- .select({
114
- id: attachments.id,
115
- sha256: attachments.sha256,
116
- slug: attachments.slug,
117
- type: attachments.type,
118
- lifecycleStatus: attachments.lifecycleStatus,
119
- topics: attachments.topics,
120
- relatedTasks: attachments.relatedTasks,
121
- summary: attachments.summary,
122
- createdAt: attachments.createdAt,
123
- ownerId: attachmentRefs.ownerId,
124
- })
125
- .from(attachments)
126
- .leftJoin(attachmentRefs, eq(attachmentRefs.attachmentId, attachments.id))
127
- .where(eq(attachments.lifecycleStatus, status))
128
- .orderBy(asc(attachments.createdAt))
129
- .all();
130
- const seen = new Set();
111
+ // T14288: every doc through its identity (a legacy doc through its row),
112
+ // filtered by its lifecycle, oldest first; the owner is its first ref.
113
+ const { listDocRefs } = await import('./slug-rename.js');
114
+ const refs = (await listDocRefs(projectRoot))
115
+ .filter((r) => (r.meta.lifecycleStatus ?? r.ownRow.lifecycleStatus) === status)
116
+ .sort((a, b) => a.ownRow.createdAt.localeCompare(b.ownRow.createdAt));
117
+ const owners = new Map();
118
+ for (const ref of await db
119
+ .select({ attachmentId: attachmentRefs.attachmentId, ownerId: attachmentRefs.ownerId })
120
+ .from(attachmentRefs)
121
+ .all()) {
122
+ if (!owners.has(ref.attachmentId))
123
+ owners.set(ref.attachmentId, ref.ownerId);
124
+ }
131
125
  const out = [];
132
- for (const row of rows) {
133
- if (seen.has(row.id))
134
- continue;
135
- seen.add(row.id);
126
+ for (const ref of refs) {
136
127
  out.push({
137
- attachmentId: row.id,
138
- sha256: row.sha256,
139
- slug: row.slug ?? null,
140
- kind: row.type ?? null,
141
- status: row.lifecycleStatus,
142
- topics: parseStringArray(row.topics),
143
- relatedTasks: parseStringArray(row.relatedTasks),
144
- summary: row.summary ?? null,
145
- createdAt: row.createdAt,
146
- ownerId: row.ownerId ?? null,
128
+ attachmentId: ref.ownRow.id,
129
+ sha256: ref.sha256,
130
+ slug: ref.slug,
131
+ kind: ref.meta.docType,
132
+ status: ref.meta.lifecycleStatus ?? ref.ownRow.lifecycleStatus,
133
+ topics: parseStringArray(ref.meta.topics),
134
+ relatedTasks: parseStringArray(ref.meta.relatedTasks),
135
+ summary: ref.meta.summary,
136
+ createdAt: ref.ownRow.createdAt,
137
+ ownerId: owners.get(ref.ownRow.id) ?? null,
147
138
  });
148
139
  if (out.length >= limit)
149
140
  break;
package/dist/docs/triage.js.map CHANGED
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package/dist/docs/validate-body.d.ts CHANGED
@@ -56,4 +56,3 @@ export interface ValidateDocBodyResult {
56
56
  * When omitted, only built-in kinds are considered.
57
57
  */
58
58
  export declare function validateDocBody(kind: string, body: string, registry?: DocKindRegistry): ValidateDocBodyResult;
59
- //# sourceMappingURL=validate-body.d.ts.map
package/dist/docs/version-ssot.d.ts CHANGED
@@ -66,4 +66,3 @@ export declare function resolveVersion(version: string, strategy?: VersionResolu
66
66
  * @returns Audit result with findings.
67
67
  */
68
68
  export declare function auditVersionFields(canonicalVersion: string, projectRoot: string): Promise<VersionAuditResult>;
69
- //# sourceMappingURL=version-ssot.d.ts.map
package/dist/docs/wikilinks.d.ts CHANGED
@@ -9,10 +9,12 @@
9
9
  * - `related_tasks` → doc→T#### task edges (JSON array)
10
10
  * - `topics` → doc↔doc shared-topic edges (JSON array)
11
11
  *
12
- * No markdown body `[[link]]` parsing is performed (T11826 AC4) — the edges
13
- * derive purely from structured columns. The derivation is **idempotent**: it
14
- * truncates and rebuilds the whole table, so callers may re-run it after any
15
- * `docs add` / `supersede` / `docs update` write to keep the graph fresh.
12
+ * Those column-derived edges are **idempotent**: a rebuild replaces them all,
13
+ * so callers may re-run it after any `docs add` / `supersede` / `docs update`
14
+ * write to keep the graph fresh. The one body-derived relation, `links-to`
15
+ * (T14113, a `[[slug]]` wikilink in the doc body), is written per doc by
16
+ * {@link syncDocBodyWikilinks} at the docs write path — the only place the
17
+ * body is in hand — and a rebuild leaves those rows alone.
16
18
  *
17
19
  * This module is the runtime twin of the SQL backfill in
18
20
  * `migrations/drizzle-tasks/20260605000001_t11826-docs-wikilinks/migration.sql`
@@ -88,6 +90,20 @@ interface DerivationRow {
88
90
  * @task T11826
89
91
  */
90
92
  export declare function rebuildDocsWikilinks(opts?: RebuildDocsWikilinksOptions): Promise<RebuildDocsWikilinksResult>;
93
+ /**
94
+ * Replace one doc's body-derived `links-to` edges with `targets`.
95
+ *
96
+ * Called at the docs write path with the slugs the new body links to via
97
+ * `[[slug]]` (see `extractWikilinkTargets`); an empty list clears the doc's
98
+ * outbound body links. Self-links are dropped.
99
+ *
100
+ * @param slug - The doc whose body was written.
101
+ * @param targets - Slugs the body links to.
102
+ * @param opts - Optional project-root override.
103
+ * @returns The number of `links-to` edges now leaving `slug`.
104
+ * @task T14113
105
+ */
106
+ export declare function syncDocBodyWikilinks(slug: string, targets: readonly string[], opts?: RebuildDocsWikilinksOptions): Promise<number>;
91
107
  /**
92
108
  * Pure derivation: turn slugged `attachments` rows into the full edge set.
93
109
  *
@@ -118,4 +134,3 @@ export declare function getDocsWikilinks(slug: string, opts?: {
118
134
  projectRoot?: string;
119
135
  }): Promise<WikilinkEdge[]>;
120
136
  export {};
121
- //# sourceMappingURL=wikilinks.d.ts.map
package/dist/docs/wikilinks.js CHANGED
@@ -9,10 +9,12 @@
9
9
  * - `related_tasks` → doc→T#### task edges (JSON array)
10
10
  * - `topics` → doc↔doc shared-topic edges (JSON array)
11
11
  *
12
- * No markdown body `[[link]]` parsing is performed (T11826 AC4) — the edges
13
- * derive purely from structured columns. The derivation is **idempotent**: it
14
- * truncates and rebuilds the whole table, so callers may re-run it after any
15
- * `docs add` / `supersede` / `docs update` write to keep the graph fresh.
12
+ * Those column-derived edges are **idempotent**: a rebuild replaces them all,
13
+ * so callers may re-run it after any `docs add` / `supersede` / `docs update`
14
+ * write to keep the graph fresh. The one body-derived relation, `links-to`
15
+ * (T14113, a `[[slug]]` wikilink in the doc body), is written per doc by
16
+ * {@link syncDocBodyWikilinks} at the docs write path — the only place the
17
+ * body is in hand — and a rebuild leaves those rows alone.
16
18
  *
17
19
  * This module is the runtime twin of the SQL backfill in
18
20
  * `migrations/drizzle-tasks/20260605000001_t11826-docs-wikilinks/migration.sql`
@@ -23,11 +25,10 @@
23
25
  * @adr ADR-078 — Docs SSoT as provenance graph
24
26
  * @see build-provenance-graph.ts — the on-the-fly BFS this table makes O(edges)
25
27
  */
26
- import { eq, getTableColumns, or } from 'drizzle-orm';
28
+ import { and, count, eq, getTableColumns, ne, or } from 'drizzle-orm';
27
29
  import { getProjectRoot } from '../paths.js';
28
30
  import { docsWikilinks } from '../store/schema/attachments.js';
29
31
  import { getDb } from '../store/sqlite.js';
30
- import { attachments } from '../store/tasks-schema.js';
31
32
  /**
32
33
  * Idempotently rebuild the `docs_wikilinks` edge table from the provenance
33
34
  * columns on `attachments`.
@@ -51,41 +52,28 @@ import { attachments } from '../store/tasks-schema.js';
51
52
  export async function rebuildDocsWikilinks(opts = {}) {
52
53
  const projectRoot = opts.projectRoot ?? getProjectRoot();
53
54
  const db = await getDb(projectRoot);
54
- // Read every attachment's id, slug and provenance columns in one pass, then
55
- // resolve the supersession FK ids → slugs in JS via an id→slug map. (A
56
- // correlated SQL subquery aliasing the same table is fragile across SQLite
57
- // versions, so the resolution is done in memory.)
58
- const allRows = await db
59
- .select({
60
- id: attachments.id,
61
- slug: attachments.slug,
62
- supersedes: attachments.supersedes,
63
- supersededBy: attachments.supersededBy,
64
- relatedTasks: attachments.relatedTasks,
65
- topics: attachments.topics,
66
- })
67
- .from(attachments)
68
- .all();
69
- const slugById = new Map();
70
- for (const r of allRows) {
71
- if (r.slug)
72
- slugById.set(r.id, r.slug);
73
- }
74
- const slugged = allRows
75
- .filter((r) => typeof r.slug === 'string')
76
- .map((r) => ({
55
+ // T14288: every doc through its identity (a legacy doc through its row);
56
+ // supersession uids resolve to live slugs in memory, as do a legacy row's
57
+ // pointers (registry ids).
58
+ const { listDocRefs } = await import('./slug-rename.js');
59
+ const refs = await listDocRefs(projectRoot);
60
+ const slugByUid = new Map(refs.flatMap((r) => (r.docUid ? [[r.docUid, r.slug]] : [])));
61
+ const slugByRowId = new Map(refs.map((r) => [r.ownRow.id, r.slug]));
62
+ const linked = (uid, rowId) => (uid ? slugByUid.get(uid) : undefined) ?? (rowId ? (slugByRowId.get(rowId) ?? null) : null);
63
+ const slugged = refs.map((r) => ({
77
64
  slug: r.slug,
78
- supersedesSlug: r.supersedes ? (slugById.get(r.supersedes) ?? null) : null,
79
- supersededBySlug: r.supersededBy ? (slugById.get(r.supersededBy) ?? null) : null,
80
- relatedTasks: r.relatedTasks,
81
- topics: r.topics,
65
+ supersedesSlug: linked(r.meta.supersedesUid, r.ownRow.supersedes),
66
+ supersededBySlug: linked(r.meta.supersededByUid, r.ownRow.supersededBy),
67
+ relatedTasks: r.meta.relatedTasks,
68
+ topics: r.meta.topics,
82
69
  }));
83
70
  const edges = deriveWikilinkEdges(slugged);
84
71
  const nowIso = new Date().toISOString();
85
72
  // The node:sqlite driver is synchronous — drizzle's transaction callback must
86
73
  // be sync (an async body throws a DrizzleTypeError at build time).
87
74
  db.transaction((tx) => {
88
- tx.delete(docsWikilinks).run();
75
+ // `links-to` edges come from doc bodies, not columns: keep them (T14113).
76
+ tx.delete(docsWikilinks).where(ne(docsWikilinks.relation, 'links-to')).run();
89
77
  if (edges.length === 0)
90
78
  return;
91
79
  // Batch insert; INSERT OR IGNORE semantics via onConflictDoNothing keep the
@@ -110,15 +98,57 @@ export async function rebuildDocsWikilinks(opts = {}) {
110
98
  .run();
111
99
  }
112
100
  });
101
+ const linkRows = await db
102
+ .select({ n: count() })
103
+ .from(docsWikilinks)
104
+ .where(eq(docsWikilinks.relation, 'links-to'))
105
+ .all();
113
106
  const byRelation = {
114
107
  supersedes: 0,
115
108
  'superseded-by': 0,
116
109
  'related-task': 0,
117
110
  topic: 0,
111
+ 'links-to': linkRows[0]?.n ?? 0,
118
112
  };
119
113
  for (const e of edges)
120
114
  byRelation[e.relation] += 1;
121
- return { edgeCount: edges.length, byRelation };
115
+ return { edgeCount: edges.length + byRelation['links-to'], byRelation };
116
+ }
117
+ /**
118
+ * Replace one doc's body-derived `links-to` edges with `targets`.
119
+ *
120
+ * Called at the docs write path with the slugs the new body links to via
121
+ * `[[slug]]` (see `extractWikilinkTargets`); an empty list clears the doc's
122
+ * outbound body links. Self-links are dropped.
123
+ *
124
+ * @param slug - The doc whose body was written.
125
+ * @param targets - Slugs the body links to.
126
+ * @param opts - Optional project-root override.
127
+ * @returns The number of `links-to` edges now leaving `slug`.
128
+ * @task T14113
129
+ */
130
+ export async function syncDocBodyWikilinks(slug, targets, opts = {}) {
131
+ const db = await getDb(opts.projectRoot ?? getProjectRoot());
132
+ const unique = [...new Set(targets)].filter((t) => t !== slug);
133
+ const nowIso = new Date().toISOString();
134
+ db.transaction((tx) => {
135
+ tx.delete(docsWikilinks)
136
+ .where(and(eq(docsWikilinks.fromSlug, slug), eq(docsWikilinks.relation, 'links-to')))
137
+ .run();
138
+ if (unique.length === 0)
139
+ return;
140
+ tx.insert(docsWikilinks)
141
+ .values(unique.map((toSlug) => ({
142
+ fromSlug: slug,
143
+ toSlug,
144
+ relation: 'links-to',
145
+ toIsTask: false,
146
+ derivedAt: nowIso,
147
+ })))
148
+ .onConflictDoNothing()
149
+ .run();
150
+ });
151
+ return unique.length;
122
152
  }
123
153
  /**
124
154
  * Pure derivation: turn slugged `attachments` rows into the full edge set.
package/dist/docs/wikilinks.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/docs/writer-registry.d.ts CHANGED
@@ -322,4 +322,3 @@ export declare class WriterRegistry {
322
322
  */
323
323
  static write(args: WriteArgs): Promise<WriteResult>;
324
324
  }
325
- //# sourceMappingURL=writer-registry.d.ts.map
package/dist/docs/writer-registry.js CHANGED
@@ -184,6 +184,39 @@ const DESCRIPTORS = Object.freeze([
184
184
  mode: 'ssot',
185
185
  sourcePath: 'packages/cleo/src/dispatch/domains/docs.ts',
186
186
  },
187
+ // T14107: user-doc kinds (how-to, explanation, reference) and migrations.
188
+ {
189
+ kind: 'guide',
190
+ verb: 'docs add',
191
+ dispatchOp: 'docs.add',
192
+ coreFn: 'docs.add (dispatch handler)',
193
+ mode: 'ssot',
194
+ sourcePath: 'packages/cleo/src/dispatch/domains/docs.ts',
195
+ },
196
+ {
197
+ kind: 'concept',
198
+ verb: 'docs add',
199
+ dispatchOp: 'docs.add',
200
+ coreFn: 'docs.add (dispatch handler)',
201
+ mode: 'ssot',
202
+ sourcePath: 'packages/cleo/src/dispatch/domains/docs.ts',
203
+ },
204
+ {
205
+ kind: 'reference',
206
+ verb: 'docs add',
207
+ dispatchOp: 'docs.add',
208
+ coreFn: 'docs.add (dispatch handler)',
209
+ mode: 'ssot',
210
+ sourcePath: 'packages/cleo/src/dispatch/domains/docs.ts',
211
+ },
212
+ {
213
+ kind: 'migration',
214
+ verb: 'docs add',
215
+ dispatchOp: 'docs.add',
216
+ coreFn: 'docs.add (dispatch handler)',
217
+ mode: 'ssot',
218
+ sourcePath: 'packages/cleo/src/dispatch/domains/docs.ts',
219
+ },
187
220
  ]);
188
221
  /**
189
222
  * Canonical list of T10368-audited system-managed writers.
package/dist/docs/writer-registry.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/doctor/acceptance-drift.d.ts CHANGED
@@ -259,4 +259,3 @@ export declare function classifyAcceptanceDrift(row: {
259
259
  * @task T12157
260
260
  */
261
261
  export declare function scanAcceptanceDrift(projectRoot: string): AcceptanceDriftScanResult;
262
- //# sourceMappingURL=acceptance-drift.d.ts.map
package/dist/doctor/container-reaper.d.ts CHANGED
@@ -104,4 +104,3 @@ export declare function collectContainerReapInput(): Promise<ContainerReapInput>
104
104
  * @task T13436
105
105
  */
106
106
  export declare function applyContainerReap(plan: ContainerReapPlan, docker?: DockerRunFn): Promise<ContainerReapPlan>;
107
- //# sourceMappingURL=container-reaper.d.ts.map
package/dist/doctor/db-substrate.d.ts CHANGED
@@ -395,4 +395,3 @@ export declare function surveyDbSubstrate(projectRoot: string, options?: DbSubst
395
395
  * @returns A {@link DbSubstrateAuditResult} with `scope='fleet'`.
396
396
  */
397
397
  export declare function surveyFleetDbSubstrate(fleetRoot: string | readonly string[], options?: DbSubstrateSurveyOptions): DbSubstrateAuditResult;
398
- //# sourceMappingURL=db-substrate.d.ts.map
package/dist/doctor/db-substrate.js CHANGED
@@ -662,16 +662,24 @@ const CROSS_DB_QUERY_LIMIT = 100;
662
662
  * @task T10323
663
663
  */
664
664
  const CROSS_DB_SAMPLE_LIMIT = 5;
665
- /** Stable text for the I3 path-mismatch invariant fix. */
666
- const I3_FIX = 'Run `cleo nexus reset-project-id` to realign nexus.db with the declared identity (.cleo/project.json)';
667
- /** Stable text for the I1 invariant fix. */
668
- const I1_FIX = 'Run `cleo memory observe --task <taskId>` to re-anchor';
665
+ /**
666
+ * Stable text for the I3 path-mismatch invariant fix. I3 reads the inventory's
667
+ * `nexus` role, the retired `<cleoHome>/nexus.db`; the live registry is in the
668
+ * global `cleo.db`, which `cleo doctor projects` repairs and I3 never reads.
669
+ * The one verb that acts on the file I3 reads archives it as exodus residue.
670
+ */
671
+ const I3_FIX = 'This row is in the retired <cleoHome>/nexus.db; the live registry is in the global cleo.db. Run `cleo doctor exodus-residue --fix` to archive the retired file (it acts only once the global migration is complete); no CLI verb edits the row itself';
672
+ /**
673
+ * Stable text for the I1 invariant fix: the reconciliation step of brain
674
+ * maintenance deletes `brain_memory_links` rows whose task is gone.
675
+ */
676
+ const I1_FIX = 'Run `cleo brain maintenance` — its reconciliation step removes memory links whose task no longer exists';
669
677
  /** Stable text for the I2 invariant fix. */
670
- const I2_FIX = 'Run `cleo docs prune --remove-orphan-blobs`';
678
+ const I2_FIX = 'Repair blob attachment anchor — delete the orphan blob_attachments row from manifest.db (no CLI verb prunes it)';
671
679
  /** Stable text for the I4 invariant fix. */
672
- const I4_FIX = 'Repair llmtxt session linkage — re-run `cleo session start --link-task <taskId>` or prune the orphan llmtxt session row';
680
+ const I4_FIX = 'Repair llmtxt session linkage — re-anchor the row to a live sessions row or delete the orphan llmtxt row (no CLI verb prunes it)';
673
681
  /** Stable text for the I5 invariant fix. */
674
- const I5_FIX = 'Repair conduit job anchor — re-anchor the job to a live tasks/brain row or run `cleo conduit prune --orphans`';
682
+ const I5_FIX = 'Repair conduit job anchor — re-anchor the job to a live tasks/brain row or delete the orphan conduit_dead_letters row (no CLI verb prunes it)';
675
683
  /**
676
684
  * Helper: open a snapshot of `filePath` when it exists, returning `null`
677
685
  * (no throw) for every failure mode. The cross-DB walker tolerates every