@cleocode/core 2026.10.27 → 2026.11.1-canary.10

package/dist/spawn/branch-lock.js

@@ -20,15 +20,15 @@
  * @adr ADR-062
  */
 import { execFileSync } from 'node:child_process';
-import { accessSync, appendFileSync, chmodSync, constants, existsSync, mkdirSync, realpathSync, } from 'node:fs';
+import { accessSync, appendFileSync, chmodSync, constants, existsSync, mkdirSync } from 'node:fs';
 import { platform } from 'node:os';
-import { dirname, isAbsolute, join, relative } from 'node:path';
+import { dirname, join } from 'node:path';
 import { installGitShimLaunchers, resolveShimBinPath } from '@cleocode/git-shim';
 import { computeProjectHash, findOnPath, pathEnvKey, prependPathEntry, resolveWorktreeRootForHash, } from '@cleocode/paths';
 // ---------------------------------------------------------------------------
 // Re-exports from @cleocode/worktree
 // ---------------------------------------------------------------------------
-import { createWorktree, describeDisposalBlockers, forceRemoveWorktreeDir, getGitRoot, gitSync, guardWorktreeDisposal, locateTaskWorktree, napiDestroyWorktree, pruneWorktrees, readWorktreeProvisioning, releaseWorktreeTaskLock, } from '@cleocode/worktree';
+import { createWorktree, disposeWorktree, getGitRoot, gitSync, locateTaskWorktree, pruneWorktrees, readWorktreeProvisioning, } from '@cleocode/worktree';
 import { resolveSpawnLockHolder } from './worktree-lock-holder.js';
 // ---------------------------------------------------------------------------
 // L1 — Worktree lifecycle
@@ -242,29 +242,6 @@ export function pruneOrphanedWorktrees(projectRoot, taskIds) {
         errors: result.errors,
     };
 }
-/**
- * Move this process out of `dir` before it is deleted (T12671). `cleo done`
- * run inside a task worktree completes the task, which prunes that worktree;
- * a process whose cwd no longer exists then fails every later resolution from
- * it (the audit write logged "No CLEO project found" beside `success: true`).
- *
- * @param dir - Directory about to be removed.
- * @param to - Directory to move to (the repository root).
- */
-function leaveDirectoryBeforeRemoval(dir, to) {
-    let cwd;
-    let target;
-    try {
-        cwd = realpathSync(process.cwd()); // CWD-OK: the process's own cwd is the subject
-        target = realpathSync(dir);
-    }
-    catch {
-        return;
-    }
-    const rel = relative(target, cwd);
-    if (rel === '' || (!rel.startsWith('..') && !isAbsolute(rel)))
-        process.chdir(to);
-}
 /**
  * Prune the worktree for a single completed or cancelled task.
  *
@@ -276,22 +253,25 @@ function leaveDirectoryBeforeRemoval(dir, to) {
  *
  * Behaviour:
  * - Returns `{ status: 'skipped' }` when no worktree exists for the task.
- * - Unlocks the worktree before removing (handles locked worktrees created by spawn).
- * - Falls back to `rmSync` if `git worktree remove` fails.
+ * - Disposes of the worktree through the worktree package's `disposeWorktree`
+ *   engine (T13924): it is removed only with proof nothing in it is lost, and
+ *   otherwise kept (`{ status: 'skipped', error }`, `wasDirty` when its
+ *   content or commits are unpreserved) with a `kept` audit entry in
+ *   `.cleo/audit/worktree-prune.jsonl`. A dirty worktree is never force-removed.
+ * - Keeps the worktree (`{ status: 'skipped', kept }`) while another checkout
+ *   symlinks into it or it holds evidence found nowhere else (T13696).
  * - Deletes `task/<taskId>` branch only when it has 0 commits ahead of the
  *   current HEAD (i.e. the branch has already been merged or is empty).
  *   When commits are still present the branch is left in place and reported in
  *   the result — callers should use `completeAgentWorktreeViaMerge` first.
- * - Always writes a `--force` remove with an audit log entry (`.cleo/audit/worktree-prune.jsonl`)
- *   when the worktree is detected as dirty.
- * - Keeps the worktree (`{ status: 'skipped', kept }`) while another checkout
- *   symlinks into it or it holds evidence found nowhere else (T13696).
  * - Never throws — failures are returned in `{ status: 'error', error }`.
  *
  * @param taskId     - The CLEO task ID (e.g. "T1462").
  * @param projectRoot - Absolute path to the project root.
  * @param opts.auditLogPath - Override path for the audit JSONL (testing).
  * @param opts.evidence - The task's recorded evidence atoms (T13696).
+ * @param opts.defaultBranch - The branch the task's commits were integrated
+ *   into; they count as preserved there (T13924).
  * @returns Prune outcome.
  *
  * @task T1462
@@ -317,34 +297,33 @@ export function pruneWorktree(taskId, projectRoot, opts = {}) {
     const worktreePath = join(worktreeRoot, taskId);
     // Fast-path: nothing to do if the worktree directory doesn't exist.
     if (!existsSync(worktreePath)) {
-        // Still attempt to remove a stale branch if it exists.
-        let branchDeleted = false;
-        try {
-            const branchExists = gitSync(['branch', '--list', branch], gitRoot);
-            if (branchExists) {
-                gitSync(['branch', '-D', branch], gitRoot);
-                branchDeleted = true;
-            }
-            else {
-                branchDeleted = true; // nothing to delete
-            }
-        }
-        catch {
-            /* best-effort */
-        }
-        return { taskId, status: 'skipped', worktreeRemoved: false, branchDeleted, wasDirty: false };
+        // Still remove a stale branch, but only one holding no commits beyond HEAD.
+        return {
+            taskId,
+            status: 'skipped',
+            worktreeRemoved: false,
+            branchDeleted: deleteBranchWithoutNewCommits(gitRoot, branch),
+            wasDirty: false,
+        };
     }
-    // T13696: removal deletes the whole directory, so refuse while another
-    // checkout links into it or it holds the only copy of the task's evidence.
-    const kept = guardWorktreeDisposal(worktreePath, {
-        taskId,
-        reason: 'complete',
+    // T13924: the one disposal engine. It keeps the worktree while another
+    // checkout links into it, evidence lives only there (T13696), or anything
+    // in it (changes, untracked or ignored files, commits on no remote and no
+    // other branch) is not proven preserved. Nothing is force-removed here.
+    const disposal = disposeWorktree({
+        worktreePath,
         gitRoot,
         projectRoot,
+        taskId,
+        reason: 'complete',
         evidence: opts.evidence,
+        defaultBranch: opts.defaultBranch,
     });
-    if (kept !== null) {
-        const error = describeDisposalBlockers(worktreePath, kept);
+    const wasDirty = disposal.unpreserved !== undefined;
+    if (!disposal.removed) {
+        const error = disposal.kept
+            ? (disposal.keptReason ?? '')
+            : `Worktree ${worktreePath} kept: ${disposal.keptReason ?? 'not proven preserved'}. Commit and push the work, then run \`cleo worktree destroy ${taskId}\` (or \`--force\` to archive it and remove it).`;
         try {
             const logPath = opts.auditLogPath ?? join(projectRoot, '.cleo', 'audit', 'worktree-prune.jsonl');
             mkdirSync(dirname(logPath), { recursive: true });
@@ -353,7 +332,8 @@ export function pruneWorktree(taskId, projectRoot, opts = {}) {
                 taskId,
                 worktreePath,
                 action: 'kept',
-                ...kept,
+                ...(disposal.kept ?? {}),
+                ...(disposal.unpreserved !== undefined ? { unpreserved: disposal.unpreserved } : {}),
                 agent: process.env['CLEO_AGENT_ID'] ?? 'cleo',
             });
             appendFileSync(logPath, entry + '\n', 'utf-8');
@@ -363,122 +343,53 @@ export function pruneWorktree(taskId, projectRoot, opts = {}) {
         }
         return {
             taskId,
-            status: 'skipped',
+            status: disposal.failed !== undefined ? 'error' : 'skipped',
             worktreeRemoved: false,
             branchDeleted: false,
-            wasDirty: false,
+            wasDirty,
             error,
-            kept,
+            ...(disposal.kept ? { kept: disposal.kept } : {}),
         };
     }
-    // Detect dirty state: uncommitted changes in the worktree.
-    let wasDirty = false;
+    return {
+        taskId,
+        status: 'pruned',
+        worktreeRemoved: true,
+        branchDeleted: deleteBranchWithoutNewCommits(gitRoot, branch),
+        wasDirty,
+    };
+}
+/**
+ * Delete `branch` only when it holds no commit beyond the repository's current
+ * HEAD (merged or empty); a missing branch counts as deleted. Never throws.
+ *
+ * @param gitRoot - Repository root.
+ * @param branch - Local branch name.
+ * @returns Whether the branch is gone.
+ */
+function deleteBranchWithoutNewCommits(gitRoot, branch) {
     try {
-        const statusOut = gitSync(['status', '--porcelain'], worktreePath);
-        wasDirty = statusOut.length > 0;
-    }
-    catch {
-        // If we can't check status assume clean.
-    }
-    // If dirty, write an audit log entry before force-removing.
-    if (wasDirty) {
+        if (!gitSync(['branch', '--list', branch], gitRoot))
+            return true; // already gone
+        let baseRef;
         try {
-            const auditDir = opts.auditLogPath
-                ? dirname(opts.auditLogPath)
-                : join(projectRoot, '.cleo', 'audit');
-            mkdirSync(auditDir, { recursive: true });
-            const logPath = opts.auditLogPath ?? join(auditDir, 'worktree-prune.jsonl');
-            const entry = JSON.stringify({
-                timestamp: new Date().toISOString(),
-                taskId,
-                worktreePath,
-                action: 'force-remove-dirty',
-                agent: process.env['CLEO_AGENT_ID'] ?? 'cleo',
-            });
-            appendFileSync(logPath, entry + '\n', 'utf-8');
+            baseRef = gitSync(['rev-parse', '--abbrev-ref', 'HEAD'], gitRoot);
         }
         catch {
-            /* audit is best-effort */
-        }
-    }
-    // T11123: Unlock and remove the worktree via NAPI destroyWorktree
-    // (Rust worktrunk-core) instead of raw git worktree unlock + remove
-    // shell-outs. Keeps filesystem rmSync fallback for stale/corrupted
-    // directories that NAPI cannot resolve.
-    let worktreeRemoved = false;
-    leaveDirectoryBeforeRemoval(worktreePath, gitRoot);
-    try {
-        const napiResult = napiDestroyWorktree({
-            repoRoot: gitRoot,
-            worktreePath,
-            force: true,
-        });
-        worktreeRemoved = napiResult.removed;
-        // T11033 — NAPI may report success even when untracked directories
-        // survive. Verify on-disk reality.
-        if (worktreeRemoved && existsSync(worktreePath)) {
-            worktreeRemoved = false;
-        }
-    }
-    catch {
-        // napi failed — fall through to filesystem removal
-    }
-    if (!worktreeRemoved) {
-        // Filesystem fallback (T10858: owned by the worktree facade).
-        try {
-            forceRemoveWorktreeDir(gitRoot, worktreePath);
-            worktreeRemoved = true;
-        }
-        catch (err) {
-            return {
-                taskId,
-                status: 'error',
-                worktreeRemoved: false,
-                branchDeleted: false,
-                wasDirty,
-                error: `Failed to remove worktree: ${err instanceof Error ? err.message : String(err)}`,
-            };
-        }
-    }
-    // T12506: the worktree is gone (e.g. integrated by completeAgentWorktreeViaMerge),
-    // so its per-task lock guards nothing. Leaving it held made the next spawn
-    // of the task fail E_WORKTREE_LOCKED for the rest of the owner's lifetime.
-    releaseWorktreeTaskLock(computeProjectHash(projectRoot), taskId);
-    // Delete the branch only when it has no commits ahead of current HEAD.
-    let branchDeleted = false;
-    try {
-        const branchExists = gitSync(['branch', '--list', branch], gitRoot);
-        if (branchExists) {
-            // Check for unmerged commits.
-            let baseRef;
-            try {
-                baseRef = gitSync(['rev-parse', '--abbrev-ref', 'HEAD'], gitRoot);
-            }
-            catch {
-                baseRef = 'main';
-            }
-            const aheadLog = gitSync(['log', '--format=%H', `${baseRef}..${branch}`], gitRoot);
-            const aheadCommits = aheadLog
-                .split('\n')
-                .map((s) => s.trim())
-                .filter(Boolean);
-            if (aheadCommits.length === 0) {
-                gitSync(['branch', '-D', branch], gitRoot);
-                branchDeleted = true;
-            }
-            else {
-                // Commits ahead — leave branch, surface in result.
-                branchDeleted = false;
-            }
-        }
-        else {
-            branchDeleted = true; // already gone
+            baseRef = 'main';
         }
+        const ahead = gitSync(['log', '--format=%H', `${baseRef}..${branch}`], gitRoot)
+            .split('\n')
+            .map((line) => line.trim())
+            .filter(Boolean);
+        if (ahead.length > 0)
+            return false; // commits ahead — leave the branch
+        gitSync(['branch', '-D', branch], gitRoot);
+        return true;
     }
     catch {
-        /* best-effort */
+        return false;
     }
-    return { taskId, status: 'pruned', worktreeRemoved, branchDeleted, wasDirty };
 }
 /**
  * Install the git shim launcher in the project's `.cleo/bin/git-shim/` dir

package/dist/spawn/branch-lock.js.map

@@ -1 +1 @@
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package/dist/spawn/index.d.ts

@@ -14,4 +14,3 @@ export { abandonSpawnSession, allocateSpawnSession, deriveAgentHandle, requireSp
 export { completeAgentWorktreeViaMerge, getDefaultBranch } from './branch-integration.js';
 export type { PruneWorktreeResult } from './branch-lock.js';
 export { applyFsHarden, buildAgentEnv, buildWorktreeSpawnResult, createAgentWorktree, detectFsHardenCapabilities, ensureGitShimDir, pruneOrphanedWorktrees, pruneWorktree, removeFsHarden, resolveAgentWorktreeRoot, } from './branch-lock.js';
-//# sourceMappingURL=index.d.ts.map

package/dist/spawn/worktree-lock-holder.d.ts

@@ -92,4 +92,3 @@ export declare function auditWorktreeLockReclaim(projectRoot: string, taskId: st
  * @returns The task ids whose locks were released.
  */
 export declare function releaseSessionWorktreeLocks(projectRoot: string, sessionId: string): string[];
-//# sourceMappingURL=worktree-lock-holder.d.ts.map

package/dist/stats/index.d.ts

@@ -150,4 +150,3 @@ export interface StatsData {
 export declare function getProjectStatsExtended(cwd: string, params?: {
     period?: number;
 }, accessor?: DataAccessor): Promise<StatsData>;
-//# sourceMappingURL=index.d.ts.map

package/dist/stats/workflow-telemetry.d.ts

@@ -86,4 +86,3 @@ export declare function getWorkflowComplianceReport(opts: {
     since?: string;
     cwd?: string;
 }): Promise<WorkflowComplianceReport>;
-//# sourceMappingURL=workflow-telemetry.d.ts.map

package/dist/status/index.d.ts

@@ -8,7 +8,7 @@
  * is stored and bounded by a short timeout (T12712). Read-only; safe to
  * invoke on every CLI tick.
  *
- * Spec: `docs/plans/E-CONFIG-AUTH-UNIFY.md` §3.3.6 (`CleoStatus` interface)
+ * Spec: `cleo docs fetch e-config-auth-unify` §3.3.6 (`CleoStatus` interface)
  * and §5.3 T-E3-4 (acceptance criteria).
  *
  * Performance contract: `getCleoStatus()` MUST complete in under 2 seconds
@@ -128,4 +128,3 @@ export interface CleoStatus {
  * @task T9423
  */
 export declare function getCleoStatus(): Promise<CleoStatus>;
-//# sourceMappingURL=index.d.ts.map

package/dist/status/index.js

@@ -8,7 +8,7 @@
  * is stored and bounded by a short timeout (T12712). Read-only; safe to
  * invoke on every CLI tick.
  *
- * Spec: `docs/plans/E-CONFIG-AUTH-UNIFY.md` §3.3.6 (`CleoStatus` interface)
+ * Spec: `cleo docs fetch e-config-auth-unify` §3.3.6 (`CleoStatus` interface)
  * and §5.3 T-E3-4 (acceptance criteria).
  *
  * Performance contract: `getCleoStatus()` MUST complete in under 2 seconds

package/dist/sticky/archive.d.ts

@@ -16,4 +16,3 @@ import type { StickyNote } from './types.js';
  * @throws CleoError when the sticky was converted (T13620)
  */
 export declare function archiveSticky(id: string, projectRoot: string): Promise<StickyNote | null>;
-//# sourceMappingURL=archive.d.ts.map

package/dist/sticky/convert.d.ts

@@ -111,4 +111,3 @@ export declare function promoteAttentionToMemory(row: BrainAttentionRow, project
         message: string;
     };
 }>;
-//# sourceMappingURL=convert.d.ts.map

package/dist/sticky/create.d.ts

@@ -15,4 +15,3 @@ import type { CreateStickyParams, StickyNote } from './types.js';
  * @returns The created sticky note
  */
 export declare function addSticky(params: CreateStickyParams, projectRoot: string): Promise<StickyNote>;
-//# sourceMappingURL=create.d.ts.map

package/dist/sticky/engine-ops.d.ts

@@ -123,4 +123,3 @@ export declare function stickyConvertToSessionNote(projectRoot: string, stickyId
  * @returns EngineResult with purged sticky note
  */
 export declare function stickyPurge(projectRoot: string, id: string): Promise<EngineResult<StickyNote>>;
-//# sourceMappingURL=engine-ops.d.ts.map

package/dist/sticky/id.d.ts

@@ -15,4 +15,3 @@
  * @returns Next sticky note ID (e.g., "SN-042")
  */
 export declare function generateStickyId(projectRoot: string): Promise<string>;
-//# sourceMappingURL=id.d.ts.map

package/dist/sticky/index.d.ts

@@ -14,4 +14,3 @@ export { listStickies } from './list.js';
 export { purgeSticky } from './purge.js';
 export { getSticky } from './show.js';
 export type { ConvertedTarget, ConvertedTargetType, ConvertStickyParams, CreateStickyParams, ListStickiesParams, StickyNote, StickyNoteColor, StickyNotePriority, StickyNoteStatus, } from './types.js';
-//# sourceMappingURL=index.d.ts.map

package/dist/sticky/list.d.ts

@@ -15,4 +15,3 @@ import type { ListStickiesParams, StickyNote } from './types.js';
  * @returns Array of sticky notes
  */
 export declare function listStickies(params: ListStickiesParams, projectRoot: string): Promise<StickyNote[]>;
-//# sourceMappingURL=list.d.ts.map

package/dist/sticky/ops.d.ts

@@ -115,4 +115,3 @@ export declare const stickyCoreOps: {
     /** Attach a sticky note to an existing task as a note. */
     readonly 'convert.task_note': (params: StickyConvertTaskNoteParams) => Promise<StickyConvertResult>;
 };
-//# sourceMappingURL=ops.d.ts.map

package/dist/sticky/purge.d.ts

@@ -14,4 +14,3 @@ import type { StickyNote } from './types.js';
  * @returns The deleted sticky note or null if not found
  */
 export declare function purgeSticky(id: string, projectRoot: string): Promise<StickyNote | null>;
-//# sourceMappingURL=purge.d.ts.map

package/dist/sticky/show.d.ts

@@ -15,4 +15,3 @@ import type { StickyNote } from './types.js';
  * @returns The sticky note or null if not found
  */
 export declare function getSticky(id: string, projectRoot: string): Promise<StickyNote | null>;
-//# sourceMappingURL=show.d.ts.map

package/dist/sticky/types.d.ts

@@ -81,4 +81,3 @@ export interface ConvertStickyParams {
     /** Optional taskId when converting to task note */
     taskId?: string;
 }
-//# sourceMappingURL=types.d.ts.map

package/dist/store/ac-binding-prune.d.ts

@@ -108,8 +108,9 @@ export declare function selectOrphanAcBindings(db: TasksDb): Promise<AcBindingRo
 /**
  * Infer the task that owned an orphan binding's AC.
  *
- * Only `satisfies:<source>-><target>#<ac>` atom ids name it (the target owns
- * the AC). Every other atom shape yields {@link UNKNOWN_BINDING_OWNER}.
+ * Only `satisfies:<source>-><target>#<ac>` and per-criterion receipt
+ * `receipt:<records>-><target>#<ac>` (T14199) atom ids name it (the target
+ * owns the AC). Every other atom shape yields {@link UNKNOWN_BINDING_OWNER}.
  *
  * @param binding - an orphan binding
  * @returns owning task id, or `'unknown'`
@@ -141,4 +142,3 @@ export declare function pruneOrphanAcBindings(db: TasksDb): Promise<AcBindingRow
  */
 export declare function selectPrunedAcBindings(db: TasksDb, ownerTaskId: string): Promise<AcBindingRow[]>;
 export {};
-//# sourceMappingURL=ac-binding-prune.d.ts.map

package/dist/store/ac-binding-prune.js

@@ -202,8 +202,9 @@ export async function selectOrphanAcBindings(db) {
 /**
  * Infer the task that owned an orphan binding's AC.
  *
- * Only `satisfies:<source>-><target>#<ac>` atom ids name it (the target owns
- * the AC). Every other atom shape yields {@link UNKNOWN_BINDING_OWNER}.
+ * Only `satisfies:<source>-><target>#<ac>` and per-criterion receipt
+ * `receipt:<records>-><target>#<ac>` (T14199) atom ids name it (the target
+ * owns the AC). Every other atom shape yields {@link UNKNOWN_BINDING_OWNER}.
  *
  * @param binding - an orphan binding
  * @returns owning task id, or `'unknown'`
@@ -211,7 +212,7 @@ export async function selectOrphanAcBindings(db) {
  * @task T12790
  */
 export function inferBindingOwnerTask(binding) {
-    const match = /^satisfies:[^>]*->([^#]+)#/.exec(binding.evidenceAtomId);
+    const match = /^(?:satisfies|receipt):[^>]*->([^#]+)#/.exec(binding.evidenceAtomId);
     return match?.[1] ?? UNKNOWN_BINDING_OWNER;
 }
 /**

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package/dist/store/agent-api-key.d.ts

@@ -111,4 +111,3 @@ export interface AgentApiKeyRead {
  * @task T12352
  */
 export declare function openAgentApiKey(stored: string | null | undefined, agentId: string, options?: CredentialKeyOptions): Promise<AgentApiKeyRead>;
-//# sourceMappingURL=agent-api-key.d.ts.map

package/dist/store/agent-doctor.d.ts

@@ -137,4 +137,3 @@ export declare function buildDoctorReport(db: DatabaseSync, options?: BuildDocto
  * @task T889 / W2-7
  */
 export declare function reconcileDoctor(db: DatabaseSync, findings: AgentDoctorFinding[], options?: ReconcileDoctorOptions): Promise<ReconcileDoctorResult>;
-//# sourceMappingURL=agent-doctor.d.ts.map

package/dist/store/agent-install.d.ts

@@ -98,4 +98,3 @@ export interface InstallAgentFromCantResult {
  * @task T889 / W2-3
  */
 export declare function installAgentFromCant(db: DatabaseSync, input: InstallAgentFromCantInput): InstallAgentFromCantResult;
-//# sourceMappingURL=agent-install.d.ts.map

package/dist/store/agent-registry-accessor.d.ts

@@ -372,4 +372,3 @@ export declare class AgentRegistryAccessor implements AgentRegistryAPI {
     markUsed(agentId: string): Promise<void>;
 }
 export {};
-//# sourceMappingURL=agent-registry-accessor.d.ts.map

package/dist/store/agent-registry-store.d.ts

@@ -239,4 +239,3 @@ export declare function getGlobalAgentRegistryNativeDb(): DatabaseSync | null;
  * @epic T11249
  */
 export declare function _resetGlobalAgentRegistryDb_TESTING_ONLY(): void;
-//# sourceMappingURL=agent-registry-store.d.ts.map

package/dist/store/agent-resolver.d.ts

@@ -250,4 +250,3 @@ export declare function resolveDefaultSeedDir(): string;
  */
 export declare function resolveDefaultUniversalBasePath(): string | null;
 export {};
-//# sourceMappingURL=agent-resolver.d.ts.map

package/dist/store/api-key-kdf.d.ts

@@ -77,4 +77,3 @@ export declare function deriveApiKey(input: DeriveApiKeyInput): Buffer;
  * @epic T310
  */
 export declare function deriveLegacyProjectKey(machineKey: Buffer, projectPath: string): Buffer;
-//# sourceMappingURL=api-key-kdf.d.ts.map

package/dist/store/atomic.d.ts

@@ -24,6 +24,7 @@ export declare function safeReadFile(filePath: string): Promise<string | null>;
  */
 export declare function atomicWriteJson(filePath: string, data: unknown, options?: {
     indent?: number;
+    mode?: number;
 }): Promise<void>;
 /**
  * Atomic database migration result.
@@ -72,4 +73,3 @@ export declare function cleanupMigrationArtifacts(backupPath: string): Promise<b
  * @returns true if database is valid
  */
 export declare function validateSqliteDatabase(dbPath: string): Promise<boolean>;
-//# sourceMappingURL=atomic.d.ts.map

package/dist/store/atomic.js

@@ -48,7 +48,7 @@ export async function safeReadFile(filePath) {
  */
 export async function atomicWriteJson(filePath, data, options) {
     const json = JSON.stringify(data, null, options?.indent ?? 2) + '\n';
-    await atomicWrite(filePath, json);
+    await atomicWrite(filePath, json, { mode: options?.mode });
 }
 /**
  * Perform atomic database migration using rename operations.