@claude-flow/cli 3.32.34 → 3.32.36

package/node_modules/@claude-flow/codex/dist/generators/skill-md.js.map

@@ -1 +1 @@
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package/node_modules/@claude-flow/codex/dist/initializer.d.ts.map

@@ -1 +1 @@
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package/node_modules/@claude-flow/codex/dist/initializer.js

@@ -7,7 +7,7 @@ import fs from 'fs-extra';
 import path from 'path';
 import { fileURLToPath } from 'node:url';
 import { generateAgentsMd } from './generators/agents-md.js';
-import { generateSkillMd, generateBuiltInSkill } from './generators/skill-md.js';
+import { BUILT_IN_SKILL_NAMES, generateSkillMd, generateBuiltInSkill, } from './generators/skill-md.js';
 import { generateConfigToml } from './generators/config-toml.js';
 import { DEFAULT_SKILLS_BY_TEMPLATE, AGENTS_OVERRIDE_TEMPLATE, GITIGNORE_ENTRIES } from './templates/index.js';
 import { getRufloMcpAddCommand } from './mcp-config.js';
@@ -506,16 +506,8 @@ web_search = "live"
         }
         await fs.ensureDir(skillDir);
         // Check if it's a built-in skill
-        const builtInSkills = [
-            'swarm-orchestration',
-            'memory-management',
-            'sparc-methodology',
-            'security-audit',
-            'performance-analysis',
-            'github-automation',
-        ];
         let skillMd;
-        if (builtInSkills.includes(skillName)) {
+        if (BUILT_IN_SKILL_NAMES.includes(skillName)) {
             const result = await generateBuiltInSkill(skillName);
             skillMd = result.skillMd;
             // Also write any associated scripts or references
@@ -523,14 +515,18 @@ web_search = "live"
                 const scriptsDir = path.join(skillDir, 'scripts');
                 await fs.ensureDir(scriptsDir);
                 for (const [scriptName, scriptContent] of Object.entries(result.scripts)) {
-                    await fs.writeFile(path.join(scriptsDir, scriptName), scriptContent, 'utf-8');
+                    const scriptPath = path.join(scriptsDir, scriptName);
+                    await fs.ensureDir(path.dirname(scriptPath));
+                    await fs.writeFile(scriptPath, scriptContent, 'utf-8');
                 }
             }
             if (Object.keys(result.references).length > 0) {
-                const refsDir = path.join(skillDir, 'docs');
+                const refsDir = path.join(skillDir, 'references');
                 await fs.ensureDir(refsDir);
                 for (const [refName, refContent] of Object.entries(result.references)) {
-                    await fs.writeFile(path.join(refsDir, refName), refContent, 'utf-8');
+                    const referencePath = path.join(refsDir, refName);
+                    await fs.ensureDir(path.dirname(referencePath));
+                    await fs.writeFile(referencePath, refContent, 'utf-8');
                 }
             }
         }

package/node_modules/@claude-flow/codex/dist/initializer.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@claude-flow/cli",
-  "version": "3.32.34",
+  "version": "3.32.36",
   "type": "module",
   "description": "Ruflo CLI - Enterprise AI agent orchestration with 60+ specialized agents, swarm coordination, MCP server, self-learning hooks, and vector memory for Claude Code",
   "main": "dist/src/index.js",

package/plugins/ruflo-metaharness/scripts/_harness.mjs

@@ -279,6 +279,7 @@ export function rankSeverity(s) {
  *     harness mcp-scan — <path>
  *
  *       [INFO] No MCP security issues found
+ *       [LOW ] Padded severity labels are also emitted by newer releases
  *              Policy is default-deny with safe capability grants and an audit log.
  *
  *     Result: INFO (1 finding, 0 high)
@@ -293,7 +294,10 @@ export function parseMcpScanText(stdout) {
   const lines = (stdout || '').split('\n');
   let current = null;
   for (const line of lines) {
-    const m = /^\s*\[([A-Z]+)\]\s+(.+?)\s*$/.exec(line);
+    // metaharness <=0.3.0 emitted `[LOW]`; newer releases pad labels to a
+    // fixed-width column (`[LOW ]`). Accept optional whitespace before the
+    // closing bracket so both installed versions remain compatible.
+    const m = /^\s*\[([A-Z]+)\s*\]\s+(.+?)\s*$/.exec(line);
     if (m) {
       if (current) findings.push(current);
       current = { severity: m[1].toLowerCase(), message: m[2] };

package/plugins/ruflo-metaharness/scripts/_invoke.mjs

@@ -12,10 +12,9 @@
 //   - classifyDegraded()      timeout vs not-available distinction, per-package
 //                             reason prefix
 //   - injectJson()            append --json unless caller opted out / present
-//   - parseTrailingJson()     LAST-{...}-block extraction (the _darwin variant;
-//                             the old _harness FIRST-block variant was a live
-//                             bug — a progress line containing `{...}` would
-//                             shadow the final structured result)
+//   - parseTrailingJson()     complete trailing-object extraction (progress
+//                             lines before the JSON are ignored, while nested
+//                             objects remain part of the root payload)
 //   - ensureCachedInstall()   one-time `npm install --prefix ~/.ruflo/<name>-cache-<pin>`
 //                             of a PINNED range — generalizes _redblue.mjs /
 //                             gepa.mjs; the versioned dir means pin bumps
@@ -69,18 +68,18 @@ export function injectJson(args, wantJson) {
 
 /**
  * Parse the trailing JSON object from mixed stdout. CLIs in this family emit
- * human-readable progress first and a structured JSON object LAST — so grab
- * the last parseable {...} block, falling back to a greedy whole-span match
- * for nested objects the lazy regex fragments.
+ * human-readable progress first and a structured JSON object LAST.
+ *
+ * Trying candidate opening braces against the complete trailing substring is
+ * intentional. A regex that selects the "last parseable {...} block" returns
+ * the final nested finding from pretty-printed payloads instead of the root
+ * object, silently discarding findings[], worst, and other security fields.
  */
 export function parseTrailingJson(stdout) {
-  const s = stdout || '';
-  const matches = [...s.matchAll(/\{[\s\S]*?\}/g)];
-  for (let i = matches.length - 1; i >= 0; i--) {
-    try { return JSON.parse(matches[i][0]); } catch { /* try previous */ }
+  const s = String(stdout || '').trimEnd();
+  for (let i = s.lastIndexOf('{'); i >= 0; i = s.lastIndexOf('{', i - 1)) {
+    try { return JSON.parse(s.slice(i)); } catch { /* try the enclosing object */ }
   }
-  const greedy = /\{[\s\S]*\}/.exec(s);
-  if (greedy) { try { return JSON.parse(greedy[0]); } catch { return null; } }
   return null;
 }
 

package/plugins/ruflo-metaharness/scripts/mcp-scan.mjs

@@ -40,18 +40,17 @@ function main() {
   }
   const r = runHarness(['mcp-scan', ARGS.path]);
   if (r.degraded) { emitDegradedJsonAndExit(r.reason); return; }
-  if (r.exitCode !== 0 && r.exitCode !== 1) {
-    // exit 1 from harness can be "findings present"; only treat other
-    // non-zero as a real failure.
+  if (!r.json && r.exitCode !== 0 && r.exitCode !== 1) {
+    // Non-zero verdict exits are valid when accompanied by structured JSON.
+    // Without a payload, exit codes other than the historical findings=1
+    // remain invocation failures.
     console.error(`mcp-scan: harness exited ${r.exitCode}`);
     if (r.stderr) console.error(r.stderr.slice(0, 400));
     process.exit(2);
   }
-  // The JSON output shape from `harness mcp-scan` historically didn't
-  // include structured findings — it emits text even with --json. Parse
-  // the text into findings (iter 50) so audit-trend's introduced/cleared
-  // diff actually works. If a future upstream version DOES emit
-  // findings[], the parsed-text findings are overridden.
+  // Older `harness mcp-scan` releases emitted text even with --json. Keep
+  // the text parser as a backwards-compatible fallback, but prefer current
+  // structured findings when the upstream command supplies them.
   const parsed = parseMcpScanText(r.stdout);
   // iter 124 — normalize finding shape so consumers see a stable contract.
   // Upstream metaharness@0.1.x JSON path emits {id, severity, title, detail};

package/plugins/ruflo-metaharness/scripts/smoke.sh

@@ -253,6 +253,47 @@ grep -q "bin.harness" "$F" 2>/dev/null || miss="$miss no-harness-bin"
 grep -q "cwd: opts" "$F" || miss="$miss no-cwd-passthrough"
 [[ -z "$miss" ]] && ok || bad "$miss"
 
+step "17z80. HIGH security findings survive wrapper + composite boundaries (#2750)"
+miss=""
+SEC_FIXTURE=$(mktemp -d)
+mkdir -p "$SEC_FIXTURE/.harness" "$SEC_FIXTURE/.claude"
+printf '%s\n' '{"defaultDeny":false,"allowShell":true,"allowNetwork":true}' \
+  > "$SEC_FIXTURE/.harness/mcp-policy.json"
+printf '%s\n' '{"permissions":{"allow":["mcp__*"],"deny":[]},"mcpServers":{"x":{"command":"bash"}}}' \
+  > "$SEC_FIXTURE/.claude/settings.json"
+
+THREAT_OUT=$(node "$ROOT/scripts/threat-model.mjs" --path "$SEC_FIXTURE" --fail-on high --format json 2>/dev/null)
+THREAT_EXIT=$?
+SCAN_OUT=$(node "$ROOT/scripts/mcp-scan.mjs" --path "$SEC_FIXTURE" --fail-on high --format json 2>/dev/null)
+SCAN_EXIT=$?
+OIA_OUT=$(node "$ROOT/scripts/oia-audit.mjs" --path "$SEC_FIXTURE" --dry-run --format json 2>/dev/null)
+OIA_EXIT=$?
+
+[[ "$THREAT_EXIT" -eq 1 ]] || miss="$miss threat-exit-${THREAT_EXIT}"
+[[ "$SCAN_EXIT" -eq 1 ]] || miss="$miss scan-exit-${SCAN_EXIT}"
+[[ "$OIA_EXIT" -eq 0 ]] || miss="$miss oia-exit-${OIA_EXIT}"
+printf '%s' "$THREAT_OUT" | node -e '
+  let s=""; process.stdin.on("data",d=>s+=d); process.stdin.on("end",()=>{
+    try { const x=JSON.parse(s); if(x.worst!=="high" || !x.alert?.triggered || x.findings?.length<1) process.exitCode=1; }
+    catch { process.exitCode=1; }
+  });
+' || miss="$miss threat-lost-high"
+printf '%s' "$SCAN_OUT" | node -e '
+  let s=""; process.stdin.on("data",d=>s+=d); process.stdin.on("end",()=>{
+    try { const x=JSON.parse(s); if(x.worst!=="high" || !x.alert?.triggered || x.findings?.length<1) process.exitCode=1; }
+    catch { process.exitCode=1; }
+  });
+' || miss="$miss scan-lost-high"
+printf '%s' "$OIA_OUT" | node -e '
+  let s=""; process.stdin.on("data",d=>s+=d); process.stdin.on("end",()=>{
+    try { const x=JSON.parse(s); if(x.composite?.worst!=="high" || x.components?.mcpScan?.json?.findings?.length<1) process.exitCode=1; }
+    catch { process.exitCode=1; }
+  });
+' || miss="$miss oia-lost-high"
+rm -f "$SEC_FIXTURE/.harness/mcp-policy.json" "$SEC_FIXTURE/.claude/settings.json"
+rmdir "$SEC_FIXTURE/.harness" "$SEC_FIXTURE/.claude" "$SEC_FIXTURE"
+[[ -z "$miss" ]] && ok || bad "$miss"
+
 step "17z79. oia-audit-weekly.yml retains iter-108 hard-fail + iter-109 dispatch inputs (iter 116)"
 miss=""
 # Two load-bearing invariants accumulated in the weekly cron:
@@ -1398,9 +1439,24 @@ done
 grep -q "export function rankSeverity\|return SEVERITY_RANK\[.*\] ?? 0" "$HARNESS" 2>/dev/null || miss="$miss no-safe-rank-lookup"
 # Rationale documented at the new location
 grep -q "NaN-compare hazard" "$HARNESS" 2>/dev/null || miss="$miss no-rationale-comment"
-# Runtime: live oia-audit still produces clean (only INFO finding)
+# Runtime: the live audit produces a recognized severity. Repository contents
+# legitimately change the result (for example, current upstream reports LOW
+# for unpinned ranges), so "clean" is not a stable compatibility invariant.
 OUT=$(node "$OIA" --dry-run --format json 2>/dev/null)
-echo "$OUT" | grep -q '"worst": "clean"' || miss="$miss live-not-clean"
+printf '%s' "$OUT" | node -e '
+  let input = "";
+  process.stdin.on("data", chunk => { input += chunk; });
+  process.stdin.on("end", () => {
+    try {
+      const payload = JSON.parse(input);
+      if (payload.degraded === true) return;
+      const known = new Set(["clean", "info", "low", "medium", "warn", "high", "error", "critical"]);
+      if (!known.has(payload.composite?.worst)) process.exitCode = 1;
+    } catch {
+      process.exitCode = 1;
+    }
+  });
+' || miss="$miss live-invalid-worst"
 [[ -z "$miss" ]] && ok || bad "$miss"
 
 step "17z24. doctor required-files include iter-53 + iter-56 surfaces (iter 61)"

package/plugins/ruflo-metaharness/scripts/test-similarity.mjs

@@ -26,6 +26,7 @@ import {
 } from './_similarity.mjs';
 // iter 64 — also test the iter-63 shared severity primitives
 import { SEVERITY_RANK, rankSeverity, parseMcpScanText } from './_harness.mjs';
+import { parseTrailingJson } from './_invoke.mjs';
 
 const ARGS = (() => {
   const a = { format: 'table' };
@@ -273,6 +274,22 @@ assert(single.summary?.overallSeverity === 'info',
 assert(single.summary?.totalCount === 1,
   'summary.totalCount === 1 from "(1 finding,"');
 
+// Newer metaharness releases align severity labels to a fixed-width column.
+// Keep parsing the legacy compact form above while accepting `[LOW ]`.
+const padded = parseMcpScanText(`harness mcp-scan — /repo
+
+  [LOW ] 8 unpinned dependency range(s)
+         Floating ranges weaken supply-chain reproducibility.
+
+Result: LOW (1 finding, 0 high)
+`);
+assert(padded.findings.length === 1, 'padded [LOW ] block → 1 finding');
+assert(padded.findings[0].severity === 'low',
+  'padded severity lowercased without trailing whitespace');
+assert(padded.findings[0].message.includes('8 unpinned dependency range(s)') &&
+       padded.findings[0].message.includes('supply-chain reproducibility'),
+  'padded finding message and continuation extracted');
+
 // Continuation line — indented text appends to previous finding
 const cont = parseMcpScanText(`
   [HIGH] Exposed credential path
@@ -314,6 +331,27 @@ assert(mixed.findings.length === 1,
 assert(mixed.findings[0].severity === 'high',
   'strict regex captured the uppercase entry');
 
+console.log('\nPhase 11 — complete trailing JSON extraction');
+
+const nestedJson = parseTrailingJson(`progress: scanning {not-json}
+{
+  "dir": "/repo",
+  "findings": [
+    { "id": "allow-shell", "severity": "high" },
+    { "id": "no-audit-log", "severity": "medium" }
+  ],
+  "worst": "high"
+}
+`);
+assert(nestedJson?.dir === '/repo', 'mixed stdout returns root JSON object');
+assert(nestedJson?.findings?.length === 2,
+  'nested findings remain attached to root payload');
+assert(nestedJson?.findings?.[1]?.id === 'no-audit-log',
+  'extractor does not return the last nested object');
+assert(nestedJson?.worst === 'high', 'root-level severity is preserved');
+assert(parseTrailingJson('progress only {not-json}') === null,
+  'non-JSON progress braces return null');
+
 // ──────────────────────────────────────────────────────────────────
 const summary = {
   passed, failed,

package/plugins/ruflo-metaharness/scripts/threat-model.mjs

@@ -26,7 +26,10 @@ function main() {
   }
   const r = runHarness(['threat-model', ARGS.path]);
   if (r.degraded) { emitDegradedJsonAndExit(r.reason); return; }
-  if (r.exitCode !== 0 && r.exitCode !== 1) {
+  // Upstream uses exit 2 for a valid HIGH verdict. A parsed JSON payload is
+  // authoritative regardless of that domain exit code; only reject a
+  // non-zero invocation when it produced no structured result.
+  if (!r.json && r.exitCode !== 0 && r.exitCode !== 1) {
     console.error(`threat-model: harness exited ${r.exitCode}`);
     if (r.stderr) console.error(r.stderr.slice(0, 400));
     process.exit(2);