@claude-flow/cli 3.32.34 → 3.32.36

package/dist/src/init/helpers-generator.js

@@ -775,11 +775,22 @@ export function generateIntelligenceStub() {
         "const path = require('path');",
         "const os = require('os');",
         '',
-        "const DATA_DIR = path.join(process.cwd(), '.claude-flow', 'data');",
+        'function resolveProjectRoot(startDir) {',
+        '  if (process.env.CLAUDE_PROJECT_DIR) return path.resolve(process.env.CLAUDE_PROJECT_DIR);',
+        '  var dir = path.resolve(startDir || process.cwd());',
+        '  while (true) {',
+        '    if (fs.existsSync(path.join(dir, ".git")) || fs.existsSync(path.join(dir, ".claude-flow"))) return dir;',
+        '    var parent = path.dirname(dir);',
+        '    if (parent === dir) return path.resolve(startDir || process.cwd());',
+        '    dir = parent;',
+        '  }',
+        '}',
+        "const PROJECT_ROOT = resolveProjectRoot(process.cwd());",
+        "const DATA_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'data');",
         "const STORE_PATH = path.join(DATA_DIR, 'auto-memory-store.json');",
         "const RANKED_PATH = path.join(DATA_DIR, 'ranked-context.json');",
         "const PENDING_PATH = path.join(DATA_DIR, 'pending-insights.jsonl');",
-        "const SESSION_DIR = path.join(process.cwd(), '.claude-flow', 'sessions');",
+        "const SESSION_DIR = path.join(PROJECT_ROOT, '.claude-flow', 'sessions');",
         "const SESSION_FILE = path.join(SESSION_DIR, 'current.json');",
         '',
         'function ensureDir(dir) {',
@@ -823,8 +834,8 @@ export function generateIntelligenceStub() {
         '  var entries = [];',
         '  var candidates = [',
         '    path.join(os.homedir(), ".claude", "projects"),',
-        '    path.join(process.cwd(), ".claude-flow", "memory"),',
-        '    path.join(process.cwd(), ".claude", "memory"),',
+        '    path.join(PROJECT_ROOT, ".claude-flow", "memory"),',
+        '    path.join(PROJECT_ROOT, ".claude", "memory"),',
         '  ];',
         '  for (var i = 0; i < candidates.length; i++) {',
         '    try {',

package/dist/src/init/statusline-generator.js

@@ -53,6 +53,16 @@ function getInstalledCliVersionLocal() {
         return '0.0.0';
     }
 }
+function compareVersionsLocal(a, b) {
+    const pa = a.split(/[.-]/).map(part => Number.parseInt(part, 10) || 0);
+    const pb = b.split(/[.-]/).map(part => Number.parseInt(part, 10) || 0);
+    for (let i = 0; i < Math.max(pa.length, pb.length); i++) {
+        const delta = (pa[i] ?? 0) - (pb[i] ?? 0);
+        if (delta !== 0)
+            return delta;
+    }
+    return 0;
+}
 /**
  * Generate optimized statusline script
  * Output format:
@@ -91,10 +101,12 @@ export function generateStatuslineScript(options) {
     // getInstalledCliVersionLocal() above — reuse the pattern for the
     // same reason it exists there.
     let helperContent = null;
+    let helperPackageRoot = '';
     try {
         const esmRequire = createRequire(import.meta.url);
         const pkgJsonPath = esmRequire.resolve('@claude-flow/cli/package.json');
-        const helperPath = path.join(path.dirname(pkgJsonPath), '.claude', 'helpers', 'statusline.cjs');
+        helperPackageRoot = path.dirname(pkgJsonPath);
+        const helperPath = path.join(helperPackageRoot, '.claude', 'helpers', 'statusline.cjs');
         helperContent = fs.readFileSync(helperPath, 'utf-8');
     }
     catch {
@@ -105,6 +117,7 @@ export function generateStatuslineScript(options) {
                 if (pkg && pkg.name === '@claude-flow/cli') {
                     const candidate = path.join(dir, '.claude', 'helpers', 'statusline.cjs');
                     if (fs.existsSync(candidate)) {
+                        helperPackageRoot = dir;
                         helperContent = fs.readFileSync(candidate, 'utf-8');
                         break;
                     }
@@ -128,15 +141,15 @@ export function generateStatuslineScript(options) {
     // whatever the helper hard-codes) ships. Add a paired test in
     // statusline-cost-display.test.ts before changing either token.
     helperContent = helperContent.replace(/maxAgents: \d+,/, `maxAgents: ${maxAgents},`);
+    helperContent = helperContent.replace(/const BAKED_INSTALL_ROOT = "[^"]*";/, `const BAKED_INSTALL_ROOT = ${JSON.stringify(helperPackageRoot)};`);
     // Only overwrite the helper's baked version if OURS resolves higher.
     // Otherwise the substitution could DOWNGRADE (test environments where
     // esmRequire.resolve happens to hit an older node_modules install would
-    // clobber a fresh committed helper). Naive lexicographic compare — works
-    // for canonical semver strings with same-width digit parts, which is
-    // reliable at this stage of the version space.
+    // clobber a fresh committed helper). Compare numeric components:
+    // lexicographic comparison freezes 3.32.24 below 3.32.8 (#2811).
     const helperVerMatch = helperContent.match(/let ver = "([^"]+)";/);
     const helperVer = helperVerMatch ? helperVerMatch[1] : '';
-    if (!helperVer || bakedVersion > helperVer) {
+    if (!helperVer || compareVersionsLocal(bakedVersion, helperVer) > 0) {
         helperContent = helperContent.replace(/let ver = "[^"]+";/, `let ver = ${JSON.stringify(bakedVersion)};`);
     }
     return helperContent;

package/dist/src/mcp-server.d.ts

@@ -48,6 +48,31 @@ export interface MCPServerStatus {
         metrics?: Record<string, number>;
     };
 }
+export declare function parseMcpToolSelection(value: string | undefined): string[] | 'all';
+/**
+ * Apply the existing `--tools` contract to advertised schemas. A selector can
+ * be an exact tool name, a category, or a namespace prefix (`memory` matches
+ * `memory_store`). Execution remains registered internally; only the fixed
+ * per-request schema catalogue is reduced.
+ */
+export declare function filterAdvertisedMcpTools<T extends {
+    name: string;
+    category?: string;
+}>(tools: T[], selection: string[] | 'all'): T[];
+export interface McpSchemaOverhead {
+    toolCount: number;
+    bytes: number;
+    estimatedTokens: number;
+    contextWindowTokens?: number;
+    ratio?: number;
+    risk: 'normal' | 'high';
+}
+/** Conservative JSON-size estimate for the fixed tools/list catalogue. */
+export declare function assessMcpSchemaOverhead(tools: Array<{
+    name: string;
+    description?: string;
+    inputSchema?: unknown;
+}>, contextWindowTokens?: number): McpSchemaOverhead;
 /**
  * MCP Server Manager
  *

package/dist/src/mcp-server.js

@@ -42,6 +42,54 @@ const DEFAULT_OPTIONS = {
     daemonize: false,
     timeout: 30000,
 };
+export function parseMcpToolSelection(value) {
+    if (!value || value.trim().toLowerCase() === 'all')
+        return 'all';
+    const selectors = value.split(',').map((item) => item.trim()).filter(Boolean);
+    return selectors.length > 0 ? selectors : 'all';
+}
+/**
+ * Apply the existing `--tools` contract to advertised schemas. A selector can
+ * be an exact tool name, a category, or a namespace prefix (`memory` matches
+ * `memory_store`). Execution remains registered internally; only the fixed
+ * per-request schema catalogue is reduced.
+ */
+export function filterAdvertisedMcpTools(tools, selection) {
+    if (selection === 'all')
+        return tools;
+    const selectors = new Set(selection.map((item) => item.toLowerCase()));
+    return tools.filter((tool) => {
+        const name = tool.name.toLowerCase();
+        const category = tool.category?.toLowerCase();
+        return selectors.has(name)
+            || (category !== undefined && selectors.has(category))
+            || Array.from(selectors).some((selector) => name.startsWith(`${selector}_`));
+    });
+}
+/** Conservative JSON-size estimate for the fixed tools/list catalogue. */
+export function assessMcpSchemaOverhead(tools, contextWindowTokens) {
+    const catalogue = tools.map((tool) => ({
+        name: tool.name,
+        description: tool.description,
+        inputSchema: tool.inputSchema,
+    }));
+    const bytes = Buffer.byteLength(JSON.stringify(catalogue), 'utf8');
+    const estimatedTokens = Math.ceil(bytes / 4);
+    const validWindow = Number.isFinite(contextWindowTokens) && Number(contextWindowTokens) > 0
+        ? Number(contextWindowTokens)
+        : undefined;
+    const ratio = validWindow ? estimatedTokens / validWindow : undefined;
+    return {
+        toolCount: tools.length,
+        bytes,
+        estimatedTokens,
+        ...(validWindow === undefined ? {} : { contextWindowTokens: validWindow }),
+        ...(ratio === undefined ? {} : { ratio }),
+        risk: (ratio !== undefined ? ratio >= 0.2 : estimatedTokens >= 8_000)
+            ? 'high'
+            : 'normal',
+    };
+}
 /**
  * MCP Server Manager
  *
@@ -55,7 +103,14 @@ export class MCPServerManager extends EventEmitter {
     healthCheckInterval;
     constructor(options = {}) {
         super();
-        this.options = { ...DEFAULT_OPTIONS, ...options };
+        // `options.tools`, populated by the `mcp start --tools` CLI flag, is
+        // spread last below and therefore takes precedence over this env fallback.
+        const environmentTools = parseMcpToolSelection(process.env.CLAUDE_FLOW_MCP_TOOLS);
+        this.options = {
+            ...DEFAULT_OPTIONS,
+            ...(environmentTools === 'all' ? {} : { tools: environmentTools }),
+            ...options,
+        };
     }
     /**
      * Start the MCP server
@@ -420,7 +475,7 @@ export class MCPServerManager extends EventEmitter {
                         },
                     };
                 case 'tools/list':
-                    const tools = listMCPTools();
+                    const tools = filterAdvertisedMcpTools(listMCPTools(), this.options.tools);
                     return {
                         jsonrpc: '2.0',
                         id: message.id,

package/dist/src/mcp-tools/agent-tools.js

@@ -9,6 +9,7 @@ import { join } from 'node:path';
 import { getProjectCwd } from './types.js';
 import { validateIdentifier, validateText, validateAgentSpawn } from './validate-input.js';
 import { executeAgentTask } from './agent-execute-core.js';
+import { pheromoneAgentEligibility } from './swarm-tools.js';
 // Storage paths
 const STORAGE_DIR = '.claude-flow';
 const AGENT_DIR = 'agents';
@@ -383,6 +384,15 @@ export const agentTools = [
             const vP = validateText(input.prompt, 'prompt');
             if (!vP.valid)
                 return { success: false, error: `Input validation failed: ${vP.error}` };
+            const pheromone = pheromoneAgentEligibility(input.agentId);
+            if (!pheromone.eligible) {
+                return {
+                    success: false,
+                    agentId: input.agentId,
+                    suspended: true,
+                    error: pheromone.reason,
+                };
+            }
             // Delegate to the shared core (also used by the workflow runtime).
             return executeAgentTask({
                 agentId: input.agentId,

package/dist/src/mcp-tools/embeddings-tools.js

@@ -50,13 +50,16 @@ async function getRealEmbeddingFunction() {
     }
     return realEmbeddingFn;
 }
-// Generate real ONNX embedding (falls back to deterministic hash if ONNX unavailable)
 async function generateRealEmbedding(text, dimension) {
     const realFn = await getRealEmbeddingFunction();
     if (realFn) {
         try {
             const result = await realFn(text);
-            return result.embedding;
+            return {
+                embedding: result.embedding,
+                backend: result.backend ?? 'onnx',
+                model: result.model,
+            };
         }
         catch {
             // Fall through to fallback
@@ -75,7 +78,11 @@ async function generateRealEmbedding(text, dimension) {
     }
     // L2 normalize
     const norm = Math.sqrt(embedding.reduce((sum, x) => sum + x * x, 0));
-    return embedding.map(x => x / norm);
+    return {
+        embedding: embedding.map(x => x / norm),
+        backend: 'mock',
+        model: 'hash-fallback',
+    };
 }
 // Convert Euclidean embedding to Poincaré ball
 function toPoincare(euclidean, curvature) {
@@ -238,7 +245,8 @@ export const embeddingsTools = [
             }
             const useHyperbolic = input.hyperbolic === true && config.hyperbolic.enabled;
             // Generate real ONNX embedding
-            const embedding = await generateRealEmbedding(text, config.dimension);
+            const generated = await generateRealEmbedding(text, config.dimension);
+            const embedding = generated.embedding;
             let result;
             let geometry;
             if (useHyperbolic) {
@@ -254,6 +262,8 @@ export const embeddingsTools = [
                 embedding: result,
                 metadata: {
                     model: config.model,
+                    embeddingBackend: generated.backend,
+                    semanticGrounded: generated.backend === 'onnx',
                     dimension: config.dimension,
                     geometry,
                     curvature: useHyperbolic ? config.hyperbolic.curvature : null,
@@ -309,10 +319,13 @@ export const embeddingsTools = [
                     return { success: false, error: v.error };
             }
             // Generate real ONNX embeddings for both texts
-            const [emb1, emb2] = await Promise.all([
+            const [generated1, generated2] = await Promise.all([
                 generateRealEmbedding(text1, config.dimension),
                 generateRealEmbedding(text2, config.dimension)
             ]);
+            const emb1 = generated1.embedding;
+            const emb2 = generated2.embedding;
+            const embeddingBackend = generated1.backend === 'onnx' && generated2.backend === 'onnx' ? 'onnx' : 'mock';
             let similarity;
             let distance;
             switch (metric) {
@@ -341,14 +354,21 @@ export const embeddingsTools = [
                 similarity,
                 distance,
                 metric,
+                embeddingBackend,
+                semanticGrounded: embeddingBackend === 'onnx',
                 texts: {
                     text1: { length: text1.length, preview: text1.slice(0, 50) },
                     text2: { length: text2.length, preview: text2.slice(0, 50) },
                 },
-                interpretation: similarity > 0.8 ? 'very similar' :
-                    similarity > 0.6 ? 'similar' :
-                        similarity > 0.4 ? 'somewhat similar' :
-                            similarity > 0.2 ? 'different' : 'very different',
+                interpretation: embeddingBackend === 'onnx'
+                    ? similarity > 0.8 ? 'very similar'
+                        : similarity > 0.6 ? 'similar'
+                            : similarity > 0.4 ? 'somewhat similar'
+                                : similarity > 0.2 ? 'different' : 'very different'
+                    : null,
+                warning: embeddingBackend === 'mock'
+                    ? 'Hash fallback scores are deterministic but not semantically meaningful.'
+                    : undefined,
             };
         },
     },
@@ -426,6 +446,8 @@ export const embeddingsTools = [
                     })),
                     metadata: {
                         model: config.model,
+                        embeddingBackend: queryEmbedding.backend,
+                        semanticGrounded: queryEmbedding.backend === 'onnx',
                         topK,
                         threshold,
                         namespace: namespace || 'all',
@@ -433,6 +455,9 @@ export const embeddingsTools = [
                         indexType: config.hyperbolic.enabled ? 'HNSW (hyperbolic)' : 'HNSW (euclidean)',
                         resultCount: searchResult.results.length
                     },
+                    warning: queryEmbedding.backend === 'mock'
+                        ? 'Results use a hash fallback and are not semantically ranked.'
+                        : undefined,
                 };
             }
             catch {
@@ -444,12 +469,17 @@ export const embeddingsTools = [
                     results: [],
                     metadata: {
                         model: config.model,
+                        embeddingBackend: queryEmbedding.backend,
+                        semanticGrounded: queryEmbedding.backend === 'onnx',
                         topK,
                         threshold,
                         namespace: namespace || 'all',
                         searchTime: `${searchTime}ms`,
                         indexType: config.hyperbolic.enabled ? 'HNSW (hyperbolic)' : 'HNSW (euclidean)',
                     },
+                    warning: queryEmbedding.backend === 'mock'
+                        ? 'Hash fallback is active; semantic search is unavailable.'
+                        : undefined,
                     message: 'No embeddings indexed yet. Use memory store to add documents.',
                 };
             }
@@ -795,6 +825,8 @@ export const embeddingsTools = [
             }
             catch { /* not installed */ }
             const ruvectorEnabled = config.neural.ruvector?.enabled ?? false;
+            const backendProbe = await generateRealEmbedding('ruflo embedding backend probe', config.dimension);
+            const semanticGrounded = backendProbe.backend === 'onnx';
             return {
                 success: true,
                 initialized: true,
@@ -822,11 +854,20 @@ export const embeddingsTools = [
                     models: config.modelPath,
                 },
                 initializedAt: config.initialized,
+                embeddingBackend: backendProbe.backend,
+                semanticGrounded,
+                warning: semanticGrounded
+                    ? undefined
+                    : 'Hash fallback is active. Similarity scores are deterministic but not semantically meaningful.',
                 capabilities: {
                     onnxModels: ['Xenova/all-MiniLM-L6-v2', 'Xenova/all-mpnet-base-v2'],
                     geometries: ['euclidean', 'poincare'],
                     normalizations: ['L2', 'L1', 'minmax', 'zscore'],
-                    features: ['semantic search', 'hyperbolic projection', 'neural substrate'],
+                    features: [
+                        ...(semanticGrounded ? ['semantic search'] : []),
+                        'hyperbolic projection',
+                        'neural substrate',
+                    ],
                 },
             };
         },