@cirrobio/api-client 0.4.3 → 0.9.1

package/dist/esm/models/Executor.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ * How the workflow is executed
+ * @export
+ * @enum {string}
+ */
+export declare enum Executor {
+    Ingest = "INGEST",
+    Nextflow = "NEXTFLOW",
+    Cromwell = "CROMWELL",
+    OmicsReady2Run = "OMICS_READY2RUN"
+}
+export declare function ExecutorFromJSON(json: any): Executor;
+export declare function ExecutorFromJSONTyped(json: any, ignoreDiscriminator: boolean): Executor;
+export declare function ExecutorToJSON(value?: Executor | null): any;

package/{src/models/Executor.ts → dist/esm/models/Executor.js}

@@ -11,29 +11,24 @@
  * https://openapi-generator.tech
  * Do not edit the class manually.
  */
-
 /**
  * How the workflow is executed
  * @export
  * @enum {string}
  */
-export enum Executor {
-    Ingest = 'INGEST',
-    Nextflow = 'NEXTFLOW',
-    Cromwell = 'CROMWELL',
-    OmicsReady2Run = 'OMICS_READY2RUN'
-}
-
-
-export function ExecutorFromJSON(json: any): Executor {
+export var Executor;
+(function (Executor) {
+    Executor["Ingest"] = "INGEST";
+    Executor["Nextflow"] = "NEXTFLOW";
+    Executor["Cromwell"] = "CROMWELL";
+    Executor["OmicsReady2Run"] = "OMICS_READY2RUN";
+})(Executor || (Executor = {}));
+export function ExecutorFromJSON(json) {
     return ExecutorFromJSONTyped(json, false);
 }
-
-export function ExecutorFromJSONTyped(json: any, ignoreDiscriminator: boolean): Executor {
-    return json as Executor;
+export function ExecutorFromJSONTyped(json, ignoreDiscriminator) {
+    return json;
 }
-
-export function ExecutorToJSON(value?: Executor | null): any {
-    return value as any;
+export function ExecutorToJSON(value) {
+    return value;
 }
-

package/dist/esm/models/FeatureFlags.d.ts

@@ -0,0 +1,43 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface FeatureFlags
+ */
+export interface FeatureFlags {
+    /**
+     *
+     * @type {boolean}
+     * @memberof FeatureFlags
+     */
+    sftpEnabled: boolean;
+    /**
+     *
+     * @type {boolean}
+     * @memberof FeatureFlags
+     */
+    governanceEnabled: boolean;
+    /**
+     *
+     * @type {boolean}
+     * @memberof FeatureFlags
+     */
+    projectRequestsEnabled: boolean;
+}
+/**
+ * Check if a given object implements the FeatureFlags interface.
+ */
+export declare function instanceOfFeatureFlags(value: object): boolean;
+export declare function FeatureFlagsFromJSON(json: any): FeatureFlags;
+export declare function FeatureFlagsFromJSONTyped(json: any, ignoreDiscriminator: boolean): FeatureFlags;
+export declare function FeatureFlagsToJSON(value?: FeatureFlags | null): any;

package/{src/models/FeatureFlags.ts → dist/esm/models/FeatureFlags.js}

@@ -11,63 +11,30 @@
  * https://openapi-generator.tech
  * Do not edit the class manually.
  */
-
-import { exists, mapValues } from '../runtime';
-/**
- * 
- * @export
- * @interface FeatureFlags
- */
-export interface FeatureFlags {
-    /**
-     * 
-     * @type {boolean}
-     * @memberof FeatureFlags
-     */
-    sftpEnabled: boolean;
-    /**
-     * 
-     * @type {boolean}
-     * @memberof FeatureFlags
-     */
-    governanceEnabled: boolean;
-    /**
-     * 
-     * @type {boolean}
-     * @memberof FeatureFlags
-     */
-    projectRequestsEnabled: boolean;
-}
-
 /**
  * Check if a given object implements the FeatureFlags interface.
  */
-export function instanceOfFeatureFlags(value: object): boolean {
+export function instanceOfFeatureFlags(value) {
     let isInstance = true;
     isInstance = isInstance && "sftpEnabled" in value;
     isInstance = isInstance && "governanceEnabled" in value;
     isInstance = isInstance && "projectRequestsEnabled" in value;
-
     return isInstance;
 }
-
-export function FeatureFlagsFromJSON(json: any): FeatureFlags {
+export function FeatureFlagsFromJSON(json) {
     return FeatureFlagsFromJSONTyped(json, false);
 }
-
-export function FeatureFlagsFromJSONTyped(json: any, ignoreDiscriminator: boolean): FeatureFlags {
+export function FeatureFlagsFromJSONTyped(json, ignoreDiscriminator) {
     if ((json === undefined) || (json === null)) {
         return json;
     }
     return {
-        
         'sftpEnabled': json['sftpEnabled'],
         'governanceEnabled': json['governanceEnabled'],
         'projectRequestsEnabled': json['projectRequestsEnabled'],
     };
 }
-
-export function FeatureFlagsToJSON(value?: FeatureFlags | null): any {
+export function FeatureFlagsToJSON(value) {
     if (value === undefined) {
         return undefined;
     }
@@ -75,10 +42,8 @@ export function FeatureFlagsToJSON(value?: FeatureFlags | null): any {
         return null;
     }
     return {
-        
         'sftpEnabled': value.sftpEnabled,
         'governanceEnabled': value.governanceEnabled,
         'projectRequestsEnabled': value.projectRequestsEnabled,
     };
 }
-

package/dist/esm/models/FileEntry.d.ts

@@ -0,0 +1,45 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface FileEntry
+ */
+export interface FileEntry {
+    /**
+     * Relative path to file
+     * @type {string}
+     * @memberof FileEntry
+     */
+    path?: string;
+    /**
+     * File size (in bytes)
+     * @type {number}
+     * @memberof FileEntry
+     */
+    size?: number;
+    /**
+     * Metadata associated with the file
+     * @type {{ [key: string]: string; }}
+     * @memberof FileEntry
+     */
+    metadata?: {
+        [key: string]: string;
+    };
+}
+/**
+ * Check if a given object implements the FileEntry interface.
+ */
+export declare function instanceOfFileEntry(value: object): boolean;
+export declare function FileEntryFromJSON(json: any): FileEntry;
+export declare function FileEntryFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileEntry;
+export declare function FileEntryToJSON(value?: FileEntry | null): any;

package/{src/models/FileEntry.ts → dist/esm/models/FileEntry.js}

@@ -11,60 +11,28 @@
  * https://openapi-generator.tech
  * Do not edit the class manually.
  */
-
-import { exists, mapValues } from '../runtime';
-/**
- * 
- * @export
- * @interface FileEntry
- */
-export interface FileEntry {
-    /**
-     * Relative path to file
-     * @type {string}
-     * @memberof FileEntry
-     */
-    path?: string;
-    /**
-     * File size (in bytes)
-     * @type {number}
-     * @memberof FileEntry
-     */
-    size?: number;
-    /**
-     * Metadata associated with the file
-     * @type {{ [key: string]: string; }}
-     * @memberof FileEntry
-     */
-    metadata?: { [key: string]: string; };
-}
-
+import { exists } from '../runtime';
 /**
  * Check if a given object implements the FileEntry interface.
  */
-export function instanceOfFileEntry(value: object): boolean {
+export function instanceOfFileEntry(value) {
     let isInstance = true;
-
     return isInstance;
 }
-
-export function FileEntryFromJSON(json: any): FileEntry {
+export function FileEntryFromJSON(json) {
     return FileEntryFromJSONTyped(json, false);
 }
-
-export function FileEntryFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileEntry {
+export function FileEntryFromJSONTyped(json, ignoreDiscriminator) {
     if ((json === undefined) || (json === null)) {
         return json;
     }
     return {
-        
         'path': !exists(json, 'path') ? undefined : json['path'],
         'size': !exists(json, 'size') ? undefined : json['size'],
         'metadata': !exists(json, 'metadata') ? undefined : json['metadata'],
     };
 }
-
-export function FileEntryToJSON(value?: FileEntry | null): any {
+export function FileEntryToJSON(value) {
     if (value === undefined) {
         return undefined;
     }
@@ -72,10 +40,8 @@ export function FileEntryToJSON(value?: FileEntry | null): any {
         return null;
     }
     return {
-        
         'path': value.path,
         'size': value.size,
         'metadata': value.metadata,
     };
 }
-

package/dist/esm/models/FileMappingRule.d.ts

@@ -0,0 +1,56 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+import type { FileNamePattern } from './FileNamePattern';
+/**
+ *
+ * @export
+ * @interface FileMappingRule
+ */
+export interface FileMappingRule {
+    /**
+     * Describes the group of possible files that meet a single file type criteria.
+     * @type {string}
+     * @memberof FileMappingRule
+     */
+    description: string;
+    /**
+     * Minimum number of files to expect for the file type group.
+     * @type {number}
+     * @memberof FileMappingRule
+     */
+    min?: number;
+    /**
+     * Maximum number of files to expect for the file type group.
+     * @type {number}
+     * @memberof FileMappingRule
+     */
+    max?: number;
+    /**
+     * Specifies if the file type will be associated with a sample.
+     * @type {boolean}
+     * @memberof FileMappingRule
+     */
+    isSample?: boolean;
+    /**
+     * Describes the possible file patterns to expect for the file type group.
+     * @type {Array<FileNamePattern>}
+     * @memberof FileMappingRule
+     */
+    fileNamePatterns: Array<FileNamePattern>;
+}
+/**
+ * Check if a given object implements the FileMappingRule interface.
+ */
+export declare function instanceOfFileMappingRule(value: object): boolean;
+export declare function FileMappingRuleFromJSON(json: any): FileMappingRule;
+export declare function FileMappingRuleFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileMappingRule;
+export declare function FileMappingRuleToJSON(value?: FileMappingRule | null): any;

package/dist/esm/models/FileMappingRule.js

@@ -0,0 +1,54 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+import { exists } from '../runtime';
+import { FileNamePatternFromJSON, FileNamePatternToJSON, } from './FileNamePattern';
+/**
+ * Check if a given object implements the FileMappingRule interface.
+ */
+export function instanceOfFileMappingRule(value) {
+    let isInstance = true;
+    isInstance = isInstance && "description" in value;
+    isInstance = isInstance && "fileNamePatterns" in value;
+    return isInstance;
+}
+export function FileMappingRuleFromJSON(json) {
+    return FileMappingRuleFromJSONTyped(json, false);
+}
+export function FileMappingRuleFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'description': json['description'],
+        'min': !exists(json, 'min') ? undefined : json['min'],
+        'max': !exists(json, 'max') ? undefined : json['max'],
+        'isSample': !exists(json, 'isSample') ? undefined : json['isSample'],
+        'fileNamePatterns': (json['fileNamePatterns'].map(FileNamePatternFromJSON)),
+    };
+}
+export function FileMappingRuleToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'description': value.description,
+        'min': value.min,
+        'max': value.max,
+        'isSample': value.isSample,
+        'fileNamePatterns': (value.fileNamePatterns.map(FileNamePatternToJSON)),
+    };
+}

package/dist/esm/models/FileNamePattern.d.ts

@@ -0,0 +1,43 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface FileNamePattern
+ */
+export interface FileNamePattern {
+    /**
+     * User-readable name for the file type used for display.
+     * @type {string}
+     * @memberof FileNamePattern
+     */
+    exampleName: string;
+    /**
+     * File description.
+     * @type {string}
+     * @memberof FileNamePattern
+     */
+    description: string;
+    /**
+     * File name pattern, formatted as a valid regex, to extract sample name and other metadata.
+     * @type {string}
+     * @memberof FileNamePattern
+     */
+    sampleMatchingPattern: string;
+}
+/**
+ * Check if a given object implements the FileNamePattern interface.
+ */
+export declare function instanceOfFileNamePattern(value: object): boolean;
+export declare function FileNamePatternFromJSON(json: any): FileNamePattern;
+export declare function FileNamePatternFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileNamePattern;
+export declare function FileNamePatternToJSON(value?: FileNamePattern | null): any;

package/{src/models/FileNamePattern.ts → dist/esm/models/FileNamePattern.js}

@@ -11,63 +11,30 @@
  * https://openapi-generator.tech
  * Do not edit the class manually.
  */
-
-import { exists, mapValues } from '../runtime';
-/**
- * 
- * @export
- * @interface FileNamePattern
- */
-export interface FileNamePattern {
-    /**
-     * User-readable name for the file type used for display.
-     * @type {string}
-     * @memberof FileNamePattern
-     */
-    exampleName: string;
-    /**
-     * File description.
-     * @type {string}
-     * @memberof FileNamePattern
-     */
-    description: string;
-    /**
-     * File name pattern, formatted as a valid regex, to extract sample name and other metadata.
-     * @type {string}
-     * @memberof FileNamePattern
-     */
-    sampleMatchingPattern: string;
-}
-
 /**
  * Check if a given object implements the FileNamePattern interface.
  */
-export function instanceOfFileNamePattern(value: object): boolean {
+export function instanceOfFileNamePattern(value) {
     let isInstance = true;
     isInstance = isInstance && "exampleName" in value;
     isInstance = isInstance && "description" in value;
     isInstance = isInstance && "sampleMatchingPattern" in value;
-
     return isInstance;
 }
-
-export function FileNamePatternFromJSON(json: any): FileNamePattern {
+export function FileNamePatternFromJSON(json) {
     return FileNamePatternFromJSONTyped(json, false);
 }
-
-export function FileNamePatternFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileNamePattern {
+export function FileNamePatternFromJSONTyped(json, ignoreDiscriminator) {
     if ((json === undefined) || (json === null)) {
         return json;
     }
     return {
-        
         'exampleName': json['exampleName'],
         'description': json['description'],
         'sampleMatchingPattern': json['sampleMatchingPattern'],
     };
 }
-
-export function FileNamePatternToJSON(value?: FileNamePattern | null): any {
+export function FileNamePatternToJSON(value) {
     if (value === undefined) {
         return undefined;
     }
@@ -75,10 +42,8 @@ export function FileNamePatternToJSON(value?: FileNamePattern | null): any {
         return null;
     }
     return {
-        
         'exampleName': value.exampleName,
         'description': value.description,
         'sampleMatchingPattern': value.sampleMatchingPattern,
     };
 }
-

package/dist/esm/models/FileRequirements.d.ts

@@ -0,0 +1,44 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+import type { AllowedDataType } from './AllowedDataType';
+/**
+ *
+ * @export
+ * @interface FileRequirements
+ */
+export interface FileRequirements {
+    /**
+     *
+     * @type {Array<string>}
+     * @memberof FileRequirements
+     */
+    files: Array<string>;
+    /**
+     *
+     * @type {string}
+     * @memberof FileRequirements
+     */
+    errorMsg: string;
+    /**
+     *
+     * @type {Array<AllowedDataType>}
+     * @memberof FileRequirements
+     */
+    allowedDataTypes: Array<AllowedDataType>;
+}
+/**
+ * Check if a given object implements the FileRequirements interface.
+ */
+export declare function instanceOfFileRequirements(value: object): boolean;
+export declare function FileRequirementsFromJSON(json: any): FileRequirements;
+export declare function FileRequirementsFromJSONTyped(json: any, ignoreDiscriminator: boolean): FileRequirements;
+export declare function FileRequirementsToJSON(value?: FileRequirements | null): any;

package/dist/esm/models/FileRequirements.js

@@ -0,0 +1,50 @@
+/* tslint:disable */
+/* eslint-disable */
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+import { AllowedDataTypeFromJSON, AllowedDataTypeToJSON, } from './AllowedDataType';
+/**
+ * Check if a given object implements the FileRequirements interface.
+ */
+export function instanceOfFileRequirements(value) {
+    let isInstance = true;
+    isInstance = isInstance && "files" in value;
+    isInstance = isInstance && "errorMsg" in value;
+    isInstance = isInstance && "allowedDataTypes" in value;
+    return isInstance;
+}
+export function FileRequirementsFromJSON(json) {
+    return FileRequirementsFromJSONTyped(json, false);
+}
+export function FileRequirementsFromJSONTyped(json, ignoreDiscriminator) {
+    if ((json === undefined) || (json === null)) {
+        return json;
+    }
+    return {
+        'files': json['files'],
+        'errorMsg': json['errorMsg'],
+        'allowedDataTypes': (json['allowedDataTypes'].map(AllowedDataTypeFromJSON)),
+    };
+}
+export function FileRequirementsToJSON(value) {
+    if (value === undefined) {
+        return undefined;
+    }
+    if (value === null) {
+        return null;
+    }
+    return {
+        'files': value.files,
+        'errorMsg': value.errorMsg,
+        'allowedDataTypes': (value.allowedDataTypes.map(AllowedDataTypeToJSON)),
+    };
+}

package/dist/esm/models/FormSchema.d.ts

@@ -0,0 +1,41 @@
+/**
+ * Cirro Data
+ * Cirro Data Platform service API
+ *
+ * The version of the OpenAPI document: latest
+ * Contact: support@cirro.bio
+ *
+ * NOTE: This class is auto generated by OpenAPI Generator (https://openapi-generator.tech).
+ * https://openapi-generator.tech
+ * Do not edit the class manually.
+ */
+/**
+ *
+ * @export
+ * @interface FormSchema
+ */
+export interface FormSchema {
+    /**
+     * JSONSchema representation of the parameters
+     * @type {{ [key: string]: any; }}
+     * @memberof FormSchema
+     */
+    form?: {
+        [key: string]: any;
+    };
+    /**
+     * Describes how the form should be rendered, see rjsf
+     * @type {{ [key: string]: any; }}
+     * @memberof FormSchema
+     */
+    ui?: {
+        [key: string]: any;
+    };
+}
+/**
+ * Check if a given object implements the FormSchema interface.
+ */
+export declare function instanceOfFormSchema(value: object): boolean;
+export declare function FormSchemaFromJSON(json: any): FormSchema;
+export declare function FormSchemaFromJSONTyped(json: any, ignoreDiscriminator: boolean): FormSchema;
+export declare function FormSchemaToJSON(value?: FormSchema | null): any;