@bastani/atomic 0.9.28-alpha.2 → 0.9.28-alpha.3

package/dist/cli/args.d.ts.map

@@ -1 +1 @@
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package/dist/cli/args.js

@@ -3,6 +3,7 @@
  */
 import chalk from "chalk";
 import { APP_NAME, CONFIG_DIR_NAME, ENV_AGENT_DIR, ENV_OFFLINE, ENV_PACKAGE_DIR, ENV_SESSION_DIR, ENV_SHARE_VIEWER_URL, ENV_TELEMETRY, } from "../config.js";
+import { getToolListError } from "../core/settings-merge.js";
 const VALID_THINKING_LEVELS = ["off", "minimal", "low", "medium", "high", "xhigh", "max"];
 export function isValidThinkingLevel(level) {
     return VALID_THINKING_LEVELS.includes(level);
@@ -112,10 +113,15 @@ export function parseArgs(args) {
             result.noBuiltinTools = true;
         }
         else if ((arg === "--tools" || arg === "-t") && i + 1 < args.length) {
-            result.tools = args[++i]
+            const tools = args[++i]
                 .split(",")
                 .map((s) => s.trim())
                 .filter((name) => name.length > 0);
+            const error = getToolListError(tools);
+            if (error)
+                result.diagnostics.push({ type: "error", message: `${arg}: ${error}` });
+            else
+                result.tools = tools;
         }
         else if ((arg === "--exclude-tools" || arg === "-xt") && i + 1 < args.length) {
             result.excludeTools = args[++i]
@@ -288,6 +294,7 @@ ${chalk.bold("Options:")}
   --no-builtin-tools, -nbt       Disable built-in tools by default but keep extension/custom tools enabled
   --tools, -t <tools>            Comma-separated allowlist of tool names or patterns (*)
                                  Keeps MCP tools unless an entry starts with mcp__
+                                 Only +name/-name entries change the default selection
   --exclude-tools, -xt <tools>   Comma-separated denylist of tool names or patterns (*), including MCP tools
                                  Intercom follows the allowlist and exclusions
   --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh, max

package/dist/cli/args.js.map

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Valid values: text, json, rpc`,\n\t\t\t\t});\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tresult.mode = mode;\n\t\t} else if (arg === \"--continue\" || arg === \"-c\") {\n\t\t\tresult.continue = true;\n\t\t} else if (arg === \"--resume\" || arg === \"-r\") {\n\t\t\tresult.resume = true;\n\t\t} else if (arg === \"--provider\" && i + 1 < args.length) {\n\t\t\tresult.provider = args[++i];\n\t\t} else if (arg === \"--model\" && i + 1 < args.length) {\n\t\t\tresult.model = args[++i];\n\t\t} else if (arg === \"--api-key\" && i + 1 < args.length) {\n\t\t\tresult.apiKey = args[++i];\n\t\t} else if (arg === \"--system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.systemPrompt = args[++i];\n\t\t} else if (arg === \"--append-system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.appendSystemPrompt = result.appendSystemPrompt ?? 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[];\n\t\t\tresult.skills.push(args[++i]);\n\t\t} else if (arg === \"--prompt-template\" && i + 1 < args.length) {\n\t\t\tresult.promptTemplates = result.promptTemplates ?? [];\n\t\t\tresult.promptTemplates.push(args[++i]);\n\t\t} else if (arg === \"--theme\" && i + 1 < args.length) {\n\t\t\tresult.themes = result.themes ?? [];\n\t\t\tresult.themes.push(args[++i]);\n\t\t} else if (arg === \"--use-theme\") {\n\t\t\tconst themeName = args[i + 1];\n\t\t\tif (themeName === undefined || themeName.startsWith(\"-\")) {\n\t\t\t\tresult.diagnostics.push({ type: \"error\", message: \"--use-theme requires a theme name\" });\n\t\t\t} else {\n\t\t\t\tresult.useTheme = themeName;\n\t\t\t\ti++;\n\t\t\t}\n\t\t} else if (arg === \"--no-skills\" || arg === \"-ns\") {\n\t\t\tresult.noSkills = true;\n\t\t} else if (arg === \"--no-prompt-templates\" || arg === \"-np\") {\n\t\t\tresult.noPromptTemplates = true;\n\t\t} else if (arg === \"--no-themes\") {\n\t\t\tresult.noThemes = true;\n\t\t} else if (arg === \"--no-context-files\" || arg === \"-nc\") {\n\t\t\tresult.noContextFiles = true;\n\t\t} else if (arg === \"--list-models\") {\n\t\t\t// Check if next arg is a search pattern (not a flag or file arg)\n\t\t\tif (i + 1 < args.length && !args[i + 1].startsWith(\"-\") && !args[i + 1].startsWith(\"@\")) {\n\t\t\t\tresult.listModels = args[++i];\n\t\t\t} else {\n\t\t\t\tresult.listModels = true;\n\t\t\t}\n\t\t} else if (arg === \"--verbose\") {\n\t\t\tresult.verbose = true;\n\t\t} else if (arg === \"--approve\" || arg === \"-a\") {\n\t\t\tresult.projectTrustOverride = true;\n\t\t} else if (arg === \"--no-approve\" || arg === \"-na\") {\n\t\t\tresult.projectTrustOverride = false;\n\t\t} else if (arg === \"--offline\") {\n\t\t\tresult.offline = true;\n\t\t} else if (arg.startsWith(\"@\")) {\n\t\t\tresult.fileArgs.push(arg.slice(1)); // Remove @ prefix\n\t\t} else if (arg.startsWith(\"--\")) {\n\t\t\tconst eqIndex = arg.indexOf(\"=\");\n\t\t\tif (eqIndex !== -1) {\n\t\t\t\tresult.unknownFlags.set(arg.slice(2, eqIndex), arg.slice(eqIndex + 1));\n\t\t\t} else {\n\t\t\t\tconst flagName = arg.slice(2);\n\t\t\t\tconst next = args[i + 1];\n\t\t\t\tif (next !== undefined && !next.startsWith(\"-\") && !next.startsWith(\"@\")) {\n\t\t\t\t\tresult.unknownFlags.set(flagName, next);\n\t\t\t\t\ti++;\n\t\t\t\t} else {\n\t\t\t\t\tresult.unknownFlags.set(flagName, true);\n\t\t\t\t}\n\t\t\t}\n\t\t} else if (arg.startsWith(\"-\") && !arg.startsWith(\"--\")) {\n\t\t\tresult.diagnostics.push({ type: \"error\", message: `Unknown option: ${arg}` });\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tresult.messages.push(arg);\n\t\t}\n\t}\n\n\treturn result;\n}\n\nexport function printHelp(extensionFlags?: ExtensionFlag[]): void {\n\tconst extensionFlagsText =\n\t\textensionFlags && extensionFlags.length > 0\n\t\t\t? `\\n${chalk.bold(\"Extension CLI Flags:\")}\\n${extensionFlags\n\t\t\t\t\t.map((flag) => {\n\t\t\t\t\t\tconst value = flag.type === \"string\" ? \" <value>\" : \"\";\n\t\t\t\t\t\tconst description = flag.description ?? `Registered by ${flag.extensionPath}`;\n\t\t\t\t\t\treturn `  --${flag.name}${value}`.padEnd(30) + description;\n\t\t\t\t\t})\n\t\t\t\t\t.join(\"\\n\")}\\n`\n\t\t\t: \"\";\n\tconsole.log(`${chalk.bold(APP_NAME)} - AI coding assistant with read, bash, edit, write, find, search, ask_user_question, todo tools\n\n${chalk.bold(\"Usage:\")}\n  ${APP_NAME} [options] [--] [@files...] [messages...]\n\n${chalk.bold(\"Commands:\")}\n  ${APP_NAME} install <source> [-l]     Install extension source and add to settings\n  ${APP_NAME} remove <source> [-l]      Remove extension source from settings\n  ${APP_NAME} uninstall <source> [-l]   Alias for remove\n  ${APP_NAME} update [source|self|${APP_NAME}] [--all]   Update ${APP_NAME} (use --all for ${APP_NAME} and extensions)\n  ${APP_NAME} list                      List installed extensions from settings\n  ${APP_NAME} config [-l]               Open resource TUI (Tab switches global/project scope)\n  ${APP_NAME} auth <command>            Print credentials or check provider readiness\n  ${APP_NAME} mcp <command>             Configure MCP servers, check connections, and sign in\n  ${APP_NAME} <command> --help          Show help for install/remove/uninstall/update/list/config/auth/mcp\n\n${chalk.bold(\"Options:\")}\n  --provider <name>              Provider to search for --model (requires --model)\n  --model <pattern>              Model pattern or ID (supports \"provider/id\" and optional \":<thinking>\")\n  --api-key <key>                API key (defaults to env vars)\n  --system-prompt <text>         System prompt (default: coding assistant prompt)\n  --append-system-prompt <text>  Append text or file contents to the system prompt (can be used multiple times)\n  --mode <mode>                  Output mode: text (default), json, or rpc\n  --print, -p                    Non-interactive mode: process prompt and exit\n  --continue, -c                 Continue previous session\n  --resume, -r                   Select a session to resume\n  --session <path|id>            Use file, exact ID, or unique 8-hex UUID prefix\n  --session-id <id>              Use exact project session ID, creating it if missing\n  --fork <path|id>               Fork file, exact ID, or unique 8-hex UUID prefix into a new session\n  --session-dir <dir>            Directory for session storage and lookup\n  --no-session                   Don't save session (ephemeral)\n  --name, -n <name>              Set session display name\n  --models <patterns>            Comma-separated model patterns for ctrl+p cycling\n                                 Supports globs (anthropic/*, *sonnet*) and fuzzy matching\n  --no-tools, -nt                Disable every tool, including Intercom, even with --tools\n  --no-builtin-tools, -nbt       Disable built-in tools by default but keep extension/custom tools enabled\n  --tools, -t <tools>            Comma-separated allowlist of tool names or patterns (*)\n                                 Keeps MCP tools unless an entry starts with mcp__\n  --exclude-tools, -xt <tools>   Comma-separated denylist of tool names or patterns (*), including MCP tools\n                                 Intercom follows the allowlist and exclusions\n  --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh, max\n  --extension, -e <path>         Load an extension file (can be used multiple times)\n  --no-extensions, -ne           Disable optional extension discovery; mandatory bundled Intercom remains loaded\n  --no-mcp                       Disable built-in MCP support for this run\n  --skill <path>                 Load a skill file or directory (can be used multiple times)\n  --no-skills, -ns               Disable skills discovery and loading\n  --prompt-template <path>       Load a prompt template file or directory (can be used multiple times)\n  --no-prompt-templates, -np     Disable prompt template discovery and loading\n  --theme <path>                 Load a theme file or directory (can be used multiple times)\n  --use-theme <name[/name]>      Set the interactive theme for this run without saving it\n  --no-themes                    Disable theme discovery and loading\n  --no-context-files, -nc        Disable context-file discovery and loading\n  --export <file>                Export session file to HTML and exit\n  --list-models [search]         List available models (with optional fuzzy search)\n  --verbose                      Force verbose startup (overrides quietStartup setting)\n  --approve, -a                  Trust project-local files for this run\n  --no-approve, -na              Ignore project-local files for this run\n  --offline                      Disable startup network operations (same as ${ENV_OFFLINE}=1)\n  --                             End option parsing; treat remaining arguments as messages/files\n  --help, -h                     Show this help\n  --version, -v                  Show version number\n\nExtensions can register additional flags (e.g., --plan from plan-mode extension).${extensionFlagsText}\n\n${chalk.bold(\"Examples:\")}\n  # Print a provider API key for an external client\n  ${APP_NAME} auth print-api-key --model gpt-5.5 --provider openai\n\n  # Check configured provider readiness before starting a session\n  ${APP_NAME} auth check --provider openai\n\n  # Print an OAuth bearer token, refreshing it when under the minimum expiry\n  ${APP_NAME} auth print-bearer-token --model gpt-5.5 --provider openai-codex --min-expiry 30m\n\n  # Interactive mode\n  ${APP_NAME}\n\n  # Interactive mode with initial prompt\n  ${APP_NAME} \"List all .ts files in src/\"\n\n  # Include files in initial message\n  ${APP_NAME} @prompt.md @image.png \"What color is the sky?\"\n\n  # Non-interactive mode (process and exit)\n  ${APP_NAME} -p \"List all .ts files in src/\"\n\n  # Prompt beginning with a dash\n  ${APP_NAME} -p -- \"- Summarize these points\"\n\n  # Multiple messages (interactive)\n  ${APP_NAME} \"Read package.json\" \"What dependencies do we have?\"\n\n  # Continue previous session\n  ${APP_NAME} --continue \"What did we discuss?\"\n\n  # Start a named session\n  ${APP_NAME} --name \"Refactor auth module\"\n\n  # Use different model\n  ${APP_NAME} --provider openai --model gpt-4o-mini \"Help me refactor this code\"\n\n  # Use model with provider prefix (no --provider needed)\n  ${APP_NAME} --model openai/gpt-4o \"Help me refactor this code\"\n\n  # Use model with thinking level shorthand\n  ${APP_NAME} --model sonnet:high \"Solve this complex problem\"\n\n  # Limit model cycling to specific models\n  ${APP_NAME} --models claude-sonnet,claude-haiku,gpt-4o\n\n  # Limit to a specific provider with glob pattern\n  ${APP_NAME} --models \"github-copilot/*\"\n\n  # Cycle models with fixed thinking levels\n  ${APP_NAME} --models sonnet:high,haiku:low\n\n  # Start with a specific thinking level\n  ${APP_NAME} --thinking high \"Solve this complex problem\"\n\n  # Read-only mode (no file modifications possible)\n  ${APP_NAME} --tools read,search,find,ls -p \"Review the code in src/\"\n\n  # Codemode with only one MCP server's tools\n  ${APP_NAME} --tools read,codemode,'mcp__docs__*'\n\n  # Disable one tool while keeping the rest available\n  ${APP_NAME} --exclude-tools ask_user_question\n\n  # Export a session file to HTML\n  ${APP_NAME} --export ~/${CONFIG_DIR_NAME}/agent/sessions/--path--/session.jsonl\n  ${APP_NAME} --export session.jsonl output.html\n\n${chalk.bold(\"Environment Variables:\")}\n  ANTHROPIC_AUTH_TOKEN             - Anthropic bearer auth token\n  ANTHROPIC_API_KEY                - Anthropic Claude API key\n  ANTHROPIC_OAUTH_TOKEN            - Anthropic OAuth token (alternative to API key)\n  OPENAI_API_KEY                   - OpenAI GPT API key\n  AZURE_OPENAI_API_KEY             - Azure OpenAI API key\n  AZURE_OPENAI_BASE_URL            - Azure OpenAI/Cognitive Services base URL (e.g. https://{resource}.openai.azure.com)\n  AZURE_OPENAI_RESOURCE_NAME       - Azure OpenAI resource name (alternative to base URL)\n  AZURE_OPENAI_API_VERSION         - Azure OpenAI API version (default: v1)\n  AZURE_OPENAI_DEPLOYMENT_NAME_MAP - Azure OpenAI model=deployment map (comma-separated)\n  DEEPSEEK_API_KEY                 - DeepSeek API key\n  GEMINI_API_KEY                   - Google Gemini API key\n  GROQ_API_KEY                     - Groq API key\n  CEREBRAS_API_KEY                 - Cerebras API key\n  XAI_API_KEY                      - xAI Grok API key\n  FIREWORKS_API_KEY                - Fireworks API key\n  TOGETHER_API_KEY                 - Together AI API key\n  BASETEN_API_KEY                  - Baseten API key\n  OPENROUTER_API_KEY               - OpenRouter API key\n  AI_GATEWAY_API_KEY               - Vercel AI Gateway API key\n  ZAI_API_KEY                      - ZAI API key\n  MISTRAL_API_KEY                  - Mistral API key\n  MINIMAX_API_KEY                  - MiniMax API key\n  MOONSHOT_API_KEY                 - Moonshot AI API key\n  OPENCODE_API_KEY                 - OpenCode Zen/OpenCode Go API key\n  KIMI_API_KEY                     - Kimi For Coding API key\n  META_API_KEY                     - Meta Model API key\n  CLOUDFLARE_API_KEY               - Cloudflare API token (Workers AI and AI Gateway)\n  CLOUDFLARE_ACCOUNT_ID            - Cloudflare account id (required for both)\n  CLOUDFLARE_GATEWAY_ID            - Cloudflare AI Gateway slug (required for AI Gateway)\n  QWEN_TOKEN_PLAN_API_KEY          - Qwen Token Plan API key (international region)\n  QWEN_TOKEN_PLAN_CN_API_KEY       - Qwen Token Plan API key (China region)\n  XIAOMI_API_KEY                   - Xiaomi MiMo API key (api.xiaomimimo.com billing)\n  XIAOMI_TOKEN_PLAN_CN_API_KEY     - Xiaomi MiMo Token Plan API key (China region)\n  XIAOMI_TOKEN_PLAN_AMS_API_KEY    - Xiaomi MiMo Token Plan API key (Amsterdam region)\n  XIAOMI_TOKEN_PLAN_SGP_API_KEY    - Xiaomi MiMo Token Plan API key (Singapore region)\n  AWS_PROFILE                      - AWS profile for Amazon Bedrock\n  AWS_ACCESS_KEY_ID                - AWS access key for Amazon Bedrock\n  AWS_SECRET_ACCESS_KEY            - AWS secret key for Amazon Bedrock\n  AWS_BEARER_TOKEN_BEDROCK         - Bedrock API key (bearer token)\n  AWS_REGION                       - AWS region for Amazon Bedrock (e.g., us-east-1)\n  ${ENV_AGENT_DIR.padEnd(32)} - Config directory (default: ~/${CONFIG_DIR_NAME}/agent)\n  ${ENV_SESSION_DIR.padEnd(32)} - Session storage directory (overridden by --session-dir)\n  ${ENV_PACKAGE_DIR.padEnd(32)} - Override package directory (for Nix/Guix store paths)\n  ${ENV_OFFLINE.padEnd(32)} - Disable startup network operations when set to 1/true/yes\n  ${ENV_TELEMETRY.padEnd(32)} - Override install telemetry when set to 1/true/yes or 0/false/no\n  ${ENV_SHARE_VIEWER_URL.padEnd(32)} - Base URL for /share command (default: https://pi.dev/session/)\n  PI_* aliases are also supported for app-specific variables above.\n\n${chalk.bold(\"Built-in Tool Names:\")}\n  read              - Read path selectors (files, dirs, archives, URLs)\n  bash              - Execute shell commands\n  powershell        - Execute PowerShell commands on Windows\n  edit              - Apply hashline-anchored source edits\n  write             - Create or overwrite writable path selectors\n  find              - Find filesystem paths by glob pattern (default)\n  search            - Search file contents with regex (default)\n  ask_user_question - Ask structured questions in the TUI (default)\n  todo              - Manage file-based todos (default)\n  ls                - Legacy directory listing helper (read-only, off by default)\n`);\n}\n"]}
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ThinkingLevel);\n}\n\n/**\n * Insert forced option arguments (e.g. a dedicated entry point's `--mode rpc`)\n * immediately before the first `--` end-of-options terminator, or append them\n * when no terminator is present. Keeps the forced options parsed as options\n * (never literal message text) while preserving last-option-wins semantics,\n * since caller options can only appear before the terminator.\n */\nexport function insertForcedOptionsBeforeTerminator(args: string[], forced: string[]): string[] {\n\tconst terminatorIndex = args.indexOf(\"--\");\n\tconst insertAt = terminatorIndex === -1 ? args.length : terminatorIndex;\n\treturn [...args.slice(0, insertAt), ...forced, ...args.slice(insertAt)];\n}\n\nexport function parseArgs(args: string[]): Args {\n\tconst result: Args = {\n\t\tmessages: [],\n\t\tfileArgs: [],\n\t\tunknownFlags: new Map(),\n\t\tdiagnostics: [],\n\t};\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i];\n\n\t\tif (arg === \"--\") {\n\t\t\tresult.messages.push(...args.slice(i + 1));\n\t\t\tbreak;\n\t\t}\n\n\t\tif (arg === \"--help\" || arg === \"-h\") {\n\t\t\tresult.help = true;\n\t\t} else if (arg === \"--version\" || arg === \"-v\") {\n\t\t\tresult.version = true;\n\t\t} else if (arg === \"--mode\") {\n\t\t\tconst mode = args[i + 1];\n\t\t\tif (mode === undefined || mode.startsWith(\"-\")) {\n\t\t\t\tresult.diagnostics.push({ type: \"error\", message: \"--mode requires text, json, or rpc\" });\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\ti++;\n\t\t\tif (mode !== \"text\" && mode !== \"json\" && mode !== \"rpc\") {\n\t\t\t\tresult.diagnostics.push({\n\t\t\t\t\ttype: \"error\",\n\t\t\t\t\tmessage: `Invalid mode \"${mode}\". Valid values: text, json, rpc`,\n\t\t\t\t});\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tresult.mode = mode;\n\t\t} else if (arg === \"--continue\" || arg === \"-c\") {\n\t\t\tresult.continue = true;\n\t\t} else if (arg === \"--resume\" || arg === \"-r\") {\n\t\t\tresult.resume = true;\n\t\t} else if (arg === \"--provider\" && i + 1 < args.length) {\n\t\t\tresult.provider = args[++i];\n\t\t} else if (arg === \"--model\" && i + 1 < args.length) {\n\t\t\tresult.model = args[++i];\n\t\t} else if (arg === \"--api-key\" && i + 1 < args.length) {\n\t\t\tresult.apiKey = args[++i];\n\t\t} else if (arg === \"--system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.systemPrompt = args[++i];\n\t\t} else if (arg === \"--append-system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.appendSystemPrompt = result.appendSystemPrompt ?? [];\n\t\t\tresult.appendSystemPrompt.push(args[++i]);\n\t\t} else if (arg === \"--name\" || arg === \"-n\") {\n\t\t\tif (i + 1 < args.length) {\n\t\t\t\tresult.name = args[++i];\n\t\t\t} else {\n\t\t\t\tresult.diagnostics.push({ type: \"error\", message: \"--name requires a value\" });\n\t\t\t}\n\t\t} else if (arg === \"--no-session\") {\n\t\t\tresult.noSession = true;\n\t\t} else if (arg === \"--session\" && i + 1 < args.length) {\n\t\t\tresult.session = args[++i];\n\t\t} else if (arg === \"--session-id\" && i + 1 < args.length) {\n\t\t\tresult.sessionId = args[++i];\n\t\t} else if (arg === \"--fork\" && i + 1 < args.length) {\n\t\t\tresult.fork = args[++i];\n\t\t} else if (arg === \"--session-dir\" && i + 1 < args.length) {\n\t\t\tresult.sessionDir = args[++i];\n\t\t} else if (arg === \"--models\" && i + 1 < args.length) {\n\t\t\tresult.models = args[++i]\n\t\t\t\t.split(\",\")\n\t\t\t\t.map((s) => s.trim())\n\t\t\t\t.filter((pattern) => pattern.length > 0);\n\t\t} else if (arg === \"--no-tools\" || arg === \"-nt\") {\n\t\t\tresult.noTools = true;\n\t\t} else if (arg === \"--no-builtin-tools\" || arg === \"-nbt\") {\n\t\t\tresult.noBuiltinTools = true;\n\t\t} else if ((arg === \"--tools\" || arg === \"-t\") && i + 1 < args.length) {\n\t\t\tconst tools = args[++i]\n\t\t\t\t.split(\",\")\n\t\t\t\t.map((s) => s.trim())\n\t\t\t\t.filter((name) => name.length > 0);\n\t\t\tconst error = getToolListError(tools);\n\t\t\tif (error) result.diagnostics.push({ type: \"error\", message: `${arg}: ${error}` });\n\t\t\telse result.tools = tools;\n\t\t} else if ((arg === \"--exclude-tools\" || arg === \"-xt\") && i + 1 < args.length) {\n\t\t\tresult.excludeTools = args[++i]\n\t\t\t\t.split(\",\")\n\t\t\t\t.map((s) => s.trim())\n\t\t\t\t.filter((name) => name.length > 0);\n\t\t} else if (arg === \"--thinking\" && i + 1 < args.length) {\n\t\t\tconst level = args[++i];\n\t\t\tif (isValidThinkingLevel(level)) {\n\t\t\t\tresult.thinking = level;\n\t\t\t} else {\n\t\t\t\tresult.diagnostics.push({\n\t\t\t\t\ttype: \"warning\",\n\t\t\t\t\tmessage: `Invalid thinking level \"${level}\". Valid values: ${VALID_THINKING_LEVELS.join(\", \")}`,\n\t\t\t\t});\n\t\t\t}\n\t\t} else if (arg === \"--print\" || arg === \"-p\") {\n\t\t\tresult.print = true;\n\t\t\tconst next = args[i + 1];\n\t\t\tif (next !== undefined && !next.startsWith(\"@\") && (!next.startsWith(\"-\") || next.startsWith(\"---\"))) {\n\t\t\t\tresult.messages.push(next);\n\t\t\t\ti++;\n\t\t\t}\n\t\t} else if (arg === \"--export\" && i + 1 < args.length) {\n\t\t\tresult.export = args[++i];\n\t\t} else if ((arg === \"--extension\" || arg === \"-e\") && i + 1 < args.length) {\n\t\t\tresult.extensions = result.extensions ?? [];\n\t\t\tresult.extensions.push(args[++i]);\n\t\t} else if (arg === \"--no-extensions\" || arg === \"-ne\") {\n\t\t\tresult.noExtensions = true;\n\t\t} else if (arg === \"--no-mcp\") {\n\t\t\tresult.noMcp = true;\n\t\t} else if (arg === \"--skill\" && i + 1 < args.length) {\n\t\t\tresult.skills = result.skills ?? [];\n\t\t\tresult.skills.push(args[++i]);\n\t\t} else if (arg === \"--prompt-template\" && i + 1 < args.length) {\n\t\t\tresult.promptTemplates = result.promptTemplates ?? [];\n\t\t\tresult.promptTemplates.push(args[++i]);\n\t\t} else if (arg === \"--theme\" && i + 1 < args.length) {\n\t\t\tresult.themes = result.themes ?? [];\n\t\t\tresult.themes.push(args[++i]);\n\t\t} else if (arg === \"--use-theme\") {\n\t\t\tconst themeName = args[i + 1];\n\t\t\tif (themeName === undefined || themeName.startsWith(\"-\")) {\n\t\t\t\tresult.diagnostics.push({ type: \"error\", message: \"--use-theme requires a theme name\" });\n\t\t\t} else {\n\t\t\t\tresult.useTheme = themeName;\n\t\t\t\ti++;\n\t\t\t}\n\t\t} else if (arg === \"--no-skills\" || arg === \"-ns\") {\n\t\t\tresult.noSkills = true;\n\t\t} else if (arg === \"--no-prompt-templates\" || arg === \"-np\") {\n\t\t\tresult.noPromptTemplates = true;\n\t\t} else if (arg === \"--no-themes\") {\n\t\t\tresult.noThemes = true;\n\t\t} else if (arg === \"--no-context-files\" || arg === \"-nc\") {\n\t\t\tresult.noContextFiles = true;\n\t\t} else if (arg === \"--list-models\") {\n\t\t\t// Check if next arg is a search pattern (not a flag or file arg)\n\t\t\tif (i + 1 < args.length && !args[i + 1].startsWith(\"-\") && !args[i + 1].startsWith(\"@\")) {\n\t\t\t\tresult.listModels = args[++i];\n\t\t\t} else {\n\t\t\t\tresult.listModels = true;\n\t\t\t}\n\t\t} else if (arg === \"--verbose\") {\n\t\t\tresult.verbose = true;\n\t\t} else if (arg === \"--approve\" || arg === \"-a\") {\n\t\t\tresult.projectTrustOverride = true;\n\t\t} else if (arg === \"--no-approve\" || arg === \"-na\") {\n\t\t\tresult.projectTrustOverride = false;\n\t\t} else if (arg === \"--offline\") {\n\t\t\tresult.offline = true;\n\t\t} else if (arg.startsWith(\"@\")) {\n\t\t\tresult.fileArgs.push(arg.slice(1)); // Remove @ prefix\n\t\t} else if (arg.startsWith(\"--\")) {\n\t\t\tconst eqIndex = arg.indexOf(\"=\");\n\t\t\tif (eqIndex !== -1) {\n\t\t\t\tresult.unknownFlags.set(arg.slice(2, eqIndex), arg.slice(eqIndex + 1));\n\t\t\t} else {\n\t\t\t\tconst flagName = arg.slice(2);\n\t\t\t\tconst next = args[i + 1];\n\t\t\t\tif (next !== undefined && !next.startsWith(\"-\") && !next.startsWith(\"@\")) {\n\t\t\t\t\tresult.unknownFlags.set(flagName, next);\n\t\t\t\t\ti++;\n\t\t\t\t} else {\n\t\t\t\t\tresult.unknownFlags.set(flagName, true);\n\t\t\t\t}\n\t\t\t}\n\t\t} else if (arg.startsWith(\"-\") && !arg.startsWith(\"--\")) {\n\t\t\tresult.diagnostics.push({ type: \"error\", message: `Unknown option: ${arg}` });\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tresult.messages.push(arg);\n\t\t}\n\t}\n\n\treturn result;\n}\n\nexport function printHelp(extensionFlags?: ExtensionFlag[]): void {\n\tconst extensionFlagsText =\n\t\textensionFlags && extensionFlags.length > 0\n\t\t\t? `\\n${chalk.bold(\"Extension CLI Flags:\")}\\n${extensionFlags\n\t\t\t\t\t.map((flag) => {\n\t\t\t\t\t\tconst value = flag.type === \"string\" ? \" <value>\" : \"\";\n\t\t\t\t\t\tconst description = flag.description ?? `Registered by ${flag.extensionPath}`;\n\t\t\t\t\t\treturn `  --${flag.name}${value}`.padEnd(30) + description;\n\t\t\t\t\t})\n\t\t\t\t\t.join(\"\\n\")}\\n`\n\t\t\t: \"\";\n\tconsole.log(`${chalk.bold(APP_NAME)} - AI coding assistant with read, bash, edit, write, find, search, ask_user_question, todo tools\n\n${chalk.bold(\"Usage:\")}\n  ${APP_NAME} [options] [--] [@files...] [messages...]\n\n${chalk.bold(\"Commands:\")}\n  ${APP_NAME} install <source> [-l]     Install extension source and add to settings\n  ${APP_NAME} remove <source> [-l]      Remove extension source from settings\n  ${APP_NAME} uninstall <source> [-l]   Alias for remove\n  ${APP_NAME} update [source|self|${APP_NAME}] [--all]   Update ${APP_NAME} (use --all for ${APP_NAME} and extensions)\n  ${APP_NAME} list                      List installed extensions from settings\n  ${APP_NAME} config [-l]               Open resource TUI (Tab switches global/project scope)\n  ${APP_NAME} auth <command>            Print credentials or check provider readiness\n  ${APP_NAME} mcp <command>             Configure MCP servers, check connections, and sign in\n  ${APP_NAME} <command> --help          Show help for install/remove/uninstall/update/list/config/auth/mcp\n\n${chalk.bold(\"Options:\")}\n  --provider <name>              Provider to search for --model (requires --model)\n  --model <pattern>              Model pattern or ID (supports \"provider/id\" and optional \":<thinking>\")\n  --api-key <key>                API key (defaults to env vars)\n  --system-prompt <text>         System prompt (default: coding assistant prompt)\n  --append-system-prompt <text>  Append text or file contents to the system prompt (can be used multiple times)\n  --mode <mode>                  Output mode: text (default), json, or rpc\n  --print, -p                    Non-interactive mode: process prompt and exit\n  --continue, -c                 Continue previous session\n  --resume, -r                   Select a session to resume\n  --session <path|id>            Use file, exact ID, or unique 8-hex UUID prefix\n  --session-id <id>              Use exact project session ID, creating it if missing\n  --fork <path|id>               Fork file, exact ID, or unique 8-hex UUID prefix into a new session\n  --session-dir <dir>            Directory for session storage and lookup\n  --no-session                   Don't save session (ephemeral)\n  --name, -n <name>              Set session display name\n  --models <patterns>            Comma-separated model patterns for ctrl+p cycling\n                                 Supports globs (anthropic/*, *sonnet*) and fuzzy matching\n  --no-tools, -nt                Disable every tool, including Intercom, even with --tools\n  --no-builtin-tools, -nbt       Disable built-in tools by default but keep extension/custom tools enabled\n  --tools, -t <tools>            Comma-separated allowlist of tool names or patterns (*)\n                                 Keeps MCP tools unless an entry starts with mcp__\n                                 Only +name/-name entries change the default selection\n  --exclude-tools, -xt <tools>   Comma-separated denylist of tool names or patterns (*), including MCP tools\n                                 Intercom follows the allowlist and exclusions\n  --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh, max\n  --extension, -e <path>         Load an extension file (can be used multiple times)\n  --no-extensions, -ne           Disable optional extension discovery; mandatory bundled Intercom remains loaded\n  --no-mcp                       Disable built-in MCP support for this run\n  --skill <path>                 Load a skill file or directory (can be used multiple times)\n  --no-skills, -ns               Disable skills discovery and loading\n  --prompt-template <path>       Load a prompt template file or directory (can be used multiple times)\n  --no-prompt-templates, -np     Disable prompt template discovery and loading\n  --theme <path>                 Load a theme file or directory (can be used multiple times)\n  --use-theme <name[/name]>      Set the interactive theme for this run without saving it\n  --no-themes                    Disable theme discovery and loading\n  --no-context-files, -nc        Disable context-file discovery and loading\n  --export <file>                Export session file to HTML and exit\n  --list-models [search]         List available models (with optional fuzzy search)\n  --verbose                      Force verbose startup (overrides quietStartup setting)\n  --approve, -a                  Trust project-local files for this run\n  --no-approve, -na              Ignore project-local files for this run\n  --offline                      Disable startup network operations (same as ${ENV_OFFLINE}=1)\n  --                             End option parsing; treat remaining arguments as messages/files\n  --help, -h                     Show this help\n  --version, -v                  Show version number\n\nExtensions can register additional flags (e.g., --plan from plan-mode extension).${extensionFlagsText}\n\n${chalk.bold(\"Examples:\")}\n  # Print a provider API key for an external client\n  ${APP_NAME} auth print-api-key --model gpt-5.5 --provider openai\n\n  # Check configured provider readiness before starting a session\n  ${APP_NAME} auth check --provider openai\n\n  # Print an OAuth bearer token, refreshing it when under the minimum expiry\n  ${APP_NAME} auth print-bearer-token --model gpt-5.5 --provider openai-codex --min-expiry 30m\n\n  # Interactive mode\n  ${APP_NAME}\n\n  # Interactive mode with initial prompt\n  ${APP_NAME} \"List all .ts files in src/\"\n\n  # Include files in initial message\n  ${APP_NAME} @prompt.md @image.png \"What color is the sky?\"\n\n  # Non-interactive mode (process and exit)\n  ${APP_NAME} -p \"List all .ts files in src/\"\n\n  # Prompt beginning with a dash\n  ${APP_NAME} -p -- \"- Summarize these points\"\n\n  # Multiple messages (interactive)\n  ${APP_NAME} \"Read package.json\" \"What dependencies do we have?\"\n\n  # Continue previous session\n  ${APP_NAME} --continue \"What did we discuss?\"\n\n  # Start a named session\n  ${APP_NAME} --name \"Refactor auth module\"\n\n  # Use different model\n  ${APP_NAME} --provider openai --model gpt-4o-mini \"Help me refactor this code\"\n\n  # Use model with provider prefix (no --provider needed)\n  ${APP_NAME} --model openai/gpt-4o \"Help me refactor this code\"\n\n  # Use model with thinking level shorthand\n  ${APP_NAME} --model sonnet:high \"Solve this complex problem\"\n\n  # Limit model cycling to specific models\n  ${APP_NAME} --models claude-sonnet,claude-haiku,gpt-4o\n\n  # Limit to a specific provider with glob pattern\n  ${APP_NAME} --models \"github-copilot/*\"\n\n  # Cycle models with fixed thinking levels\n  ${APP_NAME} --models sonnet:high,haiku:low\n\n  # Start with a specific thinking level\n  ${APP_NAME} --thinking high \"Solve this complex problem\"\n\n  # Read-only mode (no file modifications possible)\n  ${APP_NAME} --tools read,search,find,ls -p \"Review the code in src/\"\n\n  # Codemode with only one MCP server's tools\n  ${APP_NAME} --tools read,codemode,'mcp__docs__*'\n\n  # Disable one tool while keeping the rest available\n  ${APP_NAME} --exclude-tools ask_user_question\n\n  # Export a session file to HTML\n  ${APP_NAME} --export ~/${CONFIG_DIR_NAME}/agent/sessions/--path--/session.jsonl\n  ${APP_NAME} --export session.jsonl output.html\n\n${chalk.bold(\"Environment Variables:\")}\n  ANTHROPIC_AUTH_TOKEN             - Anthropic bearer auth token\n  ANTHROPIC_API_KEY                - Anthropic Claude API key\n  ANTHROPIC_OAUTH_TOKEN            - Anthropic OAuth token (alternative to API key)\n  OPENAI_API_KEY                   - OpenAI GPT API key\n  AZURE_OPENAI_API_KEY             - Azure OpenAI API key\n  AZURE_OPENAI_BASE_URL            - Azure OpenAI/Cognitive Services base URL (e.g. https://{resource}.openai.azure.com)\n  AZURE_OPENAI_RESOURCE_NAME       - Azure OpenAI resource name (alternative to base URL)\n  AZURE_OPENAI_API_VERSION         - Azure OpenAI API version (default: v1)\n  AZURE_OPENAI_DEPLOYMENT_NAME_MAP - Azure OpenAI model=deployment map (comma-separated)\n  DEEPSEEK_API_KEY                 - DeepSeek API key\n  GEMINI_API_KEY                   - Google Gemini API key\n  GROQ_API_KEY                     - Groq API key\n  CEREBRAS_API_KEY                 - Cerebras API key\n  XAI_API_KEY                      - xAI Grok API key\n  FIREWORKS_API_KEY                - Fireworks API key\n  TOGETHER_API_KEY                 - Together AI API key\n  BASETEN_API_KEY                  - Baseten API key\n  OPENROUTER_API_KEY               - OpenRouter API key\n  AI_GATEWAY_API_KEY               - Vercel AI Gateway API key\n  ZAI_API_KEY                      - ZAI API key\n  MISTRAL_API_KEY                  - Mistral API key\n  MINIMAX_API_KEY                  - MiniMax API key\n  MOONSHOT_API_KEY                 - Moonshot AI API key\n  OPENCODE_API_KEY                 - OpenCode Zen/OpenCode Go API key\n  KIMI_API_KEY                     - Kimi For Coding API key\n  META_API_KEY                     - Meta Model API key\n  CLOUDFLARE_API_KEY               - Cloudflare API token (Workers AI and AI Gateway)\n  CLOUDFLARE_ACCOUNT_ID            - Cloudflare account id (required for both)\n  CLOUDFLARE_GATEWAY_ID            - Cloudflare AI Gateway slug (required for AI Gateway)\n  QWEN_TOKEN_PLAN_API_KEY          - Qwen Token Plan API key (international region)\n  QWEN_TOKEN_PLAN_CN_API_KEY       - Qwen Token Plan API key (China region)\n  XIAOMI_API_KEY                   - Xiaomi MiMo API key (api.xiaomimimo.com billing)\n  XIAOMI_TOKEN_PLAN_CN_API_KEY     - Xiaomi MiMo Token Plan API key (China region)\n  XIAOMI_TOKEN_PLAN_AMS_API_KEY    - Xiaomi MiMo Token Plan API key (Amsterdam region)\n  XIAOMI_TOKEN_PLAN_SGP_API_KEY    - Xiaomi MiMo Token Plan API key (Singapore region)\n  AWS_PROFILE                      - AWS profile for Amazon Bedrock\n  AWS_ACCESS_KEY_ID                - AWS access key for Amazon Bedrock\n  AWS_SECRET_ACCESS_KEY            - AWS secret key for Amazon Bedrock\n  AWS_BEARER_TOKEN_BEDROCK         - Bedrock API key (bearer token)\n  AWS_REGION                       - AWS region for Amazon Bedrock (e.g., us-east-1)\n  ${ENV_AGENT_DIR.padEnd(32)} - Config directory (default: ~/${CONFIG_DIR_NAME}/agent)\n  ${ENV_SESSION_DIR.padEnd(32)} - Session storage directory (overridden by --session-dir)\n  ${ENV_PACKAGE_DIR.padEnd(32)} - Override package directory (for Nix/Guix store paths)\n  ${ENV_OFFLINE.padEnd(32)} - Disable startup network operations when set to 1/true/yes\n  ${ENV_TELEMETRY.padEnd(32)} - Override install telemetry when set to 1/true/yes or 0/false/no\n  ${ENV_SHARE_VIEWER_URL.padEnd(32)} - Base URL for /share command (default: https://pi.dev/session/)\n  PI_* aliases are also supported for app-specific variables above.\n\n${chalk.bold(\"Built-in Tool Names:\")}\n  read              - Read path selectors (files, dirs, archives, URLs)\n  bash              - Execute shell commands\n  powershell        - Execute PowerShell commands on Windows\n  edit              - Apply hashline-anchored source edits\n  write             - Create or overwrite writable path selectors\n  find              - Find filesystem paths by glob pattern (default)\n  search            - Search file contents with regex (default)\n  ask_user_question - Ask structured questions in the TUI (default)\n  todo              - Manage file-based todos (default)\n  ls                - Legacy directory listing helper (read-only, off by default)\n`);\n}\n"]}

package/dist/config.d.ts

@@ -122,7 +122,8 @@ export declare function getToolsDir(): string;
 export declare function getBinDir(): string;
 /**
  * Get path to the extension transpile cache directory (jiti fsCache).
- * Scoped by version so release upgrades never read stale transpiled output.
+ * Scoped by version and transform format so neither a release upgrade nor a
+ * loader transform change reads stale transpiled output.
  */
 export declare function getExtensionTranspileCacheDir(): string;
 /** Get path to prompt templates directory */

package/dist/config.d.ts.map

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package/dist/config.js

@@ -353,12 +353,14 @@ export function getToolsDir() {
 export function getBinDir() {
     return join(getAgentDir(), "bin");
 }
+const EXTENSION_TRANSPILE_CACHE_FORMAT = "ts-source-specifiers";
 /**
  * Get path to the extension transpile cache directory (jiti fsCache).
- * Scoped by version so release upgrades never read stale transpiled output.
+ * Scoped by version and transform format so neither a release upgrade nor a
+ * loader transform change reads stale transpiled output.
  */
 export function getExtensionTranspileCacheDir() {
-    return join(getAgentDir(), "cache", "jiti", VERSION);
+    return join(getAgentDir(), "cache", "jiti", `${VERSION}+${EXTENSION_TRANSPILE_CACHE_FORMAT}`);
 }
 /** Get path to prompt templates directory */
 export function getPromptsDir() {

package/dist/config.js.map

@@ -1 +1 @@
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{ createRequire } from \"node:module\";\nimport { existsSync, readFileSync } from \"fs\";\nimport { dirname, join, resolve } from \"path\";\nimport { resolvePackageDirFrom } from \"./config-package-identity.ts\";\nimport { getHomeDir, normalizePath } from \"./utils/paths.ts\";\nimport { isSplitLauncherRuntime, moduleFileFromMetaUrl } from \"./utils/split-launcher.ts\";\nimport { stripBom } from \"./utils/text.ts\";\n\n// =============================================================================\n// Package Detection\n// =============================================================================\n\nconst __filename = moduleFileFromMetaUrl(import.meta.url, \"app.js\");\nconst __dirname = dirname(__filename);\n\n/**\n * Detect if we're running as a Bun compiled binary.\n * Bun binaries have import.meta.url containing \"$bunfs\", \"~BUN\", or \"%7EBUN\" (Bun's virtual filesystem path).\n * Split Windows/macOS/Linux release launchers also set ATOMIC_CODING_AGENT before importing the sidecar app bundle.\n */\nconst bunFsMarkers = [\"$bunfs\", \"~BUN\", \"%7EBUN\"];\n// Check process.argv[1] as well as import.meta.url: in a CJS (bytecode) bundle\n// import.meta.url is rewritten to the original source path, but argv[1] still\n// points into Bun's virtual filesystem.\nexport const isBunBinary =\n\tisSplitLauncherRuntime() ||\n\t[import.meta.url, process.argv[1] ?? \"\"].some((candidate) =>\n\t\tbunFsMarkers.some((marker) => candidate.includes(marker)),\n\t);\n\n/**\n * Detect if we're running from a single-file bundle produced by `bun run bundle:dev`.\n * The bundle build inlines this env var via `--define`, so it is a compile-time\n * constant there and undefined everywhere else.\n */\nexport const isBundledBuild = process.env.ATOMIC_BUNDLED_BUILD === \"1\";\n\n/** Detect if Bun is the runtime (compiled binary or bun run) */\nexport const isBunRuntime = !!process.versions.bun;\n\n// =============================================================================\n// Install Method Detection\n// =============================================================================\n\nimport {\n\tdetectInstallMethodForRuntime,\n\tgetSelfUpdateCommandForRuntime,\n\tgetSelfUpdateUnavailableInstructionForRuntime,\n\tgetUpdateInstructionForRuntime,\n\ttype SelfUpdateRuntime,\n} from \"./config-self-update.ts\";\n\nexport type { InstallMethod, SelfUpdateCommand, SelfUpdateTarget } from \"./config-self-update.ts\";\n\nfunction selfUpdateRuntime(): SelfUpdateRuntime {\n\treturn {\n\t\tisBunBinary,\n\t\tisBunRuntime,\n\t\tmoduleDir: __dirname,\n\t\tgetPackageDir,\n\t};\n}\n\nexport function detectInstallMethod(): import(\"./config-self-update.ts\").InstallMethod {\n\treturn detectInstallMethodForRuntime(selfUpdateRuntime());\n}\n\nexport function getSelfUpdateCommand(\n\tpackageName: string,\n\tnpmCommand?: string[],\n\tupdateTarget: import(\"./config-self-update.ts\").SelfUpdateTarget = { packageName, installSpec: packageName },\n): import(\"./config-self-update.ts\").SelfUpdateCommand | undefined {\n\treturn getSelfUpdateCommandForRuntime(selfUpdateRuntime(), packageName, npmCommand, updateTarget);\n}\n\nexport function getSelfUpdateUnavailableInstruction(\n\tpackageName: string,\n\tnpmCommand?: string[],\n\tupdateTarget: import(\"./config-self-update.ts\").SelfUpdateTarget = { packageName, installSpec: packageName },\n): string {\n\treturn getSelfUpdateUnavailableInstructionForRuntime(selfUpdateRuntime(), packageName, npmCommand, updateTarget);\n}\n\nexport function getUpdateInstruction(packageName: string): string {\n\treturn getUpdateInstructionForRuntime(selfUpdateRuntime(), packageName);\n}\n\n// =============================================================================\n// Package Asset Paths (shipped with executable)\n// =============================================================================\n\n/**\n * Get the base directory for resolving package assets (themes, package.json, README.md, CHANGELOG.md).\n * - For Bun binary: returns the directory containing the executable\n * - For Node.js (dist/): returns __dirname (the dist/ directory)\n * - For source (src/): returns parent directory (the package root)\n */\nexport function getPackageDir(): string {\n\t// Allow override via environment variable (useful for Nix/Guix where store paths tokenize poorly).\n\t// This runs before package.json app config is read, so the env var name is hardcoded.\n\tconst envDir = process.env.ATOMIC_PACKAGE_DIR ?? process.env.PI_PACKAGE_DIR;\n\tif (envDir) {\n\t\treturn normalizePath(envDir);\n\t}\n\n\tif (isBunBinary) {\n\t\t// Bun binary: process.execPath points to the compiled executable\n\t\treturn dirname(process.execPath);\n\t}\n\t// Node.js: walk up from __dirname to the Atomic app package. Prebundled\n\t// companion extensions ship under dist/builtin/<name>/ with their own\n\t// package.json; stopping at the first one made APP_NAME \"workflows\".\n\treturn resolvePackageDirFrom(__dirname);\n}\n\n/**\n * Resolve the root that contains source-layout assets for non-binary runtimes.\n * Ordinary source and compiled modules already live in src/ or dist/, so use\n * their module directory directly. Bundled development builds and explicit\n * package-directory overrides instead need to select a package-root layout.\n */\nfunction getModuleAssetRoot(): string {\n\tconst hasPackageDirOverride = !!(process.env.ATOMIC_PACKAGE_DIR || process.env.PI_PACKAGE_DIR);\n\tif (!isBundledBuild && !hasPackageDirOverride) {\n\t\treturn __dirname;\n\t}\n\tconst packageDir = getPackageDir();\n\treturn join(packageDir, existsSync(join(packageDir, \"src\")) ? \"src\" : \"dist\");\n}\n\n/** Codemode workers and wasm live beside Atomic's split/development bundle. */\nlet codemodeWorkerDataUrl: URL | undefined;\nlet quickJSWasmPath: string | undefined;\n\nexport function getCodemodeWorkerUrl(): URL | undefined {\n\tif (codemodeWorkerDataUrl) return codemodeWorkerDataUrl;\n\tconst worker = isBunBinary\n\t\t? join(getPackageDir(), \"codemode-worker.js\")\n\t\t: isBundledBuild\n\t\t\t? join(dirname(resolve(process.argv[1])), \"codemode-worker.js\")\n\t\t\t: join(getModuleAssetRoot(), \"codemode-worker.js\");\n\tif (!isBunBinary && !isBundledBuild && !existsSync(worker)) return undefined;\n\t// A self-contained worker survives replacement or removal of the running install.\n\tcodemodeWorkerDataUrl ??= new URL(`data:text/javascript;base64,${readFileSync(worker).toString(\"base64\")}`);\n\treturn codemodeWorkerDataUrl;\n}\n\nexport function getQuickJSWasmPath(): string {\n\tquickJSWasmPath ??= isBunBinary\n\t\t? join(getPackageDir(), \"quickjs.wasm\")\n\t\t: isBundledBuild\n\t\t\t? join(dirname(resolve(process.argv[1])), \"quickjs.wasm\")\n\t\t\t: createRequire(__filename).resolve(\"quickjs-wasi/quickjs.wasm\");\n\treturn quickJSWasmPath;\n}\n\nexport type InstallChange = { kind: \"updated\"; version: string } | { kind: \"removed\" };\n\nexport function detectInstallChange(packageJsonPath = startupPackageJsonPath): InstallChange | undefined {\n\tif (isBunBinary || !packageJsonPath) return undefined;\n\tlet installed: PackageJson;\n\ttry {\n\t\tinstalled = JSON.parse(stripBom(readFileSync(packageJsonPath, \"utf-8\"))) as PackageJson;\n\t} catch (error) {\n\t\treturn (error as NodeJS.ErrnoException).code === \"ENOENT\" ? { kind: \"removed\" } : undefined;\n\t}\n\treturn installed.version && installed.version !== VERSION\n\t\t? { kind: \"updated\", version: installed.version }\n\t\t: undefined;\n}\n/**\n * Get path to built-in themes directory (shipped with package)\n * - For Bun binary: theme/ next to executable\n * - For Node.js (dist/): dist/modes/interactive/theme/\n * - For source (src/): src/modes/interactive/theme/\n */\nexport function getThemesDir(): string {\n\tif (isBunBinary) {\n\t\treturn join(getPackageDir(), \"theme\");\n\t}\n\treturn join(getModuleAssetRoot(), \"modes\", \"interactive\", \"theme\");\n}\n\n/**\n * Get path to HTML export template directory (shipped with package)\n * - For Bun binary: export-html/ next to executable\n * - For Node.js (dist/): dist/core/export-html/\n * - For source (src/): src/core/export-html/\n */\nexport function getExportTemplateDir(): string {\n\tif (isBunBinary) {\n\t\treturn join(getPackageDir(), \"export-html\");\n\t}\n\treturn join(getModuleAssetRoot(), \"core\", \"export-html\");\n}\n\n/** Get path to package.json */\nexport function getPackageJsonPath(): string {\n\treturn join(getPackageDir(), \"package.json\");\n}\n\n/** Get path to README.md */\nexport function getReadmePath(): string {\n\treturn resolve(join(getPackageDir(), \"README.md\"));\n}\n\n/** Get path to docs directory */\nexport function getDocsPath(): string {\n\treturn resolve(join(getPackageDir(), \"docs\"));\n}\n\n/** Get path to examples directory */\nexport function getExamplesPath(): string {\n\treturn resolve(join(getPackageDir(), \"examples\"));\n}\n\n/** Get path to CHANGELOG.md */\nexport function getChangelogPath(): string {\n\treturn resolve(join(getPackageDir(), \"CHANGELOG.md\"));\n}\n\n/**\n * Get path to built-in interactive assets directory.\n * - For Bun binary: assets/ next to executable\n * - For Node.js (dist/): dist/modes/interactive/assets/\n * - For source (src/): src/modes/interactive/assets/\n */\nexport function getInteractiveAssetsDir(): string {\n\tif (isBunBinary) {\n\t\treturn join(getPackageDir(), \"assets\");\n\t}\n\treturn join(getModuleAssetRoot(), \"modes\", \"interactive\", \"assets\");\n}\n\n/** Get path to a bundled interactive asset */\nexport function getBundledInteractiveAssetPath(name: string): string {\n\treturn join(getInteractiveAssetsDir(), name);\n}\n\n// =============================================================================\n// App Config (from package.json <appName>Config, with piConfig as a legacy shim)\n// =============================================================================\n\ninterface AppConfig {\n\tname?: string;\n\tconfigDir?: string;\n\tchangelogUrl?: string;\n}\n\ninterface PackageJson extends Record<string, unknown> {\n\tname?: string;\n\tversion?: string;\n\tpiConfig?: AppConfig;\n}\n\nlet pkg: PackageJson = {};\nlet startupPackageJsonPath: string | undefined;\ntry {\n\tconst packageJsonPath = getPackageJsonPath();\n\tpkg = JSON.parse(stripBom(readFileSync(packageJsonPath, \"utf-8\"))) as PackageJson;\n\tstartupPackageJsonPath = packageJsonPath;\n} catch (e: unknown) {\n\tconst err = e as NodeJS.ErrnoException;\n\tif (err.code !== \"ENOENT\") throw e;\n}\n\nfunction appNameFromPackageName(packageName: string | undefined): string | undefined {\n\tconst localName = packageName?.split(\"/\").pop()?.trim();\n\treturn localName && localName.length > 0 ? localName : undefined;\n}\n\nfunction readAppConfig(packageJson: PackageJson, appName: string | undefined): AppConfig | undefined {\n\tif (appName) {\n\t\tconst appConfig = packageJson[`${appName}Config`];\n\t\tif (appConfig && typeof appConfig === \"object\" && !Array.isArray(appConfig)) {\n\t\t\treturn appConfig as AppConfig;\n\t\t}\n\t}\n\treturn packageJson.piConfig;\n}\n\nexport const PACKAGE_NAME: string = pkg.name || \"@bastani/atomic\";\nconst packageAppName = appNameFromPackageName(PACKAGE_NAME);\nconst appConfig = readAppConfig(pkg, packageAppName);\nexport const APP_NAME: string = appConfig?.name || packageAppName || \"pi\";\nexport const APP_TITLE: string = appConfig?.name !== undefined || APP_NAME !== \"pi\" ? APP_NAME : \"π\";\nexport const CONFIG_DIR_NAME: string = appConfig?.configDir || (APP_NAME === \"pi\" ? \".pi\" : `.${APP_NAME}`);\nexport const LEGACY_CONFIG_DIR_NAME = \".pi\";\nexport const CONFIG_DIR_NAMES: readonly string[] =\n\tCONFIG_DIR_NAME === LEGACY_CONFIG_DIR_NAME ? [CONFIG_DIR_NAME] : [CONFIG_DIR_NAME, LEGACY_CONFIG_DIR_NAME];\nexport const VERSION: string = pkg.version || \"0.0.0\";\nexport const CHANGELOG_URL: string | undefined = appConfig?.changelogUrl?.trim() || undefined;\n\nconst ENV_PREFIX = APP_NAME.toUpperCase();\nexport const LEGACY_ENV_PREFIX = \"PI\";\n\n// e.g., ATOMIC_CODING_AGENT_DIR (with PI_CODING_AGENT_DIR as a compatibility alias)\nexport const ENV_AGENT_DIR = `${ENV_PREFIX}_CODING_AGENT_DIR`;\nexport const ENV_SESSION_DIR = `${ENV_PREFIX}_CODING_AGENT_SESSION_DIR`;\nexport const ENV_PACKAGE_DIR = `${ENV_PREFIX}_PACKAGE_DIR`;\nexport const ENV_OFFLINE = `${ENV_PREFIX}_OFFLINE`;\nexport const ENV_SKIP_VERSION_CHECK = `${ENV_PREFIX}_SKIP_VERSION_CHECK`;\nexport const ENV_STARTUP_BENCHMARK = `${ENV_PREFIX}_STARTUP_BENCHMARK`;\nexport const ENV_TELEMETRY = `${ENV_PREFIX}_TELEMETRY`;\nexport const ENV_SHARE_VIEWER_URL = `${ENV_PREFIX}_SHARE_VIEWER_URL`;\nexport const ENV_CLEAR_ON_SHRINK = `${ENV_PREFIX}_CLEAR_ON_SHRINK`;\nexport const ENV_HARDWARE_CURSOR = `${ENV_PREFIX}_HARDWARE_CURSOR`;\nexport const ENV_TIMING = `${ENV_PREFIX}_TIMING`;\nexport const WORKFLOW_STAGE_SUBAGENT_GUARD_ENV = `${ENV_PREFIX}_WORKFLOW_STAGE_SUBAGENT_GUARD`;\nexport function getEnvNames(name: string): string[] {\n\tif (ENV_PREFIX === LEGACY_ENV_PREFIX || !name.startsWith(`${ENV_PREFIX}_`)) return [name];\n\treturn [name, `${LEGACY_ENV_PREFIX}_${name.slice(ENV_PREFIX.length + 1)}`];\n}\n\nexport function getEnvValue(name: string): string | undefined {\n\tfor (const candidate of getEnvNames(name)) {\n\t\tconst value = process.env[candidate];\n\t\tif (value !== undefined) return value;\n\t}\n\treturn undefined;\n}\n\nexport function hasEnvValue(name: string): boolean {\n\treturn getEnvValue(name) !== undefined;\n}\n\nexport function setEnvValue(name: string, value: string): void {\n\tprocess.env[name] = value;\n}\n\nexport function expandTildePath(path: string): string {\n\treturn normalizePath(path);\n}\n\nconst DEFAULT_SHARE_VIEWER_URL = \"https://pi.dev/session/\";\n\nexport const VERSION_ADOPTION_ENDPOINT =\n\t\"https://atomic-version-adoption.bastani-atomic.workers.dev/v1/version-adoption\";\n\n/** Get the share viewer URL for a gist ID */\nexport function getShareViewerUrl(gistId: string): string {\n\tconst baseUrl = getEnvValue(ENV_SHARE_VIEWER_URL) || DEFAULT_SHARE_VIEWER_URL;\n\treturn `${baseUrl}#${gistId}`;\n}\n\n// =============================================================================\n// User Config Paths (~/.atomic/agent/*)\n// =============================================================================\n\n/** Get the agent config directory (e.g., ~/.atomic/agent/) */\nexport function getAgentDir(): string {\n\tconst envDir = getEnvValue(ENV_AGENT_DIR);\n\tif (envDir) {\n\t\treturn expandTildePath(envDir);\n\t}\n\treturn join(getHomeDir(), CONFIG_DIR_NAME, \"agent\");\n}\n\n/** Get the legacy pi agent config directory (e.g., ~/.pi/agent/) */\nexport function getLegacyAgentDir(): string {\n\treturn join(getHomeDir(), LEGACY_CONFIG_DIR_NAME, \"agent\");\n}\n\n/** Get agent config directories in precedence order (primary first, then legacy). */\nexport function getAgentDirs(): string[] {\n\tconst primary = getAgentDir();\n\tif (hasEnvValue(ENV_AGENT_DIR) || CONFIG_DIR_NAME === LEGACY_CONFIG_DIR_NAME) {\n\t\treturn [primary];\n\t}\n\tconst legacy = getLegacyAgentDir();\n\treturn legacy === primary ? 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{ createRequire } from \"node:module\";\nimport { existsSync, readFileSync } from \"fs\";\nimport { dirname, join, resolve } from \"path\";\nimport { resolvePackageDirFrom } from \"./config-package-identity.ts\";\nimport { getHomeDir, normalizePath } from \"./utils/paths.ts\";\nimport { isSplitLauncherRuntime, moduleFileFromMetaUrl } from \"./utils/split-launcher.ts\";\nimport { stripBom } from \"./utils/text.ts\";\n\n// =============================================================================\n// Package Detection\n// =============================================================================\n\nconst __filename = moduleFileFromMetaUrl(import.meta.url, \"app.js\");\nconst __dirname = dirname(__filename);\n\n/**\n * Detect if we're running as a Bun compiled binary.\n * Bun binaries have import.meta.url containing \"$bunfs\", \"~BUN\", or \"%7EBUN\" (Bun's virtual filesystem path).\n * Split Windows/macOS/Linux release launchers also set ATOMIC_CODING_AGENT before importing the sidecar app bundle.\n */\nconst bunFsMarkers = [\"$bunfs\", \"~BUN\", \"%7EBUN\"];\n// Check process.argv[1] as well as import.meta.url: in a CJS (bytecode) bundle\n// import.meta.url is rewritten to the original source path, but argv[1] still\n// points into Bun's virtual filesystem.\nexport const isBunBinary =\n\tisSplitLauncherRuntime() ||\n\t[import.meta.url, process.argv[1] ?? \"\"].some((candidate) =>\n\t\tbunFsMarkers.some((marker) => candidate.includes(marker)),\n\t);\n\n/**\n * Detect if we're running from a single-file bundle produced by `bun run bundle:dev`.\n * The bundle build inlines this env var via `--define`, so it is a compile-time\n * constant there and undefined everywhere else.\n */\nexport const isBundledBuild = process.env.ATOMIC_BUNDLED_BUILD === \"1\";\n\n/** Detect if Bun is the runtime (compiled binary or bun run) */\nexport const isBunRuntime = !!process.versions.bun;\n\n// =============================================================================\n// Install Method Detection\n// =============================================================================\n\nimport {\n\tdetectInstallMethodForRuntime,\n\tgetSelfUpdateCommandForRuntime,\n\tgetSelfUpdateUnavailableInstructionForRuntime,\n\tgetUpdateInstructionForRuntime,\n\ttype SelfUpdateRuntime,\n} from \"./config-self-update.ts\";\n\nexport type { InstallMethod, SelfUpdateCommand, SelfUpdateTarget } from \"./config-self-update.ts\";\n\nfunction selfUpdateRuntime(): SelfUpdateRuntime {\n\treturn {\n\t\tisBunBinary,\n\t\tisBunRuntime,\n\t\tmoduleDir: __dirname,\n\t\tgetPackageDir,\n\t};\n}\n\nexport function detectInstallMethod(): import(\"./config-self-update.ts\").InstallMethod {\n\treturn detectInstallMethodForRuntime(selfUpdateRuntime());\n}\n\nexport function getSelfUpdateCommand(\n\tpackageName: string,\n\tnpmCommand?: string[],\n\tupdateTarget: import(\"./config-self-update.ts\").SelfUpdateTarget = { packageName, installSpec: packageName },\n): import(\"./config-self-update.ts\").SelfUpdateCommand | undefined {\n\treturn getSelfUpdateCommandForRuntime(selfUpdateRuntime(), packageName, npmCommand, updateTarget);\n}\n\nexport function getSelfUpdateUnavailableInstruction(\n\tpackageName: string,\n\tnpmCommand?: string[],\n\tupdateTarget: import(\"./config-self-update.ts\").SelfUpdateTarget = { packageName, installSpec: packageName },\n): string {\n\treturn getSelfUpdateUnavailableInstructionForRuntime(selfUpdateRuntime(), packageName, npmCommand, updateTarget);\n}\n\nexport function getUpdateInstruction(packageName: string): string {\n\treturn getUpdateInstructionForRuntime(selfUpdateRuntime(), packageName);\n}\n\n// =============================================================================\n// Package Asset Paths (shipped with executable)\n// =============================================================================\n\n/**\n * Get the base directory for resolving package assets (themes, package.json, README.md, CHANGELOG.md).\n * - For Bun binary: returns the directory containing the executable\n * - For Node.js (dist/): returns __dirname (the dist/ directory)\n * - For source (src/): returns parent directory (the package root)\n */\nexport function getPackageDir(): string {\n\t// Allow override via environment variable (useful for Nix/Guix where store paths tokenize poorly).\n\t// This runs before package.json app config is read, so the env var name is hardcoded.\n\tconst envDir = process.env.ATOMIC_PACKAGE_DIR ?? process.env.PI_PACKAGE_DIR;\n\tif (envDir) {\n\t\treturn normalizePath(envDir);\n\t}\n\n\tif (isBunBinary) {\n\t\t// Bun binary: process.execPath points to the compiled executable\n\t\treturn dirname(process.execPath);\n\t}\n\t// Node.js: walk up from __dirname to the Atomic app package. Prebundled\n\t// companion extensions ship under dist/builtin/<name>/ with their own\n\t// package.json; stopping at the first one made APP_NAME \"workflows\".\n\treturn resolvePackageDirFrom(__dirname);\n}\n\n/**\n * Resolve the root that contains source-layout assets for non-binary runtimes.\n * Ordinary source and compiled modules already live in src/ or dist/, so use\n * their module directory directly. Bundled development builds and explicit\n * package-directory overrides instead need to select a package-root layout.\n */\nfunction getModuleAssetRoot(): string {\n\tconst hasPackageDirOverride = !!(process.env.ATOMIC_PACKAGE_DIR || process.env.PI_PACKAGE_DIR);\n\tif (!isBundledBuild && !hasPackageDirOverride) {\n\t\treturn __dirname;\n\t}\n\tconst packageDir = getPackageDir();\n\treturn join(packageDir, existsSync(join(packageDir, \"src\")) ? \"src\" : \"dist\");\n}\n\n/** Codemode workers and wasm live beside Atomic's split/development bundle. */\nlet codemodeWorkerDataUrl: URL | undefined;\nlet quickJSWasmPath: string | undefined;\n\nexport function getCodemodeWorkerUrl(): URL | undefined {\n\tif (codemodeWorkerDataUrl) return codemodeWorkerDataUrl;\n\tconst worker = isBunBinary\n\t\t? join(getPackageDir(), \"codemode-worker.js\")\n\t\t: isBundledBuild\n\t\t\t? join(dirname(resolve(process.argv[1])), \"codemode-worker.js\")\n\t\t\t: join(getModuleAssetRoot(), \"codemode-worker.js\");\n\tif (!isBunBinary && !isBundledBuild && !existsSync(worker)) return undefined;\n\t// A self-contained worker survives replacement or removal of the running install.\n\tcodemodeWorkerDataUrl ??= new URL(`data:text/javascript;base64,${readFileSync(worker).toString(\"base64\")}`);\n\treturn codemodeWorkerDataUrl;\n}\n\nexport function getQuickJSWasmPath(): string {\n\tquickJSWasmPath ??= isBunBinary\n\t\t? join(getPackageDir(), \"quickjs.wasm\")\n\t\t: isBundledBuild\n\t\t\t? join(dirname(resolve(process.argv[1])), \"quickjs.wasm\")\n\t\t\t: createRequire(__filename).resolve(\"quickjs-wasi/quickjs.wasm\");\n\treturn quickJSWasmPath;\n}\n\nexport type InstallChange = { kind: \"updated\"; version: string } | { kind: \"removed\" };\n\nexport function detectInstallChange(packageJsonPath = startupPackageJsonPath): InstallChange | undefined {\n\tif (isBunBinary || !packageJsonPath) return undefined;\n\tlet installed: PackageJson;\n\ttry {\n\t\tinstalled = JSON.parse(stripBom(readFileSync(packageJsonPath, \"utf-8\"))) as PackageJson;\n\t} catch (error) {\n\t\treturn (error as NodeJS.ErrnoException).code === \"ENOENT\" ? { kind: \"removed\" } : undefined;\n\t}\n\treturn installed.version && installed.version !== VERSION\n\t\t? { kind: \"updated\", version: installed.version }\n\t\t: undefined;\n}\n/**\n * Get path to built-in themes directory (shipped with package)\n * - For Bun binary: theme/ next to executable\n * - For Node.js (dist/): dist/modes/interactive/theme/\n * - For source (src/): src/modes/interactive/theme/\n */\nexport function getThemesDir(): string {\n\tif (isBunBinary) {\n\t\treturn join(getPackageDir(), \"theme\");\n\t}\n\treturn join(getModuleAssetRoot(), \"modes\", \"interactive\", \"theme\");\n}\n\n/**\n * Get path to HTML export template directory (shipped with package)\n * - For Bun binary: export-html/ next to executable\n * - For Node.js (dist/): dist/core/export-html/\n * - For source (src/): src/core/export-html/\n */\nexport function getExportTemplateDir(): string {\n\tif (isBunBinary) {\n\t\treturn join(getPackageDir(), \"export-html\");\n\t}\n\treturn join(getModuleAssetRoot(), \"core\", \"export-html\");\n}\n\n/** Get path to package.json */\nexport function getPackageJsonPath(): string {\n\treturn join(getPackageDir(), \"package.json\");\n}\n\n/** Get path to README.md */\nexport function getReadmePath(): string {\n\treturn resolve(join(getPackageDir(), \"README.md\"));\n}\n\n/** Get path to docs directory */\nexport function getDocsPath(): string {\n\treturn resolve(join(getPackageDir(), \"docs\"));\n}\n\n/** Get path to examples directory */\nexport function getExamplesPath(): string {\n\treturn resolve(join(getPackageDir(), \"examples\"));\n}\n\n/** Get path to CHANGELOG.md */\nexport function getChangelogPath(): string {\n\treturn resolve(join(getPackageDir(), \"CHANGELOG.md\"));\n}\n\n/**\n * Get path to built-in interactive assets directory.\n * - For Bun binary: assets/ next to executable\n * - For Node.js (dist/): dist/modes/interactive/assets/\n * - For source (src/): src/modes/interactive/assets/\n */\nexport function getInteractiveAssetsDir(): string {\n\tif (isBunBinary) {\n\t\treturn join(getPackageDir(), \"assets\");\n\t}\n\treturn join(getModuleAssetRoot(), \"modes\", \"interactive\", \"assets\");\n}\n\n/** Get path to a bundled interactive asset */\nexport function getBundledInteractiveAssetPath(name: string): string {\n\treturn join(getInteractiveAssetsDir(), name);\n}\n\n// =============================================================================\n// App Config (from package.json <appName>Config, with piConfig as a legacy shim)\n// =============================================================================\n\ninterface AppConfig {\n\tname?: string;\n\tconfigDir?: string;\n\tchangelogUrl?: string;\n}\n\ninterface PackageJson extends Record<string, unknown> {\n\tname?: string;\n\tversion?: string;\n\tpiConfig?: AppConfig;\n}\n\nlet pkg: PackageJson = {};\nlet startupPackageJsonPath: string | undefined;\ntry {\n\tconst packageJsonPath = getPackageJsonPath();\n\tpkg = JSON.parse(stripBom(readFileSync(packageJsonPath, \"utf-8\"))) as PackageJson;\n\tstartupPackageJsonPath = packageJsonPath;\n} catch (e: unknown) {\n\tconst err = e as NodeJS.ErrnoException;\n\tif (err.code !== \"ENOENT\") throw e;\n}\n\nfunction appNameFromPackageName(packageName: string | undefined): string | undefined {\n\tconst localName = packageName?.split(\"/\").pop()?.trim();\n\treturn localName && localName.length > 0 ? localName : undefined;\n}\n\nfunction readAppConfig(packageJson: PackageJson, appName: string | undefined): AppConfig | undefined {\n\tif (appName) {\n\t\tconst appConfig = packageJson[`${appName}Config`];\n\t\tif (appConfig && typeof appConfig === \"object\" && !Array.isArray(appConfig)) {\n\t\t\treturn appConfig as AppConfig;\n\t\t}\n\t}\n\treturn packageJson.piConfig;\n}\n\nexport const PACKAGE_NAME: string = pkg.name || \"@bastani/atomic\";\nconst packageAppName = appNameFromPackageName(PACKAGE_NAME);\nconst appConfig = readAppConfig(pkg, packageAppName);\nexport const APP_NAME: string = appConfig?.name || packageAppName || \"pi\";\nexport const APP_TITLE: string = appConfig?.name !== undefined || APP_NAME !== \"pi\" ? APP_NAME : \"π\";\nexport const CONFIG_DIR_NAME: string = appConfig?.configDir || (APP_NAME === \"pi\" ? \".pi\" : `.${APP_NAME}`);\nexport const LEGACY_CONFIG_DIR_NAME = \".pi\";\nexport const CONFIG_DIR_NAMES: readonly string[] =\n\tCONFIG_DIR_NAME === LEGACY_CONFIG_DIR_NAME ? [CONFIG_DIR_NAME] : [CONFIG_DIR_NAME, LEGACY_CONFIG_DIR_NAME];\nexport const VERSION: string = pkg.version || \"0.0.0\";\nexport const CHANGELOG_URL: string | undefined = appConfig?.changelogUrl?.trim() || undefined;\n\nconst ENV_PREFIX = APP_NAME.toUpperCase();\nexport const LEGACY_ENV_PREFIX = \"PI\";\n\n// e.g., ATOMIC_CODING_AGENT_DIR (with PI_CODING_AGENT_DIR as a compatibility alias)\nexport const ENV_AGENT_DIR = `${ENV_PREFIX}_CODING_AGENT_DIR`;\nexport const ENV_SESSION_DIR = `${ENV_PREFIX}_CODING_AGENT_SESSION_DIR`;\nexport const ENV_PACKAGE_DIR = `${ENV_PREFIX}_PACKAGE_DIR`;\nexport const ENV_OFFLINE = `${ENV_PREFIX}_OFFLINE`;\nexport const ENV_SKIP_VERSION_CHECK = `${ENV_PREFIX}_SKIP_VERSION_CHECK`;\nexport const ENV_STARTUP_BENCHMARK = `${ENV_PREFIX}_STARTUP_BENCHMARK`;\nexport const ENV_TELEMETRY = `${ENV_PREFIX}_TELEMETRY`;\nexport const ENV_SHARE_VIEWER_URL = `${ENV_PREFIX}_SHARE_VIEWER_URL`;\nexport const ENV_CLEAR_ON_SHRINK = `${ENV_PREFIX}_CLEAR_ON_SHRINK`;\nexport const ENV_HARDWARE_CURSOR = `${ENV_PREFIX}_HARDWARE_CURSOR`;\nexport const ENV_TIMING = `${ENV_PREFIX}_TIMING`;\nexport const WORKFLOW_STAGE_SUBAGENT_GUARD_ENV = `${ENV_PREFIX}_WORKFLOW_STAGE_SUBAGENT_GUARD`;\nexport function getEnvNames(name: string): string[] {\n\tif (ENV_PREFIX === LEGACY_ENV_PREFIX || !name.startsWith(`${ENV_PREFIX}_`)) return [name];\n\treturn [name, `${LEGACY_ENV_PREFIX}_${name.slice(ENV_PREFIX.length + 1)}`];\n}\n\nexport function getEnvValue(name: string): string | undefined {\n\tfor (const candidate of getEnvNames(name)) {\n\t\tconst value = process.env[candidate];\n\t\tif (value !== undefined) return value;\n\t}\n\treturn undefined;\n}\n\nexport function hasEnvValue(name: string): boolean {\n\treturn getEnvValue(name) !== undefined;\n}\n\nexport function setEnvValue(name: string, value: string): void {\n\tprocess.env[name] = value;\n}\n\nexport function expandTildePath(path: string): string {\n\treturn normalizePath(path);\n}\n\nconst DEFAULT_SHARE_VIEWER_URL = \"https://pi.dev/session/\";\n\nexport const VERSION_ADOPTION_ENDPOINT =\n\t\"https://atomic-version-adoption.bastani-atomic.workers.dev/v1/version-adoption\";\n\n/** Get the share viewer URL for a gist ID */\nexport function getShareViewerUrl(gistId: string): string {\n\tconst baseUrl = getEnvValue(ENV_SHARE_VIEWER_URL) || DEFAULT_SHARE_VIEWER_URL;\n\treturn `${baseUrl}#${gistId}`;\n}\n\n// =============================================================================\n// User Config Paths (~/.atomic/agent/*)\n// =============================================================================\n\n/** Get the agent config directory (e.g., ~/.atomic/agent/) */\nexport function getAgentDir(): string {\n\tconst envDir = getEnvValue(ENV_AGENT_DIR);\n\tif (envDir) {\n\t\treturn expandTildePath(envDir);\n\t}\n\treturn join(getHomeDir(), CONFIG_DIR_NAME, \"agent\");\n}\n\n/** Get the legacy pi agent config directory (e.g., ~/.pi/agent/) */\nexport function getLegacyAgentDir(): string {\n\treturn join(getHomeDir(), LEGACY_CONFIG_DIR_NAME, \"agent\");\n}\n\n/** Get agent config directories in precedence order (primary first, then legacy). */\nexport function getAgentDirs(): string[] {\n\tconst primary = getAgentDir();\n\tif (hasEnvValue(ENV_AGENT_DIR) || CONFIG_DIR_NAME === LEGACY_CONFIG_DIR_NAME) {\n\t\treturn [primary];\n\t}\n\tconst legacy = getLegacyAgentDir();\n\treturn legacy === primary ? [primary] : [primary, legacy];\n}\n\n/** Get user config root directories in precedence order (primary first, then legacy). */\nexport function getUserConfigDirs(): string[] {\n\treturn CONFIG_DIR_NAMES.map((name) => join(getHomeDir(), name));\n}\n\n/** Get project config directories in precedence order (primary first, then legacy). */\nexport function getProjectConfigDirs(cwd: string): string[] {\n\treturn CONFIG_DIR_NAMES.map((name) => join(cwd, name));\n}\n\n/** Get a path inside every user config root directory. */\nexport function getUserConfigPaths(...segments: string[]): string[] {\n\treturn getUserConfigDirs().map((dir) => join(dir, ...segments));\n}\n\n/** Get a path inside every agent config directory. */\nexport function getAgentConfigPaths(...segments: string[]): string[] {\n\treturn getAgentDirs().map((dir) => join(dir, ...segments));\n}\n\n/** Get a path inside every project config directory. */\nexport function getProjectConfigPaths(cwd: string, ...segments: string[]): string[] {\n\treturn getProjectConfigDirs(cwd).map((dir) => join(dir, ...segments));\n}\n\n/** Model config paths from highest to lowest precedence: Atomic project/global, then Pi project/global. */\nexport function getModelsConfigPaths(cwd: string, agentDir: string = getAgentDir(), includeProject = true): string[] {\n\tconst globalPaths =\n\t\tagentDir === getAgentDir() ? getAgentConfigPaths(\"models.json\") : [join(agentDir, \"models.json\")];\n\tif (!includeProject) return globalPaths;\n\tconst projectPaths = getProjectConfigPaths(cwd, \"models.json\");\n\tconst paths: string[] = [];\n\tfor (let index = 0; index < Math.max(projectPaths.length, globalPaths.length); index++) {\n\t\tif (projectPaths[index]) paths.push(projectPaths[index]);\n\t\tif (globalPaths[index]) paths.push(globalPaths[index]);\n\t}\n\treturn [...new Set(paths)];\n}\n\n/** Get path to user's custom themes directory */\nexport function getCustomThemesDir(): string {\n\treturn join(getAgentDir(), \"themes\");\n}\n\n/** Get path to models.json */\nexport function getModelsPath(): string {\n\treturn join(getAgentDir(), \"models.json\");\n}\n\n/** Get path to auth.json */\nexport function getAuthPath(): string {\n\treturn join(getAgentDir(), \"auth.json\");\n}\n\n/** Get path to settings.json */\nexport function getSettingsPath(): string {\n\treturn join(getAgentDir(), \"settings.json\");\n}\n\n/** Get path to tools directory */\nexport function getToolsDir(): string {\n\treturn join(getAgentDir(), \"tools\");\n}\n\n/** Get path to managed binaries directory (fd, rg) */\nexport function getBinDir(): string {\n\treturn join(getAgentDir(), \"bin\");\n}\n\nconst EXTENSION_TRANSPILE_CACHE_FORMAT = \"ts-source-specifiers\";\n\n/**\n * Get path to the extension transpile cache directory (jiti fsCache).\n * Scoped by version and transform format so neither a release upgrade nor a\n * loader transform change reads stale transpiled output.\n */\nexport function getExtensionTranspileCacheDir(): string {\n\treturn join(getAgentDir(), \"cache\", \"jiti\", `${VERSION}+${EXTENSION_TRANSPILE_CACHE_FORMAT}`);\n}\n\n/** Get path to prompt templates directory */\nexport function getPromptsDir(): string {\n\treturn join(getAgentDir(), \"prompts\");\n}\n\n/** Get path to sessions directory */\nexport function getSessionsDir(): string {\n\treturn join(getAgentDir(), \"sessions\");\n}\n\n/** Get path to debug log file */\nexport function getDebugLogPath(): string {\n\treturn join(getAgentDir(), `${APP_NAME}-debug.log`);\n}\n"]}

package/dist/core/agent-session-extension-bindings.d.ts.map

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package/dist/core/agent-session-extension-bindings.js

@@ -13,6 +13,7 @@ import { isSelectedNativeMcpTool } from "./mcp-child-policy.js";
 import { ModelRegistry } from "./model-registry.js";
 import { abortSessionWork, assertSessionOpen, drainSessionWork, hasSessionReload, renewSessionWork, retireSessionReloadGeneration, sessionGenerationClosing, trackSessionReload, trackSessionWork, } from "./session-lifecycle-work.js";
 import { completeStartup, rollbackStartup } from "./session-startup-rollback.js";
+import { applyToolModifiers } from "./settings-merge.js";
 import { getSkillCatalog } from "./skill-catalog.js";
 import { createSyntheticSourceInfo } from "./source-info.js";
 import { isRegisteredToolAllowed, isToolActivatable } from "./tool-selection.js";
@@ -702,7 +703,7 @@ async function reloadOwnedGeneration(retainedRuntimes, options) {
         await this.settingsManager.reload();
         resetApiProviders();
         await this._resourceLoader.reload();
-        const defaultTools = this.settingsManager.getDefaultTools() ?? getDefaultToolNames();
+        const defaultTools = applyToolModifiers(this.settingsManager.getDefaultTools() ?? getDefaultToolNames(), this._defaultToolModifiers);
         for (const name of this.getActiveToolNames())
             this._pendingToolNames.add(name);
         this._buildRuntime({
@@ -735,7 +736,7 @@ async function reloadOwnedGeneration(retainedRuntimes, options) {
     }
     const settingsTransaction = await this.settingsManager.prepareReload();
     const resourceTransaction = await prepareResourceReload(settingsTransaction.settingsManager);
-    const defaultTools = settingsTransaction.settingsManager.getDefaultTools() ?? getDefaultToolNames();
+    const defaultTools = applyToolModifiers(settingsTransaction.settingsManager.getDefaultTools() ?? getDefaultToolNames(), this._defaultToolModifiers);
     const errors = resourceTransaction.loader.getExtensions().errors;
     const extensionsResult = resourceTransaction.loader.getExtensions();
     for (const [name, value] of previousFlagValues) {