@bastani/atomic 0.9.28-alpha.2 → 0.9.28-alpha.3

package/CHANGELOG.md

@@ -2,6 +2,33 @@
 
 ## [Unreleased]
 
+## [0.9.28-alpha.3] - 2026-10-07
+
+### Added
+
+- Added OpenAI's GPT-6 Luna classifier through the Decisions API with `OPENAI_API_KEY`, and image input for codemode's `models.classify()` context. See [Classifier models](docs/models.md#use-classifier-models).
+- Added native classification for llama.cpp decision models through `/v1/systemone`. Decision-only models stay out of the chat selector, while chat models keep the next-token classifier fallback. Cached native classifiers remain available after restart.
+- Added exact-name `+name` and `-name` modifiers to CLI `--tools` and SDK `tools`, for example `atomic --tools +codemode,-write`. They change the resolved defaults instead of replacing them and persist across `/reload`.
+
+### Changed
+
+- Changed `atomic mcp login --timeout` to limit the whole sign-in, including requests to the authorization server, instead of only the wait for the browser.
+
+### Fixed
+
+- Fixed a false `Timeout waiting for response to resume_queued_messages` error when you send a message while a paused queue is still waiting for the agent's current turn to finish, and the follow-up `Agent is already processing` error caused by the stale paused state. The resume now waits for the turn instead of giving up after 30 seconds ([#3493](https://github.com/bastani-inc/atomic/issues/3493)).
+- Fixed extension `session_shutdown` handlers being cut off when you quit the interactive CLI. The engine now gets up to 5 seconds to finish extension shutdown, instead of about 750 ms, before it is force-stopped.
+- Fixed slow extension loading and `/reload` on Windows. Imports such as `./helper.js` that point at TypeScript sources no longer make the loader try hundreds of missing files before finding `helper.ts`.
+- Fixed `/mcp` waiting for startup connections before opening. The manager now updates live and stays usable while enabling, disabling, or reconnecting servers.
+- Fixed images being dropped as unresizable under `node --watch` when Node sends its own messages on the image resize worker channel.
+- Fixed codemode's tool description omitting `await` for `searchTools()`, `describeTool()`, and `describeNamespace()`, which could make scripts return unresolved promises instead of tool information.
+- Fixed slash commands and shell-command drafts typed during interactive startup running before Enter, including when launching with `--model` or `--provider`. Enter-terminated input stays ordered and unfinished text remains in the editor.
+- Fixed a stuck MCP server startup blocking re-enabling the server or shutting down after it was disabled.
+- Fixed clipboard paste doing nothing in Termux, and failed copies there omitting the Termux:API install hint.
+- Fixed `!` and RPC `bash` output keeping fragments of color codes, such as a stray `m`, when a code was split across output chunks.
+- Fixed MCP OAuth sign-ins that could not be cancelled while waiting on the authorization server and kept running after the session ended. The sign-in screen now cancels with Esc at every step, session shutdown aborts a running sign-in, and each request to the authorization server times out after 15 seconds.
+- Fixed shutdown waiting up to 15 seconds to refresh an MCP OAuth token that was about to expire, only to close the server's session.
+
 ## [0.9.28-alpha.2] - 2026-10-07
 
 ### Added

package/dist/builtin/intercom/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/intercom",
-  "version": "0.9.28-alpha.2",
+  "version": "0.9.28-alpha.3",
   "private": true,
   "description": "Atomic extension providing a private coordination channel between parent and child agent sessions. Fork of: https://github.com/nicobailon/pi-intercom",
   "contributors": [

package/dist/builtin/mcp/native-client-licenses/NOTICE

@@ -6,6 +6,8 @@ Relative TypeScript imports use .js extensions for Atomic's compiled package.
 Atomic patches OAuth discovery to refresh changed authorization-server metadata.
 OAuth client metadata documents and exact callback path checks are ported from
 1499466d8581035a4dec6c869725b8712aea4bbe. Atomic does not use Pi's hosted client identity.
+OAuth request cancellation and session close without a token refresh are ported from
+f10993bc7f28145df1375f3ff39c7f5c4cfc05f0.
 Upstream's license is reproduced below. The additional MCP TypeScript SDK
 notice is retained in LICENSES/modelcontextprotocol-typescript-sdk.txt.
 

package/dist/builtin/mcp/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/mcp",
-  "version": "0.9.28-alpha.2",
+  "version": "0.9.28-alpha.3",
   "private": true,
   "description": "Atomic's pi-compatible MCP integration for server connections, OAuth, tools, resources, and terminal management.",
   "contributors": [

package/dist/builtin/subagents/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/subagents",
-  "version": "0.9.28-alpha.2",
+  "version": "0.9.28-alpha.3",
   "private": true,
   "description": "Atomic extension for delegating tasks to subagents with parallel execution. Fork of: https://github.com/nicobailon/pi-subagents",
   "contributors": [

package/dist/builtin/web-access/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/web-access",
-  "version": "0.9.28-alpha.2",
+  "version": "0.9.28-alpha.3",
   "private": true,
   "description": "Atomic extension for web search, URL fetching, GitHub repo cloning, PDF/video extraction. Fork of: https://github.com/nicobailon/pi-web-access",
   "contributors": [

package/dist/builtin/workflows/CHANGELOG.md

@@ -6,6 +6,17 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 
 ## [Unreleased]
 
+## [0.9.28-alpha.3] - 2026-10-07
+
+### Changed
+
+- Changed the `resumeInFlight` default from `"ask"` to `"never"`. Atomic no longer prompts at startup to resume interrupted durable workflows; resume them with `/workflow resume`, or set `resumeInFlight` to `"ask"` or `"auto"` in the workflow config to restore startup recovery.
+
+### Fixed
+
+- Fixed Atomic hanging at startup, never accepting input, when the current directory had interrupted durable workflows and `resumeInFlight` was `ask`. Startup no longer waits for workflow recovery; the "Resume interrupted workflows?" prompt now appears after the session is ready.
+- Fixed startup recovery and SDK crash recovery skipping interrupted workflows when the project directory was reached through a symlink, such as `/tmp` or `/var` on macOS.
+
 ## [0.9.28-alpha.2] - 2026-10-07
 
 ### Added

package/dist/builtin/workflows/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/workflows",
-  "version": "0.9.28-alpha.2",
+  "version": "0.9.28-alpha.3",
   "private": true,
   "description": "Atomic extension for multi-stage workflow authoring and execution.",
   "contributors": [