@bastani/atomic 0.9.16-alpha.7 → 0.9.16-alpha.9

package/dist/builtin/web-access/index.bundle.mjs

@@ -3860,10 +3860,10 @@ function hasAssistantMessage(entries) {
   return entries.some((entry) => entry.type === "message" && entry.message.role === "assistant");
 }
 function persistAppendedEntry(filePath, entries, entry, flushed) {
-  if (!hasAssistantMessage(entries))
-    return false;
   if (flushed)
     appendSessionEntry(filePath, entry);
+  else if (!hasAssistantMessage(entries))
+    return false;
   else
     appendSessionEntries(filePath, entries);
   return true;
@@ -9931,6 +9931,8 @@ function appendDurableDisplayCard(session, message, delivery) {
   const card = { ...message, excludeFromContext: true };
   const admitted = message;
   const intentEntryId = session.sessionManager.appendCustomMessageEntry(card.customType, card.content, card.display, card.details, true, { delivery }, admitted.stageAdmissionKey);
+  if (admitted.stageAdmissionKey !== undefined)
+    session.sessionManager.flush();
   session.agent.state.messages.push(card);
   return { card, intentEntryId };
 }
@@ -10156,12 +10158,17 @@ var init_agent_session_persistent_custom_messages = __esm(() => {
 });
 
 // src/core/agent-session-custom-message-commit.ts
+function appendDurableStageAdmission(session, message) {
+  session._appendCustomMessage(message);
+  if (message.stageAdmissionKey !== undefined)
+    session.sessionManager?.flush();
+}
 async function commitAdmittedCustomMessage(session, appMessage, options) {
   const owner = resolveWorkflowStageDeliveryTarget(session);
   if (owner !== session)
     return commitAdmittedCustomMessage(owner, appMessage, options);
   const self = session;
-  const useProtectedReconciliation = options?.persistWhenStreaming === true && options.triggerTurn === true && options.excludeFromContext !== true;
+  const useProtectedReconciliation = options?.persistWhenStreaming === true && options.excludeFromContext !== true && (options.triggerTurn === true || options.stageAdmissionKey !== undefined);
   if (options?.deliverAs === "nextTurn") {
     self._pendingNextTurnMessages.push(appMessage);
   } else if (self._queuedMessagesPaused) {
@@ -10175,20 +10182,20 @@ async function commitAdmittedCustomMessage(session, appMessage, options) {
     } else if (self.isStreaming) {
       self._pendingCustomMessages.push(appMessage);
     } else {
-      self._appendCustomMessage(appMessage);
+      appendDurableStageAdmission(self, appMessage);
     }
   } else if (options?.deliverAs === "interrupt" && options.triggerTurn) {
     const interrupt = self._enqueueInterruptCustomMessage(appMessage, options);
     self._workflowStageAdmission?.trackAdmittedWork(interrupt);
     interrupt.catch(() => {});
   } else if (self.isStreaming && options?.excludeFromContext === true && options.triggerTurn !== true && options.deliverAs === undefined) {
-    self._appendCustomMessage(appMessage);
+    appendDurableStageAdmission(self, appMessage);
   } else if (self.isStreaming && options?.triggerTurn === false) {
     self._pendingCustomMessages.push(appMessage);
   } else if (self.isStreaming && useProtectedReconciliation) {
     await queueProtectedStreamingCustomMessage(self, appMessage, options?.deliverAs === "followUp" ? "followUp" : "steer");
   } else if (self.isStreaming && options?.persistWhenStreaming === true) {
-    self._appendCustomMessage(appMessage);
+    appendDurableStageAdmission(self, appMessage);
   } else if (self.isStreaming && options?.triggerTurn !== false) {
     self._queueAgentMessage(appMessage, options?.deliverAs === "followUp" ? "followUp" : "steer");
   } else if (options?.triggerTurn) {
@@ -10211,7 +10218,7 @@ async function commitAdmittedCustomMessage(session, appMessage, options) {
       self._continueQueuedAgentMessages().catch(() => {});
     }
   } else {
-    self._appendCustomMessage(appMessage);
+    appendDurableStageAdmission(self, appMessage);
   }
 }
 function _commitAdmittedCustomMessage(appMessage, options) {
@@ -12235,6 +12242,8 @@ class ExtensionRunner {
   shortcutDiagnostics = [];
   commandDiagnostics = [];
   staleMessage;
+  uiPromptBinding = 0;
+  activeUIPrompt;
   constructor(extensions, runtime, cwd, sessionManager, modelRegistry, orchestrationContext, subagentPolicy) {
     this.extensions = extensions;
     this.runtime = runtime;
@@ -12329,9 +12338,71 @@ class ExtensionRunner {
     this.reloadHandler = async () => {};
   }
   setUIContext(uiContext, mode = "print") {
-    this.uiContext = uiContext ?? noOpUIContext;
+    this.endActiveUIPrompt();
+    const binding = ++this.uiPromptBinding;
+    this.uiContext = uiContext ? this.wrapUIPromptContext(uiContext, binding) : noOpUIContext;
     this.mode = mode;
   }
+  wrapUIPromptContext(ui, binding) {
+    return {
+      ...ui,
+      select: (title, options, opts) => this.withUIPrompt(binding, "select", title, () => ui.select(title, options, opts)),
+      confirm: (title, message, opts) => this.withUIPrompt(binding, "confirm", title, () => ui.confirm(title, message, opts)),
+      input: (title, placeholder, opts) => this.withUIPrompt(binding, "input", title, () => ui.input(title, placeholder, opts)),
+      editor: (title, prefill, opts) => this.withUIPrompt(binding, "editor", title, () => ui.editor(title, prefill, opts)),
+      custom: (factory, options) => this.withUIPrompt(binding, "custom", undefined, () => ui.custom(factory, options))
+    };
+  }
+  withUIPrompt(binding, kind, title, run) {
+    if (binding !== this.uiPromptBinding)
+      return run();
+    let prompt = this.activeUIPrompt;
+    if (!prompt) {
+      prompt = { depth: 0, kind, title };
+      this.activeUIPrompt = prompt;
+      this.emitUIPromptEvent({
+        type: "ui_prompt_start",
+        reason: "ui_prompt",
+        kind,
+        ...title === undefined ? {} : { title }
+      });
+    }
+    prompt.depth += 1;
+    let finished = false;
+    const finish = () => {
+      if (finished)
+        return;
+      finished = true;
+      if (this.activeUIPrompt !== prompt)
+        return;
+      prompt.depth -= 1;
+      if (prompt.depth === 0)
+        this.endActiveUIPrompt(prompt);
+    };
+    try {
+      return run().finally(finish);
+    } catch (error) {
+      finish();
+      throw error;
+    }
+  }
+  endActiveUIPrompt(prompt = this.activeUIPrompt) {
+    if (!prompt || this.activeUIPrompt !== prompt)
+      return;
+    this.activeUIPrompt = undefined;
+    prompt.depth = 0;
+    this.emitUIPromptEvent({
+      type: "ui_prompt_end",
+      reason: "ui_prompt",
+      kind: prompt.kind,
+      ...prompt.title === undefined ? {} : { title: prompt.title }
+    });
+  }
+  emitUIPromptEvent(event) {
+    queueMicrotask(() => {
+      this.emit(event);
+    });
+  }
   getUIContext() {
     return this.uiContext;
   }
@@ -21613,11 +21684,20 @@ import {
 function isCodexFastModeSupportedProvider(provider) {
   return provider === "openai" || provider === "openai-codex";
 }
-function isCodexFastModeSupportedModel(model) {
-  return isCodexFastModeSupportedProvider(model.provider) || model.api === "openai-codex-responses";
+function isGitHubCopilotModel(model) {
+  return model.provider === "github-copilot";
+}
+function isGitHubCopilotFastModeSupportedModel(model, credential) {
+  if (!isGitHubCopilotModel(model) || credential?.type !== "oauth")
+    return false;
+  const fastModelIds = credential.fastModelIds;
+  return Array.isArray(fastModelIds) && fastModelIds.every((modelId) => typeof modelId === "string") && fastModelIds.includes(`${model.id}-fast`);
+}
+function isCodexFastModeSupportedModel(model, copilotCredential) {
+  return isCodexFastModeSupportedProvider(model.provider) || model.api === "openai-codex-responses" || model.id !== undefined && isGitHubCopilotFastModeSupportedModel({ provider: model.provider, id: model.id }, copilotCredential);
 }
-function hasSupportedCodexFastModeModel(models) {
-  return models.some(isCodexFastModeSupportedModel);
+function hasSupportedCodexFastModeModel(models, copilotCredential) {
+  return models.some((model) => isCodexFastModeSupportedModel(model, copilotCredential));
 }
 function isWorkflowStageOrchestrationContext(context) {
   return context?.kind === "workflow-stage";
@@ -21628,11 +21708,11 @@ function getCodexFastModeScope(context) {
 function isCodexFastModeEnabledForScope(settings, scope) {
   return settings[scope];
 }
-function shouldApplyCodexFastModeForScope(model, settings, scope) {
-  return isCodexFastModeSupportedModel(model) && isCodexFastModeEnabledForScope(settings, scope);
+function shouldApplyCodexFastModeForScope(model, settings, scope, copilotCredential) {
+  return isCodexFastModeSupportedModel(model, copilotCredential) && isCodexFastModeEnabledForScope(settings, scope);
 }
-function shouldApplyCodexFastMode(model, settings, context) {
-  return shouldApplyCodexFastModeForScope(model, settings, getCodexFastModeScope(context));
+function shouldApplyCodexFastMode(model, settings, context, copilotCredential) {
+  return shouldApplyCodexFastModeForScope(model, settings, getCodexFastModeScope(context), copilotCredential);
 }
 function formatCodexFastModeModelLabel(modelName, enabled) {
   return enabled ? `${modelName} fast` : modelName;
@@ -21773,7 +21853,7 @@ class FooterComponent {
       pwd += ` • ${sessionName}`;
     const modelName = state.model?.id || "no-model";
     const fastModeSettings = this.session.settingsManager.getCodexFastModeSettings();
-    const fastModeEnabled = state.model ? shouldApplyCodexFastMode(state.model, fastModeSettings, this.session.orchestrationContext) : false;
+    const fastModeEnabled = state.model ? shouldApplyCodexFastMode(state.model, fastModeSettings, this.session.orchestrationContext, this.session.modelRuntime.getCredentialSnapshot?.("github-copilot")) : false;
     let modelLabel2 = modelName;
     if (state.model?.reasoning) {
       const thinkingLevel = state.thinkingLevel || "off";
@@ -39361,14 +39441,18 @@ import { AsyncLocalStorage } from "node:async_hooks";
 
 class WorkflowStageAdmissionBoundary {
   open = true;
-  completed = new Set;
+  completed;
   inFlight = new Map;
   pending = new Set;
   invocationContext = new AsyncLocalStorage;
   closePromise;
   drainAdmittedWork;
-  constructor(drainAdmittedWork = async () => {}) {
-    this.drainAdmittedWork = drainAdmittedWork;
+  constructor(drainAdmittedWork = undefined, completedKeys = []) {
+    this.drainAdmittedWork = drainAdmittedWork ?? (async () => {});
+    this.completed = new Set(completedKeys);
+  }
+  static restore(entries, drainAdmittedWork) {
+    return new WorkflowStageAdmissionBoundary(drainAdmittedWork, Array.from(entries).flatMap((entry) => entry.type === "custom_message" && typeof entry.stageAdmissionKey === "string" ? [entry.stageAdmissionKey] : []));
   }
   admit(key, deliver, routeLate) {
     if (key !== undefined) {
@@ -39607,7 +39691,7 @@ class AgentSessionBase {
     this._subagentPolicy = config.subagentPolicy;
     this._systemPromptTransform = config.systemPromptTransform;
     const stageContext = config.orchestrationContext?.kind === "workflow-stage" ? config.orchestrationContext : undefined;
-    this._workflowStageAdmission = stageContext?.messageAdmission?.boundary ?? (stageContext ? new WorkflowStageAdmissionBoundary : undefined);
+    this._workflowStageAdmission = stageContext?.messageAdmission?.boundary ?? (stageContext ? WorkflowStageAdmissionBoundary.restore(this.sessionManager.getBranch()) : undefined);
     if (this._workflowStageAdmission && stageContext && stageContext.messageAdmission === undefined) {
       stageContext.messageAdmission = {
         boundary: this._workflowStageAdmission,
@@ -46559,6 +46643,31 @@ class RemoteQueuePause {
 var init_remote_queue_pause = () => {};
 
 // src/modes/interactive-engine/isolated-runtime.ts
+import { clampThinkingLevel as clampThinkingLevel5 } from "@bastani/pi-ai/compat";
+function applyPersistedModelDefault(session, model, alreadyInScope) {
+  session.settingsManager.setDefaultModelAndProvider(model.provider, model.id);
+  if (alreadyInScope || session.scopedModels.length === 0)
+    return;
+  const enabledModels = session.settingsManager.getEnabledModels();
+  if (!enabledModels?.length)
+    return;
+  const modelReference = `${model.provider}/${model.id}`;
+  if (enabledModels.some((pattern) => pattern.toLowerCase() === modelReference.toLowerCase()))
+    return;
+  session.settingsManager.setEnabledModels([...enabledModels, modelReference]);
+}
+function thinkingPersistTarget(result) {
+  if (!result.provider || !result.modelId)
+    return;
+  return { provider: result.provider, modelId: result.modelId };
+}
+function applyPersistedThinkingDefault(session, level, target) {
+  if (target) {
+    session.settingsManager.setModelThinkingLevel(target.provider, target.modelId, level);
+    return;
+  }
+  session.settingsManager.setDefaultThinkingLevel(level);
+}
 var IsolatedInteractiveRuntime;
 var init_isolated_runtime = __esm(() => {
   init_agent_session_runtime();
@@ -46577,6 +46686,7 @@ var init_isolated_runtime = __esm(() => {
     steeringMessages = [];
     followUpMessages = [];
     queueUpdateGeneration = 0;
+    thinkingEpoch = 0;
     pendingQueueClear;
     engineCallbackActive = false;
     queuePause;
@@ -46941,43 +47051,56 @@ var init_isolated_runtime = __esm(() => {
         },
         setModel: {
           configurable: true,
-          value: async (model) => {
-            const selected = await this.client.setModel(model.provider, model.id);
-            session.agent.state.model = session.modelRuntime.getModel(selected.provider, selected.id) ?? model;
+          value: async (model, options) => {
+            const selected = await this.client.setModel(model.provider, model.id, options);
+            const nextModel = session.modelRuntime.getModel(selected.provider, selected.id) ?? model;
+            session.agent.state.model = nextModel;
             this.resolveModelFallback();
+            if (options?.persist === true)
+              await this.syncPersistedModelCatalog(session, nextModel);
           }
         },
         setThinkingLevel: {
           configurable: true,
-          value: (level) => {
-            session.agent.state.thinkingLevel = level;
-            this.dispatchBestEffort("set thinking level", this.client.setThinkingLevel(level));
+          value: (level, options) => {
+            const availableLevels = session.getAvailableThinkingLevels();
+            const effectiveLevel = availableLevels.includes(level) ? level : session.model ? clampThinkingLevel5(session.model, level) : "off";
+            session.agent.state.thinkingLevel = effectiveLevel;
+            const epoch = ++this.thinkingEpoch;
+            this.dispatchBestEffort("set thinking level", this.client.setThinkingLevelAck(level, options).then((result) => {
+              this.applyThinkingAck(session, epoch, result, options?.persist === true);
+            }));
           }
         },
         cycleModel: {
           configurable: true,
-          value: async (direction) => {
+          value: async (direction, options) => {
             const previousModel = session.model;
-            const result = await this.client.cycleModel(direction);
+            const result = await this.client.cycleModel(direction, options);
             if (!result)
               return;
             const model = session.modelRuntime.getModel(result.model.provider, result.model.id) ?? result.model;
             session.agent.state.model = model;
             session.agent.state.thinkingLevel = result.thinkingLevel;
             this.resolveModelFallbackAfterExplicitModelSelection(previousModel, model);
+            if (options?.persist === true)
+              await this.syncPersistedModelCatalog(session, model);
             return { ...result, model };
           }
         },
         cycleThinkingLevel: {
           configurable: true,
-          value: () => {
+          value: (options) => {
             const levels = session.getAvailableThinkingLevels();
             if (levels.length <= 1)
               return;
             const current = levels.indexOf(session.thinkingLevel);
             const level = levels[(current + 1) % levels.length];
             session.agent.state.thinkingLevel = level;
-            this.dispatchBestEffort("cycle thinking level", this.client.setThinkingLevel(level));
+            const epoch = ++this.thinkingEpoch;
+            this.dispatchBestEffort("cycle thinking level", this.client.setThinkingLevelAck(level, options).then((result) => {
+              this.applyThinkingAck(session, epoch, result, options?.persist === true);
+            }));
             return level;
           }
         },
@@ -47021,6 +47144,14 @@ var init_isolated_runtime = __esm(() => {
         this.engineCallbackActive = false;
       }
     }
+    applyThinkingAck(session, epoch, result, persist) {
+      if (persist) {
+        applyPersistedThinkingDefault(session, result.level, thinkingPersistTarget(result));
+      }
+      if (epoch === this.thinkingEpoch) {
+        session.agent.state.thinkingLevel = result.level;
+      }
+    }
     dispatchBestEffort(label, operation) {
       operation.catch((error) => {
         if (this.health.isRecovering())
@@ -47061,6 +47192,12 @@ var init_isolated_runtime = __esm(() => {
         }
       });
     }
+    async syncPersistedModelCatalog(session, model) {
+      const alreadyInScope = session.scopedModels.some((scoped) => scoped.model.provider === model.provider && scoped.model.id === model.id);
+      const catalog = await this.client.requestInternal({ type: "get_available_models" });
+      this.remoteModelCatalog.apply(catalog);
+      applyPersistedModelDefault(session, model, alreadyInScope);
+    }
     refreshSessionView() {
       const session = super.session;
       const sessionFile = session.sessionFile;
@@ -47100,6 +47237,7 @@ var init_isolated_runtime = __esm(() => {
           session.agent.state.model = event.model;
           break;
         case "thinking_level_changed":
+          this.thinkingEpoch += 1;
           session.agent.state.thinkingLevel = event.level;
           break;
         case "session_info_changed":
@@ -48313,7 +48451,7 @@ var init_slash_commands = __esm(() => {
     { name: "tree", description: "Navigate session tree (switch branches)" },
     { name: "thinking", description: "Set thinking level", argumentHint: "<level>" },
     { name: "scoped-models", description: "Enable/disable models for ctrl+p cycling" },
-    { name: "fast", description: "Configure Codex fast mode for chat and workflows" },
+    { name: "fast", description: "Configure OpenAI fast mode for chat and workflows in supported models" },
     { name: "export", description: "Export session (HTML default, or specify path: .html/.jsonl)" },
     { name: "import", description: "Import and resume a session from a JSONL file" },
     { name: "share", description: "Share session as a secret GitHub gist" },
@@ -49765,7 +49903,7 @@ var init_interactive_autocomplete = __esm(() => {
     return [...this.session.modelRuntime.getAvailableSnapshot()];
   };
   InteractiveModeBase.prototype.hasCodexFastModeSupportedModels = function() {
-    return hasSupportedCodexFastModeModel(this.getCodexFastModeCandidateModels());
+    return hasSupportedCodexFastModeModel(this.getCodexFastModeCandidateModels(), this.session.modelRuntime.getCredentialSnapshot?.("github-copilot"));
   };
   InteractiveModeBase.prototype.buildRemoteSlashCommands = function(localCommands) {
     const remote = getInteractiveEngineRemoteCommands(this.runtimeHost);
@@ -50453,7 +50591,7 @@ var init_interactive_startup = __esm(() => {
     if (!model) {
       return modelLabel2;
     }
-    const fastModeEnabled = shouldApplyCodexFastMode(model, this.session.settingsManager.getCodexFastModeSettings(), this.session.orchestrationContext);
+    const fastModeEnabled = shouldApplyCodexFastMode(model, this.session.settingsManager.getCodexFastModeSettings(), this.session.orchestrationContext, this.session.modelRuntime.getCredentialSnapshot?.("github-copilot"));
     return formatCodexFastModeModelLabel(modelLabel2, fastModeEnabled);
   };
   InteractiveModeBase.prototype.getStartupIdentityText = function(maxWidth, gap = 0, manifestoPhase = 4) {
@@ -51379,7 +51517,7 @@ var init_interactive_extension_runtime = __esm(() => {
     if (shortcuts.size === 0)
       return;
     const createContext = () => ({
-      ui: this.createExtensionUIContext(),
+      ui: extensionRunner.getUIContext(),
       mode: "tui",
       hasUI: true,
       cwd: this.sessionManager.getCwd(),
@@ -54968,7 +55106,7 @@ var init_interactive_selectors = __esm(() => {
 });
 
 // src/modes/interactive/interactive-model-routing.ts
-import { clampThinkingLevel as clampThinkingLevel5 } from "@bastani/pi-ai/compat";
+import { clampThinkingLevel as clampThinkingLevel6 } from "@bastani/pi-ai/compat";
 function resolveThinkingSelectorDefault(rawDefault, availableLevels, model) {
   if (rawDefault === undefined)
     return;
@@ -54976,7 +55114,7 @@ function resolveThinkingSelectorDefault(rawDefault, availableLevels, model) {
     return rawDefault;
   if (!model)
     return availableLevels.includes("off") ? "off" : availableLevels[0];
-  const clamped = clampThinkingLevel5(model, rawDefault);
+  const clamped = clampThinkingLevel6(model, rawDefault);
   if (availableLevels.includes(clamped))
     return clamped;
   return availableLevels.includes("off") ? "off" : availableLevels[0];

package/dist/builtin/web-access/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@bastani/web-access",
-  "version": "0.9.16-alpha.7",
+  "version": "0.9.16-alpha.9",
   "private": true,
   "description": "Atomic extension for web search, URL fetching, GitHub repo cloning, PDF/video extraction. Fork of: https://github.com/nicobailon/pi-web-access",
   "contributors": [

package/dist/builtin/workflows/CHANGELOG.md

@@ -6,6 +6,21 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 
 ## [Unreleased]
 
+## [0.9.16-alpha.8] - 2026-08-27
+
+### Added
+
+- Added a dedicated `workflow answer` action for responding to pending primitive and structured human-in-the-loop prompts without exposing stage-message delivery semantics.
+- Added durable pending-stage message state for ordinary Intercom delivery, including FIFO delivery before the first model turn, resume/replay persistence, exactly-once stage-attempt handling, lifecycle failure notifications, and guidance for propagating material updates to known workflow stages that have not started. ([#2717](https://github.com/bastani-inc/atomic/issues/2717))
+
+### Changed
+
+- Periodic workflow heartbeat prompts now guide supervising agents to use ordinary Intercom when steering or communication is useful, match an update's reach to the expanded workflow topology, send shared scope or acceptance changes consistently across every relevant live and known unstarted worker/reviewer stage, account for immediate and queued pre-first-turn delivery, and use workflow pause, resume, interrupt, or quit for run control.
+
+### Removed
+
+- Removed the public `workflow send` action and its stage-chat delivery modes. Use `workflow answer` for pending human-input prompts, `workflow resume` for paused control, and ordinary Intercom for live or deferred workflow-stage communication.
+
 ## [0.9.16-alpha.7] - 2026-08-26
 
 ### Changed