@bastani/atomic 0.9.13 → 0.9.14-alpha.2

package/dist/utils/tools-manager.js

@@ -1,4 +1,3 @@
-import chalk from "chalk";
 import { spawnSync } from "child_process";
 import { chmodSync, existsSync, mkdirSync, readdirSync, renameSync, rmSync } from "fs";
 import { writeFile } from "fs/promises";
@@ -276,9 +275,17 @@ const TERMUX_PACKAGES = {
     fd: "fd",
     rg: "ripgrep",
 };
-// Ensure a tool is available, downloading if necessary
-// Returns the path to the tool, or null if unavailable
-export async function ensureTool(tool, silent = false) {
+/**
+ * Ensure a tool is available, downloading if necessary.
+ *
+ * Progress and problems are reported through `onStatus`; the function never
+ * writes to the console itself, because in a fullscreen session a console
+ * write lands in the alternate screen and corrupts the frame. Callers without
+ * a status sink stay silent.
+ *
+ * Returns the tool path, or undefined if unavailable.
+ */
+export async function ensureTool(tool, onStatus) {
     const existingPath = getToolPath(tool);
     if (existingPath) {
         return existingPath;
@@ -287,35 +294,28 @@ export async function ensureTool(tool, silent = false) {
     if (!config)
         return undefined;
     if (isOfflineModeEnabled()) {
-        if (!silent) {
-            console.log(chalk.yellow(`${config.name} not found. Offline mode enabled, skipping download.`));
-        }
+        onStatus?.({ type: "warning", message: `${config.name} not found. Offline mode enabled, skipping download.` });
         return undefined;
     }
     // On Android/Termux, Linux binaries don't work due to Bionic libc incompatibility.
     // Users must install via pkg.
     if (platform() === "android") {
         const pkgName = TERMUX_PACKAGES[tool] ?? tool;
-        if (!silent) {
-            console.log(chalk.yellow(`${config.name} not found. Install with: pkg install ${pkgName}`));
-        }
+        onStatus?.({ type: "warning", message: `${config.name} not found. Install with: pkg install ${pkgName}` });
         return undefined;
     }
     // Tool not found - download it
-    if (!silent) {
-        console.log(chalk.dim(`${config.name} not found. Downloading...`));
-    }
+    onStatus?.({ type: "info", message: `${config.name} not found. Downloading...` });
     try {
         const path = await downloadTool(tool);
-        if (!silent) {
-            console.log(chalk.dim(`${config.name} installed to ${path}`));
-        }
+        onStatus?.({ type: "info", message: `${config.name} installed to ${path}` });
         return path;
     }
     catch (e) {
-        if (!silent) {
-            console.log(chalk.yellow(`Failed to download ${config.name}: ${e instanceof Error ? e.message : e}`));
-        }
+        onStatus?.({
+            type: "warning",
+            message: `Failed to download ${config.name}: ${e instanceof Error ? e.message : e}`,
+        });
         return undefined;
     }
 }

package/dist/utils/tools-manager.js.map

@@ -1 +1 @@
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Some archives contain files directly\n\t\t// at root, others nest under a versioned subdirectory.\n\t\tconst binaryFileName = config.binaryName + binaryExt;\n\t\tconst extractedDir = join(extractDir, assetName.replace(/\\.(tar\\.gz|zip)$/, \"\"));\n\t\tconst extractedBinaryCandidates = [join(extractedDir, binaryFileName), join(extractDir, binaryFileName)];\n\t\tlet extractedBinary = extractedBinaryCandidates.find((candidate) => existsSync(candidate));\n\n\t\tif (!extractedBinary) {\n\t\t\textractedBinary = findBinaryRecursively(extractDir, binaryFileName) ?? undefined;\n\t\t}\n\n\t\tif (extractedBinary) {\n\t\t\trenameSync(extractedBinary, binaryPath);\n\t\t} else {\n\t\t\tthrow new Error(`Binary not found in archive: expected ${binaryFileName} under ${extractDir}`);\n\t\t}\n\n\t\t// Make executable (Unix only)\n\t\tif (plat !== \"win32\") {\n\t\t\tchmodSync(binaryPath, 0o755);\n\t\t}\n\t} finally {\n\t\t// Cleanup\n\t\trmSync(archivePath, { force: true });\n\t\trmSync(extractDir, { recursive: true, force: true });\n\t}\n\n\treturn binaryPath;\n}\n\n// Termux package names for tools\nconst TERMUX_PACKAGES: Record<string, string> = {\n\tfd: \"fd\",\n\trg: \"ripgrep\",\n};\n\n// Ensure a tool is available, downloading if necessary\n// Returns the path to the tool, or null if unavailable\nexport async function ensureTool(tool: \"fd\" | \"rg\", silent: boolean = false): Promise<string | undefined> {\n\tconst existingPath = getToolPath(tool);\n\tif (existingPath) {\n\t\treturn existingPath;\n\t}\n\n\tconst config = TOOLS[tool];\n\tif (!config) return undefined;\n\n\tif (isOfflineModeEnabled()) {\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.yellow(`${config.name} not found. Offline mode enabled, skipping download.`));\n\t\t}\n\t\treturn undefined;\n\t}\n\n\t// On Android/Termux, Linux binaries don't work due to Bionic libc incompatibility.\n\t// Users must install via pkg.\n\tif (platform() === \"android\") {\n\t\tconst pkgName = TERMUX_PACKAGES[tool] ?? tool;\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.yellow(`${config.name} not found. Install with: pkg install ${pkgName}`));\n\t\t}\n\t\treturn undefined;\n\t}\n\n\t// Tool not found - download it\n\tif (!silent) {\n\t\tconsole.log(chalk.dim(`${config.name} not found. Downloading...`));\n\t}\n\n\ttry {\n\t\tconst path = await downloadTool(tool);\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.dim(`${config.name} installed to ${path}`));\n\t\t}\n\t\treturn path;\n\t} catch (e) {\n\t\tif (!silent) {\n\t\t\tconsole.log(chalk.yellow(`Failed to download ${config.name}: ${e instanceof Error ? e.message : e}`));\n\t\t}\n\t\treturn undefined;\n\t}\n}\n"]}
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[config.binaryName];\n\tfor (const systemBinaryName of systemBinaryNames) {\n\t\tif (commandExists(systemBinaryName)) {\n\t\t\treturn systemBinaryName;\n\t\t}\n\t}\n\n\treturn null;\n}\n\n// Fetch latest release version from GitHub\nasync function getLatestVersion(repo: string): Promise<string> {\n\tconst response = await fetchWithRetry(\n\t\t`https://api.github.com/repos/${repo}/releases/latest`,\n\t\t{\n\t\t\theaders: { \"User-Agent\": APP_NAME },\n\t\t},\n\t\t{ timeoutMs: NETWORK_TIMEOUT_MS },\n\t);\n\n\tif (!response.ok) {\n\t\tthrow new Error(`GitHub API error: ${response.status}`);\n\t}\n\n\tconst data = (await response.json()) as { tag_name: string };\n\treturn data.tag_name.replace(/^v/, \"\");\n}\n\n// Download a file from URL\nasync function downloadFile(url: string, dest: string): Promise<void> {\n\tconst response = await fetchWithRetry(url, undefined, { timeoutMs: DOWNLOAD_TIMEOUT_MS });\n\n\tif (!response.ok) {\n\t\tthrow new Error(`Failed to download: ${response.status}`);\n\t}\n\n\tif (!response.body) {\n\t\tthrow new Error(\"No response body\");\n\t}\n\n\tawait writeFile(dest, Buffer.from(await response.arrayBuffer()));\n}\n\nfunction findBinaryRecursively(rootDir: string, binaryFileName: string): string | null {\n\tconst stack: string[] = [rootDir];\n\n\twhile (stack.length > 0) {\n\t\tconst currentDir = stack.pop();\n\t\tif (!currentDir) continue;\n\n\t\tconst entries = readdirSync(currentDir, { withFileTypes: true });\n\t\tfor (const entry of entries) {\n\t\t\tconst fullPath = join(currentDir, entry.name);\n\t\t\tif (entry.isFile() && entry.name === binaryFileName) {\n\t\t\t\treturn fullPath;\n\t\t\t}\n\t\t\tif (entry.isDirectory()) {\n\t\t\t\tstack.push(fullPath);\n\t\t\t}\n\t\t}\n\t}\n\n\treturn null;\n}\n\nfunction formatSpawnFailure(result: SpawnSyncReturns<Buffer>): string {\n\tif (result.error?.message) {\n\t\treturn result.error.message;\n\t}\n\tconst stderr = result.stderr?.toString().trim();\n\tif (stderr) {\n\t\treturn stderr;\n\t}\n\tconst stdout = result.stdout?.toString().trim();\n\tif (stdout) {\n\t\treturn stdout;\n\t}\n\treturn `exit status ${result.status ?? \"unknown\"}`;\n}\n\nfunction runExtractionCommand(command: string, args: string[]): string | null {\n\tconst result = spawnSync(command, args, { stdio: \"pipe\", env: createChildProcessEnvironment() });\n\tif (!result.error && result.status === 0) {\n\t\treturn null;\n\t}\n\treturn `${command}: ${formatSpawnFailure(result)}`;\n}\n\nfunction extractTarGzArchive(archivePath: string, extractDir: string, assetName: string): void {\n\tconst failure = runExtractionCommand(\"tar\", [\"xzf\", archivePath, \"-C\", extractDir]);\n\tif (failure) {\n\t\tthrow new Error(`Failed to extract ${assetName}: ${failure}`);\n\t}\n}\n\nfunction getWindowsTarCommand(): string {\n\tconst systemRoot = process.env.SystemRoot ?? process.env.WINDIR;\n\tif (systemRoot) {\n\t\tconst systemTar = join(systemRoot, \"System32\", \"tar.exe\");\n\t\tif (existsSync(systemTar)) {\n\t\t\treturn systemTar;\n\t\t}\n\t}\n\treturn \"tar.exe\";\n}\n\nfunction extractZipArchive(archivePath: string, extractDir: string, assetName: string): void {\n\tconst failures: string[] = [];\n\n\tif (platform() === \"win32\") {\n\t\t// Windows ships bsdtar as tar.exe, which supports zip files. Prefer the\n\t\t// System32 binary over Git Bash's GNU tar, which does not handle zip archives.\n\t\tconst tarFailure = runExtractionCommand(getWindowsTarCommand(), [\"xf\", archivePath, \"-C\", extractDir]);\n\t\tif (!tarFailure) return;\n\t\tfailures.push(tarFailure);\n\n\t\tconst script =\n\t\t\t\"& { param($archive, $destination) $ErrorActionPreference = 'Stop'; Expand-Archive -LiteralPath $archive -DestinationPath $destination -Force }\";\n\t\tconst powershellFailure = runExtractionCommand(\"powershell.exe\", [\n\t\t\t\"-NoLogo\",\n\t\t\t\"-NoProfile\",\n\t\t\t\"-NonInteractive\",\n\t\t\t\"-ExecutionPolicy\",\n\t\t\t\"Bypass\",\n\t\t\t\"-Command\",\n\t\t\tscript,\n\t\t\tarchivePath,\n\t\t\textractDir,\n\t\t]);\n\t\tif (!powershellFailure) return;\n\t\tfailures.push(powershellFailure);\n\t} else {\n\t\tconst unzipFailure = runExtractionCommand(\"unzip\", [\"-q\", archivePath, \"-d\", extractDir]);\n\t\tif (!unzipFailure) return;\n\t\tfailures.push(unzipFailure);\n\n\t\tconst tarFailure = runExtractionCommand(\"tar\", [\"xf\", archivePath, \"-C\", extractDir]);\n\t\tif (!tarFailure) return;\n\t\tfailures.push(tarFailure);\n\t}\n\n\tthrow new Error(`Failed to extract ${assetName}: ${failures.join(\"; \")}`);\n}\n\n// Download and install a tool\nasync function downloadTool(tool: \"fd\" | \"rg\"): Promise<string> {\n\tconst config = TOOLS[tool];\n\tif (!config) throw new Error(`Unknown tool: ${tool}`);\n\n\tconst plat = platform();\n\tconst architecture = arch();\n\n\t// Get latest version\n\tconst version = await getLatestVersion(config.repo);\n\n\t// Get asset name for this platform\n\tconst assetName = config.getAssetName(version, plat, architecture);\n\tif (!assetName) {\n\t\tthrow new Error(`Unsupported platform: ${plat}/${architecture}`);\n\t}\n\n\t// Create tools directory\n\tmkdirSync(TOOLS_DIR, { recursive: true });\n\n\tconst downloadUrl = `https://github.com/${config.repo}/releases/download/${config.tagPrefix}${version}/${assetName}`;\n\tconst archivePath = join(TOOLS_DIR, assetName);\n\tconst binaryExt = plat === \"win32\" ? \".exe\" : \"\";\n\tconst binaryPath = join(TOOLS_DIR, config.binaryName + binaryExt);\n\n\t// Download\n\tawait downloadFile(downloadUrl, archivePath);\n\n\t// Extract into a unique temp directory. fd and rg downloads can run concurrently\n\t// during startup, so sharing a fixed directory causes races.\n\tconst extractDir = join(\n\t\tTOOLS_DIR,\n\t\t`extract_tmp_${config.binaryName}_${process.pid}_${Date.now()}_${Math.random().toString(36).slice(2, 10)}`,\n\t);\n\tmkdirSync(extractDir, { recursive: true });\n\n\ttry {\n\t\tif (assetName.endsWith(\".tar.gz\")) {\n\t\t\textractTarGzArchive(archivePath, extractDir, assetName);\n\t\t} else if (assetName.endsWith(\".zip\")) {\n\t\t\textractZipArchive(archivePath, extractDir, assetName);\n\t\t} else {\n\t\t\tthrow new Error(`Unsupported archive format: ${assetName}`);\n\t\t}\n\n\t\t// Find the binary in extracted files. Some archives contain files directly\n\t\t// at root, others nest under a versioned subdirectory.\n\t\tconst binaryFileName = config.binaryName + binaryExt;\n\t\tconst extractedDir = join(extractDir, assetName.replace(/\\.(tar\\.gz|zip)$/, \"\"));\n\t\tconst extractedBinaryCandidates = [join(extractedDir, binaryFileName), join(extractDir, binaryFileName)];\n\t\tlet extractedBinary = extractedBinaryCandidates.find((candidate) => existsSync(candidate));\n\n\t\tif (!extractedBinary) {\n\t\t\textractedBinary = findBinaryRecursively(extractDir, binaryFileName) ?? undefined;\n\t\t}\n\n\t\tif (extractedBinary) {\n\t\t\trenameSync(extractedBinary, binaryPath);\n\t\t} else {\n\t\t\tthrow new Error(`Binary not found in archive: expected ${binaryFileName} under ${extractDir}`);\n\t\t}\n\n\t\t// Make executable (Unix only)\n\t\tif (plat !== \"win32\") {\n\t\t\tchmodSync(binaryPath, 0o755);\n\t\t}\n\t} finally {\n\t\t// Cleanup\n\t\trmSync(archivePath, { force: true });\n\t\trmSync(extractDir, { recursive: true, force: true });\n\t}\n\n\treturn binaryPath;\n}\n\n// Termux package names for tools\nconst TERMUX_PACKAGES: Record<string, string> = {\n\tfd: \"fd\",\n\trg: \"ripgrep\",\n};\n\n/** A managed-tool readiness update, reported to the caller that asked. */\nexport interface ToolStatus {\n\ttype: \"info\" | \"warning\";\n\tmessage: string;\n}\n\n/**\n * Ensure a tool is available, downloading if necessary.\n *\n * Progress and problems are reported through `onStatus`; the function never\n * writes to the console itself, because in a fullscreen session a console\n * write lands in the alternate screen and corrupts the frame. Callers without\n * a status sink stay silent.\n *\n * Returns the tool path, or undefined if unavailable.\n */\nexport async function ensureTool(\n\ttool: \"fd\" | \"rg\",\n\tonStatus?: (status: ToolStatus) => void,\n): Promise<string | undefined> {\n\tconst existingPath = getToolPath(tool);\n\tif (existingPath) {\n\t\treturn existingPath;\n\t}\n\n\tconst config = TOOLS[tool];\n\tif (!config) return undefined;\n\n\tif (isOfflineModeEnabled()) {\n\t\tonStatus?.({ type: \"warning\", message: `${config.name} not found. Offline mode enabled, skipping download.` });\n\t\treturn undefined;\n\t}\n\n\t// On Android/Termux, Linux binaries don't work due to Bionic libc incompatibility.\n\t// Users must install via pkg.\n\tif (platform() === \"android\") {\n\t\tconst pkgName = TERMUX_PACKAGES[tool] ?? tool;\n\t\tonStatus?.({ type: \"warning\", message: `${config.name} not found. Install with: pkg install ${pkgName}` });\n\t\treturn undefined;\n\t}\n\n\t// Tool not found - download it\n\tonStatus?.({ type: \"info\", message: `${config.name} not found. Downloading...` });\n\n\ttry {\n\t\tconst path = await downloadTool(tool);\n\t\tonStatus?.({ type: \"info\", message: `${config.name} installed to ${path}` });\n\t\treturn path;\n\t} catch (e) {\n\t\tonStatus?.({\n\t\t\ttype: \"warning\",\n\t\t\tmessage: `Failed to download ${config.name}: ${e instanceof Error ? e.message : e}`,\n\t\t});\n\t\treturn undefined;\n\t}\n}\n"]}

package/docs/custom-provider.md

@@ -196,7 +196,7 @@ The `api` field determines which streaming implementation is used:
 | `openai-responses` | OpenAI Responses API |
 | `azure-openai-responses` | Azure OpenAI Responses API |
 | `openai-codex-responses` | OpenAI Codex Responses API |
-| `mistral-conversations` | Mistral SDK Conversations/Chat streaming |
+| `mistral-conversations` | Native Mistral Chat Completions streaming |
 | `google-generative-ai` | Google Generative AI API |
 | `google-vertex` | Google Vertex AI API |
 | `bedrock-converse-stream` | Amazon Bedrock Converse API |
@@ -373,18 +373,19 @@ interface OAuthCredentials {
 
 ## Custom Streaming API
 
-For providers with non-standard APIs, implement `streamSimple`. Study the existing provider implementations before writing your own:
-
+For providers with non-standard APIs, implement `streamSimple`. Study the existing streaming implementations before writing your own:
 
 **Reference implementations:**
 
-Atomic uses provider implementations from its installed `@earendil-works/pi-ai` dependency. Inspect the compiled declarations and JavaScript under `node_modules/@earendil-works/pi-ai/dist/providers/`, including:
-- `anthropic.d.ts` / `anthropic.js` - Anthropic Messages API
-- `mistral.d.ts` / `mistral.js` - Mistral Conversations API
+Atomic uses provider implementations from its installed `@earendil-works/pi-ai` dependency. The streaming implementations behind the `api` field live under `node_modules/@earendil-works/pi-ai/dist/api/`, including:
+- `anthropic-messages.d.ts` / `anthropic-messages.js` - Anthropic Messages API
+- `mistral-conversations.d.ts` / `mistral-conversations.js` - Mistral Conversations/Chat streaming
 - `openai-completions.d.ts` / `openai-completions.js` - OpenAI Chat Completions
 - `openai-responses.d.ts` / `openai-responses.js` - OpenAI Responses API
-- `google.d.ts` / `google.js` - Google Generative AI
-- `amazon-bedrock.d.ts` / `amazon-bedrock.js` - AWS Bedrock
+- `google-generative-ai.d.ts` / `google-generative-ai.js` - Google Generative AI
+- `bedrock-converse-stream.d.ts` / `bedrock-converse-stream.js` - Amazon Bedrock Converse API
+Per-vendor provider configurations (base URLs, auth, model catalogs) live under `dist/providers/`, for example `anthropic.d.ts` / `anthropic.js` and `mistral.d.ts` / `mistral.js`.
+
 ### Stream Pattern
 
 All providers follow the same pattern:

package/docs/development.md

@@ -92,6 +92,5 @@ packages/
   subagents/    # Built-in subagent orchestration and reusable agents
   mcp/          # Built-in MCP adapter extension
   web-access/   # Built-in web search and content extraction tools
-  i-have-adhd/   # Built-in ADHD-friendly response style extension
   intercom/     # Built-in cross-session coordination channel
 ```

package/docs/docs.json

@@ -35,7 +35,6 @@
           "skills",
           "subagents",
           "intercom",
-          "i-have-adhd",
           "workflows",
           "prompt-templates",
           "themes",

package/docs/environment-variables.md

@@ -13,9 +13,12 @@ Atomic accepts environment variables for configuration, provider credentials, an
 | `ATOMIC_SKIP_VERSION_CHECK` | `PI_SKIP_VERSION_CHECK` | Skip automatic startup version checks; explicit self-update still checks |
 | `ATOMIC_TELEMETRY` | `PI_TELEMETRY` | Enable/disable install/update telemetry |
 | `ATOMIC_REDUCED_MOTION` | `PI_REDUCED_MOTION` | Use static reduced-motion presentation |
+| `ATOMIC_EXPERIMENTAL` | `PI_EXPERIMENTAL` | Set to `1` to enable experimental features: built-in tool definitions request strict JSON-schema constrained sampling (`prefer`), and the footer shows an `xp` badge |
 
 `PI_CACHE_RETENTION=long` is a provider/upstream prompt-cache option and intentionally has no Atomic-prefixed alias. `VISUAL` and `EDITOR` select the Ctrl+G external editor when `externalEditor` is unset.
 
+`PI_TUI_ESC_TIMEOUT` belongs to the installed pi-tui renderer and also keeps its upstream name: it sets how long the renderer waits after a lone `ESC` before treating it as the Escape key, in milliseconds. The default is `100` over SSH and `10` otherwise; increase it if Alt-key input is misread as Escape.
+
 ## Subprocess attribution
 
 `AI_AGENT=atomic` is set by the CLI, RPC, and compiled binary entry points and forced into every Atomic-owned child-process environment, including bash/tool commands, isolated RPC children, subagent and workflow runners, MCP servers, web-access subprocesses, and the intercom broker. This follows upstream's overwrite policy: a caller-supplied `AI_AGENT` is replaced in the Atomic process and child environment, but the caller's environment object is never mutated.

package/docs/extensions.md

@@ -13,6 +13,7 @@ Extensions are TypeScript modules that extend Atomic's behavior. They can subscr
 - **Custom UI components** - Full TUI components with keyboard input via `ctx.ui.custom()` for complex interactions
 - **Custom commands** - Register commands like `/mycommand` via `pi.registerCommand()`
 - **Session persistence** - Store state that survives restarts via `pi.appendEntry()`
+- **Reload-surviving state** - Keep in-memory objects alive across `/reload` via `sessionScopedExtensionState()`
 - **Custom rendering** - Control how tool calls/results and messages appear in TUI
 
 **Example use cases:**
@@ -48,6 +49,7 @@ See [examples/extensions/](https://github.com/bastani-inc/atomic/tree/main/packa
 - [ExtensionCommandContext](#extensioncommandcontext)
 - [ExtensionAPI Methods](#extensionapi-methods)
 - [State Management](#state-management)
+  - [Session-scoped in-memory state](#session-scoped-in-memory-state)
 - [Custom Tools](#custom-tools)
 - [Custom UI](#custom-ui)
 - [Error Handling](#error-handling)
@@ -1186,6 +1188,22 @@ pi.on("before_agent_start", (event, ctx) => {
 });
 ```
 
+### ctx.getSkillCatalog()
+
+Returns the current loader-owned skill catalog when the host provides one. Use it to resolve exact skill selectors, including source-qualified names such as `tdd@builtin`, without falling back to the bare precedence winner.
+
+```typescript
+pi.on("session_start", (_event, ctx) => {
+  const catalog = ctx.getSkillCatalog?.();
+  const resolved = catalog?.resolve("tdd@builtin");
+  if (resolved?.ok) {
+    ctx.ui.notify(`Using ${resolved.candidate.selector}`, "info");
+  }
+});
+```
+
+`pi.getCommands()` already includes the same advertised `/skill:name` and `/skill:name@source` names. See [Skill Commands](/skills#skill-commands).
+
 ## ExtensionCommandContext
 
 Command handlers receive `ExtensionCommandContext`, which extends `ExtensionContext` with session control methods. These are only available in commands because they can deadlock if called from event handlers.
@@ -1559,6 +1577,9 @@ pi.sendUserMessage([
 // During streaming - must specify delivery mode
 pi.sendUserMessage("Focus on error handling", { deliverAs: "steer" });
 pi.sendUserMessage("And then summarize", { deliverAs: "followUp" });
+
+// Opt in to extension command dispatch and skill/prompt template expansion
+pi.sendUserMessage("/review src/index.ts", { expandPromptTemplates: true });
 ```
 
 **Options:**
@@ -1566,6 +1587,8 @@ pi.sendUserMessage("And then summarize", { deliverAs: "followUp" });
   - `"steer"` - Queues the message for delivery after the current assistant turn finishes executing its tool calls
   - `"followUp"` - Waits for agent to finish all tools
 
+- `expandPromptTemplates` - Dispatch extension commands and expand skill commands and prompt templates instead of sending the text literally. Defaults to `false`, so an extension-authored message is sent as-is unless it opts in; an unknown command falls through to a literal send.
+
 When not streaming, the message is sent immediately and triggers a new turn. When streaming without `deliverAs`, throws an error.
 
 See [send-user-message.ts](https://github.com/bastani-inc/atomic/blob/main/packages/coding-agent/examples/extensions/send-user-message.ts) for a complete example.
@@ -1830,10 +1853,11 @@ pi.events.emit("my:event", { ... });
 unsubscribe();
 ```
 
-`pi.events` belongs to the extension instance that received it. Register listeners again when that instance reloads, and do not retain the object for later use: calling `on()` or `emit()` through a captured handle after reload or disposal throws.
+`pi.events` belongs to the extension instance that received it. Register listeners again when that instance reloads, and do not retain the object for later use: calling `on()` or `emit()` through a captured handle after reload or disposal throws. To keep in-memory state across `/reload`, pass this facade to [`sessionScopedExtensionState`](#session-scoped-in-memory-state); do not capture the facade itself.
 
 If you implement an `ExtensionRuntime` for an embedded host, provide `trackEventBusSubscription(unsubscribe)` and retain each returned subscription until that extension runtime is reloaded or disposed. `ExtensionUIContext.getChatRenderSettings()` must return `markdownTransformers`; it may also return `renderLatex` to control terminal math rendering. These fields keep event subscriptions and display transforms scoped to the active extension instance.
 
+
 ### Native providers
 
 In addition to `registerProvider(name, config)`, extensions can register a complete native `Provider` from `@earendil-works/pi-ai` with `pi.registerProvider(provider)`. Use the native overload for provider-owned authentication, catalog refresh, and transport behavior; use the config overload for ordinary proxies and custom endpoints.
@@ -1947,7 +1971,15 @@ pi.registerCommand("my-setup-teardown", {
 
 ## State Management
 
-Extensions with state should store it in tool result `details` for proper branching support:
+Choose the store that matches the lifetime you need:
+
+- **Tool result `details`** — reconstructs across `/branch` and `/resume` from the transcript.
+- **`pi.appendEntry()`** — durable custom entries that survive process restart. They do not enter model context.
+- **`sessionScopedExtensionState()`** — in-memory objects that survive `/reload` for the current process. They do not survive process restart.
+
+Module-scoped variables do **not** survive `/reload`: reloading file extensions re-evaluates their module graph, so those singletons are new empty objects while the session keeps running.
+
+Extensions with state that must follow conversation branches should store it in tool result `details`:
 
 ```typescript
 export default function (pi: ExtensionAPI) {
@@ -1979,6 +2011,43 @@ export default function (pi: ExtensionAPI) {
 }
 ```
 
+### Session-scoped in-memory state
+
+Import `sessionScopedExtensionState` from `@bastani/atomic` when an extension must keep a live object across `/reload` — registries, abort controllers, connection pools, or any other handle that cannot be rebuilt from the transcript.
+
+```typescript
+import { sessionScopedExtensionState, type ExtensionAPI } from "@bastani/atomic";
+
+interface CounterState {
+  count: number;
+}
+
+export default function (pi: ExtensionAPI) {
+  const state = sessionScopedExtensionState(pi.events, "my-extension:counter:v1", () => ({
+    count: 0,
+  }));
+
+  pi.registerCommand("bump", {
+    description: "Increment a counter that survives /reload",
+    handler: async (_args, ctx) => {
+      state.count += 1;
+      ctx.ui.notify(`count=${state.count}`, "info");
+    },
+  });
+}
+```
+
+**Required scope.** Pass the extension's `pi.events` facade (or the session `EventBus` itself). The host resolves that facade to the canonical session bus, so every load generation of one session re-binds to the same object. Two in-process sessions with distinct buses stay isolated. Do not pass an arbitrary object: an unregistered scope is treated as its own bus and will not re-bind after reload.
+
+**Session-wide key namespace.** Keys are not automatically namespaced by extension. Two extensions that pass the same key on the same session receive the first extension's object; the later factory is not called. Prefix every key with a stable extension identity.
+
+**Key-versioning.** Append a version suffix and bump it when the stored shape changes, for example `"my-extension:counter:v1"` → `"my-extension:counter:v2"`. The new key declines the incompatible predecessor instead of reusing it under a new type.
+
+**Reload behavior.** `/reload` builds a new `pi.events` facade that still forwards to the same bus. Calling `sessionScopedExtensionState` again with the same namespaced key returns the existing object and does not invoke `create`. Entries live exactly as long as that bus. They are not written to the session file; use `pi.appendEntry()` when the data must survive process restart.
+
+**Shutdown.** `session_shutdown` still runs for resources you opened. If the object holds sockets, watchers, or timers, close them there. The next `session_start` or first use can recreate them inside the same session-scoped object.
+
+
 ## Custom Tools
 
 Register tools the LLM can call via `pi.registerTool()`. Tools appear in the system prompt and can have custom rendering.
@@ -2713,6 +2782,8 @@ Custom component `handleInput` methods must return `true` when they consume an i
 
 Custom component `handleInput` methods must return `true` when they consume an input and `false` or `undefined` when they do not. In fullscreen mode, an unhandled viewport key continues to the transcript; remote components also fall through on a failed or timed-out reply. Return `true` for a handled key so it is not applied twice.
 
+A handler that returns a promise is judged when it settles: only a resolved `true` consumes the key, while `false`, `undefined`, and a rejection fall through to the viewport. A component with no `handleInput` declines everything, so viewport keys still scroll the transcript behind it.
+
 Pass `{ handlesCtrlC: true }` when the component binds Ctrl+C itself (cancel, skip, close). In isolated interactive sessions the host otherwise closes a component that owns input on the first Ctrl+C, so that a component which never resolves cannot trap the keyboard. See [Interactive callback isolation](#interactive-callback-isolation).
 
 See [TUI components](/tui) for the full component API.
@@ -2743,6 +2814,33 @@ const result = await ctx.ui.custom<string | null>(
 
 See [TUI components](/tui) for the full `OverlayOptions` API and [overlay-qa-tests.ts](https://github.com/bastani-inc/atomic/blob/main/packages/coding-agent/examples/extensions/overlay-qa-tests.ts) for examples.
 
+Pass `{ reserveTranscriptRows: true }` for a blocking bottom-anchored dialog. A reserving overlay must set `overlayOptions.anchor` to `bottom-left`, `bottom-center`, or `bottom-right`; `row` and a nonzero `offsetY` are rejected because they invalidate the transcript-intersection model. Horizontal placement options remain supported. An overlay is composited over the transcript rather than measured into the layout, so without this option a tall dialog can cover the whole screen and the transcript rows it covers can never be scrolled above it. With it, the host bounds the overlay so at least six transcript rows stay visible. Top and bottom margins limit the wrapper before pi-tui composition, preventing a second fixed-head crop. Numeric and percentage `maxHeight` values are also resolved before active-row windowing and removed from the options passed to pi-tui. The host computes each visible bottom overlay's real intersection with the transcript and reserves the connected covered suffix once, so scrolling to the end keeps the newest output readable. A measured height change on mount or resize requests one automatic settling repaint. Margins, overlapping overlays, resize, and temporary visibility changes are reflected each frame. A temporarily hidden overlay — through `OverlayHandle.setHidden(true)` or a false `OverlayOptions.visible` result — contributes no intersection until it becomes visible again. Permanent handle removal, closure, and raw host removal release that exact overlay's registration; the shared reserve remains until its final overlay leaves. Leave the option unset for an overlay that is meant to take the screen, such as a full-screen graph. The built-in `ask_user_question` dialog sets it.
+
+```typescript
+const result = await ctx.ui.custom<string | null>(
+  (tui, theme, keybindings, done) => new MyDialog({ onClose: done }),
+  {
+    overlay: true,
+    reserveTranscriptRows: true,
+    overlayOptions: { anchor: "bottom-center", width: "100%" },
+  }
+);
+```
+
+A component mounted with `reserveTranscriptRows` always releases configured fullscreen transcript actions and vertical wheel input to the host viewport, including while a nested input has focus. The component keeps all other keyboard and mouse input, including text editing, arrows, confirmation, cancellation, and clicks. This rule applies only to reserving overlays; other focused overlays still receive page and wheel input first and can keep it by returning `true`.
+
+Bounding a tall dialog means dropping rows, and the host would otherwise have to guess which. Embed `OVERLAY_ACTIVE_ROW_MARKER` in the line your component most needs kept — the selected row of a list — and the host places what it keeps around that row instead of taking a fixed head, even when the effective `maxHeight` is only one row. The mark is a zero-width APC sequence that `visibleWidth` measures as zero, and the host strips it before the line is painted, so it never reaches the terminal. Embed it once per frame; the host uses the first line that carries it. The `ask_user_question` dialog marks every active selectable row, including single- and multi-select options, Next, Submit, Cancel, and inline sentinel rows. Focused pi-tui inputs also anchor the bound through their cursor marker, so arrow keys and text input stay visible on a 16-row terminal.
+
+```typescript
+import { OVERLAY_ACTIVE_ROW_MARKER } from "@bastani/atomic";
+
+render(width: number): string[] {
+  return this.items.map((item, index) =>
+    index === this.selected ? `${this.row(item, width)}${OVERLAY_ACTIVE_ROW_MARKER}` : this.row(item, width),
+  );
+}
+```
+
 ### Custom Editor
 
 Replace the main input editor with a custom implementation (vim mode, emacs mode, etc.):

package/docs/json.md

@@ -55,6 +55,8 @@ type AgentEvent =
   | { type: "tool_execution_end"; toolCallId: string; toolName: string; result: any; isError: boolean };
 ```
 
+On the wire, Atomic narrows `message_update`: every record carries the streaming delta in `assistantMessageEvent` (with its cumulative `partial` field stripped), the latest cumulative provider-reported `usage`, and — only when the provider reported one — `endTurn`, the provider's explicit end-of-turn signal (pi-ai's `AssistantMessage.endTurn`, for example OpenAI Codex `end_turn`). The `usage` object may remain zero until completion when a provider only reports usage at the end. A non-assistant message on this event is a protocol violation and throws rather than emitting an invented zeroed usage.
+
 ## Message Types
 
 Base messages come from `@earendil-works/pi-ai` (installed as an Atomic dependency):
@@ -81,7 +83,7 @@ Followed by events as they occur:
 {"type":"agent_start"}
 {"type":"turn_start"}
 {"type":"message_start","message":{"role":"assistant","content":[],...}}
-{"type":"message_update","assistantMessageEvent":{"type":"text_delta","delta":"Hello",...}}
+{"type":"message_update","usage":{...},"assistantMessageEvent":{"type":"text_delta","delta":"Hello",...}}
 {"type":"message_end","message":{...}}
 {"type":"turn_end","message":{...},"toolResults":[]}
 {"type":"agent_end","messages":[...]}

package/docs/keybindings.md

@@ -84,10 +84,10 @@ The dedicated history actions always change history entries, regardless of the c
 
 ### TUI Fullscreen Viewport
 
-Interactive sessions always use this fullscreen viewport for the primary transcript scroll region. Mouse-wheel input scrolls the region under the pointer, falling back to the transcript over the fixed editor/status/footer dock. Clicking an OSC 8 hyperlink opens it in the default handler; the jump-to-bottom indicator's internal OSC 8 link returns the focused transcript surface to its live end, including an attached workflow stage chat. Dragging with the primary mouse button selects text and copies it to the clipboard.
+Interactive sessions always use this fullscreen viewport for the primary transcript scroll region. Mouse-wheel input scrolls the region under the pointer, falling back to the transcript over the fixed editor/status/footer dock. Clicking an OSC 8 hyperlink opens it in the default handler; the jump-to-bottom indicator's internal OSC 8 link returns the focused transcript surface to its live end, including an attached workflow stage chat. Dragging with the primary mouse button selects text and copies it to the clipboard. See [Terminal setup](/terminal-setup) for terminal-specific mouse and trackpad behavior.
 
 
-Fullscreen text selection comes from the installed pi-tui 0.84.1 renderer. Drag with the primary button to select characters; double-click selects a word and triple-click selects a line. Focus changes and non-drag clicks clear transient selection state, preventing a stale highlight from appearing. The renderer also reduces mouse tracking in tmux, Zellij, and GNU Screen.
+Fullscreen text selection comes from the installed pi-tui 0.84.2 renderer. Drag with the primary button to select characters; double-click selects a word and triple-click selects a line. Focus changes and non-drag clicks clear transient selection state, preventing a stale highlight from appearing. A drag release reported with the generic SGR button code also ends the selection. The renderer also reduces mouse tracking in tmux, Zellij, and GNU Screen.
 Fullscreen transcript bindings take precedence over editor bindings while the main editor has focus. The default unmodified navigation keys therefore control the transcript, while their `ctrl` variants continue to control the editor. When a fullscreen overlay or inline custom component has focus, Atomic sends matching viewport bindings to that component first. Returning `true` keeps the key local. For an in-process component, returning `false`, `undefined`, or `void` lets transcript scrolling handle it. A remote component's correlated reply falls through on `false`, failure, or timeout; `undefined` after disposal is dropped because that component no longer owns focus.
 
 | Key | Editor action | Fullscreen action |
@@ -97,8 +97,9 @@ Fullscreen transcript bindings take precedence over editor bindings while the ma
 | `pageUp`, `pageDown` | Editor | Transcript |
 | `ctrl+pageUp`, `ctrl+pageDown` | Editor | Editor |
 
-This routing remains configurable through the ordinary action bindings. For example, `"tui.altScreen.pageUp": "ctrl+pageUp"` makes `pageUp` control the editor and `ctrl+pageUp` control the transcript in fullscreen mode. Bind `tui.altScreen.halfPageUp` and `tui.altScreen.halfPageDown` for smaller transcript steps while keeping the full-page bindings. Setting `"tui.altScreen.pageUp": []` disables that transcript shortcut entirely. User bindings replace the defaults for that action.
+This routing remains configurable through the ordinary action bindings. For example, `"tui.altScreen.pageUp": "ctrl+pageUp"` makes `pageUp` control the editor and `ctrl+pageUp` control the transcript in fullscreen mode. Bind `tui.altScreen.halfPageUp` and `tui.altScreen.halfPageDown` for half-page steps, or `tui.altScreen.lineUp` and `tui.altScreen.lineDown` for single-line steps, while keeping the full-page bindings. Setting `"tui.altScreen.pageUp": []` disables that transcript shortcut entirely. User bindings replace the defaults for that action.
 When a fullscreen overlay or inline custom component owns focus, it receives matching `pageUp`, `pageDown`, `home`, `end`, and custom `tui.altScreen.*` bindings before transcript scrolling. Its handler returns `true` when it consumes the key; an unhandled result lets transcript scrolling proceed. Remote components receive a correlated reply and have a bounded fallback if the engine stalls. Mouse-wheel and click sequences follow the same focused-component route, so workflow graphs and stage chats can consume them before unhandled events fall through to the fullscreen viewport.
+The blocking `ask_user_question` dialog is pinned to the bottom of the screen as an overlay rather than measured into the layout, so opening it does not shrink the transcript viewport or the page step: `pageUp`, `pageDown`, `home`, `end`, and the wheel move by the same amount and reach every line of the scrollback, including the newest ones, in the strip that stays visible above the dialog. Those transcript actions still work while the Notes editor is open. Notes keeps ordinary text and edit actions, including the default `ctrl+home` and `ctrl+end`; a key moves the transcript instead only when configured for a `tui.altScreen.*` action. The dialog is bounded so the visible strip survives on a short terminal, and the active questionnaire row stays visible inside the bound as you move through single-select choices, multi-select choices, Next, Submit, Cancel, and inline inputs. It keeps its own arrow, `enter`, `tab`, `space`, `esc`, click, and selection input.
 
 | Keybinding id | Default | Description |
 |--------|---------|-------------|
@@ -106,11 +107,15 @@ When a fullscreen overlay or inline custom component owns focus, it receives mat
 | `tui.altScreen.pageDown` | `pageDown` | Scroll the transcript down by one page |
 | `tui.altScreen.halfPageUp` | *(none)* | Scroll the transcript up by half a page |
 | `tui.altScreen.halfPageDown` | *(none)* | Scroll the transcript down by half a page |
+| `tui.altScreen.lineUp` | *(none)* | Scroll the transcript up by one line |
+| `tui.altScreen.lineDown` | *(none)* | Scroll the transcript down by one line |
 | `tui.altScreen.previousPrompt` | `ctrl+shift+up` | Jump to the previous marked message |
 | `tui.altScreen.nextPrompt` | `ctrl+shift+down` | Jump to the next marked message |
 | `tui.altScreen.top` | `home` | Scroll to the beginning of the transcript |
 | `tui.altScreen.bottom` | `end` | Scroll to the transcript end and follow new output |
 
+Atomic does not ship a find-in-transcript shortcut. The four `tui.altScreen.search*` actions remain in the keybinding table so an existing `keybindings.json` still validates, but they have no default keys and do nothing.
+
 On Windows, pressing the secondary mouse button in fullscreen pastes text from the system clipboard into the focused component.
 
 ### Application

package/docs/models/artificial-analysis-index.md

@@ -8,7 +8,7 @@ description: "The external benchmarks that inform Atomic model selection — Art
 Atomic's model-selection docs are keyed to two live external benchmark sources rather than a hand-maintained table of scores. This page lists each benchmark, what it measures, and **when to reference it** for a given workflow role — so the docs stay useful as new models ship without a manual rewrite every time.
 
 <Warning>
-No single benchmark is the source of truth. Use these as inputs and validate against Atomic's own workflow evals — public suites test different task distributions than real engineering loops. When Atomic's numbers disagree with a public index, Atomic's evals win. **Last reviewed: 2026-07-17.**
+No single benchmark is the source of truth. Use these as inputs and validate against Atomic's own workflow evals — public suites test different task distributions than real engineering loops. When Atomic's numbers disagree with a public index, Atomic's evals win. **Last reviewed: 2026-08-16.**
 </Warning>
 
 ## The two sources at a glance
@@ -32,7 +32,7 @@ Artificial Analysis separates performance by benchmark, which lets a workflow pi
 
 ### Composite indices
 
-- **Intelligence Index (v4.1)** — composite of the nine evaluations below. Use as a first-pass filter when a new model appears.
+- **Intelligence Index (v4.1.1)** — composite of the nine evaluations below. Use as a first-pass filter when a new model appears.
 - **Coding Index** — coding-weighted sub-index. Cross-check against DeepSWE.
 - **Agentic Index** — tool use, planning, autonomy, complex problem solving. The best AA signal for orchestrator and reviewer roles.