@bastani/atomic 0.7.17 → 0.8.0

package/dist/builtin/subagents/src/agents/agents.ts

@@ -0,0 +1,809 @@
+/**
+ * Agent discovery and configuration
+ */
+
+import * as fs from "node:fs";
+import * as os from "node:os";
+import * as path from "node:path";
+import { fileURLToPath } from "node:url";
+import { CONFIG_DIR_NAME } from "@bastani/atomic";
+import type { OutputMode } from "../shared/types.ts";
+import { KNOWN_FIELDS } from "./agent-serializer.ts";
+import { parseChain } from "./chain-serializer.ts";
+import { mergeAgentsForScope } from "./agent-selection.ts";
+import { parseFrontmatter } from "./frontmatter.ts";
+import { buildRuntimeName, parsePackageName } from "./identity.ts";
+export { buildRuntimeName, frontmatterNameForConfig, parsePackageName } from "./identity.ts";
+
+export type AgentScope = "user" | "project" | "both";
+
+export type AgentSource = "builtin" | "user" | "project";
+type SystemPromptMode = "append" | "replace";
+export type AgentDefaultContext = "fresh" | "fork";
+
+export function defaultSystemPromptMode(name: string): SystemPromptMode {
+	return name === "delegate" ? "append" : "replace";
+}
+
+export function defaultInheritProjectContext(name: string): boolean {
+	return name === "delegate";
+}
+
+export function defaultInheritSkills(): boolean {
+	return false;
+}
+
+export interface BuiltinAgentOverrideBase {
+	model?: string;
+	fallbackModels?: string[];
+	thinking?: string;
+	systemPromptMode: SystemPromptMode;
+	inheritProjectContext: boolean;
+	inheritSkills: boolean;
+	defaultContext?: AgentDefaultContext;
+	disabled?: boolean;
+	systemPrompt: string;
+	skills?: string[];
+	tools?: string[];
+	mcpDirectTools?: string[];
+}
+
+interface BuiltinAgentOverrideConfig {
+	model?: string | false;
+	fallbackModels?: string[] | false;
+	thinking?: string | false;
+	systemPromptMode?: SystemPromptMode;
+	inheritProjectContext?: boolean;
+	inheritSkills?: boolean;
+	defaultContext?: AgentDefaultContext | false;
+	disabled?: boolean;
+	systemPrompt?: string;
+	skills?: string[] | false;
+	tools?: string[] | false;
+}
+
+interface BuiltinAgentOverrideInfo {
+	scope: "user" | "project";
+	path: string;
+	base: BuiltinAgentOverrideBase;
+}
+
+export interface AgentConfig {
+	name: string;
+	localName?: string;
+	packageName?: string;
+	description: string;
+	tools?: string[];
+	mcpDirectTools?: string[];
+	model?: string;
+	fallbackModels?: string[];
+	thinking?: string;
+	systemPromptMode: SystemPromptMode;
+	inheritProjectContext: boolean;
+	inheritSkills: boolean;
+	defaultContext?: AgentDefaultContext;
+	systemPrompt: string;
+	source: AgentSource;
+	filePath: string;
+	skills?: string[];
+	extensions?: string[];
+	output?: string;
+	defaultReads?: string[];
+	defaultProgress?: boolean;
+	interactive?: boolean;
+	maxSubagentDepth?: number;
+	disabled?: boolean;
+	extraFields?: Record<string, string>;
+	override?: BuiltinAgentOverrideInfo;
+}
+
+interface SubagentSettings {
+	overrides: Record<string, BuiltinAgentOverrideConfig>;
+	disableBuiltins?: boolean;
+}
+
+const EMPTY_SUBAGENT_SETTINGS: SubagentSettings = { overrides: {} };
+
+export interface ChainStepConfig {
+	agent: string;
+	task: string;
+	output?: string | false;
+	outputMode?: OutputMode;
+	reads?: string[] | false;
+	model?: string;
+	skills?: string[] | false;
+	progress?: boolean;
+}
+
+export interface ChainConfig {
+	name: string;
+	localName?: string;
+	packageName?: string;
+	description: string;
+	source: AgentSource;
+	filePath: string;
+	steps: ChainStepConfig[];
+	extraFields?: Record<string, string>;
+}
+
+interface AgentDiscoveryResult {
+	agents: AgentConfig[];
+	projectAgentsDir: string | null;
+}
+
+function getUserChainDir(): string {
+	return path.join(os.homedir(), CONFIG_DIR_NAME, "agent", "chains");
+}
+
+function splitToolList(rawTools: string[] | undefined): { tools?: string[]; mcpDirectTools?: string[] } {
+	const mcpDirectTools: string[] = [];
+	const tools: string[] = [];
+	for (const tool of rawTools ?? []) {
+		if (tool.startsWith("mcp:")) {
+			mcpDirectTools.push(tool.slice(4));
+		} else {
+			tools.push(tool);
+		}
+	}
+	return {
+		...(tools.length > 0 ? { tools } : {}),
+		...(mcpDirectTools.length > 0 ? { mcpDirectTools } : {}),
+	};
+}
+
+function joinToolList(config: Pick<AgentConfig, "tools" | "mcpDirectTools">): string[] | undefined {
+	const joined = [
+		...(config.tools ?? []),
+		...(config.mcpDirectTools ?? []).map((tool) => `mcp:${tool}`),
+	];
+	return joined.length > 0 ? joined : undefined;
+}
+
+function arraysEqual(a: string[] | undefined, b: string[] | undefined): boolean {
+	if (!a && !b) return true;
+	if (!a || !b) return false;
+	if (a.length !== b.length) return false;
+	for (let i = 0; i < a.length; i++) {
+		if (a[i] !== b[i]) return false;
+	}
+	return true;
+}
+
+function cloneOverrideBase(agent: AgentConfig): BuiltinAgentOverrideBase {
+	return {
+		model: agent.model,
+		fallbackModels: agent.fallbackModels ? [...agent.fallbackModels] : undefined,
+		thinking: agent.thinking,
+		systemPromptMode: agent.systemPromptMode,
+		inheritProjectContext: agent.inheritProjectContext,
+		inheritSkills: agent.inheritSkills,
+		defaultContext: agent.defaultContext,
+		disabled: agent.disabled,
+		systemPrompt: agent.systemPrompt,
+		skills: agent.skills ? [...agent.skills] : undefined,
+		tools: agent.tools ? [...agent.tools] : undefined,
+		mcpDirectTools: agent.mcpDirectTools ? [...agent.mcpDirectTools] : undefined,
+	};
+}
+
+function cloneOverrideValue(override: BuiltinAgentOverrideConfig): BuiltinAgentOverrideConfig {
+	return {
+		...(override.model !== undefined ? { model: override.model } : {}),
+		...(override.fallbackModels !== undefined
+			? { fallbackModels: override.fallbackModels === false ? false : [...override.fallbackModels] }
+			: {}),
+		...(override.thinking !== undefined ? { thinking: override.thinking } : {}),
+		...(override.systemPromptMode !== undefined ? { systemPromptMode: override.systemPromptMode } : {}),
+		...(override.inheritProjectContext !== undefined ? { inheritProjectContext: override.inheritProjectContext } : {}),
+		...(override.inheritSkills !== undefined ? { inheritSkills: override.inheritSkills } : {}),
+		...(override.defaultContext !== undefined ? { defaultContext: override.defaultContext } : {}),
+		...(override.disabled !== undefined ? { disabled: override.disabled } : {}),
+		...(override.systemPrompt !== undefined ? { systemPrompt: override.systemPrompt } : {}),
+		...(override.skills !== undefined ? { skills: override.skills === false ? false : [...override.skills] } : {}),
+		...(override.tools !== undefined ? { tools: override.tools === false ? false : [...override.tools] } : {}),
+	};
+}
+
+function findNearestProjectRoot(cwd: string): string | null {
+	let currentDir = cwd;
+	while (true) {
+		if (isDirectory(path.join(currentDir, CONFIG_DIR_NAME)) || isDirectory(path.join(currentDir, ".agents"))) {
+			return currentDir;
+		}
+
+		const parentDir = path.dirname(currentDir);
+		if (parentDir === currentDir) return null;
+		currentDir = parentDir;
+	}
+}
+
+function getUserAgentSettingsPath(): string {
+	return path.join(os.homedir(), CONFIG_DIR_NAME, "agent", "settings.json");
+}
+
+function getProjectAgentSettingsPath(cwd: string): string | null {
+	const projectRoot = findNearestProjectRoot(cwd);
+	return projectRoot ? path.join(projectRoot, CONFIG_DIR_NAME, "settings.json") : null;
+}
+
+function readSettingsFileStrict(filePath: string): Record<string, unknown> {
+	if (!fs.existsSync(filePath)) return {};
+	let raw: string;
+	try {
+		raw = fs.readFileSync(filePath, "utf-8");
+	} catch (error) {
+		const message = error instanceof Error ? error.message : String(error);
+		throw new Error(`Failed to read settings file '${filePath}': ${message}`, { cause: error });
+	}
+
+	let parsed: unknown;
+	try {
+		parsed = JSON.parse(raw);
+	} catch (error) {
+		const message = error instanceof Error ? error.message : String(error);
+		throw new Error(`Failed to parse settings file '${filePath}': ${message}`, { cause: error });
+	}
+	if (!parsed || typeof parsed !== "object" || Array.isArray(parsed)) {
+		throw new Error(`Settings file '${filePath}' must contain a JSON object.`);
+	}
+	return parsed as Record<string, unknown>;
+}
+
+function writeSettingsFile(filePath: string, settings: Record<string, unknown>): void {
+	fs.mkdirSync(path.dirname(filePath), { recursive: true });
+	fs.writeFileSync(filePath, JSON.stringify(settings, null, 2) + "\n", "utf-8");
+}
+
+function parseOverrideStringArrayOrFalse(
+	value: unknown,
+	meta: { filePath: string; name: string; field: string },
+): string[] | false | undefined {
+	if (value === undefined) return undefined;
+	if (value === false) return false;
+	if (!Array.isArray(value)) {
+		throw new Error(`Builtin override '${meta.name}' in '${meta.filePath}' has invalid '${meta.field}'; expected an array of strings or false.`);
+	}
+
+	const items: string[] = [];
+	for (const item of value) {
+		if (typeof item !== "string") {
+			throw new Error(`Builtin override '${meta.name}' in '${meta.filePath}' has invalid '${meta.field}'; expected an array of strings or false.`);
+		}
+		const trimmed = item.trim();
+		if (trimmed) items.push(trimmed);
+	}
+	return items;
+}
+
+function parseBuiltinOverrideEntry(
+	name: string,
+	value: unknown,
+	filePath: string,
+): BuiltinAgentOverrideConfig | undefined {
+	if (!value || typeof value !== "object" || Array.isArray(value)) {
+		throw new Error(`Builtin override '${name}' in '${filePath}' must be an object.`);
+	}
+
+	const input = value as Record<string, unknown>;
+	const override: BuiltinAgentOverrideConfig = {};
+
+	if ("model" in input) {
+		if (typeof input.model === "string" || input.model === false) override.model = input.model;
+		else throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'model'; expected a string or false.`);
+	}
+
+	if ("thinking" in input) {
+		if (typeof input.thinking === "string" || input.thinking === false) override.thinking = input.thinking;
+		else throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'thinking'; expected a string or false.`);
+	}
+
+	if ("systemPromptMode" in input) {
+		if (input.systemPromptMode === "append" || input.systemPromptMode === "replace") {
+			override.systemPromptMode = input.systemPromptMode;
+		} else {
+			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'systemPromptMode'; expected 'append' or 'replace'.`);
+		}
+	}
+
+	if ("inheritProjectContext" in input) {
+		if (typeof input.inheritProjectContext === "boolean") {
+			override.inheritProjectContext = input.inheritProjectContext;
+		} else {
+			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'inheritProjectContext'; expected a boolean.`);
+		}
+	}
+
+	if ("inheritSkills" in input) {
+		if (typeof input.inheritSkills === "boolean") {
+			override.inheritSkills = input.inheritSkills;
+		} else {
+			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'inheritSkills'; expected a boolean.`);
+		}
+	}
+
+	if ("defaultContext" in input) {
+		if (input.defaultContext === "fresh" || input.defaultContext === "fork" || input.defaultContext === false) {
+			override.defaultContext = input.defaultContext;
+		} else {
+			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'defaultContext'; expected 'fresh', 'fork', or false.`);
+		}
+	}
+
+	if ("disabled" in input) {
+		if (typeof input.disabled === "boolean") {
+			override.disabled = input.disabled;
+		} else {
+			throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'disabled'; expected a boolean.`);
+		}
+	}
+
+	if ("systemPrompt" in input) {
+		if (typeof input.systemPrompt === "string") override.systemPrompt = input.systemPrompt;
+		else throw new Error(`Builtin override '${name}' in '${filePath}' has invalid 'systemPrompt'; expected a string.`);
+	}
+
+	const fallbackModels = parseOverrideStringArrayOrFalse(input.fallbackModels, { filePath, name, field: "fallbackModels" });
+	if (fallbackModels !== undefined) override.fallbackModels = fallbackModels;
+
+	const skills = parseOverrideStringArrayOrFalse(input.skills, { filePath, name, field: "skills" });
+	if (skills !== undefined) override.skills = skills;
+
+	const tools = parseOverrideStringArrayOrFalse(input.tools, { filePath, name, field: "tools" });
+	if (tools !== undefined) override.tools = tools;
+
+	return Object.keys(override).length > 0 ? override : undefined;
+}
+
+function readSubagentSettings(filePath: string | null): SubagentSettings {
+	if (!filePath) return EMPTY_SUBAGENT_SETTINGS;
+	const settings = readSettingsFileStrict(filePath);
+	const subagents = settings.subagents;
+	if (!subagents || typeof subagents !== "object" || Array.isArray(subagents)) return EMPTY_SUBAGENT_SETTINGS;
+
+	const subagentsObject = subagents as Record<string, unknown>;
+	let disableBuiltins: boolean | undefined;
+	if ("disableBuiltins" in subagentsObject) {
+		if (typeof subagentsObject.disableBuiltins === "boolean") {
+			disableBuiltins = subagentsObject.disableBuiltins;
+		} else {
+			throw new Error(`Subagent settings in '${filePath}' have invalid 'disableBuiltins'; expected a boolean.`);
+		}
+	}
+
+	const parsed: Record<string, BuiltinAgentOverrideConfig> = {};
+	const agentOverrides = subagentsObject.agentOverrides;
+	if (!agentOverrides || typeof agentOverrides !== "object" || Array.isArray(agentOverrides)) {
+		return { overrides: parsed, disableBuiltins };
+	}
+	for (const [name, value] of Object.entries(agentOverrides)) {
+		const override = parseBuiltinOverrideEntry(name, value, filePath);
+		if (override) parsed[name] = override;
+	}
+	return { overrides: parsed, disableBuiltins };
+}
+
+function applyBuiltinOverride(
+	agent: AgentConfig,
+	override: BuiltinAgentOverrideConfig,
+	meta: { scope: "user" | "project"; path: string },
+): AgentConfig {
+	const next: AgentConfig = {
+		...agent,
+		override: { ...meta, base: cloneOverrideBase(agent) },
+	};
+
+	if (override.model !== undefined) next.model = override.model === false ? undefined : override.model;
+	if (override.fallbackModels !== undefined) {
+		next.fallbackModels = override.fallbackModels === false ? undefined : [...override.fallbackModels];
+	}
+	if (override.thinking !== undefined) next.thinking = override.thinking === false ? undefined : override.thinking;
+	if (override.systemPromptMode !== undefined) next.systemPromptMode = override.systemPromptMode;
+	if (override.inheritProjectContext !== undefined) next.inheritProjectContext = override.inheritProjectContext;
+	if (override.inheritSkills !== undefined) next.inheritSkills = override.inheritSkills;
+	if (override.defaultContext !== undefined) next.defaultContext = override.defaultContext === false ? undefined : override.defaultContext;
+	if (override.disabled !== undefined) next.disabled = override.disabled;
+	if (override.systemPrompt !== undefined) next.systemPrompt = override.systemPrompt;
+	if (override.skills !== undefined) next.skills = override.skills === false ? undefined : [...override.skills];
+	if (override.tools !== undefined) {
+		const { tools, mcpDirectTools } = splitToolList(override.tools === false ? [] : override.tools);
+		next.tools = tools;
+		next.mcpDirectTools = mcpDirectTools;
+	}
+
+	return next;
+}
+
+function applyBuiltinOverrides(
+	builtinAgents: AgentConfig[],
+	userSettings: SubagentSettings,
+	projectSettings: SubagentSettings,
+	userSettingsPath: string,
+	projectSettingsPath: string | null,
+): AgentConfig[] {
+	const projectBulkDisabled = projectSettings.disableBuiltins === true && projectSettingsPath !== null;
+	const userBulkDisabled = projectSettings.disableBuiltins === undefined && userSettings.disableBuiltins === true;
+
+	return builtinAgents.map((agent) => {
+		const projectOverride = projectSettings.overrides[agent.name];
+		if (projectOverride && projectSettingsPath) {
+			return applyBuiltinOverride(agent, projectOverride, { scope: "project", path: projectSettingsPath });
+		}
+
+		if (projectBulkDisabled && projectSettingsPath) {
+			return applyBuiltinOverride(agent, { disabled: true }, { scope: "project", path: projectSettingsPath });
+		}
+
+		const userOverride = userSettings.overrides[agent.name];
+		if (userOverride) {
+			return applyBuiltinOverride(agent, userOverride, { scope: "user", path: userSettingsPath });
+		}
+
+		if (userBulkDisabled) {
+			return applyBuiltinOverride(agent, { disabled: true }, { scope: "user", path: userSettingsPath });
+		}
+
+		return agent;
+	});
+}
+
+export function buildBuiltinOverrideConfig(
+	base: BuiltinAgentOverrideBase,
+	draft: Pick<AgentConfig, "model" | "fallbackModels" | "thinking" | "systemPromptMode" | "inheritProjectContext" | "inheritSkills" | "defaultContext" | "disabled" | "systemPrompt" | "skills" | "tools" | "mcpDirectTools">,
+): BuiltinAgentOverrideConfig | undefined {
+	const override: BuiltinAgentOverrideConfig = {};
+
+	if (draft.model !== base.model) override.model = draft.model ?? false;
+	if (!arraysEqual(draft.fallbackModels, base.fallbackModels)) override.fallbackModels = draft.fallbackModels ? [...draft.fallbackModels] : false;
+	if (draft.thinking !== base.thinking) override.thinking = draft.thinking ?? false;
+	if (draft.systemPromptMode !== base.systemPromptMode) override.systemPromptMode = draft.systemPromptMode;
+	if (draft.inheritProjectContext !== base.inheritProjectContext) override.inheritProjectContext = draft.inheritProjectContext;
+	if (draft.inheritSkills !== base.inheritSkills) override.inheritSkills = draft.inheritSkills;
+	if (draft.defaultContext !== base.defaultContext) override.defaultContext = draft.defaultContext ?? false;
+	if (draft.disabled !== base.disabled) override.disabled = draft.disabled ?? false;
+	if (draft.systemPrompt !== base.systemPrompt) override.systemPrompt = draft.systemPrompt;
+	if (!arraysEqual(draft.skills, base.skills)) override.skills = draft.skills ? [...draft.skills] : false;
+
+	const baseTools = joinToolList(base);
+	const draftTools = joinToolList(draft);
+	if (!arraysEqual(draftTools, baseTools)) override.tools = draftTools ? [...draftTools] : false;
+
+	return Object.keys(override).length > 0 ? override : undefined;
+}
+
+export function saveBuiltinAgentOverride(
+	cwd: string,
+	name: string,
+	scope: "user" | "project",
+	override: BuiltinAgentOverrideConfig,
+): string {
+	const filePath = scope === "project" ? getProjectAgentSettingsPath(cwd) : getUserAgentSettingsPath();
+	if (!filePath) throw new Error("Project override is not available here. No project config root was found.");
+
+	const settings = readSettingsFileStrict(filePath);
+	const subagents = settings.subagents && typeof settings.subagents === "object" && !Array.isArray(settings.subagents)
+		? { ...(settings.subagents as Record<string, unknown>) }
+		: {};
+	const agentOverrides = subagents.agentOverrides && typeof subagents.agentOverrides === "object" && !Array.isArray(subagents.agentOverrides)
+		? { ...(subagents.agentOverrides as Record<string, unknown>) }
+		: {};
+
+	agentOverrides[name] = cloneOverrideValue(override);
+	subagents.agentOverrides = agentOverrides;
+	settings.subagents = subagents;
+	writeSettingsFile(filePath, settings);
+	return filePath;
+}
+
+export function removeBuiltinAgentOverride(cwd: string, name: string, scope: "user" | "project"): string {
+	const filePath = scope === "project" ? getProjectAgentSettingsPath(cwd) : getUserAgentSettingsPath();
+	if (!filePath) throw new Error("Project override is not available here. No project config root was found.");
+	if (!fs.existsSync(filePath)) return filePath;
+
+	const settings = readSettingsFileStrict(filePath);
+	const subagents = settings.subagents;
+	if (!subagents || typeof subagents !== "object" || Array.isArray(subagents)) return filePath;
+	const nextSubagents = { ...(subagents as Record<string, unknown>) };
+	const agentOverrides = nextSubagents.agentOverrides;
+	if (!agentOverrides || typeof agentOverrides !== "object" || Array.isArray(agentOverrides)) return filePath;
+
+	const nextOverrides = { ...(agentOverrides as Record<string, unknown>) };
+	delete nextOverrides[name];
+	if (Object.keys(nextOverrides).length > 0) nextSubagents.agentOverrides = nextOverrides;
+	else delete nextSubagents.agentOverrides;
+
+	if (Object.keys(nextSubagents).length > 0) settings.subagents = nextSubagents;
+	else delete settings.subagents;
+
+	writeSettingsFile(filePath, settings);
+	return filePath;
+}
+
+function listMarkdownFilesRecursive(dir: string, predicate: (fileName: string) => boolean): string[] {
+	const files: string[] = [];
+	if (!fs.existsSync(dir)) return files;
+
+	let entries: fs.Dirent[];
+	try {
+		entries = fs.readdirSync(dir, { withFileTypes: true }).sort((a, b) => a.name.localeCompare(b.name));
+	} catch {
+		return files;
+	}
+
+	for (const entry of entries) {
+		const filePath = path.join(dir, entry.name);
+		if (entry.isDirectory()) {
+			files.push(...listMarkdownFilesRecursive(filePath, predicate));
+			continue;
+		}
+		if (!entry.isFile() && !entry.isSymbolicLink()) continue;
+		if (!predicate(entry.name)) continue;
+		files.push(filePath);
+	}
+	return files;
+}
+
+function loadAgentsFromDir(dir: string, source: AgentSource): AgentConfig[] {
+	const agents: AgentConfig[] = [];
+
+	for (const filePath of listMarkdownFilesRecursive(dir, (fileName) => fileName.endsWith(".md") && !fileName.endsWith(".chain.md"))) {
+		let content: string;
+		try {
+			content = fs.readFileSync(filePath, "utf-8");
+		} catch {
+			continue;
+		}
+
+		const { frontmatter, body } = parseFrontmatter(content);
+
+		if (!frontmatter.name || !frontmatter.description) {
+			continue;
+		}
+
+		const localName = frontmatter.name;
+		const parsedPackage = parsePackageName(frontmatter.package, `Agent '${localName}' package`);
+		if (parsedPackage.error) continue;
+		const packageName = parsedPackage.packageName;
+		const runtimeName = buildRuntimeName(localName, packageName);
+
+		const rawTools = frontmatter.tools
+			?.split(",")
+			.map((t) => t.trim())
+			.filter(Boolean);
+
+		const mcpDirectTools: string[] = [];
+		const tools: string[] = [];
+		if (rawTools) {
+			for (const tool of rawTools) {
+				if (tool.startsWith("mcp:")) {
+					mcpDirectTools.push(tool.slice(4));
+				} else {
+					tools.push(tool);
+				}
+			}
+		}
+
+		const defaultReads = frontmatter.defaultReads
+			?.split(",")
+			.map((f) => f.trim())
+			.filter(Boolean);
+
+		const skillStr = frontmatter.skill || frontmatter.skills;
+		const skills = skillStr
+			?.split(",")
+			.map((s) => s.trim())
+			.filter(Boolean);
+		const fallbackModels = frontmatter.fallbackModels
+			?.split(",")
+			.map((model) => model.trim())
+			.filter(Boolean);
+		const systemPromptMode = frontmatter.systemPromptMode === "replace"
+			? "replace"
+			: frontmatter.systemPromptMode === "append"
+				? "append"
+				: defaultSystemPromptMode(localName);
+		const inheritProjectContext = frontmatter.inheritProjectContext === "true"
+			? true
+			: frontmatter.inheritProjectContext === "false"
+				? false
+				: defaultInheritProjectContext(localName);
+		const inheritSkills = frontmatter.inheritSkills === "true"
+			? true
+			: frontmatter.inheritSkills === "false"
+				? false
+				: defaultInheritSkills();
+		const defaultContext = frontmatter.defaultContext === "fork"
+			? "fork" as const
+			: frontmatter.defaultContext === "fresh"
+				? "fresh" as const
+				: undefined;
+
+		let extensions: string[] | undefined;
+		if (frontmatter.extensions !== undefined) {
+			extensions = frontmatter.extensions
+				.split(",")
+				.map((e) => e.trim())
+				.filter(Boolean);
+		}
+
+		const extraFields: Record<string, string> = {};
+		for (const [key, value] of Object.entries(frontmatter)) {
+			if (!KNOWN_FIELDS.has(key)) extraFields[key] = value;
+		}
+
+		const parsedMaxSubagentDepth = Number(frontmatter.maxSubagentDepth);
+
+		agents.push({
+			name: runtimeName,
+			localName,
+			packageName,
+			description: frontmatter.description,
+			tools: tools.length > 0 ? tools : undefined,
+			mcpDirectTools: mcpDirectTools.length > 0 ? mcpDirectTools : undefined,
+			model: frontmatter.model,
+			fallbackModels: fallbackModels && fallbackModels.length > 0 ? fallbackModels : undefined,
+			thinking: frontmatter.thinking,
+			systemPromptMode,
+			inheritProjectContext,
+			inheritSkills,
+			defaultContext,
+			systemPrompt: body,
+			source,
+			filePath,
+			skills: skills && skills.length > 0 ? skills : undefined,
+			extensions,
+			output: frontmatter.output,
+			defaultReads: defaultReads && defaultReads.length > 0 ? defaultReads : undefined,
+			defaultProgress: frontmatter.defaultProgress === "true",
+			interactive: frontmatter.interactive === "true",
+			maxSubagentDepth:
+				Number.isInteger(parsedMaxSubagentDepth) && parsedMaxSubagentDepth >= 0
+					? parsedMaxSubagentDepth
+					: undefined,
+			extraFields: Object.keys(extraFields).length > 0 ? extraFields : undefined,
+		});
+	}
+
+	return agents;
+}
+
+function loadChainsFromDir(dir: string, source: AgentSource): ChainConfig[] {
+	const chains: ChainConfig[] = [];
+
+	for (const filePath of listMarkdownFilesRecursive(dir, (fileName) => fileName.endsWith(".chain.md"))) {
+		let content: string;
+		try {
+			content = fs.readFileSync(filePath, "utf-8");
+		} catch {
+			continue;
+		}
+
+		try {
+			chains.push(parseChain(content, source, filePath));
+		} catch {
+			continue;
+		}
+	}
+
+	return chains;
+}
+
+function isDirectory(p: string): boolean {
+	try {
+		return fs.statSync(p).isDirectory();
+	} catch {
+		return false;
+	}
+}
+
+function resolveNearestProjectAgentDirs(cwd: string): { readDirs: string[]; preferredDir: string | null } {
+	const projectRoot = findNearestProjectRoot(cwd);
+	if (!projectRoot) return { readDirs: [], preferredDir: null };
+
+	const legacyDir = path.join(projectRoot, ".agents");
+	const preferredDir = path.join(projectRoot, CONFIG_DIR_NAME, "agents");
+	const readDirs: string[] = [];
+	if (isDirectory(legacyDir)) readDirs.push(legacyDir);
+	if (isDirectory(preferredDir)) readDirs.push(preferredDir);
+
+	return {
+		readDirs,
+		preferredDir,
+	};
+}
+
+function resolveNearestProjectChainDirs(cwd: string): { readDirs: string[]; preferredDir: string | null } {
+	const projectRoot = findNearestProjectRoot(cwd);
+	if (!projectRoot) return { readDirs: [], preferredDir: null };
+
+	const preferredDir = path.join(projectRoot, CONFIG_DIR_NAME, "chains");
+	return {
+		readDirs: isDirectory(preferredDir) ? [preferredDir] : [],
+		preferredDir,
+	};
+}
+const BUILTIN_AGENTS_DIR = path.resolve(path.dirname(fileURLToPath(import.meta.url)), "..", "..", "agents");
+
+export function discoverAgents(cwd: string, scope: AgentScope): AgentDiscoveryResult {
+	const userDirOld = path.join(os.homedir(), CONFIG_DIR_NAME, "agent", "agents");
+	const userDirNew = path.join(os.homedir(), ".agents");
+	const { readDirs: projectAgentDirs, preferredDir: projectAgentsDir } = resolveNearestProjectAgentDirs(cwd);
+	const userSettingsPath = getUserAgentSettingsPath();
+	const projectSettingsPath = getProjectAgentSettingsPath(cwd);
+	const userSettings = scope === "project" ? EMPTY_SUBAGENT_SETTINGS : readSubagentSettings(userSettingsPath);
+	const projectSettings = scope === "user" ? EMPTY_SUBAGENT_SETTINGS : readSubagentSettings(projectSettingsPath);
+
+	const builtinAgents = applyBuiltinOverrides(
+		loadAgentsFromDir(BUILTIN_AGENTS_DIR, "builtin"),
+		userSettings,
+		projectSettings,
+		userSettingsPath,
+		projectSettingsPath,
+	);
+
+	const userAgentsOld = scope === "project" ? [] : loadAgentsFromDir(userDirOld, "user");
+	const userAgentsNew = scope === "project" ? [] : loadAgentsFromDir(userDirNew, "user");
+	const userAgents = [...userAgentsOld, ...userAgentsNew];
+
+	const projectAgents = scope === "user" ? [] : projectAgentDirs.flatMap((dir) => loadAgentsFromDir(dir, "project"));
+	const agents = mergeAgentsForScope(scope, userAgents, projectAgents, builtinAgents)
+		.filter((agent) => agent.disabled !== true);
+
+	return { agents, projectAgentsDir };
+}
+
+export function discoverAgentsAll(cwd: string): {
+	builtin: AgentConfig[];
+	user: AgentConfig[];
+	project: AgentConfig[];
+	chains: ChainConfig[];
+	userDir: string;
+	projectDir: string | null;
+	userChainDir: string;
+	projectChainDir: string | null;
+	userSettingsPath: string;
+	projectSettingsPath: string | null;
+} {
+	const userDirOld = path.join(os.homedir(), CONFIG_DIR_NAME, "agent", "agents");
+	const userDirNew = path.join(os.homedir(), ".agents");
+	const userChainDir = getUserChainDir();
+	const { readDirs: projectDirs, preferredDir: projectDir } = resolveNearestProjectAgentDirs(cwd);
+	const { readDirs: projectChainDirs, preferredDir: projectChainDir } = resolveNearestProjectChainDirs(cwd);
+	const userSettingsPath = getUserAgentSettingsPath();
+	const projectSettingsPath = getProjectAgentSettingsPath(cwd);
+	const userSettings = readSubagentSettings(userSettingsPath);
+	const projectSettings = readSubagentSettings(projectSettingsPath);
+
+	const builtin = applyBuiltinOverrides(
+		loadAgentsFromDir(BUILTIN_AGENTS_DIR, "builtin"),
+		userSettings,
+		projectSettings,
+		userSettingsPath,
+		projectSettingsPath,
+	);
+	const user = [
+		...loadAgentsFromDir(userDirOld, "user"),
+		...loadAgentsFromDir(userDirNew, "user"),
+	];
+	const projectMap = new Map<string, AgentConfig>();
+	for (const dir of projectDirs) {
+		for (const agent of loadAgentsFromDir(dir, "project")) {
+			projectMap.set(agent.name, agent);
+		}
+	}
+	const project = Array.from(projectMap.values());
+
+	const chainMap = new Map<string, ChainConfig>();
+	for (const dir of projectChainDirs) {
+		for (const chain of loadChainsFromDir(dir, "project")) {
+			chainMap.set(chain.name, chain);
+		}
+	}
+	const chains = [
+		...loadChainsFromDir(userChainDir, "user"),
+		...Array.from(chainMap.values()),
+	];
+
+	const userDir = fs.existsSync(userDirNew) ? userDirNew : userDirOld;
+
+	return { builtin, user, project, chains, userDir, projectDir, userChainDir, projectChainDir, userSettingsPath, projectSettingsPath };
+}