@aws-sdk/client-omics 3.787.0 → 3.796.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +41 -2
- package/dist-cjs/index.js +413 -12
- package/dist-es/Omics.js +10 -0
- package/dist-es/commands/CreateWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/DeleteWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/GetWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/ListWorkflowVersionsCommand.js +22 -0
- package/dist-es/commands/UpdateWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/index.js +5 -0
- package/dist-es/models/index.js +1 -0
- package/dist-es/models/models_0.js +4 -4
- package/dist-es/models/models_1.js +1 -0
- package/dist-es/pagination/ListWorkflowVersionsPaginator.js +4 -0
- package/dist-es/pagination/index.js +1 -0
- package/dist-es/protocols/Aws_restJson1.js +241 -0
- package/dist-es/waiters/index.js +1 -0
- package/dist-es/waiters/waitForWorkflowVersionActive.js +58 -0
- package/dist-types/Omics.d.ts +36 -2
- package/dist-types/OmicsClient.d.ts +8 -4
- package/dist-types/commands/AbortMultipartReadSetUploadCommand.d.ts +1 -3
- package/dist-types/commands/CompleteMultipartReadSetUploadCommand.d.ts +1 -3
- package/dist-types/commands/CreateAnnotationStoreVersionCommand.d.ts +1 -3
- package/dist-types/commands/CreateMultipartReadSetUploadCommand.d.ts +1 -3
- package/dist-types/commands/CreateRunCacheCommand.d.ts +1 -5
- package/dist-types/commands/CreateShareCommand.d.ts +1 -14
- package/dist-types/commands/CreateWorkflowCommand.d.ts +3 -1
- package/dist-types/commands/CreateWorkflowVersionCommand.d.ts +123 -0
- package/dist-types/commands/DeleteAnnotationStoreVersionsCommand.d.ts +1 -3
- package/dist-types/commands/DeleteRunCacheCommand.d.ts +1 -6
- package/dist-types/commands/DeleteS3AccessPolicyCommand.d.ts +1 -3
- package/dist-types/commands/DeleteShareCommand.d.ts +1 -2
- package/dist-types/commands/DeleteWorkflowVersionCommand.d.ts +95 -0
- package/dist-types/commands/GetAnnotationStoreVersionCommand.d.ts +1 -3
- package/dist-types/commands/GetRunCacheCommand.d.ts +1 -2
- package/dist-types/commands/GetRunCommand.d.ts +3 -6
- package/dist-types/commands/GetS3AccessPolicyCommand.d.ts +1 -3
- package/dist-types/commands/GetWorkflowCommand.d.ts +3 -2
- package/dist-types/commands/GetWorkflowVersionCommand.d.ts +130 -0
- package/dist-types/commands/ListAnnotationStoreVersionsCommand.d.ts +1 -3
- package/dist-types/commands/ListMultipartReadSetUploadsCommand.d.ts +2 -5
- package/dist-types/commands/ListReadSetUploadPartsCommand.d.ts +1 -3
- package/dist-types/commands/ListRunsCommand.d.ts +2 -5
- package/dist-types/commands/ListSharesCommand.d.ts +1 -2
- package/dist-types/commands/ListWorkflowVersionsCommand.d.ts +115 -0
- package/dist-types/commands/PutS3AccessPolicyCommand.d.ts +1 -3
- package/dist-types/commands/StartReadSetActivationJobCommand.d.ts +1 -2
- package/dist-types/commands/StartRunCommand.d.ts +2 -12
- package/dist-types/commands/StartVariantImportJobCommand.d.ts +1 -1
- package/dist-types/commands/UntagResourceCommand.d.ts +1 -1
- package/dist-types/commands/UpdateAnnotationStoreVersionCommand.d.ts +1 -3
- package/dist-types/commands/UpdateVariantStoreCommand.d.ts +1 -1
- package/dist-types/commands/UpdateWorkflowCommand.d.ts +4 -2
- package/dist-types/commands/UpdateWorkflowVersionCommand.d.ts +98 -0
- package/dist-types/commands/UploadReadSetPartCommand.d.ts +2 -5
- package/dist-types/commands/index.d.ts +5 -0
- package/dist-types/index.d.ts +1 -2
- package/dist-types/models/index.d.ts +1 -0
- package/dist-types/models/models_0.d.ts +555 -578
- package/dist-types/models/models_1.d.ts +187 -0
- package/dist-types/pagination/ListWorkflowVersionsPaginator.d.ts +7 -0
- package/dist-types/pagination/index.d.ts +1 -0
- package/dist-types/protocols/Aws_restJson1.d.ts +45 -0
- package/dist-types/ts3.4/Omics.d.ts +85 -0
- package/dist-types/ts3.4/OmicsClient.d.ts +30 -0
- package/dist-types/ts3.4/commands/CreateWorkflowVersionCommand.d.ts +51 -0
- package/dist-types/ts3.4/commands/DeleteWorkflowVersionCommand.d.ts +46 -0
- package/dist-types/ts3.4/commands/GetWorkflowVersionCommand.d.ts +51 -0
- package/dist-types/ts3.4/commands/ListWorkflowVersionsCommand.d.ts +51 -0
- package/dist-types/ts3.4/commands/StartVariantImportJobCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UntagResourceCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UpdateVariantStoreCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UpdateWorkflowCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UpdateWorkflowVersionCommand.d.ts +46 -0
- package/dist-types/ts3.4/commands/index.d.ts +5 -0
- package/dist-types/ts3.4/models/index.d.ts +1 -0
- package/dist-types/ts3.4/models/models_0.d.ts +92 -41
- package/dist-types/ts3.4/models/models_1.d.ts +46 -0
- package/dist-types/ts3.4/pagination/ListWorkflowVersionsPaginator.d.ts +11 -0
- package/dist-types/ts3.4/pagination/index.d.ts +1 -0
- package/dist-types/ts3.4/protocols/Aws_restJson1.d.ts +60 -0
- package/dist-types/ts3.4/waiters/index.d.ts +1 -0
- package/dist-types/ts3.4/waiters/waitForWorkflowVersionActive.d.ts +11 -0
- package/dist-types/waiters/index.d.ts +1 -0
- package/dist-types/waiters/waitForWorkflowVersionActive.d.ts +14 -0
- package/package.json +5 -5
|
@@ -47,9 +47,7 @@ export declare class InternalServerException extends __BaseException {
|
|
|
47
47
|
constructor(opts: __ExceptionOptionType<InternalServerException, __BaseException>);
|
|
48
48
|
}
|
|
49
49
|
/**
|
|
50
|
-
* <p>
|
|
51
|
-
* The operation is not supported by Amazon Omics, or the API does not exist.
|
|
52
|
-
* </p>
|
|
50
|
+
* <p> The operation is not supported by Amazon Omics, or the API does not exist. </p>
|
|
53
51
|
* @public
|
|
54
52
|
*/
|
|
55
53
|
export declare class NotSupportedOperationException extends __BaseException {
|
|
@@ -525,9 +523,7 @@ export interface GetAnnotationImportResponse {
|
|
|
525
523
|
*/
|
|
526
524
|
destinationName: string | undefined;
|
|
527
525
|
/**
|
|
528
|
-
* <p>
|
|
529
|
-
* The name of the annotation store version.
|
|
530
|
-
* </p>
|
|
526
|
+
* <p> The name of the annotation store version. </p>
|
|
531
527
|
* @public
|
|
532
528
|
*/
|
|
533
529
|
versionName: string | undefined;
|
|
@@ -639,9 +635,7 @@ export interface AnnotationImportJobItem {
|
|
|
639
635
|
*/
|
|
640
636
|
destinationName: string | undefined;
|
|
641
637
|
/**
|
|
642
|
-
* <p>
|
|
643
|
-
* The name of the annotation store version.
|
|
644
|
-
* </p>
|
|
638
|
+
* <p> The name of the annotation store version. </p>
|
|
645
639
|
* @public
|
|
646
640
|
*/
|
|
647
641
|
versionName: string | undefined;
|
|
@@ -676,9 +670,7 @@ export interface AnnotationImportJobItem {
|
|
|
676
670
|
*/
|
|
677
671
|
runLeftNormalization?: boolean | undefined;
|
|
678
672
|
/**
|
|
679
|
-
* <p>
|
|
680
|
-
* The annotation schema generated by the parsed annotation data.
|
|
681
|
-
* </p>
|
|
673
|
+
* <p> The annotation schema generated by the parsed annotation data. </p>
|
|
682
674
|
* @public
|
|
683
675
|
*/
|
|
684
676
|
annotationFields?: Record<string, string> | undefined;
|
|
@@ -718,9 +710,7 @@ export interface StartAnnotationImportRequest {
|
|
|
718
710
|
*/
|
|
719
711
|
items: AnnotationImportItemSource[] | undefined;
|
|
720
712
|
/**
|
|
721
|
-
* <p>
|
|
722
|
-
* The name of the annotation store version.
|
|
723
|
-
* </p>
|
|
713
|
+
* <p> The name of the annotation store version. </p>
|
|
724
714
|
* @public
|
|
725
715
|
*/
|
|
726
716
|
versionName?: string | undefined;
|
|
@@ -996,9 +986,7 @@ export interface CreateAnnotationStoreRequest {
|
|
|
996
986
|
*/
|
|
997
987
|
tags?: Record<string, string> | undefined;
|
|
998
988
|
/**
|
|
999
|
-
* <p>
|
|
1000
|
-
* The name given to an annotation store version to distinguish it from other versions.
|
|
1001
|
-
* </p>
|
|
989
|
+
* <p> The name given to an annotation store version to distinguish it from other versions. </p>
|
|
1002
990
|
* @public
|
|
1003
991
|
*/
|
|
1004
992
|
versionName?: string | undefined;
|
|
@@ -1083,9 +1071,7 @@ export interface CreateAnnotationStoreResponse {
|
|
|
1083
1071
|
*/
|
|
1084
1072
|
name: string | undefined;
|
|
1085
1073
|
/**
|
|
1086
|
-
* <p>
|
|
1087
|
-
* The name given to an annotation store version to distinguish it from other versions.
|
|
1088
|
-
* </p>
|
|
1074
|
+
* <p> The name given to an annotation store version to distinguish it from other versions. </p>
|
|
1089
1075
|
* @public
|
|
1090
1076
|
*/
|
|
1091
1077
|
versionName: string | undefined;
|
|
@@ -1205,9 +1191,7 @@ export interface GetAnnotationStoreResponse {
|
|
|
1205
1191
|
*/
|
|
1206
1192
|
storeSizeBytes: number | undefined;
|
|
1207
1193
|
/**
|
|
1208
|
-
* <p>
|
|
1209
|
-
* An integer indicating how many versions of an annotation store exist.
|
|
1210
|
-
* </p>
|
|
1194
|
+
* <p> An integer indicating how many versions of an annotation store exist. </p>
|
|
1211
1195
|
* @public
|
|
1212
1196
|
*/
|
|
1213
1197
|
numVersions: number | undefined;
|
|
@@ -1395,38 +1379,28 @@ export interface UpdateAnnotationStoreResponse {
|
|
|
1395
1379
|
storeFormat?: StoreFormat | undefined;
|
|
1396
1380
|
}
|
|
1397
1381
|
/**
|
|
1398
|
-
* <p>
|
|
1399
|
-
* The options for a TSV file.
|
|
1400
|
-
* </p>
|
|
1382
|
+
* <p> The options for a TSV file. </p>
|
|
1401
1383
|
* @public
|
|
1402
1384
|
*/
|
|
1403
1385
|
export interface TsvVersionOptions {
|
|
1404
1386
|
/**
|
|
1405
|
-
* <p>
|
|
1406
|
-
* The store version's annotation type.
|
|
1407
|
-
* </p>
|
|
1387
|
+
* <p> The store version's annotation type. </p>
|
|
1408
1388
|
* @public
|
|
1409
1389
|
*/
|
|
1410
1390
|
annotationType?: AnnotationType | undefined;
|
|
1411
1391
|
/**
|
|
1412
|
-
* <p>
|
|
1413
|
-
* The annotation store version's header key to column name mapping.
|
|
1414
|
-
* </p>
|
|
1392
|
+
* <p> The annotation store version's header key to column name mapping. </p>
|
|
1415
1393
|
* @public
|
|
1416
1394
|
*/
|
|
1417
1395
|
formatToHeader?: Partial<Record<FormatToHeaderKey, string>> | undefined;
|
|
1418
1396
|
/**
|
|
1419
|
-
* <p>
|
|
1420
|
-
* The TSV schema for an annotation store version.
|
|
1421
|
-
* </p>
|
|
1397
|
+
* <p> The TSV schema for an annotation store version. </p>
|
|
1422
1398
|
* @public
|
|
1423
1399
|
*/
|
|
1424
1400
|
schema?: Record<string, SchemaValueType>[] | undefined;
|
|
1425
1401
|
}
|
|
1426
1402
|
/**
|
|
1427
|
-
* <p>
|
|
1428
|
-
* The options for an annotation store version.
|
|
1429
|
-
* </p>
|
|
1403
|
+
* <p> The options for an annotation store version. </p>
|
|
1430
1404
|
* @public
|
|
1431
1405
|
*/
|
|
1432
1406
|
export type VersionOptions = VersionOptions.TsvVersionOptionsMember | VersionOptions.$UnknownMember;
|
|
@@ -1435,9 +1409,7 @@ export type VersionOptions = VersionOptions.TsvVersionOptionsMember | VersionOpt
|
|
|
1435
1409
|
*/
|
|
1436
1410
|
export declare namespace VersionOptions {
|
|
1437
1411
|
/**
|
|
1438
|
-
* <p>
|
|
1439
|
-
* File settings for a version of a TSV store.
|
|
1440
|
-
* </p>
|
|
1412
|
+
* <p> File settings for a version of a TSV store. </p>
|
|
1441
1413
|
* @public
|
|
1442
1414
|
*/
|
|
1443
1415
|
interface TsvVersionOptionsMember {
|
|
@@ -1462,37 +1434,27 @@ export declare namespace VersionOptions {
|
|
|
1462
1434
|
*/
|
|
1463
1435
|
export interface CreateAnnotationStoreVersionRequest {
|
|
1464
1436
|
/**
|
|
1465
|
-
* <p>
|
|
1466
|
-
* The name of an annotation store version from which versions are being created.
|
|
1467
|
-
* </p>
|
|
1437
|
+
* <p> The name of an annotation store version from which versions are being created. </p>
|
|
1468
1438
|
* @public
|
|
1469
1439
|
*/
|
|
1470
1440
|
name: string | undefined;
|
|
1471
1441
|
/**
|
|
1472
|
-
* <p>
|
|
1473
|
-
* The name given to an annotation store version to distinguish it from other versions.
|
|
1474
|
-
* </p>
|
|
1442
|
+
* <p> The name given to an annotation store version to distinguish it from other versions. </p>
|
|
1475
1443
|
* @public
|
|
1476
1444
|
*/
|
|
1477
1445
|
versionName: string | undefined;
|
|
1478
1446
|
/**
|
|
1479
|
-
* <p>
|
|
1480
|
-
* The description of an annotation store version.
|
|
1481
|
-
* </p>
|
|
1447
|
+
* <p> The description of an annotation store version. </p>
|
|
1482
1448
|
* @public
|
|
1483
1449
|
*/
|
|
1484
1450
|
description?: string | undefined;
|
|
1485
1451
|
/**
|
|
1486
|
-
* <p>
|
|
1487
|
-
* The options for an annotation store version.
|
|
1488
|
-
* </p>
|
|
1452
|
+
* <p> The options for an annotation store version. </p>
|
|
1489
1453
|
* @public
|
|
1490
1454
|
*/
|
|
1491
1455
|
versionOptions?: VersionOptions | undefined;
|
|
1492
1456
|
/**
|
|
1493
|
-
* <p>
|
|
1494
|
-
* Any tags added to annotation store version.
|
|
1495
|
-
* </p>
|
|
1457
|
+
* <p> Any tags added to annotation store version. </p>
|
|
1496
1458
|
* @public
|
|
1497
1459
|
*/
|
|
1498
1460
|
tags?: Record<string, string> | undefined;
|
|
@@ -1532,51 +1494,37 @@ export type VersionStatus = (typeof VersionStatus)[keyof typeof VersionStatus];
|
|
|
1532
1494
|
*/
|
|
1533
1495
|
export interface CreateAnnotationStoreVersionResponse {
|
|
1534
1496
|
/**
|
|
1535
|
-
* <p>
|
|
1536
|
-
* A generated ID for the annotation store
|
|
1537
|
-
* </p>
|
|
1497
|
+
* <p> A generated ID for the annotation store </p>
|
|
1538
1498
|
* @public
|
|
1539
1499
|
*/
|
|
1540
1500
|
id: string | undefined;
|
|
1541
1501
|
/**
|
|
1542
|
-
* <p>
|
|
1543
|
-
* The name given to an annotation store version to distinguish it from other versions.
|
|
1544
|
-
* </p>
|
|
1502
|
+
* <p> The name given to an annotation store version to distinguish it from other versions. </p>
|
|
1545
1503
|
* @public
|
|
1546
1504
|
*/
|
|
1547
1505
|
versionName: string | undefined;
|
|
1548
1506
|
/**
|
|
1549
|
-
* <p>
|
|
1550
|
-
* The ID for the annotation store from which new versions are being created.
|
|
1551
|
-
* </p>
|
|
1507
|
+
* <p> The ID for the annotation store from which new versions are being created. </p>
|
|
1552
1508
|
* @public
|
|
1553
1509
|
*/
|
|
1554
1510
|
storeId: string | undefined;
|
|
1555
1511
|
/**
|
|
1556
|
-
* <p>
|
|
1557
|
-
* The options for an annotation store version.
|
|
1558
|
-
* </p>
|
|
1512
|
+
* <p> The options for an annotation store version. </p>
|
|
1559
1513
|
* @public
|
|
1560
1514
|
*/
|
|
1561
1515
|
versionOptions?: VersionOptions | undefined;
|
|
1562
1516
|
/**
|
|
1563
|
-
* <p>
|
|
1564
|
-
* The name given to an annotation store version to distinguish it from other versions.
|
|
1565
|
-
* </p>
|
|
1517
|
+
* <p> The name given to an annotation store version to distinguish it from other versions. </p>
|
|
1566
1518
|
* @public
|
|
1567
1519
|
*/
|
|
1568
1520
|
name: string | undefined;
|
|
1569
1521
|
/**
|
|
1570
|
-
* <p>
|
|
1571
|
-
* The status of a annotation store version.
|
|
1572
|
-
* </p>
|
|
1522
|
+
* <p> The status of a annotation store version. </p>
|
|
1573
1523
|
* @public
|
|
1574
1524
|
*/
|
|
1575
1525
|
status: VersionStatus | undefined;
|
|
1576
1526
|
/**
|
|
1577
|
-
* <p>
|
|
1578
|
-
* The time stamp for the creation of an annotation store version.
|
|
1579
|
-
* </p>
|
|
1527
|
+
* <p> The time stamp for the creation of an annotation store version. </p>
|
|
1580
1528
|
* @public
|
|
1581
1529
|
*/
|
|
1582
1530
|
creationTime: Date | undefined;
|
|
@@ -1586,45 +1534,33 @@ export interface CreateAnnotationStoreVersionResponse {
|
|
|
1586
1534
|
*/
|
|
1587
1535
|
export interface DeleteAnnotationStoreVersionsRequest {
|
|
1588
1536
|
/**
|
|
1589
|
-
* <p>
|
|
1590
|
-
* The name of the annotation store from which versions are being deleted.
|
|
1591
|
-
* </p>
|
|
1537
|
+
* <p> The name of the annotation store from which versions are being deleted. </p>
|
|
1592
1538
|
* @public
|
|
1593
1539
|
*/
|
|
1594
1540
|
name: string | undefined;
|
|
1595
1541
|
/**
|
|
1596
|
-
* <p>
|
|
1597
|
-
* The versions of an annotation store to be deleted.
|
|
1598
|
-
* </p>
|
|
1542
|
+
* <p> The versions of an annotation store to be deleted. </p>
|
|
1599
1543
|
* @public
|
|
1600
1544
|
*/
|
|
1601
1545
|
versions: string[] | undefined;
|
|
1602
1546
|
/**
|
|
1603
|
-
* <p>
|
|
1604
|
-
* Forces the deletion of an annotation store version when imports are in-progress..
|
|
1605
|
-
* </p>
|
|
1547
|
+
* <p> Forces the deletion of an annotation store version when imports are in-progress.. </p>
|
|
1606
1548
|
* @public
|
|
1607
1549
|
*/
|
|
1608
1550
|
force?: boolean | undefined;
|
|
1609
1551
|
}
|
|
1610
1552
|
/**
|
|
1611
|
-
* <p>
|
|
1612
|
-
* The error preventing deletion of the annotation store version.
|
|
1613
|
-
* </p>
|
|
1553
|
+
* <p> The error preventing deletion of the annotation store version. </p>
|
|
1614
1554
|
* @public
|
|
1615
1555
|
*/
|
|
1616
1556
|
export interface VersionDeleteError {
|
|
1617
1557
|
/**
|
|
1618
|
-
* <p>
|
|
1619
|
-
* The name given to an annotation store version.
|
|
1620
|
-
* </p>
|
|
1558
|
+
* <p> The name given to an annotation store version. </p>
|
|
1621
1559
|
* @public
|
|
1622
1560
|
*/
|
|
1623
1561
|
versionName: string | undefined;
|
|
1624
1562
|
/**
|
|
1625
|
-
* <p>
|
|
1626
|
-
* The message explaining the error in annotation store deletion.
|
|
1627
|
-
* </p>
|
|
1563
|
+
* <p> The message explaining the error in annotation store deletion. </p>
|
|
1628
1564
|
* @public
|
|
1629
1565
|
*/
|
|
1630
1566
|
message: string | undefined;
|
|
@@ -1634,9 +1570,7 @@ export interface VersionDeleteError {
|
|
|
1634
1570
|
*/
|
|
1635
1571
|
export interface DeleteAnnotationStoreVersionsResponse {
|
|
1636
1572
|
/**
|
|
1637
|
-
* <p>
|
|
1638
|
-
* Any errors that occur when attempting to delete an annotation store version.
|
|
1639
|
-
* </p>
|
|
1573
|
+
* <p> Any errors that occur when attempting to delete an annotation store version. </p>
|
|
1640
1574
|
* @public
|
|
1641
1575
|
*/
|
|
1642
1576
|
errors?: VersionDeleteError[] | undefined;
|
|
@@ -1646,16 +1580,12 @@ export interface DeleteAnnotationStoreVersionsResponse {
|
|
|
1646
1580
|
*/
|
|
1647
1581
|
export interface GetAnnotationStoreVersionRequest {
|
|
1648
1582
|
/**
|
|
1649
|
-
* <p>
|
|
1650
|
-
* The name given to an annotation store version to distinguish it from others.
|
|
1651
|
-
* </p>
|
|
1583
|
+
* <p> The name given to an annotation store version to distinguish it from others. </p>
|
|
1652
1584
|
* @public
|
|
1653
1585
|
*/
|
|
1654
1586
|
name: string | undefined;
|
|
1655
1587
|
/**
|
|
1656
|
-
* <p>
|
|
1657
|
-
* The name given to an annotation store version to distinguish it from others.
|
|
1658
|
-
* </p>
|
|
1588
|
+
* <p> The name given to an annotation store version to distinguish it from others. </p>
|
|
1659
1589
|
* @public
|
|
1660
1590
|
*/
|
|
1661
1591
|
versionName: string | undefined;
|
|
@@ -1665,100 +1595,73 @@ export interface GetAnnotationStoreVersionRequest {
|
|
|
1665
1595
|
*/
|
|
1666
1596
|
export interface GetAnnotationStoreVersionResponse {
|
|
1667
1597
|
/**
|
|
1668
|
-
* <p>
|
|
1669
|
-
* The store ID for annotation store version.
|
|
1670
|
-
* </p>
|
|
1598
|
+
* <p> The store ID for annotation store version. </p>
|
|
1671
1599
|
* @public
|
|
1672
1600
|
*/
|
|
1673
1601
|
storeId: string | undefined;
|
|
1674
1602
|
/**
|
|
1675
|
-
* <p>
|
|
1676
|
-
* The annotation store version ID.
|
|
1677
|
-
* </p>
|
|
1603
|
+
* <p> The annotation store version ID. </p>
|
|
1678
1604
|
* @public
|
|
1679
1605
|
*/
|
|
1680
1606
|
id: string | undefined;
|
|
1681
1607
|
/**
|
|
1682
|
-
* <p>
|
|
1683
|
-
* The status of an annotation store version.
|
|
1684
|
-
* </p>
|
|
1608
|
+
* <p> The status of an annotation store version. </p>
|
|
1685
1609
|
* @public
|
|
1686
1610
|
*/
|
|
1687
1611
|
status: VersionStatus | undefined;
|
|
1688
1612
|
/**
|
|
1689
|
-
* <p>
|
|
1690
|
-
* The Arn for the annotation store.
|
|
1691
|
-
* </p>
|
|
1613
|
+
* <p> The Arn for the annotation store. </p>
|
|
1692
1614
|
* @public
|
|
1693
1615
|
*/
|
|
1694
1616
|
versionArn: string | undefined;
|
|
1695
1617
|
/**
|
|
1696
|
-
* <p>
|
|
1697
|
-
* The name of the annotation store.
|
|
1698
|
-
* </p>
|
|
1618
|
+
* <p> The name of the annotation store. </p>
|
|
1699
1619
|
* @public
|
|
1700
1620
|
*/
|
|
1701
1621
|
name: string | undefined;
|
|
1702
1622
|
/**
|
|
1703
|
-
* <p>
|
|
1704
|
-
* The name given to an annotation store version to distinguish it from others.
|
|
1705
|
-
* </p>
|
|
1623
|
+
* <p> The name given to an annotation store version to distinguish it from others. </p>
|
|
1706
1624
|
* @public
|
|
1707
1625
|
*/
|
|
1708
1626
|
versionName: string | undefined;
|
|
1709
1627
|
/**
|
|
1710
|
-
* <p>
|
|
1711
|
-
* The description for an annotation store version.
|
|
1712
|
-
* </p>
|
|
1628
|
+
* <p> The description for an annotation store version. </p>
|
|
1713
1629
|
* @public
|
|
1714
1630
|
*/
|
|
1715
1631
|
description: string | undefined;
|
|
1716
1632
|
/**
|
|
1717
|
-
* <p>
|
|
1718
|
-
* The time stamp for when an annotation store version was created.
|
|
1719
|
-
* </p>
|
|
1633
|
+
* <p> The time stamp for when an annotation store version was created. </p>
|
|
1720
1634
|
* @public
|
|
1721
1635
|
*/
|
|
1722
1636
|
creationTime: Date | undefined;
|
|
1723
1637
|
/**
|
|
1724
|
-
* <p>
|
|
1725
|
-
* The time stamp for when an annotation store version was updated.
|
|
1726
|
-
* </p>
|
|
1638
|
+
* <p> The time stamp for when an annotation store version was updated. </p>
|
|
1727
1639
|
* @public
|
|
1728
1640
|
*/
|
|
1729
1641
|
updateTime: Date | undefined;
|
|
1730
1642
|
/**
|
|
1731
|
-
* <p>
|
|
1732
|
-
* Any tags associated with an annotation store version.
|
|
1733
|
-
* </p>
|
|
1643
|
+
* <p> Any tags associated with an annotation store version. </p>
|
|
1734
1644
|
* @public
|
|
1735
1645
|
*/
|
|
1736
1646
|
tags: Record<string, string> | undefined;
|
|
1737
1647
|
/**
|
|
1738
|
-
* <p>
|
|
1739
|
-
* The options for an annotation store version.
|
|
1740
|
-
* </p>
|
|
1648
|
+
* <p> The options for an annotation store version. </p>
|
|
1741
1649
|
* @public
|
|
1742
1650
|
*/
|
|
1743
1651
|
versionOptions?: VersionOptions | undefined;
|
|
1744
1652
|
/**
|
|
1745
|
-
* <p>
|
|
1746
|
-
* The status of an annotation store version.
|
|
1747
|
-
* </p>
|
|
1653
|
+
* <p> The status of an annotation store version. </p>
|
|
1748
1654
|
* @public
|
|
1749
1655
|
*/
|
|
1750
1656
|
statusMessage: string | undefined;
|
|
1751
1657
|
/**
|
|
1752
|
-
* <p>
|
|
1753
|
-
* The size of the annotation store version in Bytes.
|
|
1754
|
-
* </p>
|
|
1658
|
+
* <p> The size of the annotation store version in Bytes. </p>
|
|
1755
1659
|
* @public
|
|
1756
1660
|
*/
|
|
1757
1661
|
versionSizeBytes: number | undefined;
|
|
1758
1662
|
}
|
|
1759
1663
|
/**
|
|
1760
|
-
* <p>Use filters to focus the returned annotation store versions on a specific parameter,
|
|
1761
|
-
* such as the status of the annotation store.</p>
|
|
1664
|
+
* <p>Use filters to focus the returned annotation store versions on a specific parameter, such as the status of the annotation store.</p>
|
|
1762
1665
|
* @public
|
|
1763
1666
|
*/
|
|
1764
1667
|
export interface ListAnnotationStoreVersionsFilter {
|
|
@@ -1773,115 +1676,83 @@ export interface ListAnnotationStoreVersionsFilter {
|
|
|
1773
1676
|
*/
|
|
1774
1677
|
export interface ListAnnotationStoreVersionsRequest {
|
|
1775
1678
|
/**
|
|
1776
|
-
* <p>
|
|
1777
|
-
* The name of an annotation store.
|
|
1778
|
-
* </p>
|
|
1679
|
+
* <p> The name of an annotation store. </p>
|
|
1779
1680
|
* @public
|
|
1780
1681
|
*/
|
|
1781
1682
|
name: string | undefined;
|
|
1782
1683
|
/**
|
|
1783
|
-
* <p>
|
|
1784
|
-
* The maximum number of annotation store versions to return in one page of results.
|
|
1785
|
-
* </p>
|
|
1684
|
+
* <p> The maximum number of annotation store versions to return in one page of results. </p>
|
|
1786
1685
|
* @public
|
|
1787
1686
|
*/
|
|
1788
1687
|
maxResults?: number | undefined;
|
|
1789
1688
|
/**
|
|
1790
|
-
* <p>
|
|
1791
|
-
* Specifies the pagination token from a previous request to retrieve the next page of results.
|
|
1792
|
-
* </p>
|
|
1689
|
+
* <p> Specifies the pagination token from a previous request to retrieve the next page of results. </p>
|
|
1793
1690
|
* @public
|
|
1794
1691
|
*/
|
|
1795
1692
|
nextToken?: string | undefined;
|
|
1796
1693
|
/**
|
|
1797
|
-
* <p>
|
|
1798
|
-
* A filter to apply to the list of annotation store versions.
|
|
1799
|
-
* </p>
|
|
1694
|
+
* <p> A filter to apply to the list of annotation store versions. </p>
|
|
1800
1695
|
* @public
|
|
1801
1696
|
*/
|
|
1802
1697
|
filter?: ListAnnotationStoreVersionsFilter | undefined;
|
|
1803
1698
|
}
|
|
1804
1699
|
/**
|
|
1805
|
-
* <p>
|
|
1806
|
-
* Annotation store versions.
|
|
1807
|
-
* </p>
|
|
1700
|
+
* <p> Annotation store versions. </p>
|
|
1808
1701
|
* @public
|
|
1809
1702
|
*/
|
|
1810
1703
|
export interface AnnotationStoreVersionItem {
|
|
1811
1704
|
/**
|
|
1812
|
-
* <p>
|
|
1813
|
-
* The store ID for an annotation store version.
|
|
1814
|
-
* </p>
|
|
1705
|
+
* <p> The store ID for an annotation store version. </p>
|
|
1815
1706
|
* @public
|
|
1816
1707
|
*/
|
|
1817
1708
|
storeId: string | undefined;
|
|
1818
1709
|
/**
|
|
1819
|
-
* <p>
|
|
1820
|
-
* The annotation store version ID.
|
|
1821
|
-
* </p>
|
|
1710
|
+
* <p> The annotation store version ID. </p>
|
|
1822
1711
|
* @public
|
|
1823
1712
|
*/
|
|
1824
1713
|
id: string | undefined;
|
|
1825
1714
|
/**
|
|
1826
|
-
* <p>
|
|
1827
|
-
* The status of an annotation store version.
|
|
1828
|
-
* </p>
|
|
1715
|
+
* <p> The status of an annotation store version. </p>
|
|
1829
1716
|
* @public
|
|
1830
1717
|
*/
|
|
1831
1718
|
status: VersionStatus | undefined;
|
|
1832
1719
|
/**
|
|
1833
|
-
* <p>
|
|
1834
|
-
* The Arn for an annotation store version.
|
|
1835
|
-
* </p>
|
|
1720
|
+
* <p> The Arn for an annotation store version. </p>
|
|
1836
1721
|
* @public
|
|
1837
1722
|
*/
|
|
1838
1723
|
versionArn: string | undefined;
|
|
1839
1724
|
/**
|
|
1840
|
-
* <p>
|
|
1841
|
-
* A name given to an annotation store version to distinguish it from others.
|
|
1842
|
-
* </p>
|
|
1725
|
+
* <p> A name given to an annotation store version to distinguish it from others. </p>
|
|
1843
1726
|
* @public
|
|
1844
1727
|
*/
|
|
1845
1728
|
name: string | undefined;
|
|
1846
1729
|
/**
|
|
1847
|
-
* <p>
|
|
1848
|
-
* The name of an annotation store version.
|
|
1849
|
-
* </p>
|
|
1730
|
+
* <p> The name of an annotation store version. </p>
|
|
1850
1731
|
* @public
|
|
1851
1732
|
*/
|
|
1852
1733
|
versionName: string | undefined;
|
|
1853
1734
|
/**
|
|
1854
|
-
* <p>
|
|
1855
|
-
* The description of an annotation store version.
|
|
1856
|
-
* </p>
|
|
1735
|
+
* <p> The description of an annotation store version. </p>
|
|
1857
1736
|
* @public
|
|
1858
1737
|
*/
|
|
1859
1738
|
description: string | undefined;
|
|
1860
1739
|
/**
|
|
1861
|
-
* <p>
|
|
1862
|
-
* The time stamp for when an annotation store version was created.
|
|
1863
|
-
* </p>
|
|
1740
|
+
* <p> The time stamp for when an annotation store version was created. </p>
|
|
1864
1741
|
* @public
|
|
1865
1742
|
*/
|
|
1866
1743
|
creationTime: Date | undefined;
|
|
1867
1744
|
/**
|
|
1868
|
-
* <p>
|
|
1869
|
-
* The time stamp for when an annotation store version was updated.
|
|
1870
|
-
* </p>
|
|
1745
|
+
* <p> The time stamp for when an annotation store version was updated. </p>
|
|
1871
1746
|
* @public
|
|
1872
1747
|
*/
|
|
1873
1748
|
updateTime: Date | undefined;
|
|
1874
1749
|
/**
|
|
1875
|
-
* <p>
|
|
1876
|
-
* The status of an annotation store version.
|
|
1877
|
-
* </p>
|
|
1750
|
+
* <p> The status of an annotation store version. </p>
|
|
1878
1751
|
* @public
|
|
1879
1752
|
*/
|
|
1880
1753
|
statusMessage: string | undefined;
|
|
1881
1754
|
/**
|
|
1882
|
-
* <p>
|
|
1883
|
-
* The size of an annotation store version in Bytes.
|
|
1884
|
-
* </p>
|
|
1755
|
+
* <p> The size of an annotation store version in Bytes. </p>
|
|
1885
1756
|
* @public
|
|
1886
1757
|
*/
|
|
1887
1758
|
versionSizeBytes: number | undefined;
|
|
@@ -1891,16 +1762,12 @@ export interface AnnotationStoreVersionItem {
|
|
|
1891
1762
|
*/
|
|
1892
1763
|
export interface ListAnnotationStoreVersionsResponse {
|
|
1893
1764
|
/**
|
|
1894
|
-
* <p>
|
|
1895
|
-
* Lists all versions of an annotation store.
|
|
1896
|
-
* </p>
|
|
1765
|
+
* <p> Lists all versions of an annotation store. </p>
|
|
1897
1766
|
* @public
|
|
1898
1767
|
*/
|
|
1899
1768
|
annotationStoreVersions?: AnnotationStoreVersionItem[] | undefined;
|
|
1900
1769
|
/**
|
|
1901
|
-
* <p>
|
|
1902
|
-
* Specifies the pagination token from a previous request to retrieve the next page of results.
|
|
1903
|
-
* </p>
|
|
1770
|
+
* <p> Specifies the pagination token from a previous request to retrieve the next page of results. </p>
|
|
1904
1771
|
* @public
|
|
1905
1772
|
*/
|
|
1906
1773
|
nextToken?: string | undefined;
|
|
@@ -1910,23 +1777,17 @@ export interface ListAnnotationStoreVersionsResponse {
|
|
|
1910
1777
|
*/
|
|
1911
1778
|
export interface UpdateAnnotationStoreVersionRequest {
|
|
1912
1779
|
/**
|
|
1913
|
-
* <p>
|
|
1914
|
-
* The name of an annotation store.
|
|
1915
|
-
* </p>
|
|
1780
|
+
* <p> The name of an annotation store. </p>
|
|
1916
1781
|
* @public
|
|
1917
1782
|
*/
|
|
1918
1783
|
name: string | undefined;
|
|
1919
1784
|
/**
|
|
1920
|
-
* <p>
|
|
1921
|
-
* The name of an annotation store version.
|
|
1922
|
-
* </p>
|
|
1785
|
+
* <p> The name of an annotation store version. </p>
|
|
1923
1786
|
* @public
|
|
1924
1787
|
*/
|
|
1925
1788
|
versionName: string | undefined;
|
|
1926
1789
|
/**
|
|
1927
|
-
* <p>
|
|
1928
|
-
* The description of an annotation store.
|
|
1929
|
-
* </p>
|
|
1790
|
+
* <p> The description of an annotation store. </p>
|
|
1930
1791
|
* @public
|
|
1931
1792
|
*/
|
|
1932
1793
|
description?: string | undefined;
|
|
@@ -1936,57 +1797,42 @@ export interface UpdateAnnotationStoreVersionRequest {
|
|
|
1936
1797
|
*/
|
|
1937
1798
|
export interface UpdateAnnotationStoreVersionResponse {
|
|
1938
1799
|
/**
|
|
1939
|
-
* <p>
|
|
1940
|
-
* The annotation store ID.
|
|
1941
|
-
* </p>
|
|
1800
|
+
* <p> The annotation store ID. </p>
|
|
1942
1801
|
* @public
|
|
1943
1802
|
*/
|
|
1944
1803
|
storeId: string | undefined;
|
|
1945
1804
|
/**
|
|
1946
|
-
* <p>
|
|
1947
|
-
* The annotation store version ID.
|
|
1948
|
-
* </p>
|
|
1805
|
+
* <p> The annotation store version ID. </p>
|
|
1949
1806
|
* @public
|
|
1950
1807
|
*/
|
|
1951
1808
|
id: string | undefined;
|
|
1952
1809
|
/**
|
|
1953
|
-
* <p>
|
|
1954
|
-
* The status of an annotation store version.
|
|
1955
|
-
* </p>
|
|
1810
|
+
* <p> The status of an annotation store version. </p>
|
|
1956
1811
|
* @public
|
|
1957
1812
|
*/
|
|
1958
1813
|
status: VersionStatus | undefined;
|
|
1959
1814
|
/**
|
|
1960
|
-
* <p>
|
|
1961
|
-
* The name of an annotation store.
|
|
1962
|
-
* </p>
|
|
1815
|
+
* <p> The name of an annotation store. </p>
|
|
1963
1816
|
* @public
|
|
1964
1817
|
*/
|
|
1965
1818
|
name: string | undefined;
|
|
1966
1819
|
/**
|
|
1967
|
-
* <p>
|
|
1968
|
-
* The name of an annotation store version. </p>
|
|
1820
|
+
* <p> The name of an annotation store version. </p>
|
|
1969
1821
|
* @public
|
|
1970
1822
|
*/
|
|
1971
1823
|
versionName: string | undefined;
|
|
1972
1824
|
/**
|
|
1973
|
-
* <p>
|
|
1974
|
-
* The description of an annotation store version.
|
|
1975
|
-
* </p>
|
|
1825
|
+
* <p> The description of an annotation store version. </p>
|
|
1976
1826
|
* @public
|
|
1977
1827
|
*/
|
|
1978
1828
|
description: string | undefined;
|
|
1979
1829
|
/**
|
|
1980
|
-
* <p>
|
|
1981
|
-
* The time stamp for when an annotation store version was created.
|
|
1982
|
-
* </p>
|
|
1830
|
+
* <p> The time stamp for when an annotation store version was created. </p>
|
|
1983
1831
|
* @public
|
|
1984
1832
|
*/
|
|
1985
1833
|
creationTime: Date | undefined;
|
|
1986
1834
|
/**
|
|
1987
|
-
* <p>
|
|
1988
|
-
* The time stamp for when an annotation store version was updated.
|
|
1989
|
-
* </p>
|
|
1835
|
+
* <p> The time stamp for when an annotation store version was updated. </p>
|
|
1990
1836
|
* @public
|
|
1991
1837
|
*/
|
|
1992
1838
|
updateTime: Date | undefined;
|
|
@@ -2087,30 +1933,22 @@ export declare const ReadSetPartSource: {
|
|
|
2087
1933
|
*/
|
|
2088
1934
|
export type ReadSetPartSource = (typeof ReadSetPartSource)[keyof typeof ReadSetPartSource];
|
|
2089
1935
|
/**
|
|
2090
|
-
* <p>
|
|
2091
|
-
* Part of the response to the CompleteReadSetUpload API, including metadata.
|
|
2092
|
-
* </p>
|
|
1936
|
+
* <p> Part of the response to the CompleteReadSetUpload API, including metadata. </p>
|
|
2093
1937
|
* @public
|
|
2094
1938
|
*/
|
|
2095
1939
|
export interface CompleteReadSetUploadPartListItem {
|
|
2096
1940
|
/**
|
|
2097
|
-
* <p>
|
|
2098
|
-
* A number identifying the part in a read set upload.
|
|
2099
|
-
* </p>
|
|
1941
|
+
* <p> A number identifying the part in a read set upload. </p>
|
|
2100
1942
|
* @public
|
|
2101
1943
|
*/
|
|
2102
1944
|
partNumber: number | undefined;
|
|
2103
1945
|
/**
|
|
2104
|
-
* <p>
|
|
2105
|
-
* The source file of the part being uploaded.
|
|
2106
|
-
* </p>
|
|
1946
|
+
* <p> The source file of the part being uploaded. </p>
|
|
2107
1947
|
* @public
|
|
2108
1948
|
*/
|
|
2109
1949
|
partSource: ReadSetPartSource | undefined;
|
|
2110
1950
|
/**
|
|
2111
|
-
* <p>
|
|
2112
|
-
* A unique identifier used to confirm that parts are being added to the correct upload.
|
|
2113
|
-
* </p>
|
|
1951
|
+
* <p> A unique identifier used to confirm that parts are being added to the correct upload. </p>
|
|
2114
1952
|
* @public
|
|
2115
1953
|
*/
|
|
2116
1954
|
checksum: string | undefined;
|
|
@@ -2344,24 +2182,12 @@ export interface CreateReferenceStoreResponse {
|
|
|
2344
2182
|
*/
|
|
2345
2183
|
export interface CreateRunCacheRequest {
|
|
2346
2184
|
/**
|
|
2347
|
-
* <p>Default cache behavior for runs that use this cache. Supported values are:</p>
|
|
2348
|
-
* <p>
|
|
2349
|
-
* <code>CACHE_ON_FAILURE</code>: Caches task outputs from completed tasks for runs that fail. This setting is
|
|
2350
|
-
* useful if you're debugging a workflow that fails after several
|
|
2351
|
-
* tasks completed successfully. The subsequent run uses the cache outputs for previously-completed tasks if the task definition,
|
|
2352
|
-
* inputs, and container in ECR are identical to the prior run.</p>
|
|
2353
|
-
* <p>
|
|
2354
|
-
* <code>CACHE_ALWAYS</code>: Caches task outputs from completed tasks for all runs. This setting
|
|
2355
|
-
* is useful in development mode, but do not use it in a production setting.</p>
|
|
2356
|
-
* <p>If you don't specify a value, the default behavior is CACHE_ON_FAILURE.
|
|
2357
|
-
* When you start a run that uses this cache, you can override the default cache behavior.</p>
|
|
2358
|
-
* <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/how-run-cache.html#run-cache-behavior">Run cache behavior</a> in the AWS HealthOmics User Guide.</p>
|
|
2185
|
+
* <p>Default cache behavior for runs that use this cache. Supported values are:</p> <p> <code>CACHE_ON_FAILURE</code>: Caches task outputs from completed tasks for runs that fail. This setting is useful if you're debugging a workflow that fails after several tasks completed successfully. The subsequent run uses the cache outputs for previously-completed tasks if the task definition, inputs, and container in ECR are identical to the prior run.</p> <p> <code>CACHE_ALWAYS</code>: Caches task outputs from completed tasks for all runs. This setting is useful in development mode, but do not use it in a production setting.</p> <p>If you don't specify a value, the default behavior is CACHE_ON_FAILURE. When you start a run that uses this cache, you can override the default cache behavior.</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/how-run-cache.html#run-cache-behavior">Run cache behavior</a> in the Amazon Web Services HealthOmics User Guide.</p>
|
|
2359
2186
|
* @public
|
|
2360
2187
|
*/
|
|
2361
2188
|
cacheBehavior?: CacheBehavior | undefined;
|
|
2362
2189
|
/**
|
|
2363
|
-
* <p>Specify the S3 location for storing the cached task outputs.
|
|
2364
|
-
* This data must be immediately accessible (not in an archived state).</p>
|
|
2190
|
+
* <p>Specify the S3 location for storing the cached task outputs. This data must be immediately accessible (not in an archived state).</p>
|
|
2365
2191
|
* @public
|
|
2366
2192
|
*/
|
|
2367
2193
|
cacheS3Location: string | undefined;
|
|
@@ -2376,8 +2202,7 @@ export interface CreateRunCacheRequest {
|
|
|
2376
2202
|
*/
|
|
2377
2203
|
name?: string | undefined;
|
|
2378
2204
|
/**
|
|
2379
|
-
* <p>A unique request token, to ensure idempotency. If you don't specify a token,
|
|
2380
|
-
* HealthOmics automatically generates a universally unique identifier (UUID) for the request.</p>
|
|
2205
|
+
* <p>A unique request token, to ensure idempotency. If you don't specify a token, Amazon Web Services HealthOmics automatically generates a universally unique identifier (UUID) for the request.</p>
|
|
2381
2206
|
* @public
|
|
2382
2207
|
*/
|
|
2383
2208
|
requestId?: string | undefined;
|
|
@@ -2387,8 +2212,7 @@ export interface CreateRunCacheRequest {
|
|
|
2387
2212
|
*/
|
|
2388
2213
|
tags?: Record<string, string> | undefined;
|
|
2389
2214
|
/**
|
|
2390
|
-
* <p>The
|
|
2391
|
-
* If not provided, your account ID is set as the owner of the bucket.</p>
|
|
2215
|
+
* <p>The Amazon Web Services account ID of the expected owner of the S3 bucket for the run cache. If not provided, your account ID is set as the owner of the bucket.</p>
|
|
2392
2216
|
* @public
|
|
2393
2217
|
*/
|
|
2394
2218
|
cacheBucketOwnerId?: string | undefined;
|
|
@@ -2441,8 +2265,7 @@ export interface CreateRunGroupRequest {
|
|
|
2441
2265
|
*/
|
|
2442
2266
|
name?: string | undefined;
|
|
2443
2267
|
/**
|
|
2444
|
-
* <p>The maximum number of CPUs that can run
|
|
2445
|
-
* concurrently across all active runs in the run group.</p>
|
|
2268
|
+
* <p>The maximum number of CPUs that can run concurrently across all active runs in the run group.</p>
|
|
2446
2269
|
* @public
|
|
2447
2270
|
*/
|
|
2448
2271
|
maxCpus?: number | undefined;
|
|
@@ -2452,8 +2275,7 @@ export interface CreateRunGroupRequest {
|
|
|
2452
2275
|
*/
|
|
2453
2276
|
maxRuns?: number | undefined;
|
|
2454
2277
|
/**
|
|
2455
|
-
* <p>The maximum time for each run (in minutes). If a run exceeds
|
|
2456
|
-
* the maximum run time, the run fails automatically.</p>
|
|
2278
|
+
* <p>The maximum time for each run (in minutes). If a run exceeds the maximum run time, the run fails automatically.</p>
|
|
2457
2279
|
* @public
|
|
2458
2280
|
*/
|
|
2459
2281
|
maxDuration?: number | undefined;
|
|
@@ -2468,8 +2290,7 @@ export interface CreateRunGroupRequest {
|
|
|
2468
2290
|
*/
|
|
2469
2291
|
requestId?: string | undefined;
|
|
2470
2292
|
/**
|
|
2471
|
-
* <p>The maximum number of GPUs that can run concurrently across all active
|
|
2472
|
-
* runs in the run group.</p>
|
|
2293
|
+
* <p>The maximum number of GPUs that can run concurrently across all active runs in the run group.</p>
|
|
2473
2294
|
* @public
|
|
2474
2295
|
*/
|
|
2475
2296
|
maxGpus?: number | undefined;
|
|
@@ -2798,6 +2619,18 @@ export interface WorkflowParameter {
|
|
|
2798
2619
|
*/
|
|
2799
2620
|
optional?: boolean | undefined;
|
|
2800
2621
|
}
|
|
2622
|
+
/**
|
|
2623
|
+
* @public
|
|
2624
|
+
* @enum
|
|
2625
|
+
*/
|
|
2626
|
+
export declare const StorageType: {
|
|
2627
|
+
readonly DYNAMIC: "DYNAMIC";
|
|
2628
|
+
readonly STATIC: "STATIC";
|
|
2629
|
+
};
|
|
2630
|
+
/**
|
|
2631
|
+
* @public
|
|
2632
|
+
*/
|
|
2633
|
+
export type StorageType = (typeof StorageType)[keyof typeof StorageType];
|
|
2801
2634
|
/**
|
|
2802
2635
|
* @public
|
|
2803
2636
|
*/
|
|
@@ -2813,7 +2646,7 @@ export interface CreateWorkflowRequest {
|
|
|
2813
2646
|
*/
|
|
2814
2647
|
description?: string | undefined;
|
|
2815
2648
|
/**
|
|
2816
|
-
* <p>
|
|
2649
|
+
* <p>The workflow engine for the workflow.</p>
|
|
2817
2650
|
* @public
|
|
2818
2651
|
*/
|
|
2819
2652
|
engine?: WorkflowEngine | undefined;
|
|
@@ -2838,7 +2671,7 @@ export interface CreateWorkflowRequest {
|
|
|
2838
2671
|
*/
|
|
2839
2672
|
parameterTemplate?: Record<string, WorkflowParameter> | undefined;
|
|
2840
2673
|
/**
|
|
2841
|
-
* <p>The default storage capacity for
|
|
2674
|
+
* <p>The default static storage capacity (in gibibytes) for runs that use this workflow or workflow version.</p>
|
|
2842
2675
|
* @public
|
|
2843
2676
|
*/
|
|
2844
2677
|
storageCapacity?: number | undefined;
|
|
@@ -2857,6 +2690,11 @@ export interface CreateWorkflowRequest {
|
|
|
2857
2690
|
* @public
|
|
2858
2691
|
*/
|
|
2859
2692
|
accelerators?: Accelerators | undefined;
|
|
2693
|
+
/**
|
|
2694
|
+
* <p> The default storage type for runs that use this workflow. STATIC storage allocates a fixed amount of storage. DYNAMIC storage dynamically scales the storage up or down, based on file system utilization. For more information about static and dynamic storage, see <a href="https://docs.aws.amazon.com/omics/latest/dev/Using-workflows.html">Running workflows</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
|
|
2695
|
+
* @public
|
|
2696
|
+
*/
|
|
2697
|
+
storageType?: StorageType | undefined;
|
|
2860
2698
|
}
|
|
2861
2699
|
/**
|
|
2862
2700
|
* @public
|
|
@@ -2898,6 +2736,121 @@ export interface CreateWorkflowResponse {
|
|
|
2898
2736
|
* @public
|
|
2899
2737
|
*/
|
|
2900
2738
|
tags?: Record<string, string> | undefined;
|
|
2739
|
+
/**
|
|
2740
|
+
* <p>The universally unique identifier (UUID) value for this workflow.</p>
|
|
2741
|
+
* @public
|
|
2742
|
+
*/
|
|
2743
|
+
uuid?: string | undefined;
|
|
2744
|
+
}
|
|
2745
|
+
/**
|
|
2746
|
+
* @public
|
|
2747
|
+
*/
|
|
2748
|
+
export interface CreateWorkflowVersionRequest {
|
|
2749
|
+
/**
|
|
2750
|
+
* <p>The ID of the workflow where you are creating the new version.</p>
|
|
2751
|
+
* @public
|
|
2752
|
+
*/
|
|
2753
|
+
workflowId: string | undefined;
|
|
2754
|
+
/**
|
|
2755
|
+
* <p>A name for the workflow version. Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version. </p> <p>The version name must start with a letter or number and it can include upper-case and lower-case letters, numbers, hyphens, periods and underscores. The maximum length is 64 characters. You can use a simple naming scheme, such as version1, version2, version3. You can also match your workflow versions with your own internal versioning conventions, such as 2.7.0, 2.7.1, 2.7.2.</p>
|
|
2756
|
+
* @public
|
|
2757
|
+
*/
|
|
2758
|
+
versionName: string | undefined;
|
|
2759
|
+
/**
|
|
2760
|
+
* <p>A zip archive containing the workflow definition for this workflow version.</p>
|
|
2761
|
+
* @public
|
|
2762
|
+
*/
|
|
2763
|
+
definitionZip?: Uint8Array | undefined;
|
|
2764
|
+
/**
|
|
2765
|
+
* <p>The URI specifies the location of the workflow definition for this workflow version.</p>
|
|
2766
|
+
* @public
|
|
2767
|
+
*/
|
|
2768
|
+
definitionUri?: string | undefined;
|
|
2769
|
+
/**
|
|
2770
|
+
* <p>The computational accelerator for this workflow version.</p>
|
|
2771
|
+
* @public
|
|
2772
|
+
*/
|
|
2773
|
+
accelerators?: Accelerators | undefined;
|
|
2774
|
+
/**
|
|
2775
|
+
* <p>A description for this workflow version.</p>
|
|
2776
|
+
* @public
|
|
2777
|
+
*/
|
|
2778
|
+
description?: string | undefined;
|
|
2779
|
+
/**
|
|
2780
|
+
* <p>The workflow engine for this workflow version.</p>
|
|
2781
|
+
* @public
|
|
2782
|
+
*/
|
|
2783
|
+
engine?: WorkflowEngine | undefined;
|
|
2784
|
+
/**
|
|
2785
|
+
* <p>The path of the main definition file for this workflow version.</p>
|
|
2786
|
+
* @public
|
|
2787
|
+
*/
|
|
2788
|
+
main?: string | undefined;
|
|
2789
|
+
/**
|
|
2790
|
+
* <p>The parameter template defines the input parameters for runs that use this workflow version.</p>
|
|
2791
|
+
* @public
|
|
2792
|
+
*/
|
|
2793
|
+
parameterTemplate?: Record<string, WorkflowParameter> | undefined;
|
|
2794
|
+
/**
|
|
2795
|
+
* <p>To ensure that requests don't run multiple times, specify a unique ID for each request.</p>
|
|
2796
|
+
* @public
|
|
2797
|
+
*/
|
|
2798
|
+
requestId?: string | undefined;
|
|
2799
|
+
/**
|
|
2800
|
+
* <p>The default storage type for runs that use this workflow. STATIC storage allocates a fixed amount of storage. DYNAMIC storage dynamically scales the storage up or down, based on file system utilization. For more information about static and dynamic storage, see <a href="https://docs.aws.amazon.com/omics/latest/dev/Using-workflows.html">Running workflows</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
|
|
2801
|
+
* @public
|
|
2802
|
+
*/
|
|
2803
|
+
storageType?: StorageType | undefined;
|
|
2804
|
+
/**
|
|
2805
|
+
* <p>The default static storage capacity (in gibibytes) for runs that use this workflow or workflow version.</p>
|
|
2806
|
+
* @public
|
|
2807
|
+
*/
|
|
2808
|
+
storageCapacity?: number | undefined;
|
|
2809
|
+
/**
|
|
2810
|
+
* <p>Optional tags to associate with this workflow version.</p>
|
|
2811
|
+
* @public
|
|
2812
|
+
*/
|
|
2813
|
+
tags?: Record<string, string> | undefined;
|
|
2814
|
+
/**
|
|
2815
|
+
* <p>Amazon Web Services Id of the owner of the S3 bucket that contains the workflow definition. You need to specify this parameter if your account is not the bucket owner.</p>
|
|
2816
|
+
* @public
|
|
2817
|
+
*/
|
|
2818
|
+
workflowBucketOwnerId?: string | undefined;
|
|
2819
|
+
}
|
|
2820
|
+
/**
|
|
2821
|
+
* @public
|
|
2822
|
+
*/
|
|
2823
|
+
export interface CreateWorkflowVersionResponse {
|
|
2824
|
+
/**
|
|
2825
|
+
* <p>ARN of the workflow version.</p>
|
|
2826
|
+
* @public
|
|
2827
|
+
*/
|
|
2828
|
+
arn?: string | undefined;
|
|
2829
|
+
/**
|
|
2830
|
+
* <p>The workflow's ID.</p>
|
|
2831
|
+
* @public
|
|
2832
|
+
*/
|
|
2833
|
+
workflowId?: string | undefined;
|
|
2834
|
+
/**
|
|
2835
|
+
* <p>The workflow version name.</p>
|
|
2836
|
+
* @public
|
|
2837
|
+
*/
|
|
2838
|
+
versionName?: string | undefined;
|
|
2839
|
+
/**
|
|
2840
|
+
* <p>The workflow version status.</p>
|
|
2841
|
+
* @public
|
|
2842
|
+
*/
|
|
2843
|
+
status?: WorkflowStatus | undefined;
|
|
2844
|
+
/**
|
|
2845
|
+
* <p>The workflow version's tags.</p>
|
|
2846
|
+
* @public
|
|
2847
|
+
*/
|
|
2848
|
+
tags?: Record<string, string> | undefined;
|
|
2849
|
+
/**
|
|
2850
|
+
* <p>The universally unique identifier (UUID) value for this workflow version.</p>
|
|
2851
|
+
* @public
|
|
2852
|
+
*/
|
|
2853
|
+
uuid?: string | undefined;
|
|
2901
2854
|
}
|
|
2902
2855
|
/**
|
|
2903
2856
|
* @public
|
|
@@ -3061,6 +3014,21 @@ export interface DeleteWorkflowRequest {
|
|
|
3061
3014
|
*/
|
|
3062
3015
|
id: string | undefined;
|
|
3063
3016
|
}
|
|
3017
|
+
/**
|
|
3018
|
+
* @public
|
|
3019
|
+
*/
|
|
3020
|
+
export interface DeleteWorkflowVersionRequest {
|
|
3021
|
+
/**
|
|
3022
|
+
* <p>The workflow's ID.</p>
|
|
3023
|
+
* @public
|
|
3024
|
+
*/
|
|
3025
|
+
workflowId: string | undefined;
|
|
3026
|
+
/**
|
|
3027
|
+
* <p>The workflow version name.</p>
|
|
3028
|
+
* @public
|
|
3029
|
+
*/
|
|
3030
|
+
versionName: string | undefined;
|
|
3031
|
+
}
|
|
3064
3032
|
/**
|
|
3065
3033
|
* @public
|
|
3066
3034
|
* @enum
|
|
@@ -3281,8 +3249,7 @@ export declare const ShareResourceType: {
|
|
|
3281
3249
|
*/
|
|
3282
3250
|
export type ShareResourceType = (typeof ShareResourceType)[keyof typeof ShareResourceType];
|
|
3283
3251
|
/**
|
|
3284
|
-
* <p>Use filters to return a subset of resources.
|
|
3285
|
-
* such as the resource status.</p>
|
|
3252
|
+
* <p>Use filters to return a subset of resources. You can define filters for specific parameters, such as the resource status.</p>
|
|
3286
3253
|
* @public
|
|
3287
3254
|
*/
|
|
3288
3255
|
export interface Filter {
|
|
@@ -3805,9 +3772,7 @@ export interface GetReadSetMetadataResponse {
|
|
|
3805
3772
|
*/
|
|
3806
3773
|
statusMessage?: string | undefined;
|
|
3807
3774
|
/**
|
|
3808
|
-
* <p>
|
|
3809
|
-
* The creation type of the read set.
|
|
3810
|
-
* </p>
|
|
3775
|
+
* <p> The creation type of the read set. </p>
|
|
3811
3776
|
* @public
|
|
3812
3777
|
*/
|
|
3813
3778
|
creationType?: CreationType | undefined;
|
|
@@ -4257,18 +4222,6 @@ export declare const RunStatus: {
|
|
|
4257
4222
|
* @public
|
|
4258
4223
|
*/
|
|
4259
4224
|
export type RunStatus = (typeof RunStatus)[keyof typeof RunStatus];
|
|
4260
|
-
/**
|
|
4261
|
-
* @public
|
|
4262
|
-
* @enum
|
|
4263
|
-
*/
|
|
4264
|
-
export declare const StorageType: {
|
|
4265
|
-
readonly DYNAMIC: "DYNAMIC";
|
|
4266
|
-
readonly STATIC: "STATIC";
|
|
4267
|
-
};
|
|
4268
|
-
/**
|
|
4269
|
-
* @public
|
|
4270
|
-
*/
|
|
4271
|
-
export type StorageType = (typeof StorageType)[keyof typeof StorageType];
|
|
4272
4225
|
/**
|
|
4273
4226
|
* @public
|
|
4274
4227
|
* @enum
|
|
@@ -4306,7 +4259,7 @@ export interface GetRunResponse {
|
|
|
4306
4259
|
*/
|
|
4307
4260
|
cacheBehavior?: CacheBehavior | undefined;
|
|
4308
4261
|
/**
|
|
4309
|
-
* <p>The
|
|
4262
|
+
* <p>The actual Nextflow engine version that Amazon Web Services HealthOmics used for the run. The other workflow definition languages don't provide a value for this field.</p>
|
|
4310
4263
|
* @public
|
|
4311
4264
|
*/
|
|
4312
4265
|
engineVersion?: string | undefined;
|
|
@@ -4366,9 +4319,7 @@ export interface GetRunResponse {
|
|
|
4366
4319
|
*/
|
|
4367
4320
|
parameters?: __DocumentType | undefined;
|
|
4368
4321
|
/**
|
|
4369
|
-
* <p>The run's storage capacity in gibibytes. For dynamic storage,
|
|
4370
|
-
* after the run has completed, this value is the maximum amount of storage
|
|
4371
|
-
* used during the run.</p>
|
|
4322
|
+
* <p>The run's storage capacity in gibibytes. For dynamic storage, after the run has completed, this value is the maximum amount of storage used during the run.</p>
|
|
4372
4323
|
* @public
|
|
4373
4324
|
*/
|
|
4374
4325
|
storageCapacity?: number | undefined;
|
|
@@ -4457,6 +4408,16 @@ export interface GetRunResponse {
|
|
|
4457
4408
|
* @public
|
|
4458
4409
|
*/
|
|
4459
4410
|
workflowOwnerId?: string | undefined;
|
|
4411
|
+
/**
|
|
4412
|
+
* <p>The workflow version name.</p>
|
|
4413
|
+
* @public
|
|
4414
|
+
*/
|
|
4415
|
+
workflowVersionName?: string | undefined;
|
|
4416
|
+
/**
|
|
4417
|
+
* <p>The universally unique identifier (UUID) value for the workflow.</p>
|
|
4418
|
+
* @public
|
|
4419
|
+
*/
|
|
4420
|
+
workflowUuid?: string | undefined;
|
|
4460
4421
|
}
|
|
4461
4422
|
/**
|
|
4462
4423
|
* @public
|
|
@@ -4640,7 +4601,7 @@ export interface GetRunTaskResponse {
|
|
|
4640
4601
|
*/
|
|
4641
4602
|
cpus?: number | undefined;
|
|
4642
4603
|
/**
|
|
4643
|
-
* <p>Set to true if
|
|
4604
|
+
* <p>Set to true if Amazon Web Services HealthOmics found a matching entry in the run cache for this task.</p>
|
|
4644
4605
|
* @public
|
|
4645
4606
|
*/
|
|
4646
4607
|
cacheHit?: boolean | undefined;
|
|
@@ -4727,7 +4688,7 @@ export interface GetS3AccessPolicyResponse {
|
|
|
4727
4688
|
*/
|
|
4728
4689
|
s3AccessPointArn?: string | undefined;
|
|
4729
4690
|
/**
|
|
4730
|
-
* <p>The
|
|
4691
|
+
* <p>The Amazon Web Services-generated Sequence Store or Reference Store ID.</p>
|
|
4731
4692
|
* @public
|
|
4732
4693
|
*/
|
|
4733
4694
|
storeId?: string | undefined;
|
|
@@ -5165,7 +5126,7 @@ export interface GetWorkflowResponse {
|
|
|
5165
5126
|
*/
|
|
5166
5127
|
parameterTemplate?: Record<string, WorkflowParameter> | undefined;
|
|
5167
5128
|
/**
|
|
5168
|
-
* <p>The
|
|
5129
|
+
* <p>The default static storage capacity (in gibibytes) for runs that use this workflow or workflow version.</p>
|
|
5169
5130
|
* @public
|
|
5170
5131
|
*/
|
|
5171
5132
|
storageCapacity?: number | undefined;
|
|
@@ -5185,7 +5146,7 @@ export interface GetWorkflowResponse {
|
|
|
5185
5146
|
*/
|
|
5186
5147
|
tags?: Record<string, string> | undefined;
|
|
5187
5148
|
/**
|
|
5188
|
-
* <p>Gets metadata for workflow.</p>
|
|
5149
|
+
* <p>Gets metadata for the workflow.</p>
|
|
5189
5150
|
* @public
|
|
5190
5151
|
*/
|
|
5191
5152
|
metadata?: Record<string, string> | undefined;
|
|
@@ -5194,6 +5155,151 @@ export interface GetWorkflowResponse {
|
|
|
5194
5155
|
* @public
|
|
5195
5156
|
*/
|
|
5196
5157
|
accelerators?: Accelerators | undefined;
|
|
5158
|
+
/**
|
|
5159
|
+
* <p>The default storage type for runs using this workflow.</p>
|
|
5160
|
+
* @public
|
|
5161
|
+
*/
|
|
5162
|
+
storageType?: StorageType | undefined;
|
|
5163
|
+
/**
|
|
5164
|
+
* <p>The universally unique identifier (UUID) value for this workflow.</p>
|
|
5165
|
+
* @public
|
|
5166
|
+
*/
|
|
5167
|
+
uuid?: string | undefined;
|
|
5168
|
+
}
|
|
5169
|
+
/**
|
|
5170
|
+
* @public
|
|
5171
|
+
*/
|
|
5172
|
+
export interface GetWorkflowVersionRequest {
|
|
5173
|
+
/**
|
|
5174
|
+
* <p>The workflow's ID.</p>
|
|
5175
|
+
* @public
|
|
5176
|
+
*/
|
|
5177
|
+
workflowId: string | undefined;
|
|
5178
|
+
/**
|
|
5179
|
+
* <p>The workflow version name.</p>
|
|
5180
|
+
* @public
|
|
5181
|
+
*/
|
|
5182
|
+
versionName: string | undefined;
|
|
5183
|
+
/**
|
|
5184
|
+
* <p>The workflow's type. </p>
|
|
5185
|
+
* @public
|
|
5186
|
+
*/
|
|
5187
|
+
type?: WorkflowType | undefined;
|
|
5188
|
+
/**
|
|
5189
|
+
* <p>The export format for the workflow.</p>
|
|
5190
|
+
* @public
|
|
5191
|
+
*/
|
|
5192
|
+
export?: WorkflowExport[] | undefined;
|
|
5193
|
+
/**
|
|
5194
|
+
* <p>Amazon Web Services Id of the owner of the workflow.</p>
|
|
5195
|
+
* @public
|
|
5196
|
+
*/
|
|
5197
|
+
workflowOwnerId?: string | undefined;
|
|
5198
|
+
}
|
|
5199
|
+
/**
|
|
5200
|
+
* @public
|
|
5201
|
+
*/
|
|
5202
|
+
export interface GetWorkflowVersionResponse {
|
|
5203
|
+
/**
|
|
5204
|
+
* <p>ARN of the workflow version.</p>
|
|
5205
|
+
* @public
|
|
5206
|
+
*/
|
|
5207
|
+
arn?: string | undefined;
|
|
5208
|
+
/**
|
|
5209
|
+
* <p>The workflow's ID.</p>
|
|
5210
|
+
* @public
|
|
5211
|
+
*/
|
|
5212
|
+
workflowId?: string | undefined;
|
|
5213
|
+
/**
|
|
5214
|
+
* <p>The workflow version name.</p>
|
|
5215
|
+
* @public
|
|
5216
|
+
*/
|
|
5217
|
+
versionName?: string | undefined;
|
|
5218
|
+
/**
|
|
5219
|
+
* <p>The accelerator for this workflow version.</p>
|
|
5220
|
+
* @public
|
|
5221
|
+
*/
|
|
5222
|
+
accelerators?: Accelerators | undefined;
|
|
5223
|
+
/**
|
|
5224
|
+
* <p>When the workflow version was created.</p>
|
|
5225
|
+
* @public
|
|
5226
|
+
*/
|
|
5227
|
+
creationTime?: Date | undefined;
|
|
5228
|
+
/**
|
|
5229
|
+
* <p>Description of the workflow version.</p>
|
|
5230
|
+
* @public
|
|
5231
|
+
*/
|
|
5232
|
+
description?: string | undefined;
|
|
5233
|
+
/**
|
|
5234
|
+
* <p>Definition of the workflow version.</p>
|
|
5235
|
+
* @public
|
|
5236
|
+
*/
|
|
5237
|
+
definition?: string | undefined;
|
|
5238
|
+
/**
|
|
5239
|
+
* <p>The workflow version's digest.</p>
|
|
5240
|
+
* @public
|
|
5241
|
+
*/
|
|
5242
|
+
digest?: string | undefined;
|
|
5243
|
+
/**
|
|
5244
|
+
* <p>The workflow engine for this workflow version.</p>
|
|
5245
|
+
* @public
|
|
5246
|
+
*/
|
|
5247
|
+
engine?: WorkflowEngine | undefined;
|
|
5248
|
+
/**
|
|
5249
|
+
* <p>The path of the main definition file for the workflow.</p>
|
|
5250
|
+
* @public
|
|
5251
|
+
*/
|
|
5252
|
+
main?: string | undefined;
|
|
5253
|
+
/**
|
|
5254
|
+
* <p>The metadata for the workflow version.</p>
|
|
5255
|
+
* @public
|
|
5256
|
+
*/
|
|
5257
|
+
metadata?: Record<string, string> | undefined;
|
|
5258
|
+
/**
|
|
5259
|
+
* <p>The parameter template for the workflow version.</p>
|
|
5260
|
+
* @public
|
|
5261
|
+
*/
|
|
5262
|
+
parameterTemplate?: Record<string, WorkflowParameter> | undefined;
|
|
5263
|
+
/**
|
|
5264
|
+
* <p>The workflow version status</p>
|
|
5265
|
+
* @public
|
|
5266
|
+
*/
|
|
5267
|
+
status?: WorkflowStatus | undefined;
|
|
5268
|
+
/**
|
|
5269
|
+
* <p>The workflow version status message</p>
|
|
5270
|
+
* @public
|
|
5271
|
+
*/
|
|
5272
|
+
statusMessage?: string | undefined;
|
|
5273
|
+
/**
|
|
5274
|
+
* <p>The default storage type for the run.</p>
|
|
5275
|
+
* @public
|
|
5276
|
+
*/
|
|
5277
|
+
storageType?: StorageType | undefined;
|
|
5278
|
+
/**
|
|
5279
|
+
* <p>The default run storage capacity for static storage.</p>
|
|
5280
|
+
* @public
|
|
5281
|
+
*/
|
|
5282
|
+
storageCapacity?: number | undefined;
|
|
5283
|
+
/**
|
|
5284
|
+
* <p>The workflow version type</p>
|
|
5285
|
+
* @public
|
|
5286
|
+
*/
|
|
5287
|
+
type?: WorkflowType | undefined;
|
|
5288
|
+
/**
|
|
5289
|
+
* <p>The workflow version tags</p>
|
|
5290
|
+
* @public
|
|
5291
|
+
*/
|
|
5292
|
+
tags?: Record<string, string> | undefined;
|
|
5293
|
+
/**
|
|
5294
|
+
* <p>The universally unique identifier (UUID) value for this workflow version</p>
|
|
5295
|
+
* @public
|
|
5296
|
+
*/
|
|
5297
|
+
uuid?: string | undefined;
|
|
5298
|
+
/**
|
|
5299
|
+
* <p>Amazon Web Services Id of the owner of the bucket.</p>
|
|
5300
|
+
* @public
|
|
5301
|
+
*/
|
|
5302
|
+
workflowBucketOwnerId?: string | undefined;
|
|
5197
5303
|
}
|
|
5198
5304
|
/**
|
|
5199
5305
|
* <p>A filter for import read set jobs.</p>
|
|
@@ -5324,93 +5430,68 @@ export interface ListMultipartReadSetUploadsRequest {
|
|
|
5324
5430
|
*/
|
|
5325
5431
|
maxResults?: number | undefined;
|
|
5326
5432
|
/**
|
|
5327
|
-
* <p>Next token returned in the response of a previous ListMultipartReadSetUploads call.
|
|
5328
|
-
* Used to get the next page of results.</p>
|
|
5433
|
+
* <p>Next token returned in the response of a previous ListMultipartReadSetUploads call. Used to get the next page of results.</p>
|
|
5329
5434
|
* @public
|
|
5330
5435
|
*/
|
|
5331
5436
|
nextToken?: string | undefined;
|
|
5332
5437
|
}
|
|
5333
5438
|
/**
|
|
5334
|
-
* <p>
|
|
5335
|
-
* Part of the response to ListMultipartReadSetUploads, excluding completed and aborted multipart uploads.
|
|
5336
|
-
* </p>
|
|
5439
|
+
* <p> Part of the response to ListMultipartReadSetUploads, excluding completed and aborted multipart uploads. </p>
|
|
5337
5440
|
* @public
|
|
5338
5441
|
*/
|
|
5339
5442
|
export interface MultipartReadSetUploadListItem {
|
|
5340
5443
|
/**
|
|
5341
|
-
* <p>
|
|
5342
|
-
* The sequence store ID used for the multipart upload.
|
|
5343
|
-
* </p>
|
|
5444
|
+
* <p> The sequence store ID used for the multipart upload. </p>
|
|
5344
5445
|
* @public
|
|
5345
5446
|
*/
|
|
5346
5447
|
sequenceStoreId: string | undefined;
|
|
5347
5448
|
/**
|
|
5348
|
-
* <p>
|
|
5349
|
-
* The ID for the initiated multipart upload.
|
|
5350
|
-
* </p>
|
|
5449
|
+
* <p> The ID for the initiated multipart upload. </p>
|
|
5351
5450
|
* @public
|
|
5352
5451
|
*/
|
|
5353
5452
|
uploadId: string | undefined;
|
|
5354
5453
|
/**
|
|
5355
|
-
* <p>
|
|
5356
|
-
* The type of file the read set originated from.
|
|
5357
|
-
* </p>
|
|
5454
|
+
* <p> The type of file the read set originated from. </p>
|
|
5358
5455
|
* @public
|
|
5359
5456
|
*/
|
|
5360
5457
|
sourceFileType: FileType | undefined;
|
|
5361
5458
|
/**
|
|
5362
|
-
* <p>
|
|
5363
|
-
* The read set source's subject ID.
|
|
5364
|
-
* </p>
|
|
5459
|
+
* <p> The read set source's subject ID. </p>
|
|
5365
5460
|
* @public
|
|
5366
5461
|
*/
|
|
5367
5462
|
subjectId: string | undefined;
|
|
5368
5463
|
/**
|
|
5369
|
-
* <p>
|
|
5370
|
-
* The read set source's sample ID.
|
|
5371
|
-
* </p>
|
|
5464
|
+
* <p> The read set source's sample ID. </p>
|
|
5372
5465
|
* @public
|
|
5373
5466
|
*/
|
|
5374
5467
|
sampleId: string | undefined;
|
|
5375
5468
|
/**
|
|
5376
|
-
* <p>
|
|
5377
|
-
* The source of an uploaded part.
|
|
5378
|
-
* </p>
|
|
5469
|
+
* <p> The source of an uploaded part. </p>
|
|
5379
5470
|
* @public
|
|
5380
5471
|
*/
|
|
5381
5472
|
generatedFrom: string | undefined;
|
|
5382
5473
|
/**
|
|
5383
|
-
* <p>
|
|
5384
|
-
* The source's reference ARN.
|
|
5385
|
-
* </p>
|
|
5474
|
+
* <p> The source's reference ARN. </p>
|
|
5386
5475
|
* @public
|
|
5387
5476
|
*/
|
|
5388
5477
|
referenceArn: string | undefined;
|
|
5389
5478
|
/**
|
|
5390
|
-
* <p>
|
|
5391
|
-
* The name of a read set.
|
|
5392
|
-
* </p>
|
|
5479
|
+
* <p> The name of a read set. </p>
|
|
5393
5480
|
* @public
|
|
5394
5481
|
*/
|
|
5395
5482
|
name?: string | undefined;
|
|
5396
5483
|
/**
|
|
5397
|
-
* <p>
|
|
5398
|
-
* The description of a read set.
|
|
5399
|
-
* </p>
|
|
5484
|
+
* <p> The description of a read set. </p>
|
|
5400
5485
|
* @public
|
|
5401
5486
|
*/
|
|
5402
5487
|
description?: string | undefined;
|
|
5403
5488
|
/**
|
|
5404
|
-
* <p>
|
|
5405
|
-
* Any tags you wish to add to a read set.
|
|
5406
|
-
* </p>
|
|
5489
|
+
* <p> Any tags you wish to add to a read set. </p>
|
|
5407
5490
|
* @public
|
|
5408
5491
|
*/
|
|
5409
5492
|
tags?: Record<string, string> | undefined;
|
|
5410
5493
|
/**
|
|
5411
|
-
* <p>
|
|
5412
|
-
* The time stamp for when a direct upload was created.
|
|
5413
|
-
* </p>
|
|
5494
|
+
* <p> The time stamp for when a direct upload was created. </p>
|
|
5414
5495
|
* @public
|
|
5415
5496
|
*/
|
|
5416
5497
|
creationTime: Date | undefined;
|
|
@@ -5420,8 +5501,7 @@ export interface MultipartReadSetUploadListItem {
|
|
|
5420
5501
|
*/
|
|
5421
5502
|
export interface ListMultipartReadSetUploadsResponse {
|
|
5422
5503
|
/**
|
|
5423
|
-
* <p>Next token returned in the response of a previous ListMultipartReadSetUploads call.
|
|
5424
|
-
* Used to get the next page of results.</p>
|
|
5504
|
+
* <p>Next token returned in the response of a previous ListMultipartReadSetUploads call. Used to get the next page of results.</p>
|
|
5425
5505
|
* @public
|
|
5426
5506
|
*/
|
|
5427
5507
|
nextToken?: string | undefined;
|
|
@@ -5582,30 +5662,22 @@ export interface ReadSetFilter {
|
|
|
5582
5662
|
*/
|
|
5583
5663
|
createdBefore?: Date | undefined;
|
|
5584
5664
|
/**
|
|
5585
|
-
* <p>
|
|
5586
|
-
* The read set source's sample ID.
|
|
5587
|
-
* </p>
|
|
5665
|
+
* <p> The read set source's sample ID. </p>
|
|
5588
5666
|
* @public
|
|
5589
5667
|
*/
|
|
5590
5668
|
sampleId?: string | undefined;
|
|
5591
5669
|
/**
|
|
5592
|
-
* <p>
|
|
5593
|
-
* The read set source's subject ID.
|
|
5594
|
-
* </p>
|
|
5670
|
+
* <p> The read set source's subject ID. </p>
|
|
5595
5671
|
* @public
|
|
5596
5672
|
*/
|
|
5597
5673
|
subjectId?: string | undefined;
|
|
5598
5674
|
/**
|
|
5599
|
-
* <p>
|
|
5600
|
-
* Where the source originated.
|
|
5601
|
-
* </p>
|
|
5675
|
+
* <p> Where the source originated. </p>
|
|
5602
5676
|
* @public
|
|
5603
5677
|
*/
|
|
5604
5678
|
generatedFrom?: string | undefined;
|
|
5605
5679
|
/**
|
|
5606
|
-
* <p>
|
|
5607
|
-
* The creation type of the read set.
|
|
5608
|
-
* </p>
|
|
5680
|
+
* <p> The creation type of the read set. </p>
|
|
5609
5681
|
* @public
|
|
5610
5682
|
*/
|
|
5611
5683
|
creationType?: CreationType | undefined;
|
|
@@ -5701,16 +5773,12 @@ export interface ReadSetListItem {
|
|
|
5701
5773
|
*/
|
|
5702
5774
|
creationTime: Date | undefined;
|
|
5703
5775
|
/**
|
|
5704
|
-
* <p>
|
|
5705
|
-
* The status for a read set. It provides more detail as to why the read set has a status.
|
|
5706
|
-
* </p>
|
|
5776
|
+
* <p> The status for a read set. It provides more detail as to why the read set has a status. </p>
|
|
5707
5777
|
* @public
|
|
5708
5778
|
*/
|
|
5709
5779
|
statusMessage?: string | undefined;
|
|
5710
5780
|
/**
|
|
5711
|
-
* <p>
|
|
5712
|
-
* The creation type of the read set.
|
|
5713
|
-
* </p>
|
|
5781
|
+
* <p> The creation type of the read set. </p>
|
|
5714
5782
|
* @public
|
|
5715
5783
|
*/
|
|
5716
5784
|
creationType?: CreationType | undefined;
|
|
@@ -5736,23 +5804,17 @@ export interface ListReadSetsResponse {
|
|
|
5736
5804
|
readSets: ReadSetListItem[] | undefined;
|
|
5737
5805
|
}
|
|
5738
5806
|
/**
|
|
5739
|
-
* <p>
|
|
5740
|
-
* Filter settings that select for read set upload parts of interest.
|
|
5741
|
-
* </p>
|
|
5807
|
+
* <p> Filter settings that select for read set upload parts of interest. </p>
|
|
5742
5808
|
* @public
|
|
5743
5809
|
*/
|
|
5744
5810
|
export interface ReadSetUploadPartListFilter {
|
|
5745
5811
|
/**
|
|
5746
|
-
* <p>
|
|
5747
|
-
* Filters for read set uploads after a specified time.
|
|
5748
|
-
* </p>
|
|
5812
|
+
* <p> Filters for read set uploads after a specified time. </p>
|
|
5749
5813
|
* @public
|
|
5750
5814
|
*/
|
|
5751
5815
|
createdAfter?: Date | undefined;
|
|
5752
5816
|
/**
|
|
5753
|
-
* <p>
|
|
5754
|
-
* Filters for read set part uploads before a specified time.
|
|
5755
|
-
* </p>
|
|
5817
|
+
* <p> Filters for read set part uploads before a specified time. </p>
|
|
5756
5818
|
* @public
|
|
5757
5819
|
*/
|
|
5758
5820
|
createdBefore?: Date | undefined;
|
|
@@ -5782,8 +5844,7 @@ export interface ListReadSetUploadPartsRequest {
|
|
|
5782
5844
|
*/
|
|
5783
5845
|
maxResults?: number | undefined;
|
|
5784
5846
|
/**
|
|
5785
|
-
* <p>Next token returned in the response of a previous ListReadSetUploadPartsRequest call.
|
|
5786
|
-
* Used to get the next page of results.</p>
|
|
5847
|
+
* <p>Next token returned in the response of a previous ListReadSetUploadPartsRequest call. Used to get the next page of results.</p>
|
|
5787
5848
|
* @public
|
|
5788
5849
|
*/
|
|
5789
5850
|
nextToken?: string | undefined;
|
|
@@ -5794,51 +5855,37 @@ export interface ListReadSetUploadPartsRequest {
|
|
|
5794
5855
|
filter?: ReadSetUploadPartListFilter | undefined;
|
|
5795
5856
|
}
|
|
5796
5857
|
/**
|
|
5797
|
-
* <p>
|
|
5798
|
-
* The metadata of a single part of a file that was added to a multipart upload. A list of these parts is returned in the response to the ListReadSetUploadParts API.
|
|
5799
|
-
* </p>
|
|
5858
|
+
* <p> The metadata of a single part of a file that was added to a multipart upload. A list of these parts is returned in the response to the ListReadSetUploadParts API. </p>
|
|
5800
5859
|
* @public
|
|
5801
5860
|
*/
|
|
5802
5861
|
export interface ReadSetUploadPartListItem {
|
|
5803
5862
|
/**
|
|
5804
|
-
* <p>
|
|
5805
|
-
* The number identifying the part in an upload.
|
|
5806
|
-
* </p>
|
|
5863
|
+
* <p> The number identifying the part in an upload. </p>
|
|
5807
5864
|
* @public
|
|
5808
5865
|
*/
|
|
5809
5866
|
partNumber: number | undefined;
|
|
5810
5867
|
/**
|
|
5811
|
-
* <p>
|
|
5812
|
-
* The size of the the part in an upload.
|
|
5813
|
-
* </p>
|
|
5868
|
+
* <p> The size of the the part in an upload. </p>
|
|
5814
5869
|
* @public
|
|
5815
5870
|
*/
|
|
5816
5871
|
partSize: number | undefined;
|
|
5817
5872
|
/**
|
|
5818
|
-
* <p>
|
|
5819
|
-
* The origin of the part being direct uploaded.
|
|
5820
|
-
* </p>
|
|
5873
|
+
* <p> The origin of the part being direct uploaded. </p>
|
|
5821
5874
|
* @public
|
|
5822
5875
|
*/
|
|
5823
5876
|
partSource: ReadSetPartSource | undefined;
|
|
5824
5877
|
/**
|
|
5825
|
-
* <p>
|
|
5826
|
-
* A unique identifier used to confirm that parts are being added to the correct upload.
|
|
5827
|
-
* </p>
|
|
5878
|
+
* <p> A unique identifier used to confirm that parts are being added to the correct upload. </p>
|
|
5828
5879
|
* @public
|
|
5829
5880
|
*/
|
|
5830
5881
|
checksum: string | undefined;
|
|
5831
5882
|
/**
|
|
5832
|
-
* <p>
|
|
5833
|
-
* The time stamp for when a direct upload was created.
|
|
5834
|
-
* </p>
|
|
5883
|
+
* <p> The time stamp for when a direct upload was created. </p>
|
|
5835
5884
|
* @public
|
|
5836
5885
|
*/
|
|
5837
5886
|
creationTime?: Date | undefined;
|
|
5838
5887
|
/**
|
|
5839
|
-
* <p>
|
|
5840
|
-
* The time stamp for the most recent update to an uploaded part.
|
|
5841
|
-
* </p>
|
|
5888
|
+
* <p> The time stamp for the most recent update to an uploaded part. </p>
|
|
5842
5889
|
* @public
|
|
5843
5890
|
*/
|
|
5844
5891
|
lastUpdatedTime?: Date | undefined;
|
|
@@ -5848,8 +5895,7 @@ export interface ReadSetUploadPartListItem {
|
|
|
5848
5895
|
*/
|
|
5849
5896
|
export interface ListReadSetUploadPartsResponse {
|
|
5850
5897
|
/**
|
|
5851
|
-
* <p>Next token returned in the response of a previous ListReadSetUploadParts call.
|
|
5852
|
-
* Used to get the next page of results.</p>
|
|
5898
|
+
* <p>Next token returned in the response of a previous ListReadSetUploadParts call. Used to get the next page of results.</p>
|
|
5853
5899
|
* @public
|
|
5854
5900
|
*/
|
|
5855
5901
|
nextToken?: string | undefined;
|
|
@@ -6174,8 +6220,7 @@ export interface ListRunCachesResponse {
|
|
|
6174
6220
|
*/
|
|
6175
6221
|
items?: RunCacheListItem[] | undefined;
|
|
6176
6222
|
/**
|
|
6177
|
-
* <p>Pagination token to retrieve additional run caches. If the response does not have a
|
|
6178
|
-
* <code>nextToken</code>value, you have reached to the end of the list.</p>
|
|
6223
|
+
* <p>Pagination token to retrieve additional run caches. If the response does not have a <code>nextToken</code>value, you have reached to the end of the list.</p>
|
|
6179
6224
|
* @public
|
|
6180
6225
|
*/
|
|
6181
6226
|
nextToken?: string | undefined;
|
|
@@ -6241,9 +6286,7 @@ export interface RunGroupListItem {
|
|
|
6241
6286
|
*/
|
|
6242
6287
|
creationTime?: Date | undefined;
|
|
6243
6288
|
/**
|
|
6244
|
-
* <p>
|
|
6245
|
-
* The maximum GPUs that can be used by a run group.
|
|
6246
|
-
* </p>
|
|
6289
|
+
* <p> The maximum GPUs that can be used by a run group. </p>
|
|
6247
6290
|
* @public
|
|
6248
6291
|
*/
|
|
6249
6292
|
maxGpus?: number | undefined;
|
|
@@ -6329,9 +6372,7 @@ export interface RunListItem {
|
|
|
6329
6372
|
*/
|
|
6330
6373
|
priority?: number | undefined;
|
|
6331
6374
|
/**
|
|
6332
|
-
* <p>The run's storage capacity in gibibytes. For dynamic storage,
|
|
6333
|
-
* after the run has completed, this value is the maximum amount of storage
|
|
6334
|
-
* used during the run.</p>
|
|
6375
|
+
* <p>The run's storage capacity in gibibytes. For dynamic storage, after the run has completed, this value is the maximum amount of storage used during the run.</p>
|
|
6335
6376
|
* @public
|
|
6336
6377
|
*/
|
|
6337
6378
|
storageCapacity?: number | undefined;
|
|
@@ -6355,6 +6396,11 @@ export interface RunListItem {
|
|
|
6355
6396
|
* @public
|
|
6356
6397
|
*/
|
|
6357
6398
|
storageType?: StorageType | undefined;
|
|
6399
|
+
/**
|
|
6400
|
+
* <p>The name of the workflow version.</p>
|
|
6401
|
+
* @public
|
|
6402
|
+
*/
|
|
6403
|
+
workflowVersionName?: string | undefined;
|
|
6358
6404
|
}
|
|
6359
6405
|
/**
|
|
6360
6406
|
* @public
|
|
@@ -6422,7 +6468,7 @@ export interface TaskListItem {
|
|
|
6422
6468
|
*/
|
|
6423
6469
|
cpus?: number | undefined;
|
|
6424
6470
|
/**
|
|
6425
|
-
* <p>Set to true if
|
|
6471
|
+
* <p>Set to true if Amazon Web Services HealthOmics found a matching entry in the run cache for this task.</p>
|
|
6426
6472
|
* @public
|
|
6427
6473
|
*/
|
|
6428
6474
|
cacheHit?: boolean | undefined;
|
|
@@ -6452,9 +6498,7 @@ export interface TaskListItem {
|
|
|
6452
6498
|
*/
|
|
6453
6499
|
stopTime?: Date | undefined;
|
|
6454
6500
|
/**
|
|
6455
|
-
* <p>
|
|
6456
|
-
* The number of Graphics Processing Units (GPU) specified for the task.
|
|
6457
|
-
* </p>
|
|
6501
|
+
* <p> The number of Graphics Processing Units (GPU) specified for the task. </p>
|
|
6458
6502
|
* @public
|
|
6459
6503
|
*/
|
|
6460
6504
|
gpus?: number | undefined;
|
|
@@ -6571,9 +6615,7 @@ export interface SequenceStoreDetail {
|
|
|
6571
6615
|
*/
|
|
6572
6616
|
creationTime: Date | undefined;
|
|
6573
6617
|
/**
|
|
6574
|
-
* <p>
|
|
6575
|
-
* An S3 location that is used to store files that have failed a direct upload.
|
|
6576
|
-
* </p>
|
|
6618
|
+
* <p> An S3 location that is used to store files that have failed a direct upload. </p>
|
|
6577
6619
|
* @public
|
|
6578
6620
|
*/
|
|
6579
6621
|
fallbackLocation?: string | undefined;
|
|
@@ -6646,8 +6688,7 @@ export interface ListSharesRequest {
|
|
|
6646
6688
|
*/
|
|
6647
6689
|
filter?: Filter | undefined;
|
|
6648
6690
|
/**
|
|
6649
|
-
* <p>Next token returned in the response of a previous ListReadSetUploadPartsRequest call.
|
|
6650
|
-
* Used to get the next page of results.</p>
|
|
6691
|
+
* <p>Next token returned in the response of a previous ListReadSetUploadPartsRequest call. Used to get the next page of results.</p>
|
|
6651
6692
|
* @public
|
|
6652
6693
|
*/
|
|
6653
6694
|
nextToken?: string | undefined;
|
|
@@ -6667,9 +6708,7 @@ export interface ListSharesResponse {
|
|
|
6667
6708
|
*/
|
|
6668
6709
|
shares: ShareDetails[] | undefined;
|
|
6669
6710
|
/**
|
|
6670
|
-
* <p>
|
|
6671
|
-
* Next token returned in the response of a previous ListSharesResponse call. Used to get the next page of results.
|
|
6672
|
-
* </p>
|
|
6711
|
+
* <p> Next token returned in the response of a previous ListSharesResponse call. Used to get the next page of results. </p>
|
|
6673
6712
|
* @public
|
|
6674
6713
|
*/
|
|
6675
6714
|
nextToken?: string | undefined;
|
|
@@ -6781,9 +6820,7 @@ export interface VariantImportJobItem {
|
|
|
6781
6820
|
*/
|
|
6782
6821
|
runLeftNormalization?: boolean | undefined;
|
|
6783
6822
|
/**
|
|
6784
|
-
* <p>
|
|
6785
|
-
* The annotation schema generated by the parsed annotation data.
|
|
6786
|
-
* </p>
|
|
6823
|
+
* <p> The annotation schema generated by the parsed annotation data. </p>
|
|
6787
6824
|
* @public
|
|
6788
6825
|
*/
|
|
6789
6826
|
annotationFields?: Record<string, string> | undefined;
|
|
@@ -6981,9 +7018,7 @@ export interface WorkflowListItem {
|
|
|
6981
7018
|
*/
|
|
6982
7019
|
creationTime?: Date | undefined;
|
|
6983
7020
|
/**
|
|
6984
|
-
* <p>
|
|
6985
|
-
* Any metadata available for workflow. The information listed may vary depending on the workflow, and there may also be no metadata to return.
|
|
6986
|
-
* </p>
|
|
7021
|
+
* <p> Any metadata available for workflow. The information listed may vary depending on the workflow, and there may also be no metadata to return. </p>
|
|
6987
7022
|
* @public
|
|
6988
7023
|
*/
|
|
6989
7024
|
metadata?: Record<string, string> | undefined;
|
|
@@ -7003,6 +7038,102 @@ export interface ListWorkflowsResponse {
|
|
|
7003
7038
|
*/
|
|
7004
7039
|
nextToken?: string | undefined;
|
|
7005
7040
|
}
|
|
7041
|
+
/**
|
|
7042
|
+
* @public
|
|
7043
|
+
*/
|
|
7044
|
+
export interface ListWorkflowVersionsRequest {
|
|
7045
|
+
/**
|
|
7046
|
+
* <p>The workflow's ID.</p>
|
|
7047
|
+
* @public
|
|
7048
|
+
*/
|
|
7049
|
+
workflowId: string | undefined;
|
|
7050
|
+
/**
|
|
7051
|
+
* <p>The workflow type.</p>
|
|
7052
|
+
* @public
|
|
7053
|
+
*/
|
|
7054
|
+
type?: WorkflowType | undefined;
|
|
7055
|
+
/**
|
|
7056
|
+
* <p>Amazon Web Services Id of the owner of the workflow.</p>
|
|
7057
|
+
* @public
|
|
7058
|
+
*/
|
|
7059
|
+
workflowOwnerId?: string | undefined;
|
|
7060
|
+
/**
|
|
7061
|
+
* <p>Specify the pagination token from a previous request to retrieve the next page of results.</p>
|
|
7062
|
+
* @public
|
|
7063
|
+
*/
|
|
7064
|
+
startingToken?: string | undefined;
|
|
7065
|
+
/**
|
|
7066
|
+
* <p>The maximum number of workflows to return in one page of results.</p>
|
|
7067
|
+
* @public
|
|
7068
|
+
*/
|
|
7069
|
+
maxResults?: number | undefined;
|
|
7070
|
+
}
|
|
7071
|
+
/**
|
|
7072
|
+
* <p>A list of workflow version items.</p>
|
|
7073
|
+
* @public
|
|
7074
|
+
*/
|
|
7075
|
+
export interface WorkflowVersionListItem {
|
|
7076
|
+
/**
|
|
7077
|
+
* <p>ARN of the workflow version.</p>
|
|
7078
|
+
* @public
|
|
7079
|
+
*/
|
|
7080
|
+
arn?: string | undefined;
|
|
7081
|
+
/**
|
|
7082
|
+
* <p>The workflow's ID.</p>
|
|
7083
|
+
* @public
|
|
7084
|
+
*/
|
|
7085
|
+
workflowId?: string | undefined;
|
|
7086
|
+
/**
|
|
7087
|
+
* <p>The name of the workflow version.</p>
|
|
7088
|
+
* @public
|
|
7089
|
+
*/
|
|
7090
|
+
versionName?: string | undefined;
|
|
7091
|
+
/**
|
|
7092
|
+
* <p>The description of the workflow version.</p>
|
|
7093
|
+
* @public
|
|
7094
|
+
*/
|
|
7095
|
+
description?: string | undefined;
|
|
7096
|
+
/**
|
|
7097
|
+
* <p>The status of the workflow version.</p>
|
|
7098
|
+
* @public
|
|
7099
|
+
*/
|
|
7100
|
+
status?: WorkflowStatus | undefined;
|
|
7101
|
+
/**
|
|
7102
|
+
* <p>The type of the workflow version.</p>
|
|
7103
|
+
* @public
|
|
7104
|
+
*/
|
|
7105
|
+
type?: WorkflowType | undefined;
|
|
7106
|
+
/**
|
|
7107
|
+
* <p>The digist of the workflow version.</p>
|
|
7108
|
+
* @public
|
|
7109
|
+
*/
|
|
7110
|
+
digest?: string | undefined;
|
|
7111
|
+
/**
|
|
7112
|
+
* <p>The creation time of the workflow version.</p>
|
|
7113
|
+
* @public
|
|
7114
|
+
*/
|
|
7115
|
+
creationTime?: Date | undefined;
|
|
7116
|
+
/**
|
|
7117
|
+
* <p>Metadata for the workflow version.</p>
|
|
7118
|
+
* @public
|
|
7119
|
+
*/
|
|
7120
|
+
metadata?: Record<string, string> | undefined;
|
|
7121
|
+
}
|
|
7122
|
+
/**
|
|
7123
|
+
* @public
|
|
7124
|
+
*/
|
|
7125
|
+
export interface ListWorkflowVersionsResponse {
|
|
7126
|
+
/**
|
|
7127
|
+
* <p>A list of workflow version items.</p>
|
|
7128
|
+
* @public
|
|
7129
|
+
*/
|
|
7130
|
+
items?: WorkflowVersionListItem[] | undefined;
|
|
7131
|
+
/**
|
|
7132
|
+
* <p>A pagination token that's included if more results are available.</p>
|
|
7133
|
+
* @public
|
|
7134
|
+
*/
|
|
7135
|
+
nextToken?: string | undefined;
|
|
7136
|
+
}
|
|
7006
7137
|
/**
|
|
7007
7138
|
* @public
|
|
7008
7139
|
*/
|
|
@@ -7028,7 +7159,7 @@ export interface PutS3AccessPolicyResponse {
|
|
|
7028
7159
|
*/
|
|
7029
7160
|
s3AccessPointArn?: string | undefined;
|
|
7030
7161
|
/**
|
|
7031
|
-
* <p>The
|
|
7162
|
+
* <p>The Amazon Web Services-generated Sequence Store or Reference Store ID.</p>
|
|
7032
7163
|
* @public
|
|
7033
7164
|
*/
|
|
7034
7165
|
storeId?: string | undefined;
|
|
@@ -7209,15 +7340,12 @@ export interface StartRunRequest {
|
|
|
7209
7340
|
*/
|
|
7210
7341
|
name?: string | undefined;
|
|
7211
7342
|
/**
|
|
7212
|
-
* <p>Identifier of the cache associated with this run. If you don't specify a cache ID, no task outputs are cached
|
|
7213
|
-
* for this run.</p>
|
|
7343
|
+
* <p>Identifier of the cache associated with this run. If you don't specify a cache ID, no task outputs are cached for this run.</p>
|
|
7214
7344
|
* @public
|
|
7215
7345
|
*/
|
|
7216
7346
|
cacheId?: string | undefined;
|
|
7217
7347
|
/**
|
|
7218
|
-
* <p>The cache behavior for the run. You specify this value if you want to override
|
|
7219
|
-
* the default behavior for the cache. You had set the default value when you created the cache.
|
|
7220
|
-
* For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/how-run-cache.html#run-cache-behavior">Run cache behavior</a> in the AWS HealthOmics User Guide.</p>
|
|
7348
|
+
* <p>The cache behavior for the run. You specify this value if you want to override the default behavior for the cache. You had set the default value when you created the cache. For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/how-run-cache.html#run-cache-behavior">Run cache behavior</a> in the Amazon Web Services HealthOmics User Guide.</p>
|
|
7221
7349
|
* @public
|
|
7222
7350
|
*/
|
|
7223
7351
|
cacheBehavior?: CacheBehavior | undefined;
|
|
@@ -7237,8 +7365,7 @@ export interface StartRunRequest {
|
|
|
7237
7365
|
*/
|
|
7238
7366
|
parameters?: __DocumentType | undefined;
|
|
7239
7367
|
/**
|
|
7240
|
-
* <p>
|
|
7241
|
-
* (the system ignores any value that you enter).</p>
|
|
7368
|
+
* <p>The static storage capacity (in gibibytes) for this run. This field is not required if the storage type is dynamic (the system ignores any value that you enter).</p>
|
|
7242
7369
|
* @public
|
|
7243
7370
|
*/
|
|
7244
7371
|
storageCapacity?: number | undefined;
|
|
@@ -7263,21 +7390,12 @@ export interface StartRunRequest {
|
|
|
7263
7390
|
*/
|
|
7264
7391
|
requestId?: string | undefined;
|
|
7265
7392
|
/**
|
|
7266
|
-
* <p>The retention mode for the run. The default value is RETAIN. </p>
|
|
7267
|
-
* <p>HealthOmics stores a fixed number of runs that are available to the console and API.
|
|
7268
|
-
* In the default mode (RETAIN), you need to remove runs manually when the number of run exceeds the maximum.
|
|
7269
|
-
* If you set the retention mode to <code>REMOVE</code>, HealthOmics automatically
|
|
7270
|
-
* removes runs (that have mode set to REMOVE) when the number of run exceeds the maximum.
|
|
7271
|
-
* All run logs are available in CloudWatch logs, if you need information about a run that is no longer available to the API.</p>
|
|
7272
|
-
* <p>For more information about retention mode, see <a href="https://docs.aws.amazon.com/omics/latest/dev/starting-a-run.html">Specifying run retention mode</a>
|
|
7273
|
-
* in the <i>AWS HealthOmics User Guide</i>.</p>
|
|
7393
|
+
* <p>The retention mode for the run. The default value is RETAIN. </p> <p>Amazon Web Services HealthOmics stores a fixed number of runs that are available to the console and API. In the default mode (RETAIN), you need to remove runs manually when the number of run exceeds the maximum. If you set the retention mode to <code>REMOVE</code>, Amazon Web Services HealthOmics automatically removes runs (that have mode set to REMOVE) when the number of run exceeds the maximum. All run logs are available in CloudWatch logs, if you need information about a run that is no longer available to the API.</p> <p>For more information about retention mode, see <a href="https://docs.aws.amazon.com/omics/latest/dev/starting-a-run.html">Specifying run retention mode</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
|
|
7274
7394
|
* @public
|
|
7275
7395
|
*/
|
|
7276
7396
|
retentionMode?: RunRetentionMode | undefined;
|
|
7277
7397
|
/**
|
|
7278
|
-
* <p>The
|
|
7279
|
-
* If you set the storage type to DYNAMIC, HealthOmics dynamically scales the storage up
|
|
7280
|
-
* or down, based on file system utilization.</p>
|
|
7398
|
+
* <p>The storage type for the run. By default, the run uses STATIC storage type, which allocates a fixed amount of storage. If you set the storage type to DYNAMIC, Amazon Web Services HealthOmics dynamically scales the storage up or down, based on file system utilization. For more information about static and dynamic storage, see <a href="https://docs.aws.amazon.com/omics/latest/dev/Using-workflows.html">Running workflows</a> in the <i>Amazon Web Services HealthOmics User Guide</i>.</p>
|
|
7281
7399
|
* @public
|
|
7282
7400
|
*/
|
|
7283
7401
|
storageType?: StorageType | undefined;
|
|
@@ -7286,6 +7404,11 @@ export interface StartRunRequest {
|
|
|
7286
7404
|
* @public
|
|
7287
7405
|
*/
|
|
7288
7406
|
workflowOwnerId?: string | undefined;
|
|
7407
|
+
/**
|
|
7408
|
+
* <p>The name of the workflow version.</p>
|
|
7409
|
+
* @public
|
|
7410
|
+
*/
|
|
7411
|
+
workflowVersionName?: string | undefined;
|
|
7289
7412
|
}
|
|
7290
7413
|
/**
|
|
7291
7414
|
* @public
|
|
@@ -7714,152 +7837,6 @@ export interface TagResourceRequest {
|
|
|
7714
7837
|
*/
|
|
7715
7838
|
export interface TagResourceResponse {
|
|
7716
7839
|
}
|
|
7717
|
-
/**
|
|
7718
|
-
* @public
|
|
7719
|
-
*/
|
|
7720
|
-
export interface UntagResourceRequest {
|
|
7721
|
-
/**
|
|
7722
|
-
* <p>The resource's ARN.</p>
|
|
7723
|
-
* @public
|
|
7724
|
-
*/
|
|
7725
|
-
resourceArn: string | undefined;
|
|
7726
|
-
/**
|
|
7727
|
-
* <p>Keys of tags to remove.</p>
|
|
7728
|
-
* @public
|
|
7729
|
-
*/
|
|
7730
|
-
tagKeys: string[] | undefined;
|
|
7731
|
-
}
|
|
7732
|
-
/**
|
|
7733
|
-
* @public
|
|
7734
|
-
*/
|
|
7735
|
-
export interface UntagResourceResponse {
|
|
7736
|
-
}
|
|
7737
|
-
/**
|
|
7738
|
-
* <p>A imported variant item's source.</p>
|
|
7739
|
-
* @public
|
|
7740
|
-
*/
|
|
7741
|
-
export interface VariantImportItemSource {
|
|
7742
|
-
/**
|
|
7743
|
-
* <p>The source file's location in Amazon S3.</p>
|
|
7744
|
-
* @public
|
|
7745
|
-
*/
|
|
7746
|
-
source: string | undefined;
|
|
7747
|
-
}
|
|
7748
|
-
/**
|
|
7749
|
-
* @public
|
|
7750
|
-
*/
|
|
7751
|
-
export interface StartVariantImportRequest {
|
|
7752
|
-
/**
|
|
7753
|
-
* <p>The destination variant store for the job.</p>
|
|
7754
|
-
* @public
|
|
7755
|
-
*/
|
|
7756
|
-
destinationName: string | undefined;
|
|
7757
|
-
/**
|
|
7758
|
-
* <p>A service role for the job.</p>
|
|
7759
|
-
* @public
|
|
7760
|
-
*/
|
|
7761
|
-
roleArn: string | undefined;
|
|
7762
|
-
/**
|
|
7763
|
-
* <p>Items to import.</p>
|
|
7764
|
-
* @public
|
|
7765
|
-
*/
|
|
7766
|
-
items: VariantImportItemSource[] | undefined;
|
|
7767
|
-
/**
|
|
7768
|
-
* <p>The job's left normalization setting.</p>
|
|
7769
|
-
* @public
|
|
7770
|
-
*/
|
|
7771
|
-
runLeftNormalization?: boolean | undefined;
|
|
7772
|
-
/**
|
|
7773
|
-
* <p>The annotation schema generated by the parsed annotation data.</p>
|
|
7774
|
-
* @public
|
|
7775
|
-
*/
|
|
7776
|
-
annotationFields?: Record<string, string> | undefined;
|
|
7777
|
-
}
|
|
7778
|
-
/**
|
|
7779
|
-
* @public
|
|
7780
|
-
*/
|
|
7781
|
-
export interface StartVariantImportResponse {
|
|
7782
|
-
/**
|
|
7783
|
-
* <p>The job's ID.</p>
|
|
7784
|
-
* @public
|
|
7785
|
-
*/
|
|
7786
|
-
jobId: string | undefined;
|
|
7787
|
-
}
|
|
7788
|
-
/**
|
|
7789
|
-
* @public
|
|
7790
|
-
*/
|
|
7791
|
-
export interface UpdateVariantStoreRequest {
|
|
7792
|
-
/**
|
|
7793
|
-
* <p>A name for the store.</p>
|
|
7794
|
-
* @public
|
|
7795
|
-
*/
|
|
7796
|
-
name: string | undefined;
|
|
7797
|
-
/**
|
|
7798
|
-
* <p>A description for the store.</p>
|
|
7799
|
-
* @public
|
|
7800
|
-
*/
|
|
7801
|
-
description?: string | undefined;
|
|
7802
|
-
}
|
|
7803
|
-
/**
|
|
7804
|
-
* @public
|
|
7805
|
-
*/
|
|
7806
|
-
export interface UpdateVariantStoreResponse {
|
|
7807
|
-
/**
|
|
7808
|
-
* <p>The store's ID.</p>
|
|
7809
|
-
* @public
|
|
7810
|
-
*/
|
|
7811
|
-
id: string | undefined;
|
|
7812
|
-
/**
|
|
7813
|
-
* <p>The store's genome reference.</p>
|
|
7814
|
-
* @public
|
|
7815
|
-
*/
|
|
7816
|
-
reference: ReferenceItem | undefined;
|
|
7817
|
-
/**
|
|
7818
|
-
* <p>The store's status.</p>
|
|
7819
|
-
* @public
|
|
7820
|
-
*/
|
|
7821
|
-
status: StoreStatus | undefined;
|
|
7822
|
-
/**
|
|
7823
|
-
* <p>The store's name.</p>
|
|
7824
|
-
* @public
|
|
7825
|
-
*/
|
|
7826
|
-
name: string | undefined;
|
|
7827
|
-
/**
|
|
7828
|
-
* <p>The store's description.</p>
|
|
7829
|
-
* @public
|
|
7830
|
-
*/
|
|
7831
|
-
description: string | undefined;
|
|
7832
|
-
/**
|
|
7833
|
-
* <p>When the store was created.</p>
|
|
7834
|
-
* @public
|
|
7835
|
-
*/
|
|
7836
|
-
creationTime: Date | undefined;
|
|
7837
|
-
/**
|
|
7838
|
-
* <p>When the store was updated.</p>
|
|
7839
|
-
* @public
|
|
7840
|
-
*/
|
|
7841
|
-
updateTime: Date | undefined;
|
|
7842
|
-
}
|
|
7843
|
-
/**
|
|
7844
|
-
* @public
|
|
7845
|
-
*/
|
|
7846
|
-
export interface UpdateWorkflowRequest {
|
|
7847
|
-
/**
|
|
7848
|
-
* <p>The workflow's ID.</p>
|
|
7849
|
-
* @public
|
|
7850
|
-
*/
|
|
7851
|
-
id: string | undefined;
|
|
7852
|
-
/**
|
|
7853
|
-
* <p>A name for the workflow.</p>
|
|
7854
|
-
* @public
|
|
7855
|
-
*/
|
|
7856
|
-
name?: string | undefined;
|
|
7857
|
-
/**
|
|
7858
|
-
* <p>A description for the workflow.</p>
|
|
7859
|
-
* @public
|
|
7860
|
-
*/
|
|
7861
|
-
description?: string | undefined;
|
|
7862
|
-
}
|
|
7863
7840
|
/**
|
|
7864
7841
|
* @internal
|
|
7865
7842
|
*/
|