@aws-sdk/client-omics 3.787.0 → 3.796.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +41 -2
- package/dist-cjs/index.js +413 -12
- package/dist-es/Omics.js +10 -0
- package/dist-es/commands/CreateWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/DeleteWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/GetWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/ListWorkflowVersionsCommand.js +22 -0
- package/dist-es/commands/UpdateWorkflowVersionCommand.js +22 -0
- package/dist-es/commands/index.js +5 -0
- package/dist-es/models/index.js +1 -0
- package/dist-es/models/models_0.js +4 -4
- package/dist-es/models/models_1.js +1 -0
- package/dist-es/pagination/ListWorkflowVersionsPaginator.js +4 -0
- package/dist-es/pagination/index.js +1 -0
- package/dist-es/protocols/Aws_restJson1.js +241 -0
- package/dist-es/waiters/index.js +1 -0
- package/dist-es/waiters/waitForWorkflowVersionActive.js +58 -0
- package/dist-types/Omics.d.ts +36 -2
- package/dist-types/OmicsClient.d.ts +8 -4
- package/dist-types/commands/AbortMultipartReadSetUploadCommand.d.ts +1 -3
- package/dist-types/commands/CompleteMultipartReadSetUploadCommand.d.ts +1 -3
- package/dist-types/commands/CreateAnnotationStoreVersionCommand.d.ts +1 -3
- package/dist-types/commands/CreateMultipartReadSetUploadCommand.d.ts +1 -3
- package/dist-types/commands/CreateRunCacheCommand.d.ts +1 -5
- package/dist-types/commands/CreateShareCommand.d.ts +1 -14
- package/dist-types/commands/CreateWorkflowCommand.d.ts +3 -1
- package/dist-types/commands/CreateWorkflowVersionCommand.d.ts +123 -0
- package/dist-types/commands/DeleteAnnotationStoreVersionsCommand.d.ts +1 -3
- package/dist-types/commands/DeleteRunCacheCommand.d.ts +1 -6
- package/dist-types/commands/DeleteS3AccessPolicyCommand.d.ts +1 -3
- package/dist-types/commands/DeleteShareCommand.d.ts +1 -2
- package/dist-types/commands/DeleteWorkflowVersionCommand.d.ts +95 -0
- package/dist-types/commands/GetAnnotationStoreVersionCommand.d.ts +1 -3
- package/dist-types/commands/GetRunCacheCommand.d.ts +1 -2
- package/dist-types/commands/GetRunCommand.d.ts +3 -6
- package/dist-types/commands/GetS3AccessPolicyCommand.d.ts +1 -3
- package/dist-types/commands/GetWorkflowCommand.d.ts +3 -2
- package/dist-types/commands/GetWorkflowVersionCommand.d.ts +130 -0
- package/dist-types/commands/ListAnnotationStoreVersionsCommand.d.ts +1 -3
- package/dist-types/commands/ListMultipartReadSetUploadsCommand.d.ts +2 -5
- package/dist-types/commands/ListReadSetUploadPartsCommand.d.ts +1 -3
- package/dist-types/commands/ListRunsCommand.d.ts +2 -5
- package/dist-types/commands/ListSharesCommand.d.ts +1 -2
- package/dist-types/commands/ListWorkflowVersionsCommand.d.ts +115 -0
- package/dist-types/commands/PutS3AccessPolicyCommand.d.ts +1 -3
- package/dist-types/commands/StartReadSetActivationJobCommand.d.ts +1 -2
- package/dist-types/commands/StartRunCommand.d.ts +2 -12
- package/dist-types/commands/StartVariantImportJobCommand.d.ts +1 -1
- package/dist-types/commands/UntagResourceCommand.d.ts +1 -1
- package/dist-types/commands/UpdateAnnotationStoreVersionCommand.d.ts +1 -3
- package/dist-types/commands/UpdateVariantStoreCommand.d.ts +1 -1
- package/dist-types/commands/UpdateWorkflowCommand.d.ts +4 -2
- package/dist-types/commands/UpdateWorkflowVersionCommand.d.ts +98 -0
- package/dist-types/commands/UploadReadSetPartCommand.d.ts +2 -5
- package/dist-types/commands/index.d.ts +5 -0
- package/dist-types/index.d.ts +1 -2
- package/dist-types/models/index.d.ts +1 -0
- package/dist-types/models/models_0.d.ts +555 -578
- package/dist-types/models/models_1.d.ts +187 -0
- package/dist-types/pagination/ListWorkflowVersionsPaginator.d.ts +7 -0
- package/dist-types/pagination/index.d.ts +1 -0
- package/dist-types/protocols/Aws_restJson1.d.ts +45 -0
- package/dist-types/ts3.4/Omics.d.ts +85 -0
- package/dist-types/ts3.4/OmicsClient.d.ts +30 -0
- package/dist-types/ts3.4/commands/CreateWorkflowVersionCommand.d.ts +51 -0
- package/dist-types/ts3.4/commands/DeleteWorkflowVersionCommand.d.ts +46 -0
- package/dist-types/ts3.4/commands/GetWorkflowVersionCommand.d.ts +51 -0
- package/dist-types/ts3.4/commands/ListWorkflowVersionsCommand.d.ts +51 -0
- package/dist-types/ts3.4/commands/StartVariantImportJobCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UntagResourceCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UpdateVariantStoreCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UpdateWorkflowCommand.d.ts +1 -1
- package/dist-types/ts3.4/commands/UpdateWorkflowVersionCommand.d.ts +46 -0
- package/dist-types/ts3.4/commands/index.d.ts +5 -0
- package/dist-types/ts3.4/models/index.d.ts +1 -0
- package/dist-types/ts3.4/models/models_0.d.ts +92 -41
- package/dist-types/ts3.4/models/models_1.d.ts +46 -0
- package/dist-types/ts3.4/pagination/ListWorkflowVersionsPaginator.d.ts +11 -0
- package/dist-types/ts3.4/pagination/index.d.ts +1 -0
- package/dist-types/ts3.4/protocols/Aws_restJson1.d.ts +60 -0
- package/dist-types/ts3.4/waiters/index.d.ts +1 -0
- package/dist-types/ts3.4/waiters/waitForWorkflowVersionActive.d.ts +11 -0
- package/dist-types/waiters/index.d.ts +1 -0
- package/dist-types/waiters/waitForWorkflowVersionActive.d.ts +14 -0
- package/package.json +5 -5
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@@ -0,0 +1,58 @@
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import { checkExceptions, createWaiter, WaiterState } from "@smithy/util-waiter";
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import { GetWorkflowVersionCommand } from "../commands/GetWorkflowVersionCommand";
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const checkState = async (client, input) => {
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let reason;
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try {
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const result = await client.send(new GetWorkflowVersionCommand(input));
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reason = result;
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try {
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const returnComparator = () => {
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return result.status;
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};
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if (returnComparator() === "ACTIVE") {
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return { state: WaiterState.SUCCESS, reason };
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}
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}
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catch (e) { }
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try {
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const returnComparator = () => {
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return result.status;
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};
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if (returnComparator() === "CREATING") {
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return { state: WaiterState.RETRY, reason };
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}
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}
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catch (e) { }
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try {
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const returnComparator = () => {
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return result.status;
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};
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if (returnComparator() === "UPDATING") {
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return { state: WaiterState.RETRY, reason };
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}
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}
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catch (e) { }
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try {
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const returnComparator = () => {
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return result.status;
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};
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if (returnComparator() === "FAILED") {
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return { state: WaiterState.FAILURE, reason };
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}
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}
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catch (e) { }
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}
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catch (exception) {
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reason = exception;
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}
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return { state: WaiterState.RETRY, reason };
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};
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export const waitForWorkflowVersionActive = async (params, input) => {
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const serviceDefaults = { minDelay: 3, maxDelay: 30 };
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return createWaiter({ ...serviceDefaults, ...params }, input, checkState);
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};
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export const waitUntilWorkflowVersionActive = async (params, input) => {
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const serviceDefaults = { minDelay: 3, maxDelay: 30 };
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const result = await createWaiter({ ...serviceDefaults, ...params }, input, checkState);
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return checkExceptions(result);
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};
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package/dist-types/Omics.d.ts
CHANGED
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@@ -16,6 +16,7 @@ import { CreateSequenceStoreCommandInput, CreateSequenceStoreCommandOutput } fro
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import { CreateShareCommandInput, CreateShareCommandOutput } from "./commands/CreateShareCommand";
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import { CreateVariantStoreCommandInput, CreateVariantStoreCommandOutput } from "./commands/CreateVariantStoreCommand";
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import { CreateWorkflowCommandInput, CreateWorkflowCommandOutput } from "./commands/CreateWorkflowCommand";
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import { CreateWorkflowVersionCommandInput, CreateWorkflowVersionCommandOutput } from "./commands/CreateWorkflowVersionCommand";
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import { DeleteAnnotationStoreCommandInput, DeleteAnnotationStoreCommandOutput } from "./commands/DeleteAnnotationStoreCommand";
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import { DeleteAnnotationStoreVersionsCommandInput, DeleteAnnotationStoreVersionsCommandOutput } from "./commands/DeleteAnnotationStoreVersionsCommand";
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import { DeleteReferenceCommandInput, DeleteReferenceCommandOutput } from "./commands/DeleteReferenceCommand";
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@@ -28,6 +29,7 @@ import { DeleteSequenceStoreCommandInput, DeleteSequenceStoreCommandOutput } fro
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import { DeleteShareCommandInput, DeleteShareCommandOutput } from "./commands/DeleteShareCommand";
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import { DeleteVariantStoreCommandInput, DeleteVariantStoreCommandOutput } from "./commands/DeleteVariantStoreCommand";
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import { DeleteWorkflowCommandInput, DeleteWorkflowCommandOutput } from "./commands/DeleteWorkflowCommand";
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import { DeleteWorkflowVersionCommandInput, DeleteWorkflowVersionCommandOutput } from "./commands/DeleteWorkflowVersionCommand";
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import { GetAnnotationImportJobCommandInput, GetAnnotationImportJobCommandOutput } from "./commands/GetAnnotationImportJobCommand";
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import { GetAnnotationStoreCommandInput, GetAnnotationStoreCommandOutput } from "./commands/GetAnnotationStoreCommand";
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import { GetAnnotationStoreVersionCommandInput, GetAnnotationStoreVersionCommandOutput } from "./commands/GetAnnotationStoreVersionCommand";
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@@ -50,6 +52,7 @@ import { GetShareCommandInput, GetShareCommandOutput } from "./commands/GetShare
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import { GetVariantImportJobCommandInput, GetVariantImportJobCommandOutput } from "./commands/GetVariantImportJobCommand";
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import { GetVariantStoreCommandInput, GetVariantStoreCommandOutput } from "./commands/GetVariantStoreCommand";
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import { GetWorkflowCommandInput, GetWorkflowCommandOutput } from "./commands/GetWorkflowCommand";
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import { GetWorkflowVersionCommandInput, GetWorkflowVersionCommandOutput } from "./commands/GetWorkflowVersionCommand";
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import { ListAnnotationImportJobsCommandInput, ListAnnotationImportJobsCommandOutput } from "./commands/ListAnnotationImportJobsCommand";
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import { ListAnnotationStoresCommandInput, ListAnnotationStoresCommandOutput } from "./commands/ListAnnotationStoresCommand";
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import { ListAnnotationStoreVersionsCommandInput, ListAnnotationStoreVersionsCommandOutput } from "./commands/ListAnnotationStoreVersionsCommand";
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@@ -72,6 +75,7 @@ import { ListTagsForResourceCommandInput, ListTagsForResourceCommandOutput } fro
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import { ListVariantImportJobsCommandInput, ListVariantImportJobsCommandOutput } from "./commands/ListVariantImportJobsCommand";
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import { ListVariantStoresCommandInput, ListVariantStoresCommandOutput } from "./commands/ListVariantStoresCommand";
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import { ListWorkflowsCommandInput, ListWorkflowsCommandOutput } from "./commands/ListWorkflowsCommand";
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import { ListWorkflowVersionsCommandInput, ListWorkflowVersionsCommandOutput } from "./commands/ListWorkflowVersionsCommand";
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import { PutS3AccessPolicyCommandInput, PutS3AccessPolicyCommandOutput } from "./commands/PutS3AccessPolicyCommand";
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import { StartAnnotationImportJobCommandInput, StartAnnotationImportJobCommandOutput } from "./commands/StartAnnotationImportJobCommand";
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import { StartReadSetActivationJobCommandInput, StartReadSetActivationJobCommandOutput } from "./commands/StartReadSetActivationJobCommand";
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import { UpdateSequenceStoreCommandInput, UpdateSequenceStoreCommandOutput } from "./commands/UpdateSequenceStoreCommand";
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import { UpdateVariantStoreCommandInput, UpdateVariantStoreCommandOutput } from "./commands/UpdateVariantStoreCommand";
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import { UpdateWorkflowCommandInput, UpdateWorkflowCommandOutput } from "./commands/UpdateWorkflowCommand";
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import { UpdateWorkflowVersionCommandInput, UpdateWorkflowVersionCommandOutput } from "./commands/UpdateWorkflowVersionCommand";
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import { UploadReadSetPartCommandInput, UploadReadSetPartCommandOutput } from "./commands/UploadReadSetPartCommand";
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import { OmicsClient } from "./OmicsClient";
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export interface Omics {
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createWorkflow(args: CreateWorkflowCommandInput, options?: __HttpHandlerOptions): Promise<CreateWorkflowCommandOutput>;
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createWorkflow(args: CreateWorkflowCommandInput, cb: (err: any, data?: CreateWorkflowCommandOutput) => void): void;
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createWorkflow(args: CreateWorkflowCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: CreateWorkflowCommandOutput) => void): void;
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/**
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* @see {@link CreateWorkflowVersionCommand}
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*/
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createWorkflowVersion(args: CreateWorkflowVersionCommandInput, options?: __HttpHandlerOptions): Promise<CreateWorkflowVersionCommandOutput>;
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createWorkflowVersion(args: CreateWorkflowVersionCommandInput, cb: (err: any, data?: CreateWorkflowVersionCommandOutput) => void): void;
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createWorkflowVersion(args: CreateWorkflowVersionCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: CreateWorkflowVersionCommandOutput) => void): void;
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/**
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*/
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deleteWorkflow(args: DeleteWorkflowCommandInput, options?: __HttpHandlerOptions): Promise<DeleteWorkflowCommandOutput>;
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deleteWorkflow(args: DeleteWorkflowCommandInput, cb: (err: any, data?: DeleteWorkflowCommandOutput) => void): void;
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deleteWorkflow(args: DeleteWorkflowCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: DeleteWorkflowCommandOutput) => void): void;
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/**
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*/
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deleteWorkflowVersion(args: DeleteWorkflowVersionCommandInput, options?: __HttpHandlerOptions): Promise<DeleteWorkflowVersionCommandOutput>;
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deleteWorkflowVersion(args: DeleteWorkflowVersionCommandInput, cb: (err: any, data?: DeleteWorkflowVersionCommandOutput) => void): void;
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deleteWorkflowVersion(args: DeleteWorkflowVersionCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: DeleteWorkflowVersionCommandOutput) => void): void;
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/**
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*/
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getWorkflow(args: GetWorkflowCommandInput, options?: __HttpHandlerOptions): Promise<GetWorkflowCommandOutput>;
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getWorkflow(args: GetWorkflowCommandInput, cb: (err: any, data?: GetWorkflowCommandOutput) => void): void;
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getWorkflow(args: GetWorkflowCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: GetWorkflowCommandOutput) => void): void;
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/**
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* @see {@link GetWorkflowVersionCommand}
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*/
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getWorkflowVersion(args: GetWorkflowVersionCommandInput, options?: __HttpHandlerOptions): Promise<GetWorkflowVersionCommandOutput>;
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getWorkflowVersion(args: GetWorkflowVersionCommandInput, cb: (err: any, data?: GetWorkflowVersionCommandOutput) => void): void;
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getWorkflowVersion(args: GetWorkflowVersionCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: GetWorkflowVersionCommandOutput) => void): void;
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/**
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listWorkflows(args: ListWorkflowsCommandInput, options?: __HttpHandlerOptions): Promise<ListWorkflowsCommandOutput>;
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listWorkflows(args: ListWorkflowsCommandInput, cb: (err: any, data?: ListWorkflowsCommandOutput) => void): void;
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listWorkflows(args: ListWorkflowsCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: ListWorkflowsCommandOutput) => void): void;
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/**
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* @see {@link ListWorkflowVersionsCommand}
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*/
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listWorkflowVersions(args: ListWorkflowVersionsCommandInput, options?: __HttpHandlerOptions): Promise<ListWorkflowVersionsCommandOutput>;
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listWorkflowVersions(args: ListWorkflowVersionsCommandInput, cb: (err: any, data?: ListWorkflowVersionsCommandOutput) => void): void;
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listWorkflowVersions(args: ListWorkflowVersionsCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: ListWorkflowVersionsCommandOutput) => void): void;
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/**
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updateWorkflow(args: UpdateWorkflowCommandInput, options?: __HttpHandlerOptions): Promise<UpdateWorkflowCommandOutput>;
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updateWorkflow(args: UpdateWorkflowCommandInput, cb: (err: any, data?: UpdateWorkflowCommandOutput) => void): void;
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updateWorkflow(args: UpdateWorkflowCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: UpdateWorkflowCommandOutput) => void): void;
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/**
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*/
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updateWorkflowVersion(args: UpdateWorkflowVersionCommandInput, options?: __HttpHandlerOptions): Promise<UpdateWorkflowVersionCommandOutput>;
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updateWorkflowVersion(args: UpdateWorkflowVersionCommandInput, cb: (err: any, data?: UpdateWorkflowVersionCommandOutput) => void): void;
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updateWorkflowVersion(args: UpdateWorkflowVersionCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: UpdateWorkflowVersionCommandOutput) => void): void;
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/**
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uploadReadSetPart(args: UploadReadSetPartCommandInput, options: __HttpHandlerOptions, cb: (err: any, data?: UploadReadSetPartCommandOutput) => void): void;
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}
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/**
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* <p>This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the
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* <i>AWS HealthOmics User Guide</i>.</p>
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* <p>This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the <i>AWS HealthOmics User Guide</i>.</p>
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* @public
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*/
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export declare class Omics extends OmicsClient implements Omics {
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import { CreateShareCommandInput, CreateShareCommandOutput } from "./commands/CreateShareCommand";
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import { CreateVariantStoreCommandInput, CreateVariantStoreCommandOutput } from "./commands/CreateVariantStoreCommand";
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import { CreateWorkflowCommandInput, CreateWorkflowCommandOutput } from "./commands/CreateWorkflowCommand";
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import { CreateWorkflowVersionCommandInput, CreateWorkflowVersionCommandOutput } from "./commands/CreateWorkflowVersionCommand";
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import { DeleteAnnotationStoreCommandInput, DeleteAnnotationStoreCommandOutput } from "./commands/DeleteAnnotationStoreCommand";
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import { DeleteAnnotationStoreVersionsCommandInput, DeleteAnnotationStoreVersionsCommandOutput } from "./commands/DeleteAnnotationStoreVersionsCommand";
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export type ServiceInputTypes = AbortMultipartReadSetUploadCommandInput | AcceptShareCommandInput | BatchDeleteReadSetCommandInput | CancelAnnotationImportJobCommandInput | CancelRunCommandInput | CancelVariantImportJobCommandInput | CompleteMultipartReadSetUploadCommandInput | CreateAnnotationStoreCommandInput | CreateAnnotationStoreVersionCommandInput | CreateMultipartReadSetUploadCommandInput | CreateReferenceStoreCommandInput | CreateRunCacheCommandInput | CreateRunGroupCommandInput | CreateSequenceStoreCommandInput | CreateShareCommandInput | CreateVariantStoreCommandInput | CreateWorkflowCommandInput | DeleteAnnotationStoreCommandInput | DeleteAnnotationStoreVersionsCommandInput | DeleteReferenceCommandInput | DeleteReferenceStoreCommandInput | DeleteRunCacheCommandInput | DeleteRunCommandInput | DeleteRunGroupCommandInput | DeleteS3AccessPolicyCommandInput | DeleteSequenceStoreCommandInput | DeleteShareCommandInput | DeleteVariantStoreCommandInput | DeleteWorkflowCommandInput | GetAnnotationImportJobCommandInput | GetAnnotationStoreCommandInput | GetAnnotationStoreVersionCommandInput | GetReadSetActivationJobCommandInput | GetReadSetCommandInput | GetReadSetExportJobCommandInput | GetReadSetImportJobCommandInput | GetReadSetMetadataCommandInput | GetReferenceCommandInput | GetReferenceImportJobCommandInput | GetReferenceMetadataCommandInput | GetReferenceStoreCommandInput | GetRunCacheCommandInput | GetRunCommandInput | GetRunGroupCommandInput | GetRunTaskCommandInput | GetS3AccessPolicyCommandInput | GetSequenceStoreCommandInput | GetShareCommandInput | GetVariantImportJobCommandInput | GetVariantStoreCommandInput | GetWorkflowCommandInput | ListAnnotationImportJobsCommandInput | ListAnnotationStoreVersionsCommandInput | ListAnnotationStoresCommandInput | ListMultipartReadSetUploadsCommandInput | ListReadSetActivationJobsCommandInput | ListReadSetExportJobsCommandInput | ListReadSetImportJobsCommandInput | ListReadSetUploadPartsCommandInput | ListReadSetsCommandInput | ListReferenceImportJobsCommandInput | ListReferenceStoresCommandInput | ListReferencesCommandInput | ListRunCachesCommandInput | ListRunGroupsCommandInput | ListRunTasksCommandInput | ListRunsCommandInput | ListSequenceStoresCommandInput | ListSharesCommandInput | ListTagsForResourceCommandInput | ListVariantImportJobsCommandInput | ListVariantStoresCommandInput | ListWorkflowsCommandInput | PutS3AccessPolicyCommandInput | StartAnnotationImportJobCommandInput | StartReadSetActivationJobCommandInput | StartReadSetExportJobCommandInput | StartReadSetImportJobCommandInput | StartReferenceImportJobCommandInput | StartRunCommandInput | StartVariantImportJobCommandInput | TagResourceCommandInput | UntagResourceCommandInput | UpdateAnnotationStoreCommandInput | UpdateAnnotationStoreVersionCommandInput | UpdateRunCacheCommandInput | UpdateRunGroupCommandInput | UpdateSequenceStoreCommandInput | UpdateVariantStoreCommandInput | UpdateWorkflowCommandInput | UploadReadSetPartCommandInput;
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export type ServiceInputTypes = AbortMultipartReadSetUploadCommandInput | AcceptShareCommandInput | BatchDeleteReadSetCommandInput | CancelAnnotationImportJobCommandInput | CancelRunCommandInput | CancelVariantImportJobCommandInput | CompleteMultipartReadSetUploadCommandInput | CreateAnnotationStoreCommandInput | CreateAnnotationStoreVersionCommandInput | CreateMultipartReadSetUploadCommandInput | CreateReferenceStoreCommandInput | CreateRunCacheCommandInput | CreateRunGroupCommandInput | CreateSequenceStoreCommandInput | CreateShareCommandInput | CreateVariantStoreCommandInput | CreateWorkflowCommandInput | CreateWorkflowVersionCommandInput | DeleteAnnotationStoreCommandInput | DeleteAnnotationStoreVersionsCommandInput | DeleteReferenceCommandInput | DeleteReferenceStoreCommandInput | DeleteRunCacheCommandInput | DeleteRunCommandInput | DeleteRunGroupCommandInput | DeleteS3AccessPolicyCommandInput | DeleteSequenceStoreCommandInput | DeleteShareCommandInput | DeleteVariantStoreCommandInput | DeleteWorkflowCommandInput | DeleteWorkflowVersionCommandInput | GetAnnotationImportJobCommandInput | GetAnnotationStoreCommandInput | GetAnnotationStoreVersionCommandInput | GetReadSetActivationJobCommandInput | GetReadSetCommandInput | GetReadSetExportJobCommandInput | GetReadSetImportJobCommandInput | GetReadSetMetadataCommandInput | GetReferenceCommandInput | GetReferenceImportJobCommandInput | GetReferenceMetadataCommandInput | GetReferenceStoreCommandInput | GetRunCacheCommandInput | GetRunCommandInput | GetRunGroupCommandInput | GetRunTaskCommandInput | GetS3AccessPolicyCommandInput | GetSequenceStoreCommandInput | GetShareCommandInput | GetVariantImportJobCommandInput | GetVariantStoreCommandInput | GetWorkflowCommandInput | GetWorkflowVersionCommandInput | ListAnnotationImportJobsCommandInput | ListAnnotationStoreVersionsCommandInput | ListAnnotationStoresCommandInput | ListMultipartReadSetUploadsCommandInput | ListReadSetActivationJobsCommandInput | ListReadSetExportJobsCommandInput | ListReadSetImportJobsCommandInput | ListReadSetUploadPartsCommandInput | ListReadSetsCommandInput | ListReferenceImportJobsCommandInput | ListReferenceStoresCommandInput | ListReferencesCommandInput | ListRunCachesCommandInput | ListRunGroupsCommandInput | ListRunTasksCommandInput | ListRunsCommandInput | ListSequenceStoresCommandInput | ListSharesCommandInput | ListTagsForResourceCommandInput | ListVariantImportJobsCommandInput | ListVariantStoresCommandInput | ListWorkflowVersionsCommandInput | ListWorkflowsCommandInput | PutS3AccessPolicyCommandInput | StartAnnotationImportJobCommandInput | StartReadSetActivationJobCommandInput | StartReadSetExportJobCommandInput | StartReadSetImportJobCommandInput | StartReferenceImportJobCommandInput | StartRunCommandInput | StartVariantImportJobCommandInput | TagResourceCommandInput | UntagResourceCommandInput | UpdateAnnotationStoreCommandInput | UpdateAnnotationStoreVersionCommandInput | UpdateRunCacheCommandInput | UpdateRunGroupCommandInput | UpdateSequenceStoreCommandInput | UpdateVariantStoreCommandInput | UpdateWorkflowCommandInput | UpdateWorkflowVersionCommandInput | UploadReadSetPartCommandInput;
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export type ServiceOutputTypes = AbortMultipartReadSetUploadCommandOutput | AcceptShareCommandOutput | BatchDeleteReadSetCommandOutput | CancelAnnotationImportJobCommandOutput | CancelRunCommandOutput | CancelVariantImportJobCommandOutput | CompleteMultipartReadSetUploadCommandOutput | CreateAnnotationStoreCommandOutput | CreateAnnotationStoreVersionCommandOutput | CreateMultipartReadSetUploadCommandOutput | CreateReferenceStoreCommandOutput | CreateRunCacheCommandOutput | CreateRunGroupCommandOutput | CreateSequenceStoreCommandOutput | CreateShareCommandOutput | CreateVariantStoreCommandOutput | CreateWorkflowCommandOutput | DeleteAnnotationStoreCommandOutput | DeleteAnnotationStoreVersionsCommandOutput | DeleteReferenceCommandOutput | DeleteReferenceStoreCommandOutput | DeleteRunCacheCommandOutput | DeleteRunCommandOutput | DeleteRunGroupCommandOutput | DeleteS3AccessPolicyCommandOutput | DeleteSequenceStoreCommandOutput | DeleteShareCommandOutput | DeleteVariantStoreCommandOutput | DeleteWorkflowCommandOutput | GetAnnotationImportJobCommandOutput | GetAnnotationStoreCommandOutput | GetAnnotationStoreVersionCommandOutput | GetReadSetActivationJobCommandOutput | GetReadSetCommandOutput | GetReadSetExportJobCommandOutput | GetReadSetImportJobCommandOutput | GetReadSetMetadataCommandOutput | GetReferenceCommandOutput | GetReferenceImportJobCommandOutput | GetReferenceMetadataCommandOutput | GetReferenceStoreCommandOutput | GetRunCacheCommandOutput | GetRunCommandOutput | GetRunGroupCommandOutput | GetRunTaskCommandOutput | GetS3AccessPolicyCommandOutput | GetSequenceStoreCommandOutput | GetShareCommandOutput | GetVariantImportJobCommandOutput | GetVariantStoreCommandOutput | GetWorkflowCommandOutput | ListAnnotationImportJobsCommandOutput | ListAnnotationStoreVersionsCommandOutput | ListAnnotationStoresCommandOutput | ListMultipartReadSetUploadsCommandOutput | ListReadSetActivationJobsCommandOutput | ListReadSetExportJobsCommandOutput | ListReadSetImportJobsCommandOutput | ListReadSetUploadPartsCommandOutput | ListReadSetsCommandOutput | ListReferenceImportJobsCommandOutput | ListReferenceStoresCommandOutput | ListReferencesCommandOutput | ListRunCachesCommandOutput | ListRunGroupsCommandOutput | ListRunTasksCommandOutput | ListRunsCommandOutput | ListSequenceStoresCommandOutput | ListSharesCommandOutput | ListTagsForResourceCommandOutput | ListVariantImportJobsCommandOutput | ListVariantStoresCommandOutput | ListWorkflowsCommandOutput | PutS3AccessPolicyCommandOutput | StartAnnotationImportJobCommandOutput | StartReadSetActivationJobCommandOutput | StartReadSetExportJobCommandOutput | StartReadSetImportJobCommandOutput | StartReferenceImportJobCommandOutput | StartRunCommandOutput | StartVariantImportJobCommandOutput | TagResourceCommandOutput | UntagResourceCommandOutput | UpdateAnnotationStoreCommandOutput | UpdateAnnotationStoreVersionCommandOutput | UpdateRunCacheCommandOutput | UpdateRunGroupCommandOutput | UpdateSequenceStoreCommandOutput | UpdateVariantStoreCommandOutput | UpdateWorkflowCommandOutput | UploadReadSetPartCommandOutput;
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export type ServiceOutputTypes = AbortMultipartReadSetUploadCommandOutput | AcceptShareCommandOutput | BatchDeleteReadSetCommandOutput | CancelAnnotationImportJobCommandOutput | CancelRunCommandOutput | CancelVariantImportJobCommandOutput | CompleteMultipartReadSetUploadCommandOutput | CreateAnnotationStoreCommandOutput | CreateAnnotationStoreVersionCommandOutput | CreateMultipartReadSetUploadCommandOutput | CreateReferenceStoreCommandOutput | CreateRunCacheCommandOutput | CreateRunGroupCommandOutput | CreateSequenceStoreCommandOutput | CreateShareCommandOutput | CreateVariantStoreCommandOutput | CreateWorkflowCommandOutput | CreateWorkflowVersionCommandOutput | DeleteAnnotationStoreCommandOutput | DeleteAnnotationStoreVersionsCommandOutput | DeleteReferenceCommandOutput | DeleteReferenceStoreCommandOutput | DeleteRunCacheCommandOutput | DeleteRunCommandOutput | DeleteRunGroupCommandOutput | DeleteS3AccessPolicyCommandOutput | DeleteSequenceStoreCommandOutput | DeleteShareCommandOutput | DeleteVariantStoreCommandOutput | DeleteWorkflowCommandOutput | DeleteWorkflowVersionCommandOutput | GetAnnotationImportJobCommandOutput | GetAnnotationStoreCommandOutput | GetAnnotationStoreVersionCommandOutput | GetReadSetActivationJobCommandOutput | GetReadSetCommandOutput | GetReadSetExportJobCommandOutput | GetReadSetImportJobCommandOutput | GetReadSetMetadataCommandOutput | GetReferenceCommandOutput | GetReferenceImportJobCommandOutput | GetReferenceMetadataCommandOutput | GetReferenceStoreCommandOutput | GetRunCacheCommandOutput | GetRunCommandOutput | GetRunGroupCommandOutput | GetRunTaskCommandOutput | GetS3AccessPolicyCommandOutput | GetSequenceStoreCommandOutput | GetShareCommandOutput | GetVariantImportJobCommandOutput | GetVariantStoreCommandOutput | GetWorkflowCommandOutput | GetWorkflowVersionCommandOutput | ListAnnotationImportJobsCommandOutput | ListAnnotationStoreVersionsCommandOutput | ListAnnotationStoresCommandOutput | ListMultipartReadSetUploadsCommandOutput | ListReadSetActivationJobsCommandOutput | ListReadSetExportJobsCommandOutput | ListReadSetImportJobsCommandOutput | ListReadSetUploadPartsCommandOutput | ListReadSetsCommandOutput | ListReferenceImportJobsCommandOutput | ListReferenceStoresCommandOutput | ListReferencesCommandOutput | ListRunCachesCommandOutput | ListRunGroupsCommandOutput | ListRunTasksCommandOutput | ListRunsCommandOutput | ListSequenceStoresCommandOutput | ListSharesCommandOutput | ListTagsForResourceCommandOutput | ListVariantImportJobsCommandOutput | ListVariantStoresCommandOutput | ListWorkflowVersionsCommandOutput | ListWorkflowsCommandOutput | PutS3AccessPolicyCommandOutput | StartAnnotationImportJobCommandOutput | StartReadSetActivationJobCommandOutput | StartReadSetExportJobCommandOutput | StartReadSetImportJobCommandOutput | StartReferenceImportJobCommandOutput | StartRunCommandOutput | StartVariantImportJobCommandOutput | TagResourceCommandOutput | UntagResourceCommandOutput | UpdateAnnotationStoreCommandOutput | UpdateAnnotationStoreVersionCommandOutput | UpdateRunCacheCommandOutput | UpdateRunGroupCommandOutput | UpdateSequenceStoreCommandOutput | UpdateVariantStoreCommandOutput | UpdateWorkflowCommandOutput | UpdateWorkflowVersionCommandOutput | UploadReadSetPartCommandOutput;
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* <p>This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the
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* <p>This is the <i>AWS HealthOmics API Reference</i>. For an introduction to the service, see <a href="https://docs.aws.amazon.com/omics/latest/dev/">What is AWS HealthOmics?</a> in the <i>AWS HealthOmics User Guide</i>.</p>
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* <p>You can create a run cache to save the task outputs from completed tasks in a run for a private workflow. Subsequent runs use the task outputs from the cache, rather than computing the task outputs again. You specify an Amazon S3 location where Amazon Web Services HealthOmics saves the cached data. This data must be immediately accessible (not in an archived state).</p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-cache-create.html">Creating a run cache</a> in the Amazon Web Services HealthOmics User Guide.</p>
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* <p>Creates a cross-account shared resource. The resource owner makes an offer to share the resource with the principal subscriber (an AWS user with a different account than the resource owner).</p> <p>The following resources support cross-account sharing:</p> <ul> <li> <p>HealthOmics variant stores</p> </li> <li> <p>HealthOmics annotation stores</p> </li> <li> <p>Private workflows</p> </li> </ul>
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* <p>Creates a private workflow.Private workflows depend on a variety of resources that you create and configure before creating the workflow:</p> <ul> <li> <p> <i>Input data</i>: Input data for the workflow, stored in an S3 bucket or a Amazon Web Services HealthOmics sequence store. </p> </li> <li> <p> <i>Workflow definition files</i>: Define your workflow in one or more workflow definition files, written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements.</p> </li> <li> <p> <i>Parameter template files</i>: Define run parameters using a parameter template file (written in JSON). </p> </li> <li> <p> <i>ECR container images</i>: Create one or more container images for the workflow. Store the images in a private ECR repository.</p> </li> <li> <p>(Optional) <i>Sentieon licenses</i>: Request a Sentieon license if you plan to use Sentieon software in a private workflow.</p> </li> </ul> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/creating-private-workflows.html">Creating or updating a private workflow in Amazon Web Services HealthOmics</a> in the Amazon Web Services HealthOmics User Guide.</p>
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/**
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6
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* @public
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*/
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export type { __MetadataBearer };
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export { $Command };
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/**
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* @public
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*
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* The input for {@link CreateWorkflowVersionCommand}.
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*/
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export interface CreateWorkflowVersionCommandInput extends CreateWorkflowVersionRequest {
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}
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/**
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* @public
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*
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* The output of {@link CreateWorkflowVersionCommand}.
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*/
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export interface CreateWorkflowVersionCommandOutput extends CreateWorkflowVersionResponse, __MetadataBearer {
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}
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declare const CreateWorkflowVersionCommand_base: {
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new (input: CreateWorkflowVersionCommandInput): import("@smithy/smithy-client").CommandImpl<CreateWorkflowVersionCommandInput, CreateWorkflowVersionCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
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new (__0_0: CreateWorkflowVersionCommandInput): import("@smithy/smithy-client").CommandImpl<CreateWorkflowVersionCommandInput, CreateWorkflowVersionCommandOutput, OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes>;
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getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
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};
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/**
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* <p>Creates a new workflow version for the workflow that you specify with the <code>workflowId</code> parameter.</p> <p>When you create a new version of a workflow, you need to specify the configuration for the new version. It doesn't inherit any configuration values from the workflow.</p> <p>Provide a version name that is unique for this workflow. You cannot change the name after HealthOmics creates the version.</p> <note> <p>Don’t include any personally identifiable information (PII) in the version name. Version names appear in the workflow version ARN.</p> </note> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html">Workflow versioning in Amazon Web Services HealthOmics</a> in the Amazon Web Services HealthOmics User Guide.</p>
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* @example
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* Use a bare-bones client and the command you need to make an API call.
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* ```javascript
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* import { OmicsClient, CreateWorkflowVersionCommand } from "@aws-sdk/client-omics"; // ES Modules import
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* // const { OmicsClient, CreateWorkflowVersionCommand } = require("@aws-sdk/client-omics"); // CommonJS import
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* const client = new OmicsClient(config);
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* const input = { // CreateWorkflowVersionRequest
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* workflowId: "STRING_VALUE", // required
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* versionName: "STRING_VALUE", // required
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* definitionZip: new Uint8Array(), // e.g. Buffer.from("") or new TextEncoder().encode("")
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* definitionUri: "STRING_VALUE",
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* accelerators: "STRING_VALUE",
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* description: "STRING_VALUE",
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* engine: "STRING_VALUE",
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* main: "STRING_VALUE",
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* parameterTemplate: { // WorkflowParameterTemplate
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* "<keys>": { // WorkflowParameter
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* description: "STRING_VALUE",
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* optional: true || false,
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* },
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* },
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* requestId: "STRING_VALUE", // required
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* storageType: "STRING_VALUE",
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* storageCapacity: Number("int"),
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* tags: { // TagMap
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* "<keys>": "STRING_VALUE",
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* },
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* workflowBucketOwnerId: "STRING_VALUE",
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* };
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* const command = new CreateWorkflowVersionCommand(input);
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* const response = await client.send(command);
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* // { // CreateWorkflowVersionResponse
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* // arn: "STRING_VALUE",
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* // workflowId: "STRING_VALUE",
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* // versionName: "STRING_VALUE",
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* // status: "STRING_VALUE",
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* // tags: { // TagMap
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* // "<keys>": "STRING_VALUE",
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* // },
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* // uuid: "STRING_VALUE",
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* // };
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*
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+
* ```
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*
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* @param CreateWorkflowVersionCommandInput - {@link CreateWorkflowVersionCommandInput}
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* @returns {@link CreateWorkflowVersionCommandOutput}
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* @see {@link CreateWorkflowVersionCommandInput} for command's `input` shape.
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* @see {@link CreateWorkflowVersionCommandOutput} for command's `response` shape.
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* @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
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*
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* @throws {@link AccessDeniedException} (client fault)
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* <p>You do not have sufficient access to perform this action.</p>
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*
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* @throws {@link ConflictException} (client fault)
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+
* <p>The request cannot be applied to the target resource in its current state.</p>
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86
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+
*
|
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+
* @throws {@link InternalServerException} (server fault)
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88
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+
* <p>An unexpected error occurred. Try the request again.</p>
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+
*
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90
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+
* @throws {@link RequestTimeoutException} (client fault)
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91
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+
* <p>The request timed out.</p>
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92
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+
*
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93
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+
* @throws {@link ResourceNotFoundException} (client fault)
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+
* <p>The target resource was not found in the current Region.</p>
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+
*
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+
* @throws {@link ServiceQuotaExceededException} (client fault)
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+
* <p>The request exceeds a service quota.</p>
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+
*
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+
* @throws {@link ThrottlingException} (client fault)
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+
* <p>The request was denied due to request throttling.</p>
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+
*
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102
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+
* @throws {@link ValidationException} (client fault)
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103
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+
* <p>The input fails to satisfy the constraints specified by an AWS service.</p>
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+
*
|
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105
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+
* @throws {@link OmicsServiceException}
|
|
106
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+
* <p>Base exception class for all service exceptions from Omics service.</p>
|
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+
*
|
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108
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+
*
|
|
109
|
+
* @public
|
|
110
|
+
*/
|
|
111
|
+
export declare class CreateWorkflowVersionCommand extends CreateWorkflowVersionCommand_base {
|
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112
|
+
/** @internal type navigation helper, not in runtime. */
|
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113
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+
protected static __types: {
|
|
114
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+
api: {
|
|
115
|
+
input: CreateWorkflowVersionRequest;
|
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116
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+
output: CreateWorkflowVersionResponse;
|
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117
|
+
};
|
|
118
|
+
sdk: {
|
|
119
|
+
input: CreateWorkflowVersionCommandInput;
|
|
120
|
+
output: CreateWorkflowVersionCommandOutput;
|
|
121
|
+
};
|
|
122
|
+
};
|
|
123
|
+
}
|
|
@@ -27,9 +27,7 @@ declare const DeleteAnnotationStoreVersionsCommand_base: {
|
|
|
27
27
|
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
28
|
};
|
|
29
29
|
/**
|
|
30
|
-
* <p>
|
|
31
|
-
* Deletes one or multiple versions of an annotation store.
|
|
32
|
-
* </p>
|
|
30
|
+
* <p> Deletes one or multiple versions of an annotation store. </p>
|
|
33
31
|
* @example
|
|
34
32
|
* Use a bare-bones client and the command you need to make an API call.
|
|
35
33
|
* ```javascript
|
|
@@ -27,12 +27,7 @@ declare const DeleteRunCacheCommand_base: {
|
|
|
27
27
|
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
28
|
};
|
|
29
29
|
/**
|
|
30
|
-
* <p>Delete a run cache. This action removes the cache metadata stored in the service account,
|
|
31
|
-
* but doesn't delete the data in Amazon S3.
|
|
32
|
-
* You can access the cache data in Amazon S3, for inspection or to troubleshoot issues.
|
|
33
|
-
* You can remove old cache data using standard S3 <code>Delete</code> operations.
|
|
34
|
-
* </p>
|
|
35
|
-
* <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-cache-delete.html">Deleting a run cache</a> in the AWS HealthOmics User Guide.</p>
|
|
30
|
+
* <p>Delete a run cache. This action removes the cache metadata stored in the service account, but doesn't delete the data in Amazon S3. You can access the cache data in Amazon S3, for inspection or to troubleshoot issues. You can remove old cache data using standard S3 <code>Delete</code> operations. </p> <p>For more information, see <a href="https://docs.aws.amazon.com/omics/latest/dev/workflow-cache-delete.html">Deleting a run cache</a> in the Amazon Web Services HealthOmics User Guide.</p>
|
|
36
31
|
* @example
|
|
37
32
|
* Use a bare-bones client and the command you need to make an API call.
|
|
38
33
|
* ```javascript
|
|
@@ -56,9 +56,7 @@ declare const DeleteS3AccessPolicyCommand_base: {
|
|
|
56
56
|
* <p>An unexpected error occurred. Try the request again.</p>
|
|
57
57
|
*
|
|
58
58
|
* @throws {@link NotSupportedOperationException} (client fault)
|
|
59
|
-
* <p>
|
|
60
|
-
* The operation is not supported by Amazon Omics, or the API does not exist.
|
|
61
|
-
* </p>
|
|
59
|
+
* <p> The operation is not supported by Amazon Omics, or the API does not exist. </p>
|
|
62
60
|
*
|
|
63
61
|
* @throws {@link RequestTimeoutException} (client fault)
|
|
64
62
|
* <p>The request timed out.</p>
|
|
@@ -27,8 +27,7 @@ declare const DeleteShareCommand_base: {
|
|
|
27
27
|
getEndpointParameterInstructions(): import("@smithy/middleware-endpoint").EndpointParameterInstructions;
|
|
28
28
|
};
|
|
29
29
|
/**
|
|
30
|
-
* <p>Deletes a resource share. If you are the resource owner, the subscriber will no longer have
|
|
31
|
-
* access to the shared resource. If you are the subscriber, this operation deletes your access to the share.</p>
|
|
30
|
+
* <p>Deletes a resource share. If you are the resource owner, the subscriber will no longer have access to the shared resource. If you are the subscriber, this operation deletes your access to the share.</p>
|
|
32
31
|
* @example
|
|
33
32
|
* Use a bare-bones client and the command you need to make an API call.
|
|
34
33
|
* ```javascript
|