@aws-sdk/client-omics 3.388.0 → 3.391.0

package/dist-es/commands/UpdateAnnotationStoreVersionCommand.js

@@ -0,0 +1,42 @@
+import { getEndpointPlugin } from "@smithy/middleware-endpoint";
+import { getSerdePlugin } from "@smithy/middleware-serde";
+import { Command as $Command } from "@smithy/smithy-client";
+import { de_UpdateAnnotationStoreVersionCommand, se_UpdateAnnotationStoreVersionCommand, } from "../protocols/Aws_restJson1";
+export { $Command };
+export class UpdateAnnotationStoreVersionCommand extends $Command {
+    static getEndpointParameterInstructions() {
+        return {
+            UseFIPS: { type: "builtInParams", name: "useFipsEndpoint" },
+            Endpoint: { type: "builtInParams", name: "endpoint" },
+            Region: { type: "builtInParams", name: "region" },
+            UseDualStack: { type: "builtInParams", name: "useDualstackEndpoint" },
+        };
+    }
+    constructor(input) {
+        super();
+        this.input = input;
+    }
+    resolveMiddleware(clientStack, configuration, options) {
+        this.middlewareStack.use(getSerdePlugin(configuration, this.serialize, this.deserialize));
+        this.middlewareStack.use(getEndpointPlugin(configuration, UpdateAnnotationStoreVersionCommand.getEndpointParameterInstructions()));
+        const stack = clientStack.concat(this.middlewareStack);
+        const { logger } = configuration;
+        const clientName = "OmicsClient";
+        const commandName = "UpdateAnnotationStoreVersionCommand";
+        const handlerExecutionContext = {
+            logger,
+            clientName,
+            commandName,
+            inputFilterSensitiveLog: (_) => _,
+            outputFilterSensitiveLog: (_) => _,
+        };
+        const { requestHandler } = configuration;
+        return stack.resolve((request) => requestHandler.handle(request.request, options || {}), handlerExecutionContext);
+    }
+    serialize(input, context) {
+        return se_UpdateAnnotationStoreVersionCommand(input, context);
+    }
+    deserialize(output, context) {
+        return de_UpdateAnnotationStoreVersionCommand(output, context);
+    }
+}

package/dist-es/commands/index.js

@@ -1,26 +1,32 @@
 export * from "./AbortMultipartReadSetUploadCommand";
+export * from "./AcceptShareCommand";
 export * from "./BatchDeleteReadSetCommand";
 export * from "./CancelAnnotationImportJobCommand";
 export * from "./CancelRunCommand";
 export * from "./CancelVariantImportJobCommand";
 export * from "./CompleteMultipartReadSetUploadCommand";
 export * from "./CreateAnnotationStoreCommand";
+export * from "./CreateAnnotationStoreVersionCommand";
 export * from "./CreateMultipartReadSetUploadCommand";
 export * from "./CreateReferenceStoreCommand";
 export * from "./CreateRunGroupCommand";
 export * from "./CreateSequenceStoreCommand";
+export * from "./CreateShareCommand";
 export * from "./CreateVariantStoreCommand";
 export * from "./CreateWorkflowCommand";
 export * from "./DeleteAnnotationStoreCommand";
+export * from "./DeleteAnnotationStoreVersionsCommand";
 export * from "./DeleteReferenceCommand";
 export * from "./DeleteReferenceStoreCommand";
 export * from "./DeleteRunCommand";
 export * from "./DeleteRunGroupCommand";
 export * from "./DeleteSequenceStoreCommand";
+export * from "./DeleteShareCommand";
 export * from "./DeleteVariantStoreCommand";
 export * from "./DeleteWorkflowCommand";
 export * from "./GetAnnotationImportJobCommand";
 export * from "./GetAnnotationStoreCommand";
+export * from "./GetAnnotationStoreVersionCommand";
 export * from "./GetReadSetActivationJobCommand";
 export * from "./GetReadSetCommand";
 export * from "./GetReadSetExportJobCommand";
@@ -34,10 +40,12 @@ export * from "./GetRunCommand";
 export * from "./GetRunGroupCommand";
 export * from "./GetRunTaskCommand";
 export * from "./GetSequenceStoreCommand";
+export * from "./GetShareCommand";
 export * from "./GetVariantImportJobCommand";
 export * from "./GetVariantStoreCommand";
 export * from "./GetWorkflowCommand";
 export * from "./ListAnnotationImportJobsCommand";
+export * from "./ListAnnotationStoreVersionsCommand";
 export * from "./ListAnnotationStoresCommand";
 export * from "./ListMultipartReadSetUploadsCommand";
 export * from "./ListReadSetActivationJobsCommand";
@@ -52,6 +60,7 @@ export * from "./ListRunGroupsCommand";
 export * from "./ListRunTasksCommand";
 export * from "./ListRunsCommand";
 export * from "./ListSequenceStoresCommand";
+export * from "./ListSharesCommand";
 export * from "./ListTagsForResourceCommand";
 export * from "./ListVariantImportJobsCommand";
 export * from "./ListVariantStoresCommand";
@@ -66,6 +75,7 @@ export * from "./StartVariantImportJobCommand";
 export * from "./TagResourceCommand";
 export * from "./UntagResourceCommand";
 export * from "./UpdateAnnotationStoreCommand";
+export * from "./UpdateAnnotationStoreVersionCommand";
 export * from "./UpdateRunGroupCommand";
 export * from "./UpdateVariantStoreCommand";
 export * from "./UpdateWorkflowCommand";

package/dist-es/models/models_0.js

@@ -102,6 +102,26 @@ export class ValidationException extends __BaseException {
 export const Accelerators = {
     GPU: "GPU",
 };
+export const ShareStatus = {
+    ACTIVATING: "ACTIVATING",
+    ACTIVE: "ACTIVE",
+    DELETED: "DELETED",
+    DELETING: "DELETING",
+    FAILED: "FAILED",
+    PENDING: "PENDING",
+};
+export class ConflictException extends __BaseException {
+    constructor(opts) {
+        super({
+            name: "ConflictException",
+            $fault: "client",
+            ...opts,
+        });
+        this.name = "ConflictException";
+        this.$fault = "client";
+        Object.setPrototypeOf(this, ConflictException.prototype);
+    }
+}
 export const ReadSetActivationJobStatus = {
     CANCELLED: "CANCELLED",
     CANCELLING: "CANCELLING",
@@ -135,18 +155,6 @@ export var FormatOptions;
         return visitor._(value.$unknown[0], value.$unknown[1]);
     };
 })(FormatOptions || (FormatOptions = {}));
-export class ConflictException extends __BaseException {
-    constructor(opts) {
-        super({
-            name: "ConflictException",
-            $fault: "client",
-            ...opts,
-        });
-        this.name = "ConflictException";
-        this.$fault = "client";
-        Object.setPrototypeOf(this, ConflictException.prototype);
-    }
-}
 export var ReferenceItem;
 (function (ReferenceItem) {
     ReferenceItem.visit = (value, visitor) => {
@@ -203,6 +211,21 @@ export const StoreStatus = {
     FAILED: "FAILED",
     UPDATING: "UPDATING",
 };
+export var VersionOptions;
+(function (VersionOptions) {
+    VersionOptions.visit = (value, visitor) => {
+        if (value.tsvVersionOptions !== undefined)
+            return visitor.tsvVersionOptions(value.tsvVersionOptions);
+        return visitor._(value.$unknown[0], value.$unknown[1]);
+    };
+})(VersionOptions || (VersionOptions = {}));
+export const VersionStatus = {
+    ACTIVE: "ACTIVE",
+    CREATING: "CREATING",
+    DELETING: "DELETING",
+    FAILED: "FAILED",
+    UPDATING: "UPDATING",
+};
 export const ReadSetPartSource = {
     SOURCE1: "SOURCE1",
     SOURCE2: "SOURCE2",
@@ -345,6 +368,10 @@ export const TaskStatus = {
 export const WorkflowExport = {
     DEFINITION: "DEFINITION",
 };
+export const ResourceOwner = {
+    OTHER: "OTHER",
+    SELF: "SELF",
+};
 export const GetReadSetResponseFilterSensitiveLog = (obj) => ({
     ...obj,
 });

package/dist-es/pagination/ListAnnotationStoreVersionsPaginator.js

@@ -0,0 +1,25 @@
+import { ListAnnotationStoreVersionsCommand, } from "../commands/ListAnnotationStoreVersionsCommand";
+import { OmicsClient } from "../OmicsClient";
+const makePagedClientRequest = async (client, input, ...args) => {
+    return await client.send(new ListAnnotationStoreVersionsCommand(input), ...args);
+};
+export async function* paginateListAnnotationStoreVersions(config, input, ...additionalArguments) {
+    let token = config.startingToken || undefined;
+    let hasNext = true;
+    let page;
+    while (hasNext) {
+        input.nextToken = token;
+        input["maxResults"] = config.pageSize;
+        if (config.client instanceof OmicsClient) {
+            page = await makePagedClientRequest(config.client, input, ...additionalArguments);
+        }
+        else {
+            throw new Error("Invalid client, expected Omics | OmicsClient");
+        }
+        yield page;
+        const prevToken = token;
+        token = page.nextToken;
+        hasNext = !!(token && (!config.stopOnSameToken || token !== prevToken));
+    }
+    return undefined;
+}

package/dist-es/pagination/ListSharesPaginator.js

@@ -0,0 +1,25 @@
+import { ListSharesCommand } from "../commands/ListSharesCommand";
+import { OmicsClient } from "../OmicsClient";
+const makePagedClientRequest = async (client, input, ...args) => {
+    return await client.send(new ListSharesCommand(input), ...args);
+};
+export async function* paginateListShares(config, input, ...additionalArguments) {
+    let token = config.startingToken || undefined;
+    let hasNext = true;
+    let page;
+    while (hasNext) {
+        input.nextToken = token;
+        input["maxResults"] = config.pageSize;
+        if (config.client instanceof OmicsClient) {
+            page = await makePagedClientRequest(config.client, input, ...additionalArguments);
+        }
+        else {
+            throw new Error("Invalid client, expected Omics | OmicsClient");
+        }
+        yield page;
+        const prevToken = token;
+        token = page.nextToken;
+        hasNext = !!(token && (!config.stopOnSameToken || token !== prevToken));
+    }
+    return undefined;
+}

package/dist-es/pagination/index.js

@@ -1,5 +1,6 @@
 export * from "./Interfaces";
 export * from "./ListAnnotationImportJobsPaginator";
+export * from "./ListAnnotationStoreVersionsPaginator";
 export * from "./ListAnnotationStoresPaginator";
 export * from "./ListMultipartReadSetUploadsPaginator";
 export * from "./ListReadSetActivationJobsPaginator";
@@ -14,6 +15,7 @@ export * from "./ListRunGroupsPaginator";
 export * from "./ListRunTasksPaginator";
 export * from "./ListRunsPaginator";
 export * from "./ListSequenceStoresPaginator";
+export * from "./ListSharesPaginator";
 export * from "./ListVariantImportJobsPaginator";
 export * from "./ListVariantStoresPaginator";
 export * from "./ListWorkflowsPaginator";