@aws-sdk/client-omics 3.388.0 → 3.391.0

package/dist-cjs/commands/ListAnnotationStoreVersionsCommand.js

@@ -0,0 +1,46 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ListAnnotationStoreVersionsCommand = exports.$Command = void 0;
+const middleware_endpoint_1 = require("@smithy/middleware-endpoint");
+const middleware_serde_1 = require("@smithy/middleware-serde");
+const smithy_client_1 = require("@smithy/smithy-client");
+Object.defineProperty(exports, "$Command", { enumerable: true, get: function () { return smithy_client_1.Command; } });
+const Aws_restJson1_1 = require("../protocols/Aws_restJson1");
+class ListAnnotationStoreVersionsCommand extends smithy_client_1.Command {
+    static getEndpointParameterInstructions() {
+        return {
+            UseFIPS: { type: "builtInParams", name: "useFipsEndpoint" },
+            Endpoint: { type: "builtInParams", name: "endpoint" },
+            Region: { type: "builtInParams", name: "region" },
+            UseDualStack: { type: "builtInParams", name: "useDualstackEndpoint" },
+        };
+    }
+    constructor(input) {
+        super();
+        this.input = input;
+    }
+    resolveMiddleware(clientStack, configuration, options) {
+        this.middlewareStack.use((0, middleware_serde_1.getSerdePlugin)(configuration, this.serialize, this.deserialize));
+        this.middlewareStack.use((0, middleware_endpoint_1.getEndpointPlugin)(configuration, ListAnnotationStoreVersionsCommand.getEndpointParameterInstructions()));
+        const stack = clientStack.concat(this.middlewareStack);
+        const { logger } = configuration;
+        const clientName = "OmicsClient";
+        const commandName = "ListAnnotationStoreVersionsCommand";
+        const handlerExecutionContext = {
+            logger,
+            clientName,
+            commandName,
+            inputFilterSensitiveLog: (_) => _,
+            outputFilterSensitiveLog: (_) => _,
+        };
+        const { requestHandler } = configuration;
+        return stack.resolve((request) => requestHandler.handle(request.request, options || {}), handlerExecutionContext);
+    }
+    serialize(input, context) {
+        return (0, Aws_restJson1_1.se_ListAnnotationStoreVersionsCommand)(input, context);
+    }
+    deserialize(output, context) {
+        return (0, Aws_restJson1_1.de_ListAnnotationStoreVersionsCommand)(output, context);
+    }
+}
+exports.ListAnnotationStoreVersionsCommand = ListAnnotationStoreVersionsCommand;

package/dist-cjs/commands/ListSharesCommand.js

@@ -0,0 +1,46 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ListSharesCommand = exports.$Command = void 0;
+const middleware_endpoint_1 = require("@smithy/middleware-endpoint");
+const middleware_serde_1 = require("@smithy/middleware-serde");
+const smithy_client_1 = require("@smithy/smithy-client");
+Object.defineProperty(exports, "$Command", { enumerable: true, get: function () { return smithy_client_1.Command; } });
+const Aws_restJson1_1 = require("../protocols/Aws_restJson1");
+class ListSharesCommand extends smithy_client_1.Command {
+    static getEndpointParameterInstructions() {
+        return {
+            UseFIPS: { type: "builtInParams", name: "useFipsEndpoint" },
+            Endpoint: { type: "builtInParams", name: "endpoint" },
+            Region: { type: "builtInParams", name: "region" },
+            UseDualStack: { type: "builtInParams", name: "useDualstackEndpoint" },
+        };
+    }
+    constructor(input) {
+        super();
+        this.input = input;
+    }
+    resolveMiddleware(clientStack, configuration, options) {
+        this.middlewareStack.use((0, middleware_serde_1.getSerdePlugin)(configuration, this.serialize, this.deserialize));
+        this.middlewareStack.use((0, middleware_endpoint_1.getEndpointPlugin)(configuration, ListSharesCommand.getEndpointParameterInstructions()));
+        const stack = clientStack.concat(this.middlewareStack);
+        const { logger } = configuration;
+        const clientName = "OmicsClient";
+        const commandName = "ListSharesCommand";
+        const handlerExecutionContext = {
+            logger,
+            clientName,
+            commandName,
+            inputFilterSensitiveLog: (_) => _,
+            outputFilterSensitiveLog: (_) => _,
+        };
+        const { requestHandler } = configuration;
+        return stack.resolve((request) => requestHandler.handle(request.request, options || {}), handlerExecutionContext);
+    }
+    serialize(input, context) {
+        return (0, Aws_restJson1_1.se_ListSharesCommand)(input, context);
+    }
+    deserialize(output, context) {
+        return (0, Aws_restJson1_1.de_ListSharesCommand)(output, context);
+    }
+}
+exports.ListSharesCommand = ListSharesCommand;

package/dist-cjs/commands/UpdateAnnotationStoreVersionCommand.js

@@ -0,0 +1,46 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UpdateAnnotationStoreVersionCommand = exports.$Command = void 0;
+const middleware_endpoint_1 = require("@smithy/middleware-endpoint");
+const middleware_serde_1 = require("@smithy/middleware-serde");
+const smithy_client_1 = require("@smithy/smithy-client");
+Object.defineProperty(exports, "$Command", { enumerable: true, get: function () { return smithy_client_1.Command; } });
+const Aws_restJson1_1 = require("../protocols/Aws_restJson1");
+class UpdateAnnotationStoreVersionCommand extends smithy_client_1.Command {
+    static getEndpointParameterInstructions() {
+        return {
+            UseFIPS: { type: "builtInParams", name: "useFipsEndpoint" },
+            Endpoint: { type: "builtInParams", name: "endpoint" },
+            Region: { type: "builtInParams", name: "region" },
+            UseDualStack: { type: "builtInParams", name: "useDualstackEndpoint" },
+        };
+    }
+    constructor(input) {
+        super();
+        this.input = input;
+    }
+    resolveMiddleware(clientStack, configuration, options) {
+        this.middlewareStack.use((0, middleware_serde_1.getSerdePlugin)(configuration, this.serialize, this.deserialize));
+        this.middlewareStack.use((0, middleware_endpoint_1.getEndpointPlugin)(configuration, UpdateAnnotationStoreVersionCommand.getEndpointParameterInstructions()));
+        const stack = clientStack.concat(this.middlewareStack);
+        const { logger } = configuration;
+        const clientName = "OmicsClient";
+        const commandName = "UpdateAnnotationStoreVersionCommand";
+        const handlerExecutionContext = {
+            logger,
+            clientName,
+            commandName,
+            inputFilterSensitiveLog: (_) => _,
+            outputFilterSensitiveLog: (_) => _,
+        };
+        const { requestHandler } = configuration;
+        return stack.resolve((request) => requestHandler.handle(request.request, options || {}), handlerExecutionContext);
+    }
+    serialize(input, context) {
+        return (0, Aws_restJson1_1.se_UpdateAnnotationStoreVersionCommand)(input, context);
+    }
+    deserialize(output, context) {
+        return (0, Aws_restJson1_1.de_UpdateAnnotationStoreVersionCommand)(output, context);
+    }
+}
+exports.UpdateAnnotationStoreVersionCommand = UpdateAnnotationStoreVersionCommand;

package/dist-cjs/commands/index.js

@@ -2,28 +2,34 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 const tslib_1 = require("tslib");
 tslib_1.__exportStar(require("./AbortMultipartReadSetUploadCommand"), exports);
+tslib_1.__exportStar(require("./AcceptShareCommand"), exports);
 tslib_1.__exportStar(require("./BatchDeleteReadSetCommand"), exports);
 tslib_1.__exportStar(require("./CancelAnnotationImportJobCommand"), exports);
 tslib_1.__exportStar(require("./CancelRunCommand"), exports);
 tslib_1.__exportStar(require("./CancelVariantImportJobCommand"), exports);
 tslib_1.__exportStar(require("./CompleteMultipartReadSetUploadCommand"), exports);
 tslib_1.__exportStar(require("./CreateAnnotationStoreCommand"), exports);
+tslib_1.__exportStar(require("./CreateAnnotationStoreVersionCommand"), exports);
 tslib_1.__exportStar(require("./CreateMultipartReadSetUploadCommand"), exports);
 tslib_1.__exportStar(require("./CreateReferenceStoreCommand"), exports);
 tslib_1.__exportStar(require("./CreateRunGroupCommand"), exports);
 tslib_1.__exportStar(require("./CreateSequenceStoreCommand"), exports);
+tslib_1.__exportStar(require("./CreateShareCommand"), exports);
 tslib_1.__exportStar(require("./CreateVariantStoreCommand"), exports);
 tslib_1.__exportStar(require("./CreateWorkflowCommand"), exports);
 tslib_1.__exportStar(require("./DeleteAnnotationStoreCommand"), exports);
+tslib_1.__exportStar(require("./DeleteAnnotationStoreVersionsCommand"), exports);
 tslib_1.__exportStar(require("./DeleteReferenceCommand"), exports);
 tslib_1.__exportStar(require("./DeleteReferenceStoreCommand"), exports);
 tslib_1.__exportStar(require("./DeleteRunCommand"), exports);
 tslib_1.__exportStar(require("./DeleteRunGroupCommand"), exports);
 tslib_1.__exportStar(require("./DeleteSequenceStoreCommand"), exports);
+tslib_1.__exportStar(require("./DeleteShareCommand"), exports);
 tslib_1.__exportStar(require("./DeleteVariantStoreCommand"), exports);
 tslib_1.__exportStar(require("./DeleteWorkflowCommand"), exports);
 tslib_1.__exportStar(require("./GetAnnotationImportJobCommand"), exports);
 tslib_1.__exportStar(require("./GetAnnotationStoreCommand"), exports);
+tslib_1.__exportStar(require("./GetAnnotationStoreVersionCommand"), exports);
 tslib_1.__exportStar(require("./GetReadSetActivationJobCommand"), exports);
 tslib_1.__exportStar(require("./GetReadSetCommand"), exports);
 tslib_1.__exportStar(require("./GetReadSetExportJobCommand"), exports);
@@ -37,10 +43,12 @@ tslib_1.__exportStar(require("./GetRunCommand"), exports);
 tslib_1.__exportStar(require("./GetRunGroupCommand"), exports);
 tslib_1.__exportStar(require("./GetRunTaskCommand"), exports);
 tslib_1.__exportStar(require("./GetSequenceStoreCommand"), exports);
+tslib_1.__exportStar(require("./GetShareCommand"), exports);
 tslib_1.__exportStar(require("./GetVariantImportJobCommand"), exports);
 tslib_1.__exportStar(require("./GetVariantStoreCommand"), exports);
 tslib_1.__exportStar(require("./GetWorkflowCommand"), exports);
 tslib_1.__exportStar(require("./ListAnnotationImportJobsCommand"), exports);
+tslib_1.__exportStar(require("./ListAnnotationStoreVersionsCommand"), exports);
 tslib_1.__exportStar(require("./ListAnnotationStoresCommand"), exports);
 tslib_1.__exportStar(require("./ListMultipartReadSetUploadsCommand"), exports);
 tslib_1.__exportStar(require("./ListReadSetActivationJobsCommand"), exports);
@@ -55,6 +63,7 @@ tslib_1.__exportStar(require("./ListRunGroupsCommand"), exports);
 tslib_1.__exportStar(require("./ListRunTasksCommand"), exports);
 tslib_1.__exportStar(require("./ListRunsCommand"), exports);
 tslib_1.__exportStar(require("./ListSequenceStoresCommand"), exports);
+tslib_1.__exportStar(require("./ListSharesCommand"), exports);
 tslib_1.__exportStar(require("./ListTagsForResourceCommand"), exports);
 tslib_1.__exportStar(require("./ListVariantImportJobsCommand"), exports);
 tslib_1.__exportStar(require("./ListVariantStoresCommand"), exports);
@@ -69,6 +78,7 @@ tslib_1.__exportStar(require("./StartVariantImportJobCommand"), exports);
 tslib_1.__exportStar(require("./TagResourceCommand"), exports);
 tslib_1.__exportStar(require("./UntagResourceCommand"), exports);
 tslib_1.__exportStar(require("./UpdateAnnotationStoreCommand"), exports);
+tslib_1.__exportStar(require("./UpdateAnnotationStoreVersionCommand"), exports);
 tslib_1.__exportStar(require("./UpdateRunGroupCommand"), exports);
 tslib_1.__exportStar(require("./UpdateVariantStoreCommand"), exports);
 tslib_1.__exportStar(require("./UpdateWorkflowCommand"), exports);

package/dist-cjs/models/models_0.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.UploadReadSetPartRequestFilterSensitiveLog = exports.GetReferenceResponseFilterSensitiveLog = exports.GetReadSetResponseFilterSensitiveLog = exports.WorkflowExport = exports.TaskStatus = exports.WorkflowType = exports.RunStatus = exports.RunLogLevel = exports.RunExport = exports.ReferenceStatus = exports.ReferenceImportJobStatus = exports.ReferenceImportJobItemStatus = exports.ReferenceFile = exports.ReadSetStatus = exports.ReadSetImportJobStatus = exports.ReadSetImportJobItemStatus = exports.RangeNotSatisfiableException = exports.ReadSetFile = exports.ReadSetExportJobStatus = exports.ReadSetExportJobItemStatus = exports.CreationType = exports.WorkflowStatus = exports.WorkflowEngine = exports.FileType = exports.ReadSetPartSource = exports.StoreStatus = exports.StoreOptions = exports.SchemaValueType = exports.FormatToHeaderKey = exports.AnnotationType = exports.StoreFormat = exports.EncryptionType = exports.ReferenceItem = exports.ConflictException = exports.FormatOptions = exports.JobStatus = exports.ReadSetActivationJobItemStatus = exports.ReadSetActivationJobStatus = exports.Accelerators = exports.ValidationException = exports.ThrottlingException = exports.ServiceQuotaExceededException = exports.ResourceNotFoundException = exports.RequestTimeoutException = exports.NotSupportedOperationException = exports.InternalServerException = exports.AccessDeniedException = void 0;
+exports.GetReferenceResponseFilterSensitiveLog = exports.GetReadSetResponseFilterSensitiveLog = exports.ResourceOwner = exports.WorkflowExport = exports.TaskStatus = exports.WorkflowType = exports.RunStatus = exports.RunLogLevel = exports.RunExport = exports.ReferenceStatus = exports.ReferenceImportJobStatus = exports.ReferenceImportJobItemStatus = exports.ReferenceFile = exports.ReadSetStatus = exports.ReadSetImportJobStatus = exports.ReadSetImportJobItemStatus = exports.RangeNotSatisfiableException = exports.ReadSetFile = exports.ReadSetExportJobStatus = exports.ReadSetExportJobItemStatus = exports.CreationType = exports.WorkflowStatus = exports.WorkflowEngine = exports.FileType = exports.ReadSetPartSource = exports.VersionStatus = exports.VersionOptions = exports.StoreStatus = exports.StoreOptions = exports.SchemaValueType = exports.FormatToHeaderKey = exports.AnnotationType = exports.StoreFormat = exports.EncryptionType = exports.ReferenceItem = exports.FormatOptions = exports.JobStatus = exports.ReadSetActivationJobItemStatus = exports.ReadSetActivationJobStatus = exports.ConflictException = exports.ShareStatus = exports.Accelerators = exports.ValidationException = exports.ThrottlingException = exports.ServiceQuotaExceededException = exports.ResourceNotFoundException = exports.RequestTimeoutException = exports.NotSupportedOperationException = exports.InternalServerException = exports.AccessDeniedException = void 0;
+exports.UploadReadSetPartRequestFilterSensitiveLog = void 0;
 const OmicsServiceException_1 = require("./OmicsServiceException");
 class AccessDeniedException extends OmicsServiceException_1.OmicsServiceException {
     constructor(opts) {
@@ -113,6 +114,27 @@ exports.ValidationException = ValidationException;
 exports.Accelerators = {
     GPU: "GPU",
 };
+exports.ShareStatus = {
+    ACTIVATING: "ACTIVATING",
+    ACTIVE: "ACTIVE",
+    DELETED: "DELETED",
+    DELETING: "DELETING",
+    FAILED: "FAILED",
+    PENDING: "PENDING",
+};
+class ConflictException extends OmicsServiceException_1.OmicsServiceException {
+    constructor(opts) {
+        super({
+            name: "ConflictException",
+            $fault: "client",
+            ...opts,
+        });
+        this.name = "ConflictException";
+        this.$fault = "client";
+        Object.setPrototypeOf(this, ConflictException.prototype);
+    }
+}
+exports.ConflictException = ConflictException;
 exports.ReadSetActivationJobStatus = {
     CANCELLED: "CANCELLED",
     CANCELLING: "CANCELLING",
@@ -146,19 +168,6 @@ var FormatOptions;
         return visitor._(value.$unknown[0], value.$unknown[1]);
     };
 })(FormatOptions = exports.FormatOptions || (exports.FormatOptions = {}));
-class ConflictException extends OmicsServiceException_1.OmicsServiceException {
-    constructor(opts) {
-        super({
-            name: "ConflictException",
-            $fault: "client",
-            ...opts,
-        });
-        this.name = "ConflictException";
-        this.$fault = "client";
-        Object.setPrototypeOf(this, ConflictException.prototype);
-    }
-}
-exports.ConflictException = ConflictException;
 var ReferenceItem;
 (function (ReferenceItem) {
     ReferenceItem.visit = (value, visitor) => {
@@ -215,6 +224,21 @@ exports.StoreStatus = {
     FAILED: "FAILED",
     UPDATING: "UPDATING",
 };
+var VersionOptions;
+(function (VersionOptions) {
+    VersionOptions.visit = (value, visitor) => {
+        if (value.tsvVersionOptions !== undefined)
+            return visitor.tsvVersionOptions(value.tsvVersionOptions);
+        return visitor._(value.$unknown[0], value.$unknown[1]);
+    };
+})(VersionOptions = exports.VersionOptions || (exports.VersionOptions = {}));
+exports.VersionStatus = {
+    ACTIVE: "ACTIVE",
+    CREATING: "CREATING",
+    DELETING: "DELETING",
+    FAILED: "FAILED",
+    UPDATING: "UPDATING",
+};
 exports.ReadSetPartSource = {
     SOURCE1: "SOURCE1",
     SOURCE2: "SOURCE2",
@@ -358,6 +382,10 @@ exports.TaskStatus = {
 exports.WorkflowExport = {
     DEFINITION: "DEFINITION",
 };
+exports.ResourceOwner = {
+    OTHER: "OTHER",
+    SELF: "SELF",
+};
 const GetReadSetResponseFilterSensitiveLog = (obj) => ({
     ...obj,
 });

package/dist-cjs/pagination/ListAnnotationStoreVersionsPaginator.js

@@ -0,0 +1,29 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.paginateListAnnotationStoreVersions = void 0;
+const ListAnnotationStoreVersionsCommand_1 = require("../commands/ListAnnotationStoreVersionsCommand");
+const OmicsClient_1 = require("../OmicsClient");
+const makePagedClientRequest = async (client, input, ...args) => {
+    return await client.send(new ListAnnotationStoreVersionsCommand_1.ListAnnotationStoreVersionsCommand(input), ...args);
+};
+async function* paginateListAnnotationStoreVersions(config, input, ...additionalArguments) {
+    let token = config.startingToken || undefined;
+    let hasNext = true;
+    let page;
+    while (hasNext) {
+        input.nextToken = token;
+        input["maxResults"] = config.pageSize;
+        if (config.client instanceof OmicsClient_1.OmicsClient) {
+            page = await makePagedClientRequest(config.client, input, ...additionalArguments);
+        }
+        else {
+            throw new Error("Invalid client, expected Omics | OmicsClient");
+        }
+        yield page;
+        const prevToken = token;
+        token = page.nextToken;
+        hasNext = !!(token && (!config.stopOnSameToken || token !== prevToken));
+    }
+    return undefined;
+}
+exports.paginateListAnnotationStoreVersions = paginateListAnnotationStoreVersions;

package/dist-cjs/pagination/ListSharesPaginator.js

@@ -0,0 +1,29 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.paginateListShares = void 0;
+const ListSharesCommand_1 = require("../commands/ListSharesCommand");
+const OmicsClient_1 = require("../OmicsClient");
+const makePagedClientRequest = async (client, input, ...args) => {
+    return await client.send(new ListSharesCommand_1.ListSharesCommand(input), ...args);
+};
+async function* paginateListShares(config, input, ...additionalArguments) {
+    let token = config.startingToken || undefined;
+    let hasNext = true;
+    let page;
+    while (hasNext) {
+        input.nextToken = token;
+        input["maxResults"] = config.pageSize;
+        if (config.client instanceof OmicsClient_1.OmicsClient) {
+            page = await makePagedClientRequest(config.client, input, ...additionalArguments);
+        }
+        else {
+            throw new Error("Invalid client, expected Omics | OmicsClient");
+        }
+        yield page;
+        const prevToken = token;
+        token = page.nextToken;
+        hasNext = !!(token && (!config.stopOnSameToken || token !== prevToken));
+    }
+    return undefined;
+}
+exports.paginateListShares = paginateListShares;

package/dist-cjs/pagination/index.js

@@ -3,6 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const tslib_1 = require("tslib");
 tslib_1.__exportStar(require("./Interfaces"), exports);
 tslib_1.__exportStar(require("./ListAnnotationImportJobsPaginator"), exports);
+tslib_1.__exportStar(require("./ListAnnotationStoreVersionsPaginator"), exports);
 tslib_1.__exportStar(require("./ListAnnotationStoresPaginator"), exports);
 tslib_1.__exportStar(require("./ListMultipartReadSetUploadsPaginator"), exports);
 tslib_1.__exportStar(require("./ListReadSetActivationJobsPaginator"), exports);
@@ -17,6 +18,7 @@ tslib_1.__exportStar(require("./ListRunGroupsPaginator"), exports);
 tslib_1.__exportStar(require("./ListRunTasksPaginator"), exports);
 tslib_1.__exportStar(require("./ListRunsPaginator"), exports);
 tslib_1.__exportStar(require("./ListSequenceStoresPaginator"), exports);
+tslib_1.__exportStar(require("./ListSharesPaginator"), exports);
 tslib_1.__exportStar(require("./ListVariantImportJobsPaginator"), exports);
 tslib_1.__exportStar(require("./ListVariantStoresPaginator"), exports);
 tslib_1.__exportStar(require("./ListWorkflowsPaginator"), exports);