@aws-sdk/client-omics 3.331.0 → 3.332.0

package/dist-types/commands/ListMultipartReadSetUploadsCommand.d.ts

@@ -0,0 +1,116 @@
+import { EndpointParameterInstructions } from "@aws-sdk/middleware-endpoint";
+import { Command as $Command } from "@aws-sdk/smithy-client";
+import { Handler, HttpHandlerOptions as __HttpHandlerOptions, MetadataBearer as __MetadataBearer, MiddlewareStack } from "@aws-sdk/types";
+import { ListMultipartReadSetUploadsRequest, ListMultipartReadSetUploadsResponse } from "../models/models_0";
+import { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
+/**
+ * @public
+ *
+ * The input for {@link ListMultipartReadSetUploadsCommand}.
+ */
+export interface ListMultipartReadSetUploadsCommandInput extends ListMultipartReadSetUploadsRequest {
+}
+/**
+ * @public
+ *
+ * The output of {@link ListMultipartReadSetUploadsCommand}.
+ */
+export interface ListMultipartReadSetUploadsCommandOutput extends ListMultipartReadSetUploadsResponse, __MetadataBearer {
+}
+/**
+ * @public
+ * <p>
+ *       Lists all multipart read set uploads and their statuses.
+ *     </p>
+ * @example
+ * Use a bare-bones client and the command you need to make an API call.
+ * ```javascript
+ * import { OmicsClient, ListMultipartReadSetUploadsCommand } from "@aws-sdk/client-omics"; // ES Modules import
+ * // const { OmicsClient, ListMultipartReadSetUploadsCommand } = require("@aws-sdk/client-omics"); // CommonJS import
+ * const client = new OmicsClient(config);
+ * const input = { // ListMultipartReadSetUploadsRequest
+ *   sequenceStoreId: "STRING_VALUE", // required
+ *   maxResults: Number("int"),
+ *   nextToken: "STRING_VALUE",
+ * };
+ * const command = new ListMultipartReadSetUploadsCommand(input);
+ * const response = await client.send(command);
+ * // { // ListMultipartReadSetUploadsResponse
+ * //   nextToken: "STRING_VALUE",
+ * //   uploads: [ // MultipartReadSetUploadList
+ * //     { // MultipartReadSetUploadListItem
+ * //       sequenceStoreId: "STRING_VALUE", // required
+ * //       uploadId: "STRING_VALUE", // required
+ * //       sourceFileType: "STRING_VALUE", // required
+ * //       subjectId: "STRING_VALUE", // required
+ * //       sampleId: "STRING_VALUE", // required
+ * //       generatedFrom: "STRING_VALUE", // required
+ * //       referenceArn: "STRING_VALUE", // required
+ * //       name: "STRING_VALUE",
+ * //       description: "STRING_VALUE",
+ * //       tags: { // TagMap
+ * //         "<keys>": "STRING_VALUE",
+ * //       },
+ * //       creationTime: new Date("TIMESTAMP"), // required
+ * //     },
+ * //   ],
+ * // };
+ *
+ * ```
+ *
+ * @param ListMultipartReadSetUploadsCommandInput - {@link ListMultipartReadSetUploadsCommandInput}
+ * @returns {@link ListMultipartReadSetUploadsCommandOutput}
+ * @see {@link ListMultipartReadSetUploadsCommandInput} for command's `input` shape.
+ * @see {@link ListMultipartReadSetUploadsCommandOutput} for command's `response` shape.
+ * @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
+ *
+ * @throws {@link AccessDeniedException} (client fault)
+ *  <p>You do not have sufficient access to perform this action.</p>
+ *
+ * @throws {@link InternalServerException} (server fault)
+ *  <p>An unexpected error occurred. Try the request again.</p>
+ *
+ * @throws {@link NotSupportedOperationException} (client fault)
+ *  <p>
+ *       The operation is not supported by Amazon Omics, or the API does not exist.
+ *     </p>
+ *
+ * @throws {@link RequestTimeoutException} (client fault)
+ *  <p>The request timed out.</p>
+ *
+ * @throws {@link ResourceNotFoundException} (client fault)
+ *  <p>The target resource was not found in the current Region.</p>
+ *
+ * @throws {@link ServiceQuotaExceededException} (client fault)
+ *  <p>The request exceeds a service quota.</p>
+ *
+ * @throws {@link ThrottlingException} (client fault)
+ *  <p>The request was denied due to request throttling.</p>
+ *
+ * @throws {@link ValidationException} (client fault)
+ *  <p>The input fails to satisfy the constraints specified by an AWS service.</p>
+ *
+ * @throws {@link OmicsServiceException}
+ * <p>Base exception class for all service exceptions from Omics service.</p>
+ *
+ */
+export declare class ListMultipartReadSetUploadsCommand extends $Command<ListMultipartReadSetUploadsCommandInput, ListMultipartReadSetUploadsCommandOutput, OmicsClientResolvedConfig> {
+    readonly input: ListMultipartReadSetUploadsCommandInput;
+    static getEndpointParameterInstructions(): EndpointParameterInstructions;
+    /**
+     * @public
+     */
+    constructor(input: ListMultipartReadSetUploadsCommandInput);
+    /**
+     * @internal
+     */
+    resolveMiddleware(clientStack: MiddlewareStack<ServiceInputTypes, ServiceOutputTypes>, configuration: OmicsClientResolvedConfig, options?: __HttpHandlerOptions): Handler<ListMultipartReadSetUploadsCommandInput, ListMultipartReadSetUploadsCommandOutput>;
+    /**
+     * @internal
+     */
+    private serialize;
+    /**
+     * @internal
+     */
+    private deserialize;
+}

package/dist-types/commands/ListReadSetUploadPartsCommand.d.ts

@@ -0,0 +1,115 @@
+import { EndpointParameterInstructions } from "@aws-sdk/middleware-endpoint";
+import { Command as $Command } from "@aws-sdk/smithy-client";
+import { Handler, HttpHandlerOptions as __HttpHandlerOptions, MetadataBearer as __MetadataBearer, MiddlewareStack } from "@aws-sdk/types";
+import { ListReadSetUploadPartsRequest, ListReadSetUploadPartsResponse } from "../models/models_0";
+import { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
+/**
+ * @public
+ *
+ * The input for {@link ListReadSetUploadPartsCommand}.
+ */
+export interface ListReadSetUploadPartsCommandInput extends ListReadSetUploadPartsRequest {
+}
+/**
+ * @public
+ *
+ * The output of {@link ListReadSetUploadPartsCommand}.
+ */
+export interface ListReadSetUploadPartsCommandOutput extends ListReadSetUploadPartsResponse, __MetadataBearer {
+}
+/**
+ * @public
+ * <p>
+ *       This operation will list all parts in a requested multipart upload for a sequence store.
+ *     </p>
+ * @example
+ * Use a bare-bones client and the command you need to make an API call.
+ * ```javascript
+ * import { OmicsClient, ListReadSetUploadPartsCommand } from "@aws-sdk/client-omics"; // ES Modules import
+ * // const { OmicsClient, ListReadSetUploadPartsCommand } = require("@aws-sdk/client-omics"); // CommonJS import
+ * const client = new OmicsClient(config);
+ * const input = { // ListReadSetUploadPartsRequest
+ *   sequenceStoreId: "STRING_VALUE", // required
+ *   uploadId: "STRING_VALUE", // required
+ *   partSource: "STRING_VALUE", // required
+ *   maxResults: Number("int"),
+ *   nextToken: "STRING_VALUE",
+ *   filter: { // ReadSetUploadPartListFilter
+ *     createdAfter: new Date("TIMESTAMP"),
+ *     createdBefore: new Date("TIMESTAMP"),
+ *   },
+ * };
+ * const command = new ListReadSetUploadPartsCommand(input);
+ * const response = await client.send(command);
+ * // { // ListReadSetUploadPartsResponse
+ * //   nextToken: "STRING_VALUE",
+ * //   parts: [ // ReadSetUploadPartList
+ * //     { // ReadSetUploadPartListItem
+ * //       partNumber: Number("int"), // required
+ * //       partSize: Number("long"), // required
+ * //       partSource: "STRING_VALUE", // required
+ * //       checksum: "STRING_VALUE", // required
+ * //       creationTime: new Date("TIMESTAMP"),
+ * //       lastUpdatedTime: new Date("TIMESTAMP"),
+ * //     },
+ * //   ],
+ * // };
+ *
+ * ```
+ *
+ * @param ListReadSetUploadPartsCommandInput - {@link ListReadSetUploadPartsCommandInput}
+ * @returns {@link ListReadSetUploadPartsCommandOutput}
+ * @see {@link ListReadSetUploadPartsCommandInput} for command's `input` shape.
+ * @see {@link ListReadSetUploadPartsCommandOutput} for command's `response` shape.
+ * @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
+ *
+ * @throws {@link AccessDeniedException} (client fault)
+ *  <p>You do not have sufficient access to perform this action.</p>
+ *
+ * @throws {@link InternalServerException} (server fault)
+ *  <p>An unexpected error occurred. Try the request again.</p>
+ *
+ * @throws {@link NotSupportedOperationException} (client fault)
+ *  <p>
+ *       The operation is not supported by Amazon Omics, or the API does not exist.
+ *     </p>
+ *
+ * @throws {@link RequestTimeoutException} (client fault)
+ *  <p>The request timed out.</p>
+ *
+ * @throws {@link ResourceNotFoundException} (client fault)
+ *  <p>The target resource was not found in the current Region.</p>
+ *
+ * @throws {@link ServiceQuotaExceededException} (client fault)
+ *  <p>The request exceeds a service quota.</p>
+ *
+ * @throws {@link ThrottlingException} (client fault)
+ *  <p>The request was denied due to request throttling.</p>
+ *
+ * @throws {@link ValidationException} (client fault)
+ *  <p>The input fails to satisfy the constraints specified by an AWS service.</p>
+ *
+ * @throws {@link OmicsServiceException}
+ * <p>Base exception class for all service exceptions from Omics service.</p>
+ *
+ */
+export declare class ListReadSetUploadPartsCommand extends $Command<ListReadSetUploadPartsCommandInput, ListReadSetUploadPartsCommandOutput, OmicsClientResolvedConfig> {
+    readonly input: ListReadSetUploadPartsCommandInput;
+    static getEndpointParameterInstructions(): EndpointParameterInstructions;
+    /**
+     * @public
+     */
+    constructor(input: ListReadSetUploadPartsCommandInput);
+    /**
+     * @internal
+     */
+    resolveMiddleware(clientStack: MiddlewareStack<ServiceInputTypes, ServiceOutputTypes>, configuration: OmicsClientResolvedConfig, options?: __HttpHandlerOptions): Handler<ListReadSetUploadPartsCommandInput, ListReadSetUploadPartsCommandOutput>;
+    /**
+     * @internal
+     */
+    private serialize;
+    /**
+     * @internal
+     */
+    private deserialize;
+}

package/dist-types/commands/ListReadSetsCommand.d.ts

@@ -36,6 +36,9 @@ export interface ListReadSetsCommandOutput extends ListReadSetsResponse, __Metad
  *     referenceArn: "STRING_VALUE",
  *     createdAfter: new Date("TIMESTAMP"),
  *     createdBefore: new Date("TIMESTAMP"),
+ *     sampleId: "STRING_VALUE",
+ *     subjectId: "STRING_VALUE",
+ *     generatedFrom: "STRING_VALUE",
  *   },
  * };
  * const command = new ListReadSetsCommand(input);
@@ -61,6 +64,7 @@ export interface ListReadSetsCommandOutput extends ListReadSetsResponse, __Metad
  * //         alignment: "STRING_VALUE",
  * //       },
  * //       creationTime: new Date("TIMESTAMP"), // required
+ * //       statusMessage: "STRING_VALUE",
  * //     },
  * //   ],
  * // };

package/dist-types/commands/ListRunGroupsCommand.d.ts

@@ -43,6 +43,7 @@ export interface ListRunGroupsCommandOutput extends ListRunGroupsResponse, __Met
  * //       maxRuns: Number("int"),
  * //       maxDuration: Number("int"),
  * //       creationTime: new Date("TIMESTAMP"),
+ * //       maxGpus: Number("int"),
  * //     },
  * //   ],
  * //   nextToken: "STRING_VALUE",

package/dist-types/commands/ListRunTasksCommand.d.ts

@@ -45,6 +45,7 @@ export interface ListRunTasksCommandOutput extends ListRunTasksResponse, __Metad
  * //       creationTime: new Date("TIMESTAMP"),
  * //       startTime: new Date("TIMESTAMP"),
  * //       stopTime: new Date("TIMESTAMP"),
+ * //       gpus: Number("int"),
  * //     },
  * //   ],
  * //   nextToken: "STRING_VALUE",

package/dist-types/commands/ListRunsCommand.d.ts

@@ -31,6 +31,7 @@ export interface ListRunsCommandOutput extends ListRunsResponse, __MetadataBeare
  *   runGroupId: "STRING_VALUE",
  *   startingToken: "STRING_VALUE",
  *   maxResults: Number("int"),
+ *   status: "STRING_VALUE",
  * };
  * const command = new ListRunsCommand(input);
  * const response = await client.send(command);

package/dist-types/commands/ListSequenceStoresCommand.d.ts

@@ -50,6 +50,7 @@ export interface ListSequenceStoresCommandOutput extends ListSequenceStoresRespo
  * //         keyArn: "STRING_VALUE",
  * //       },
  * //       creationTime: new Date("TIMESTAMP"), // required
+ * //       fallbackLocation: "STRING_VALUE",
  * //     },
  * //   ],
  * // };

package/dist-types/commands/ListVariantImportJobsCommand.d.ts

@@ -50,6 +50,9 @@ export interface ListVariantImportJobsCommandOutput extends ListVariantImportJob
  * //       updateTime: new Date("TIMESTAMP"), // required
  * //       completionTime: new Date("TIMESTAMP"),
  * //       runLeftNormalization: true || false,
+ * //       annotationFields: { // AnnotationFieldMap
+ * //         "<keys>": "STRING_VALUE",
+ * //       },
  * //     },
  * //   ],
  * //   nextToken: "STRING_VALUE",

package/dist-types/commands/ListWorkflowsCommand.d.ts

@@ -44,6 +44,9 @@ export interface ListWorkflowsCommandOutput extends ListWorkflowsResponse, __Met
  * //       type: "STRING_VALUE",
  * //       digest: "STRING_VALUE",
  * //       creationTime: new Date("TIMESTAMP"),
+ * //       metadata: { // WorkflowMetadata
+ * //         "<keys>": "STRING_VALUE",
+ * //       },
  * //     },
  * //   ],
  * //   nextToken: "STRING_VALUE",

package/dist-types/commands/StartAnnotationImportJobCommand.d.ts

@@ -54,6 +54,9 @@ export interface StartAnnotationImportJobCommandOutput extends StartAnnotationIm
  *     },
  *   },
  *   runLeftNormalization: true || false,
+ *   annotationFields: { // AnnotationFieldMap
+ *     "<keys>": "STRING_VALUE",
+ *   },
  * };
  * const command = new StartAnnotationImportJobCommand(input);
  * const response = await client.send(command);

package/dist-types/commands/StartVariantImportJobCommand.d.ts

@@ -35,6 +35,9 @@ export interface StartVariantImportJobCommandOutput extends StartVariantImportRe
  *     },
  *   ],
  *   runLeftNormalization: true || false,
+ *   annotationFields: { // AnnotationFieldMap
+ *     "<keys>": "STRING_VALUE",
+ *   },
  * };
  * const command = new StartVariantImportJobCommand(input);
  * const response = await client.send(command);

package/dist-types/commands/UpdateRunGroupCommand.d.ts

@@ -32,6 +32,7 @@ export interface UpdateRunGroupCommandOutput extends __MetadataBearer {
  *   maxCpus: Number("int"),
  *   maxRuns: Number("int"),
  *   maxDuration: Number("int"),
+ *   maxGpus: Number("int"),
  * };
  * const command = new UpdateRunGroupCommand(input);
  * const response = await client.send(command);

package/dist-types/commands/UploadReadSetPartCommand.d.ts

@@ -0,0 +1,111 @@
+/// <reference types="node" />
+import { EndpointParameterInstructions } from "@aws-sdk/middleware-endpoint";
+import { Command as $Command } from "@aws-sdk/smithy-client";
+import { Handler, HttpHandlerOptions as __HttpHandlerOptions, MetadataBearer as __MetadataBearer, MiddlewareStack } from "@aws-sdk/types";
+import { UploadReadSetPartRequest, UploadReadSetPartResponse } from "../models/models_0";
+import { OmicsClientResolvedConfig, ServiceInputTypes, ServiceOutputTypes } from "../OmicsClient";
+/**
+ * @public
+ *
+ * The input for {@link UploadReadSetPartCommand}.
+ */
+export type UploadReadSetPartCommandInputType = Omit<UploadReadSetPartRequest, "payload"> & {
+    /**
+     * For *`UploadReadSetPartRequest["payload"]`*, see {@link UploadReadSetPartRequest.payload}.
+     */
+    payload: UploadReadSetPartRequest["payload"] | string | Uint8Array | Buffer;
+};
+/**
+ * This interface extends from `UploadReadSetPartRequest` interface. There are more parameters than `payload` defined in {@link UploadReadSetPartRequest}
+ */
+export interface UploadReadSetPartCommandInput extends UploadReadSetPartCommandInputType {
+}
+/**
+ * @public
+ *
+ * The output of {@link UploadReadSetPartCommand}.
+ */
+export interface UploadReadSetPartCommandOutput extends UploadReadSetPartResponse, __MetadataBearer {
+}
+/**
+ * @public
+ * <p>
+ *       This operation uploads a specific part of a read set. If you upload a new part using a previously used part number, the previously uploaded part will be overwritten.
+ *     </p>
+ * @example
+ * Use a bare-bones client and the command you need to make an API call.
+ * ```javascript
+ * import { OmicsClient, UploadReadSetPartCommand } from "@aws-sdk/client-omics"; // ES Modules import
+ * // const { OmicsClient, UploadReadSetPartCommand } = require("@aws-sdk/client-omics"); // CommonJS import
+ * const client = new OmicsClient(config);
+ * const input = { // UploadReadSetPartRequest
+ *   sequenceStoreId: "STRING_VALUE", // required
+ *   uploadId: "STRING_VALUE", // required
+ *   partSource: "STRING_VALUE", // required
+ *   partNumber: Number("int"), // required
+ *   payload: "STREAMING_BLOB_VALUE", // required
+ * };
+ * const command = new UploadReadSetPartCommand(input);
+ * const response = await client.send(command);
+ * // { // UploadReadSetPartResponse
+ * //   checksum: "STRING_VALUE", // required
+ * // };
+ *
+ * ```
+ *
+ * @param UploadReadSetPartCommandInput - {@link UploadReadSetPartCommandInput}
+ * @returns {@link UploadReadSetPartCommandOutput}
+ * @see {@link UploadReadSetPartCommandInput} for command's `input` shape.
+ * @see {@link UploadReadSetPartCommandOutput} for command's `response` shape.
+ * @see {@link OmicsClientResolvedConfig | config} for OmicsClient's `config` shape.
+ *
+ * @throws {@link AccessDeniedException} (client fault)
+ *  <p>You do not have sufficient access to perform this action.</p>
+ *
+ * @throws {@link InternalServerException} (server fault)
+ *  <p>An unexpected error occurred. Try the request again.</p>
+ *
+ * @throws {@link NotSupportedOperationException} (client fault)
+ *  <p>
+ *       The operation is not supported by Amazon Omics, or the API does not exist.
+ *     </p>
+ *
+ * @throws {@link RequestTimeoutException} (client fault)
+ *  <p>The request timed out.</p>
+ *
+ * @throws {@link ResourceNotFoundException} (client fault)
+ *  <p>The target resource was not found in the current Region.</p>
+ *
+ * @throws {@link ServiceQuotaExceededException} (client fault)
+ *  <p>The request exceeds a service quota.</p>
+ *
+ * @throws {@link ThrottlingException} (client fault)
+ *  <p>The request was denied due to request throttling.</p>
+ *
+ * @throws {@link ValidationException} (client fault)
+ *  <p>The input fails to satisfy the constraints specified by an AWS service.</p>
+ *
+ * @throws {@link OmicsServiceException}
+ * <p>Base exception class for all service exceptions from Omics service.</p>
+ *
+ */
+export declare class UploadReadSetPartCommand extends $Command<UploadReadSetPartCommandInput, UploadReadSetPartCommandOutput, OmicsClientResolvedConfig> {
+    readonly input: UploadReadSetPartCommandInput;
+    static getEndpointParameterInstructions(): EndpointParameterInstructions;
+    /**
+     * @public
+     */
+    constructor(input: UploadReadSetPartCommandInput);
+    /**
+     * @internal
+     */
+    resolveMiddleware(clientStack: MiddlewareStack<ServiceInputTypes, ServiceOutputTypes>, configuration: OmicsClientResolvedConfig, options?: __HttpHandlerOptions): Handler<UploadReadSetPartCommandInput, UploadReadSetPartCommandOutput>;
+    /**
+     * @internal
+     */
+    private serialize;
+    /**
+     * @internal
+     */
+    private deserialize;
+}

package/dist-types/commands/index.d.ts

@@ -1,8 +1,11 @@
+export * from "./AbortMultipartReadSetUploadCommand";
 export * from "./BatchDeleteReadSetCommand";
 export * from "./CancelAnnotationImportJobCommand";
 export * from "./CancelRunCommand";
 export * from "./CancelVariantImportJobCommand";
+export * from "./CompleteMultipartReadSetUploadCommand";
 export * from "./CreateAnnotationStoreCommand";
+export * from "./CreateMultipartReadSetUploadCommand";
 export * from "./CreateReferenceStoreCommand";
 export * from "./CreateRunGroupCommand";
 export * from "./CreateSequenceStoreCommand";
@@ -36,9 +39,11 @@ export * from "./GetVariantStoreCommand";
 export * from "./GetWorkflowCommand";
 export * from "./ListAnnotationImportJobsCommand";
 export * from "./ListAnnotationStoresCommand";
+export * from "./ListMultipartReadSetUploadsCommand";
 export * from "./ListReadSetActivationJobsCommand";
 export * from "./ListReadSetExportJobsCommand";
 export * from "./ListReadSetImportJobsCommand";
+export * from "./ListReadSetUploadPartsCommand";
 export * from "./ListReadSetsCommand";
 export * from "./ListReferenceImportJobsCommand";
 export * from "./ListReferenceStoresCommand";
@@ -64,3 +69,4 @@ export * from "./UpdateAnnotationStoreCommand";
 export * from "./UpdateRunGroupCommand";
 export * from "./UpdateVariantStoreCommand";
 export * from "./UpdateWorkflowCommand";
+export * from "./UploadReadSetPartCommand";