@aws-sdk/client-omics 3.331.0 → 3.332.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +56 -8
- package/dist-cjs/Omics.js +12 -0
- package/dist-cjs/commands/AbortMultipartReadSetUploadCommand.js +45 -0
- package/dist-cjs/commands/CompleteMultipartReadSetUploadCommand.js +45 -0
- package/dist-cjs/commands/CreateMultipartReadSetUploadCommand.js +45 -0
- package/dist-cjs/commands/ListMultipartReadSetUploadsCommand.js +45 -0
- package/dist-cjs/commands/ListReadSetUploadPartsCommand.js +45 -0
- package/dist-cjs/commands/UploadReadSetPartCommand.js +46 -0
- package/dist-cjs/commands/index.js +6 -0
- package/dist-cjs/models/models_0.js +83 -55
- package/dist-cjs/pagination/ListMultipartReadSetUploadsPaginator.js +29 -0
- package/dist-cjs/pagination/ListReadSetUploadPartsPaginator.js +29 -0
- package/dist-cjs/pagination/index.js +2 -0
- package/dist-cjs/protocols/Aws_restJson1.js +625 -3
- package/dist-es/Omics.js +12 -0
- package/dist-es/commands/AbortMultipartReadSetUploadCommand.js +41 -0
- package/dist-es/commands/CompleteMultipartReadSetUploadCommand.js +41 -0
- package/dist-es/commands/CreateMultipartReadSetUploadCommand.js +41 -0
- package/dist-es/commands/ListMultipartReadSetUploadsCommand.js +41 -0
- package/dist-es/commands/ListReadSetUploadPartsCommand.js +41 -0
- package/dist-es/commands/UploadReadSetPartCommand.js +42 -0
- package/dist-es/commands/index.js +6 -0
- package/dist-es/models/models_0.js +78 -52
- package/dist-es/pagination/ListMultipartReadSetUploadsPaginator.js +25 -0
- package/dist-es/pagination/ListReadSetUploadPartsPaginator.js +25 -0
- package/dist-es/pagination/index.js +2 -0
- package/dist-es/protocols/Aws_restJson1.js +611 -1
- package/dist-types/Omics.d.ts +43 -1
- package/dist-types/OmicsClient.d.ts +9 -3
- package/dist-types/commands/AbortMultipartReadSetUploadCommand.d.ts +96 -0
- package/dist-types/commands/CompleteMultipartReadSetUploadCommand.d.ts +105 -0
- package/dist-types/commands/CreateMultipartReadSetUploadCommand.d.ts +120 -0
- package/dist-types/commands/CreateRunGroupCommand.d.ts +1 -0
- package/dist-types/commands/CreateSequenceStoreCommand.d.ts +2 -0
- package/dist-types/commands/CreateWorkflowCommand.d.ts +1 -0
- package/dist-types/commands/GetAnnotationImportJobCommand.d.ts +3 -0
- package/dist-types/commands/GetReadSetMetadataCommand.d.ts +1 -0
- package/dist-types/commands/GetRunCommand.d.ts +1 -0
- package/dist-types/commands/GetRunGroupCommand.d.ts +1 -0
- package/dist-types/commands/GetRunTaskCommand.d.ts +1 -0
- package/dist-types/commands/GetSequenceStoreCommand.d.ts +1 -0
- package/dist-types/commands/GetVariantImportJobCommand.d.ts +3 -0
- package/dist-types/commands/GetWorkflowCommand.d.ts +4 -0
- package/dist-types/commands/ListAnnotationImportJobsCommand.d.ts +3 -0
- package/dist-types/commands/ListMultipartReadSetUploadsCommand.d.ts +116 -0
- package/dist-types/commands/ListReadSetUploadPartsCommand.d.ts +115 -0
- package/dist-types/commands/ListReadSetsCommand.d.ts +4 -0
- package/dist-types/commands/ListRunGroupsCommand.d.ts +1 -0
- package/dist-types/commands/ListRunTasksCommand.d.ts +1 -0
- package/dist-types/commands/ListRunsCommand.d.ts +1 -0
- package/dist-types/commands/ListSequenceStoresCommand.d.ts +1 -0
- package/dist-types/commands/ListVariantImportJobsCommand.d.ts +3 -0
- package/dist-types/commands/ListWorkflowsCommand.d.ts +3 -0
- package/dist-types/commands/StartAnnotationImportJobCommand.d.ts +3 -0
- package/dist-types/commands/StartVariantImportJobCommand.d.ts +3 -0
- package/dist-types/commands/UpdateRunGroupCommand.d.ts +1 -0
- package/dist-types/commands/UploadReadSetPartCommand.d.ts +111 -0
- package/dist-types/commands/index.d.ts +6 -0
- package/dist-types/models/models_0.d.ts +825 -119
- package/dist-types/pagination/ListMultipartReadSetUploadsPaginator.d.ts +7 -0
- package/dist-types/pagination/ListReadSetUploadPartsPaginator.d.ts +7 -0
- package/dist-types/pagination/index.d.ts +2 -0
- package/dist-types/protocols/Aws_restJson1.d.ts +54 -0
- package/dist-types/ts3.4/Omics.d.ts +102 -0
- package/dist-types/ts3.4/OmicsClient.d.ts +38 -2
- package/dist-types/ts3.4/commands/AbortMultipartReadSetUploadCommand.d.ts +41 -0
- package/dist-types/ts3.4/commands/CompleteMultipartReadSetUploadCommand.d.ts +41 -0
- package/dist-types/ts3.4/commands/CreateMultipartReadSetUploadCommand.d.ts +41 -0
- package/dist-types/ts3.4/commands/ListMultipartReadSetUploadsCommand.d.ts +41 -0
- package/dist-types/ts3.4/commands/ListReadSetUploadPartsCommand.d.ts +41 -0
- package/dist-types/ts3.4/commands/UploadReadSetPartCommand.d.ts +44 -0
- package/dist-types/ts3.4/commands/index.d.ts +6 -0
- package/dist-types/ts3.4/models/models_0.d.ts +202 -52
- package/dist-types/ts3.4/pagination/ListMultipartReadSetUploadsPaginator.d.ts +11 -0
- package/dist-types/ts3.4/pagination/ListReadSetUploadPartsPaginator.d.ts +11 -0
- package/dist-types/ts3.4/pagination/index.d.ts +2 -0
- package/dist-types/ts3.4/protocols/Aws_restJson1.d.ts +72 -0
- package/package.json +5 -5
|
@@ -0,0 +1,41 @@
|
|
|
1
|
+
import { EndpointParameterInstructions } from "@aws-sdk/middleware-endpoint";
|
|
2
|
+
import { Command as $Command } from "@aws-sdk/smithy-client";
|
|
3
|
+
import {
|
|
4
|
+
Handler,
|
|
5
|
+
HttpHandlerOptions as __HttpHandlerOptions,
|
|
6
|
+
MetadataBearer as __MetadataBearer,
|
|
7
|
+
MiddlewareStack,
|
|
8
|
+
} from "@aws-sdk/types";
|
|
9
|
+
import {
|
|
10
|
+
ListReadSetUploadPartsRequest,
|
|
11
|
+
ListReadSetUploadPartsResponse,
|
|
12
|
+
} from "../models/models_0";
|
|
13
|
+
import {
|
|
14
|
+
OmicsClientResolvedConfig,
|
|
15
|
+
ServiceInputTypes,
|
|
16
|
+
ServiceOutputTypes,
|
|
17
|
+
} from "../OmicsClient";
|
|
18
|
+
export interface ListReadSetUploadPartsCommandInput
|
|
19
|
+
extends ListReadSetUploadPartsRequest {}
|
|
20
|
+
export interface ListReadSetUploadPartsCommandOutput
|
|
21
|
+
extends ListReadSetUploadPartsResponse,
|
|
22
|
+
__MetadataBearer {}
|
|
23
|
+
export declare class ListReadSetUploadPartsCommand extends $Command<
|
|
24
|
+
ListReadSetUploadPartsCommandInput,
|
|
25
|
+
ListReadSetUploadPartsCommandOutput,
|
|
26
|
+
OmicsClientResolvedConfig
|
|
27
|
+
> {
|
|
28
|
+
readonly input: ListReadSetUploadPartsCommandInput;
|
|
29
|
+
static getEndpointParameterInstructions(): EndpointParameterInstructions;
|
|
30
|
+
constructor(input: ListReadSetUploadPartsCommandInput);
|
|
31
|
+
resolveMiddleware(
|
|
32
|
+
clientStack: MiddlewareStack<ServiceInputTypes, ServiceOutputTypes>,
|
|
33
|
+
configuration: OmicsClientResolvedConfig,
|
|
34
|
+
options?: __HttpHandlerOptions
|
|
35
|
+
): Handler<
|
|
36
|
+
ListReadSetUploadPartsCommandInput,
|
|
37
|
+
ListReadSetUploadPartsCommandOutput
|
|
38
|
+
>;
|
|
39
|
+
private serialize;
|
|
40
|
+
private deserialize;
|
|
41
|
+
}
|
|
@@ -0,0 +1,44 @@
|
|
|
1
|
+
import { EndpointParameterInstructions } from "@aws-sdk/middleware-endpoint";
|
|
2
|
+
import { Command as $Command } from "@aws-sdk/smithy-client";
|
|
3
|
+
import {
|
|
4
|
+
Handler,
|
|
5
|
+
HttpHandlerOptions as __HttpHandlerOptions,
|
|
6
|
+
MetadataBearer as __MetadataBearer,
|
|
7
|
+
MiddlewareStack,
|
|
8
|
+
} from "@aws-sdk/types";
|
|
9
|
+
import {
|
|
10
|
+
UploadReadSetPartRequest,
|
|
11
|
+
UploadReadSetPartResponse,
|
|
12
|
+
} from "../models/models_0";
|
|
13
|
+
import {
|
|
14
|
+
OmicsClientResolvedConfig,
|
|
15
|
+
ServiceInputTypes,
|
|
16
|
+
ServiceOutputTypes,
|
|
17
|
+
} from "../OmicsClient";
|
|
18
|
+
export type UploadReadSetPartCommandInputType = Pick<
|
|
19
|
+
UploadReadSetPartRequest,
|
|
20
|
+
Exclude<keyof UploadReadSetPartRequest, "payload">
|
|
21
|
+
> & {
|
|
22
|
+
payload: UploadReadSetPartRequest["payload"] | string | Uint8Array | Buffer;
|
|
23
|
+
};
|
|
24
|
+
export interface UploadReadSetPartCommandInput
|
|
25
|
+
extends UploadReadSetPartCommandInputType {}
|
|
26
|
+
export interface UploadReadSetPartCommandOutput
|
|
27
|
+
extends UploadReadSetPartResponse,
|
|
28
|
+
__MetadataBearer {}
|
|
29
|
+
export declare class UploadReadSetPartCommand extends $Command<
|
|
30
|
+
UploadReadSetPartCommandInput,
|
|
31
|
+
UploadReadSetPartCommandOutput,
|
|
32
|
+
OmicsClientResolvedConfig
|
|
33
|
+
> {
|
|
34
|
+
readonly input: UploadReadSetPartCommandInput;
|
|
35
|
+
static getEndpointParameterInstructions(): EndpointParameterInstructions;
|
|
36
|
+
constructor(input: UploadReadSetPartCommandInput);
|
|
37
|
+
resolveMiddleware(
|
|
38
|
+
clientStack: MiddlewareStack<ServiceInputTypes, ServiceOutputTypes>,
|
|
39
|
+
configuration: OmicsClientResolvedConfig,
|
|
40
|
+
options?: __HttpHandlerOptions
|
|
41
|
+
): Handler<UploadReadSetPartCommandInput, UploadReadSetPartCommandOutput>;
|
|
42
|
+
private serialize;
|
|
43
|
+
private deserialize;
|
|
44
|
+
}
|
|
@@ -1,8 +1,11 @@
|
|
|
1
|
+
export * from "./AbortMultipartReadSetUploadCommand";
|
|
1
2
|
export * from "./BatchDeleteReadSetCommand";
|
|
2
3
|
export * from "./CancelAnnotationImportJobCommand";
|
|
3
4
|
export * from "./CancelRunCommand";
|
|
4
5
|
export * from "./CancelVariantImportJobCommand";
|
|
6
|
+
export * from "./CompleteMultipartReadSetUploadCommand";
|
|
5
7
|
export * from "./CreateAnnotationStoreCommand";
|
|
8
|
+
export * from "./CreateMultipartReadSetUploadCommand";
|
|
6
9
|
export * from "./CreateReferenceStoreCommand";
|
|
7
10
|
export * from "./CreateRunGroupCommand";
|
|
8
11
|
export * from "./CreateSequenceStoreCommand";
|
|
@@ -36,9 +39,11 @@ export * from "./GetVariantStoreCommand";
|
|
|
36
39
|
export * from "./GetWorkflowCommand";
|
|
37
40
|
export * from "./ListAnnotationImportJobsCommand";
|
|
38
41
|
export * from "./ListAnnotationStoresCommand";
|
|
42
|
+
export * from "./ListMultipartReadSetUploadsCommand";
|
|
39
43
|
export * from "./ListReadSetActivationJobsCommand";
|
|
40
44
|
export * from "./ListReadSetExportJobsCommand";
|
|
41
45
|
export * from "./ListReadSetImportJobsCommand";
|
|
46
|
+
export * from "./ListReadSetUploadPartsCommand";
|
|
42
47
|
export * from "./ListReadSetsCommand";
|
|
43
48
|
export * from "./ListReferenceImportJobsCommand";
|
|
44
49
|
export * from "./ListReferenceStoresCommand";
|
|
@@ -64,3 +69,4 @@ export * from "./UpdateAnnotationStoreCommand";
|
|
|
64
69
|
export * from "./UpdateRunGroupCommand";
|
|
65
70
|
export * from "./UpdateVariantStoreCommand";
|
|
66
71
|
export * from "./UpdateWorkflowCommand";
|
|
72
|
+
export * from "./UploadReadSetPartCommand";
|
|
@@ -2,6 +2,11 @@ import { ExceptionOptionType as __ExceptionOptionType } from "@aws-sdk/smithy-cl
|
|
|
2
2
|
import { DocumentType as __DocumentType } from "@aws-sdk/types";
|
|
3
3
|
import { Readable } from "stream";
|
|
4
4
|
import { OmicsServiceException as __BaseException } from "./OmicsServiceException";
|
|
5
|
+
export interface AbortMultipartReadSetUploadRequest {
|
|
6
|
+
sequenceStoreId: string | undefined;
|
|
7
|
+
uploadId: string | undefined;
|
|
8
|
+
}
|
|
9
|
+
export interface AbortMultipartReadSetUploadResponse {}
|
|
5
10
|
export declare class AccessDeniedException extends __BaseException {
|
|
6
11
|
readonly name: "AccessDeniedException";
|
|
7
12
|
readonly $fault: "client";
|
|
@@ -9,6 +14,63 @@ export declare class AccessDeniedException extends __BaseException {
|
|
|
9
14
|
opts: __ExceptionOptionType<AccessDeniedException, __BaseException>
|
|
10
15
|
);
|
|
11
16
|
}
|
|
17
|
+
export declare class InternalServerException extends __BaseException {
|
|
18
|
+
readonly name: "InternalServerException";
|
|
19
|
+
readonly $fault: "server";
|
|
20
|
+
$retryable: {};
|
|
21
|
+
constructor(
|
|
22
|
+
opts: __ExceptionOptionType<InternalServerException, __BaseException>
|
|
23
|
+
);
|
|
24
|
+
}
|
|
25
|
+
export declare class NotSupportedOperationException extends __BaseException {
|
|
26
|
+
readonly name: "NotSupportedOperationException";
|
|
27
|
+
readonly $fault: "client";
|
|
28
|
+
constructor(
|
|
29
|
+
opts: __ExceptionOptionType<NotSupportedOperationException, __BaseException>
|
|
30
|
+
);
|
|
31
|
+
}
|
|
32
|
+
export declare class RequestTimeoutException extends __BaseException {
|
|
33
|
+
readonly name: "RequestTimeoutException";
|
|
34
|
+
readonly $fault: "client";
|
|
35
|
+
constructor(
|
|
36
|
+
opts: __ExceptionOptionType<RequestTimeoutException, __BaseException>
|
|
37
|
+
);
|
|
38
|
+
}
|
|
39
|
+
export declare class ResourceNotFoundException extends __BaseException {
|
|
40
|
+
readonly name: "ResourceNotFoundException";
|
|
41
|
+
readonly $fault: "client";
|
|
42
|
+
constructor(
|
|
43
|
+
opts: __ExceptionOptionType<ResourceNotFoundException, __BaseException>
|
|
44
|
+
);
|
|
45
|
+
}
|
|
46
|
+
export declare class ServiceQuotaExceededException extends __BaseException {
|
|
47
|
+
readonly name: "ServiceQuotaExceededException";
|
|
48
|
+
readonly $fault: "client";
|
|
49
|
+
constructor(
|
|
50
|
+
opts: __ExceptionOptionType<ServiceQuotaExceededException, __BaseException>
|
|
51
|
+
);
|
|
52
|
+
}
|
|
53
|
+
export declare class ThrottlingException extends __BaseException {
|
|
54
|
+
readonly name: "ThrottlingException";
|
|
55
|
+
readonly $fault: "client";
|
|
56
|
+
$retryable: {
|
|
57
|
+
throttling: boolean;
|
|
58
|
+
};
|
|
59
|
+
constructor(
|
|
60
|
+
opts: __ExceptionOptionType<ThrottlingException, __BaseException>
|
|
61
|
+
);
|
|
62
|
+
}
|
|
63
|
+
export declare class ValidationException extends __BaseException {
|
|
64
|
+
readonly name: "ValidationException";
|
|
65
|
+
readonly $fault: "client";
|
|
66
|
+
constructor(
|
|
67
|
+
opts: __ExceptionOptionType<ValidationException, __BaseException>
|
|
68
|
+
);
|
|
69
|
+
}
|
|
70
|
+
export declare const Accelerators: {
|
|
71
|
+
readonly GPU: "GPU";
|
|
72
|
+
};
|
|
73
|
+
export type Accelerators = (typeof Accelerators)[keyof typeof Accelerators];
|
|
12
74
|
export declare const ReadSetActivationJobStatus: {
|
|
13
75
|
readonly CANCELLED: "CANCELLED";
|
|
14
76
|
readonly CANCELLING: "CANCELLING";
|
|
@@ -65,38 +127,6 @@ export interface CancelAnnotationImportRequest {
|
|
|
65
127
|
jobId: string | undefined;
|
|
66
128
|
}
|
|
67
129
|
export interface CancelAnnotationImportResponse {}
|
|
68
|
-
export declare class InternalServerException extends __BaseException {
|
|
69
|
-
readonly name: "InternalServerException";
|
|
70
|
-
readonly $fault: "server";
|
|
71
|
-
$retryable: {};
|
|
72
|
-
constructor(
|
|
73
|
-
opts: __ExceptionOptionType<InternalServerException, __BaseException>
|
|
74
|
-
);
|
|
75
|
-
}
|
|
76
|
-
export declare class ResourceNotFoundException extends __BaseException {
|
|
77
|
-
readonly name: "ResourceNotFoundException";
|
|
78
|
-
readonly $fault: "client";
|
|
79
|
-
constructor(
|
|
80
|
-
opts: __ExceptionOptionType<ResourceNotFoundException, __BaseException>
|
|
81
|
-
);
|
|
82
|
-
}
|
|
83
|
-
export declare class ThrottlingException extends __BaseException {
|
|
84
|
-
readonly name: "ThrottlingException";
|
|
85
|
-
readonly $fault: "client";
|
|
86
|
-
$retryable: {
|
|
87
|
-
throttling: boolean;
|
|
88
|
-
};
|
|
89
|
-
constructor(
|
|
90
|
-
opts: __ExceptionOptionType<ThrottlingException, __BaseException>
|
|
91
|
-
);
|
|
92
|
-
}
|
|
93
|
-
export declare class ValidationException extends __BaseException {
|
|
94
|
-
readonly name: "ValidationException";
|
|
95
|
-
readonly $fault: "client";
|
|
96
|
-
constructor(
|
|
97
|
-
opts: __ExceptionOptionType<ValidationException, __BaseException>
|
|
98
|
-
);
|
|
99
|
-
}
|
|
100
130
|
export interface GetAnnotationImportRequest {
|
|
101
131
|
jobId: string | undefined;
|
|
102
132
|
}
|
|
@@ -157,6 +187,7 @@ export interface GetAnnotationImportResponse {
|
|
|
157
187
|
items: AnnotationImportItemDetail[] | undefined;
|
|
158
188
|
runLeftNormalization: boolean | undefined;
|
|
159
189
|
formatOptions: FormatOptions | undefined;
|
|
190
|
+
annotationFields?: Record<string, string>;
|
|
160
191
|
}
|
|
161
192
|
export interface ListAnnotationImportJobsFilter {
|
|
162
193
|
status?: JobStatus | string;
|
|
@@ -177,24 +208,19 @@ export interface AnnotationImportJobItem {
|
|
|
177
208
|
updateTime: Date | undefined;
|
|
178
209
|
completionTime?: Date;
|
|
179
210
|
runLeftNormalization?: boolean;
|
|
211
|
+
annotationFields?: Record<string, string>;
|
|
180
212
|
}
|
|
181
213
|
export interface ListAnnotationImportJobsResponse {
|
|
182
214
|
annotationImportJobs?: AnnotationImportJobItem[];
|
|
183
215
|
nextToken?: string;
|
|
184
216
|
}
|
|
185
|
-
export declare class ServiceQuotaExceededException extends __BaseException {
|
|
186
|
-
readonly name: "ServiceQuotaExceededException";
|
|
187
|
-
readonly $fault: "client";
|
|
188
|
-
constructor(
|
|
189
|
-
opts: __ExceptionOptionType<ServiceQuotaExceededException, __BaseException>
|
|
190
|
-
);
|
|
191
|
-
}
|
|
192
217
|
export interface StartAnnotationImportRequest {
|
|
193
218
|
destinationName: string | undefined;
|
|
194
219
|
roleArn: string | undefined;
|
|
195
220
|
items: AnnotationImportItemSource[] | undefined;
|
|
196
221
|
formatOptions?: FormatOptions;
|
|
197
222
|
runLeftNormalization?: boolean;
|
|
223
|
+
annotationFields?: Record<string, string>;
|
|
198
224
|
}
|
|
199
225
|
export interface StartAnnotationImportResponse {
|
|
200
226
|
jobId: string | undefined;
|
|
@@ -397,13 +423,6 @@ export interface ReadSetBatchError {
|
|
|
397
423
|
export interface BatchDeleteReadSetResponse {
|
|
398
424
|
errors?: ReadSetBatchError[];
|
|
399
425
|
}
|
|
400
|
-
export declare class RequestTimeoutException extends __BaseException {
|
|
401
|
-
readonly name: "RequestTimeoutException";
|
|
402
|
-
readonly $fault: "client";
|
|
403
|
-
constructor(
|
|
404
|
-
opts: __ExceptionOptionType<RequestTimeoutException, __BaseException>
|
|
405
|
-
);
|
|
406
|
-
}
|
|
407
426
|
export interface CancelRunRequest {
|
|
408
427
|
id: string | undefined;
|
|
409
428
|
}
|
|
@@ -411,6 +430,56 @@ export interface CancelVariantImportRequest {
|
|
|
411
430
|
jobId: string | undefined;
|
|
412
431
|
}
|
|
413
432
|
export interface CancelVariantImportResponse {}
|
|
433
|
+
export declare const ReadSetPartSource: {
|
|
434
|
+
readonly SOURCE1: "SOURCE1";
|
|
435
|
+
readonly SOURCE2: "SOURCE2";
|
|
436
|
+
};
|
|
437
|
+
export type ReadSetPartSource =
|
|
438
|
+
(typeof ReadSetPartSource)[keyof typeof ReadSetPartSource];
|
|
439
|
+
export interface CompleteReadSetUploadPartListItem {
|
|
440
|
+
partNumber: number | undefined;
|
|
441
|
+
partSource: ReadSetPartSource | string | undefined;
|
|
442
|
+
checksum: string | undefined;
|
|
443
|
+
}
|
|
444
|
+
export interface CompleteMultipartReadSetUploadRequest {
|
|
445
|
+
sequenceStoreId: string | undefined;
|
|
446
|
+
uploadId: string | undefined;
|
|
447
|
+
parts: CompleteReadSetUploadPartListItem[] | undefined;
|
|
448
|
+
}
|
|
449
|
+
export interface CompleteMultipartReadSetUploadResponse {
|
|
450
|
+
readSetId: string | undefined;
|
|
451
|
+
}
|
|
452
|
+
export declare const FileType: {
|
|
453
|
+
readonly BAM: "BAM";
|
|
454
|
+
readonly CRAM: "CRAM";
|
|
455
|
+
readonly FASTQ: "FASTQ";
|
|
456
|
+
};
|
|
457
|
+
export type FileType = (typeof FileType)[keyof typeof FileType];
|
|
458
|
+
export interface CreateMultipartReadSetUploadRequest {
|
|
459
|
+
sequenceStoreId: string | undefined;
|
|
460
|
+
clientToken?: string;
|
|
461
|
+
sourceFileType: FileType | string | undefined;
|
|
462
|
+
subjectId: string | undefined;
|
|
463
|
+
sampleId: string | undefined;
|
|
464
|
+
generatedFrom?: string;
|
|
465
|
+
referenceArn: string | undefined;
|
|
466
|
+
name: string | undefined;
|
|
467
|
+
description?: string;
|
|
468
|
+
tags?: Record<string, string>;
|
|
469
|
+
}
|
|
470
|
+
export interface CreateMultipartReadSetUploadResponse {
|
|
471
|
+
sequenceStoreId: string | undefined;
|
|
472
|
+
uploadId: string | undefined;
|
|
473
|
+
sourceFileType: FileType | string | undefined;
|
|
474
|
+
subjectId: string | undefined;
|
|
475
|
+
sampleId: string | undefined;
|
|
476
|
+
generatedFrom?: string;
|
|
477
|
+
referenceArn: string | undefined;
|
|
478
|
+
name?: string;
|
|
479
|
+
description?: string;
|
|
480
|
+
tags?: Record<string, string>;
|
|
481
|
+
creationTime: Date | undefined;
|
|
482
|
+
}
|
|
414
483
|
export interface CreateReferenceStoreRequest {
|
|
415
484
|
name: string | undefined;
|
|
416
485
|
description?: string;
|
|
@@ -433,6 +502,7 @@ export interface CreateRunGroupRequest {
|
|
|
433
502
|
maxDuration?: number;
|
|
434
503
|
tags?: Record<string, string>;
|
|
435
504
|
requestId?: string;
|
|
505
|
+
maxGpus?: number;
|
|
436
506
|
}
|
|
437
507
|
export interface CreateRunGroupResponse {
|
|
438
508
|
arn?: string;
|
|
@@ -445,6 +515,7 @@ export interface CreateSequenceStoreRequest {
|
|
|
445
515
|
sseConfig?: SseConfig;
|
|
446
516
|
tags?: Record<string, string>;
|
|
447
517
|
clientToken?: string;
|
|
518
|
+
fallbackLocation?: string;
|
|
448
519
|
}
|
|
449
520
|
export interface CreateSequenceStoreResponse {
|
|
450
521
|
id: string | undefined;
|
|
@@ -453,6 +524,7 @@ export interface CreateSequenceStoreResponse {
|
|
|
453
524
|
description?: string;
|
|
454
525
|
sseConfig?: SseConfig;
|
|
455
526
|
creationTime: Date | undefined;
|
|
527
|
+
fallbackLocation?: string;
|
|
456
528
|
}
|
|
457
529
|
export interface CreateVariantStoreRequest {
|
|
458
530
|
reference: ReferenceItem | undefined;
|
|
@@ -489,12 +561,14 @@ export interface CreateWorkflowRequest {
|
|
|
489
561
|
storageCapacity?: number;
|
|
490
562
|
tags?: Record<string, string>;
|
|
491
563
|
requestId?: string;
|
|
564
|
+
accelerators?: Accelerators | string;
|
|
492
565
|
}
|
|
493
566
|
export declare const WorkflowStatus: {
|
|
494
567
|
readonly ACTIVE: "ACTIVE";
|
|
495
568
|
readonly CREATING: "CREATING";
|
|
496
569
|
readonly DELETED: "DELETED";
|
|
497
570
|
readonly FAILED: "FAILED";
|
|
571
|
+
readonly INACTIVE: "INACTIVE";
|
|
498
572
|
readonly UPDATING: "UPDATING";
|
|
499
573
|
};
|
|
500
574
|
export type WorkflowStatus =
|
|
@@ -579,12 +653,6 @@ export interface FileInformation {
|
|
|
579
653
|
partSize?: number;
|
|
580
654
|
contentLength?: number;
|
|
581
655
|
}
|
|
582
|
-
export declare const FileType: {
|
|
583
|
-
readonly BAM: "BAM";
|
|
584
|
-
readonly CRAM: "CRAM";
|
|
585
|
-
readonly FASTQ: "FASTQ";
|
|
586
|
-
};
|
|
587
|
-
export type FileType = (typeof FileType)[keyof typeof FileType];
|
|
588
656
|
export declare const ReadSetFile: {
|
|
589
657
|
readonly INDEX: "INDEX";
|
|
590
658
|
readonly SOURCE1: "SOURCE1";
|
|
@@ -706,6 +774,8 @@ export declare const ReadSetStatus: {
|
|
|
706
774
|
readonly ARCHIVED: "ARCHIVED";
|
|
707
775
|
readonly DELETED: "DELETED";
|
|
708
776
|
readonly DELETING: "DELETING";
|
|
777
|
+
readonly PROCESSING_UPLOAD: "PROCESSING_UPLOAD";
|
|
778
|
+
readonly UPLOAD_FAILED: "UPLOAD_FAILED";
|
|
709
779
|
};
|
|
710
780
|
export type ReadSetStatus = (typeof ReadSetStatus)[keyof typeof ReadSetStatus];
|
|
711
781
|
export interface GetReadSetMetadataResponse {
|
|
@@ -722,6 +792,7 @@ export interface GetReadSetMetadataResponse {
|
|
|
722
792
|
sequenceInformation?: SequenceInformation;
|
|
723
793
|
referenceArn?: string;
|
|
724
794
|
files?: ReadSetFiles;
|
|
795
|
+
statusMessage?: string;
|
|
725
796
|
}
|
|
726
797
|
export declare const ReferenceFile: {
|
|
727
798
|
readonly INDEX: "INDEX";
|
|
@@ -845,6 +916,7 @@ export declare const RunStatus: {
|
|
|
845
916
|
export type RunStatus = (typeof RunStatus)[keyof typeof RunStatus];
|
|
846
917
|
export declare const WorkflowType: {
|
|
847
918
|
readonly PRIVATE: "PRIVATE";
|
|
919
|
+
readonly READY2RUN: "READY2RUN";
|
|
848
920
|
};
|
|
849
921
|
export type WorkflowType = (typeof WorkflowType)[keyof typeof WorkflowType];
|
|
850
922
|
export interface GetRunResponse {
|
|
@@ -871,6 +943,7 @@ export interface GetRunResponse {
|
|
|
871
943
|
stopTime?: Date;
|
|
872
944
|
statusMessage?: string;
|
|
873
945
|
tags?: Record<string, string>;
|
|
946
|
+
accelerators?: Accelerators | string;
|
|
874
947
|
}
|
|
875
948
|
export interface GetRunGroupRequest {
|
|
876
949
|
id: string | undefined;
|
|
@@ -884,6 +957,7 @@ export interface GetRunGroupResponse {
|
|
|
884
957
|
maxDuration?: number;
|
|
885
958
|
creationTime?: Date;
|
|
886
959
|
tags?: Record<string, string>;
|
|
960
|
+
maxGpus?: number;
|
|
887
961
|
}
|
|
888
962
|
export interface GetRunTaskRequest {
|
|
889
963
|
id: string | undefined;
|
|
@@ -910,6 +984,7 @@ export interface GetRunTaskResponse {
|
|
|
910
984
|
stopTime?: Date;
|
|
911
985
|
statusMessage?: string;
|
|
912
986
|
logStream?: string;
|
|
987
|
+
gpus?: number;
|
|
913
988
|
}
|
|
914
989
|
export interface GetSequenceStoreRequest {
|
|
915
990
|
id: string | undefined;
|
|
@@ -921,6 +996,7 @@ export interface GetSequenceStoreResponse {
|
|
|
921
996
|
description?: string;
|
|
922
997
|
sseConfig?: SseConfig;
|
|
923
998
|
creationTime: Date | undefined;
|
|
999
|
+
fallbackLocation?: string;
|
|
924
1000
|
}
|
|
925
1001
|
export interface GetVariantImportRequest {
|
|
926
1002
|
jobId: string | undefined;
|
|
@@ -941,6 +1017,7 @@ export interface GetVariantImportResponse {
|
|
|
941
1017
|
completionTime?: Date;
|
|
942
1018
|
items: VariantImportItemDetail[] | undefined;
|
|
943
1019
|
runLeftNormalization: boolean | undefined;
|
|
1020
|
+
annotationFields?: Record<string, string>;
|
|
944
1021
|
}
|
|
945
1022
|
export interface GetVariantStoreRequest {
|
|
946
1023
|
name: string | undefined;
|
|
@@ -985,6 +1062,8 @@ export interface GetWorkflowResponse {
|
|
|
985
1062
|
creationTime?: Date;
|
|
986
1063
|
statusMessage?: string;
|
|
987
1064
|
tags?: Record<string, string>;
|
|
1065
|
+
metadata?: Record<string, string>;
|
|
1066
|
+
accelerators?: Accelerators | string;
|
|
988
1067
|
}
|
|
989
1068
|
export interface ImportReadSetFilter {
|
|
990
1069
|
status?: ReadSetImportJobStatus | string;
|
|
@@ -1012,6 +1091,28 @@ export interface ImportReferenceJobItem {
|
|
|
1012
1091
|
creationTime: Date | undefined;
|
|
1013
1092
|
completionTime?: Date;
|
|
1014
1093
|
}
|
|
1094
|
+
export interface ListMultipartReadSetUploadsRequest {
|
|
1095
|
+
sequenceStoreId: string | undefined;
|
|
1096
|
+
maxResults?: number;
|
|
1097
|
+
nextToken?: string;
|
|
1098
|
+
}
|
|
1099
|
+
export interface MultipartReadSetUploadListItem {
|
|
1100
|
+
sequenceStoreId: string | undefined;
|
|
1101
|
+
uploadId: string | undefined;
|
|
1102
|
+
sourceFileType: FileType | string | undefined;
|
|
1103
|
+
subjectId: string | undefined;
|
|
1104
|
+
sampleId: string | undefined;
|
|
1105
|
+
generatedFrom: string | undefined;
|
|
1106
|
+
referenceArn: string | undefined;
|
|
1107
|
+
name?: string;
|
|
1108
|
+
description?: string;
|
|
1109
|
+
tags?: Record<string, string>;
|
|
1110
|
+
creationTime: Date | undefined;
|
|
1111
|
+
}
|
|
1112
|
+
export interface ListMultipartReadSetUploadsResponse {
|
|
1113
|
+
nextToken?: string;
|
|
1114
|
+
uploads?: MultipartReadSetUploadListItem[];
|
|
1115
|
+
}
|
|
1015
1116
|
export interface ListReadSetActivationJobsRequest {
|
|
1016
1117
|
sequenceStoreId: string | undefined;
|
|
1017
1118
|
maxResults?: number;
|
|
@@ -1048,6 +1149,9 @@ export interface ReadSetFilter {
|
|
|
1048
1149
|
referenceArn?: string;
|
|
1049
1150
|
createdAfter?: Date;
|
|
1050
1151
|
createdBefore?: Date;
|
|
1152
|
+
sampleId?: string;
|
|
1153
|
+
subjectId?: string;
|
|
1154
|
+
generatedFrom?: string;
|
|
1051
1155
|
}
|
|
1052
1156
|
export interface ListReadSetsRequest {
|
|
1053
1157
|
sequenceStoreId: string | undefined;
|
|
@@ -1068,11 +1172,36 @@ export interface ReadSetListItem {
|
|
|
1068
1172
|
fileType: FileType | string | undefined;
|
|
1069
1173
|
sequenceInformation?: SequenceInformation;
|
|
1070
1174
|
creationTime: Date | undefined;
|
|
1175
|
+
statusMessage?: string;
|
|
1071
1176
|
}
|
|
1072
1177
|
export interface ListReadSetsResponse {
|
|
1073
1178
|
nextToken?: string;
|
|
1074
1179
|
readSets: ReadSetListItem[] | undefined;
|
|
1075
1180
|
}
|
|
1181
|
+
export interface ReadSetUploadPartListFilter {
|
|
1182
|
+
createdAfter?: Date;
|
|
1183
|
+
createdBefore?: Date;
|
|
1184
|
+
}
|
|
1185
|
+
export interface ListReadSetUploadPartsRequest {
|
|
1186
|
+
sequenceStoreId: string | undefined;
|
|
1187
|
+
uploadId: string | undefined;
|
|
1188
|
+
partSource: ReadSetPartSource | string | undefined;
|
|
1189
|
+
maxResults?: number;
|
|
1190
|
+
nextToken?: string;
|
|
1191
|
+
filter?: ReadSetUploadPartListFilter;
|
|
1192
|
+
}
|
|
1193
|
+
export interface ReadSetUploadPartListItem {
|
|
1194
|
+
partNumber: number | undefined;
|
|
1195
|
+
partSize: number | undefined;
|
|
1196
|
+
partSource: ReadSetPartSource | string | undefined;
|
|
1197
|
+
checksum: string | undefined;
|
|
1198
|
+
creationTime?: Date;
|
|
1199
|
+
lastUpdatedTime?: Date;
|
|
1200
|
+
}
|
|
1201
|
+
export interface ListReadSetUploadPartsResponse {
|
|
1202
|
+
nextToken?: string;
|
|
1203
|
+
parts?: ReadSetUploadPartListItem[];
|
|
1204
|
+
}
|
|
1076
1205
|
export interface ListReferenceImportJobsRequest {
|
|
1077
1206
|
maxResults?: number;
|
|
1078
1207
|
nextToken?: string;
|
|
@@ -1145,6 +1274,7 @@ export interface RunGroupListItem {
|
|
|
1145
1274
|
maxRuns?: number;
|
|
1146
1275
|
maxDuration?: number;
|
|
1147
1276
|
creationTime?: Date;
|
|
1277
|
+
maxGpus?: number;
|
|
1148
1278
|
}
|
|
1149
1279
|
export interface ListRunGroupsResponse {
|
|
1150
1280
|
items?: RunGroupListItem[];
|
|
@@ -1155,6 +1285,7 @@ export interface ListRunsRequest {
|
|
|
1155
1285
|
runGroupId?: string;
|
|
1156
1286
|
startingToken?: string;
|
|
1157
1287
|
maxResults?: number;
|
|
1288
|
+
status?: RunStatus | string;
|
|
1158
1289
|
}
|
|
1159
1290
|
export interface RunListItem {
|
|
1160
1291
|
arn?: string;
|
|
@@ -1187,6 +1318,7 @@ export interface TaskListItem {
|
|
|
1187
1318
|
creationTime?: Date;
|
|
1188
1319
|
startTime?: Date;
|
|
1189
1320
|
stopTime?: Date;
|
|
1321
|
+
gpus?: number;
|
|
1190
1322
|
}
|
|
1191
1323
|
export interface ListRunTasksResponse {
|
|
1192
1324
|
items?: TaskListItem[];
|
|
@@ -1209,6 +1341,7 @@ export interface SequenceStoreDetail {
|
|
|
1209
1341
|
description?: string;
|
|
1210
1342
|
sseConfig?: SseConfig;
|
|
1211
1343
|
creationTime: Date | undefined;
|
|
1344
|
+
fallbackLocation?: string;
|
|
1212
1345
|
}
|
|
1213
1346
|
export interface ListSequenceStoresResponse {
|
|
1214
1347
|
nextToken?: string;
|
|
@@ -1239,6 +1372,7 @@ export interface VariantImportJobItem {
|
|
|
1239
1372
|
updateTime: Date | undefined;
|
|
1240
1373
|
completionTime?: Date;
|
|
1241
1374
|
runLeftNormalization?: boolean;
|
|
1375
|
+
annotationFields?: Record<string, string>;
|
|
1242
1376
|
}
|
|
1243
1377
|
export interface ListVariantImportJobsResponse {
|
|
1244
1378
|
variantImportJobs?: VariantImportJobItem[];
|
|
@@ -1284,6 +1418,7 @@ export interface WorkflowListItem {
|
|
|
1284
1418
|
type?: WorkflowType | string;
|
|
1285
1419
|
digest?: string;
|
|
1286
1420
|
creationTime?: Date;
|
|
1421
|
+
metadata?: Record<string, string>;
|
|
1287
1422
|
}
|
|
1288
1423
|
export interface ListWorkflowsResponse {
|
|
1289
1424
|
items?: WorkflowListItem[];
|
|
@@ -1314,6 +1449,7 @@ export interface UpdateRunGroupRequest {
|
|
|
1314
1449
|
maxCpus?: number;
|
|
1315
1450
|
maxRuns?: number;
|
|
1316
1451
|
maxDuration?: number;
|
|
1452
|
+
maxGpus?: number;
|
|
1317
1453
|
}
|
|
1318
1454
|
export interface StartRunRequest {
|
|
1319
1455
|
workflowId?: string;
|
|
@@ -1388,6 +1524,16 @@ export interface StartReadSetImportJobResponse {
|
|
|
1388
1524
|
status: ReadSetImportJobStatus | string | undefined;
|
|
1389
1525
|
creationTime: Date | undefined;
|
|
1390
1526
|
}
|
|
1527
|
+
export interface UploadReadSetPartRequest {
|
|
1528
|
+
sequenceStoreId: string | undefined;
|
|
1529
|
+
uploadId: string | undefined;
|
|
1530
|
+
partSource: ReadSetPartSource | string | undefined;
|
|
1531
|
+
partNumber: number | undefined;
|
|
1532
|
+
payload: Readable | ReadableStream | Blob | undefined;
|
|
1533
|
+
}
|
|
1534
|
+
export interface UploadReadSetPartResponse {
|
|
1535
|
+
checksum: string | undefined;
|
|
1536
|
+
}
|
|
1391
1537
|
export interface TagResourceRequest {
|
|
1392
1538
|
resourceArn: string | undefined;
|
|
1393
1539
|
tags: Record<string, string> | undefined;
|
|
@@ -1406,6 +1552,7 @@ export interface StartVariantImportRequest {
|
|
|
1406
1552
|
roleArn: string | undefined;
|
|
1407
1553
|
items: VariantImportItemSource[] | undefined;
|
|
1408
1554
|
runLeftNormalization?: boolean;
|
|
1555
|
+
annotationFields?: Record<string, string>;
|
|
1409
1556
|
}
|
|
1410
1557
|
export interface StartVariantImportResponse {
|
|
1411
1558
|
jobId: string | undefined;
|
|
@@ -1434,3 +1581,6 @@ export declare const GetReadSetResponseFilterSensitiveLog: (
|
|
|
1434
1581
|
export declare const GetReferenceResponseFilterSensitiveLog: (
|
|
1435
1582
|
obj: GetReferenceResponse
|
|
1436
1583
|
) => any;
|
|
1584
|
+
export declare const UploadReadSetPartRequestFilterSensitiveLog: (
|
|
1585
|
+
obj: UploadReadSetPartRequest
|
|
1586
|
+
) => any;
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
import { Paginator } from "@aws-sdk/types";
|
|
2
|
+
import {
|
|
3
|
+
ListMultipartReadSetUploadsCommandInput,
|
|
4
|
+
ListMultipartReadSetUploadsCommandOutput,
|
|
5
|
+
} from "../commands/ListMultipartReadSetUploadsCommand";
|
|
6
|
+
import { OmicsPaginationConfiguration } from "./Interfaces";
|
|
7
|
+
export declare function paginateListMultipartReadSetUploads(
|
|
8
|
+
config: OmicsPaginationConfiguration,
|
|
9
|
+
input: ListMultipartReadSetUploadsCommandInput,
|
|
10
|
+
...additionalArguments: any
|
|
11
|
+
): Paginator<ListMultipartReadSetUploadsCommandOutput>;
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
import { Paginator } from "@aws-sdk/types";
|
|
2
|
+
import {
|
|
3
|
+
ListReadSetUploadPartsCommandInput,
|
|
4
|
+
ListReadSetUploadPartsCommandOutput,
|
|
5
|
+
} from "../commands/ListReadSetUploadPartsCommand";
|
|
6
|
+
import { OmicsPaginationConfiguration } from "./Interfaces";
|
|
7
|
+
export declare function paginateListReadSetUploadParts(
|
|
8
|
+
config: OmicsPaginationConfiguration,
|
|
9
|
+
input: ListReadSetUploadPartsCommandInput,
|
|
10
|
+
...additionalArguments: any
|
|
11
|
+
): Paginator<ListReadSetUploadPartsCommandOutput>;
|
|
@@ -1,9 +1,11 @@
|
|
|
1
1
|
export * from "./Interfaces";
|
|
2
2
|
export * from "./ListAnnotationImportJobsPaginator";
|
|
3
3
|
export * from "./ListAnnotationStoresPaginator";
|
|
4
|
+
export * from "./ListMultipartReadSetUploadsPaginator";
|
|
4
5
|
export * from "./ListReadSetActivationJobsPaginator";
|
|
5
6
|
export * from "./ListReadSetExportJobsPaginator";
|
|
6
7
|
export * from "./ListReadSetImportJobsPaginator";
|
|
8
|
+
export * from "./ListReadSetUploadPartsPaginator";
|
|
7
9
|
export * from "./ListReadSetsPaginator";
|
|
8
10
|
export * from "./ListReferenceImportJobsPaginator";
|
|
9
11
|
export * from "./ListReferenceStoresPaginator";
|