@aquex/cmos-mcp 1.0.0

package/dist/errors/validation-error.js

@@ -0,0 +1,19 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ValidationError = void 0;
+const mission_error_1 = require("./mission-error");
+class ValidationError extends mission_error_1.MissionProtocolError {
+    constructor(message, options = {}) {
+        super({
+            message,
+            code: options.code ?? 'VALIDATION_INVALID_INPUT',
+            category: 'validation',
+            severity: options.severity ?? 'error',
+            context: options.context,
+            cause: options.cause,
+            retryable: options.retryable ?? false,
+        });
+    }
+}
+exports.ValidationError = ValidationError;
+//# sourceMappingURL=validation-error.js.map

package/dist/errors/validation-error.js.map

@@ -0,0 +1 @@
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package/dist/extraction/template-extractor.d.ts

@@ -0,0 +1,59 @@
+/**
+ * Template Extractor - Three-Stage Hybrid Extraction Algorithm
+ *
+ * Implements the algorithm defined in research mission R3.1:
+ * 1. Stage 1: Automated Candidate Identification
+ * 2. Stage 2: Automated Parameterization & Logic Inference
+ * 3. Stage 3: Human-in-the-Loop Refinement (handled by separate UI/tool)
+ */
+import { CandidateMap, TemplateMetadata, TemplateParameter, ExtractionConfig, Stage1Result, Stage2Result, ExtractionResult } from './types';
+export declare class TemplateExtractor {
+    private config;
+    private stage1StartTime;
+    private stage2StartTime;
+    constructor(config: ExtractionConfig);
+    /**
+     * Main entry point for the extraction process
+     */
+    extract(): Promise<ExtractionResult>;
+    /**
+     * Stage 1: Automated Candidate Identification
+     *
+     * Analyzes the source mission to identify potential parameters using:
+     * - Literal differencing & frequency analysis
+     * - Structural hashing and clone detection (AST-based)
+     */
+    identifyCandidates(missionPath: string): Promise<Stage1Result>;
+    /**
+     * Stage 2: Automated Parameterization & Logic Inference
+     *
+     * Transforms candidates into a structured template with:
+     * - Rule-based parameter generation
+     * - Conditional block inference
+     */
+    generateTemplate(candidates: CandidateMap): Promise<Stage2Result>;
+    /**
+     * Extract metadata for template catalog
+     */
+    extractMetadata(parameters: Record<string, TemplateParameter>, sourcePath: string): Promise<TemplateMetadata>;
+    private getAllFiles;
+    private shouldExcludeFile;
+    private isConfigFile;
+    private isCodeFile;
+    private analyzeConfigFile;
+    private extractConfigValues;
+    private analyzeCodeFile;
+    private analyzeFilePath;
+    private calculateConfidence;
+    private suggestParameterName;
+    private generateParameter;
+    private generateTemplateId;
+    private generateTemplateName;
+    private generateTags;
+    private isCommonKeyword;
+    private isCommonDirectoryName;
+    private buildPathSegmentReplacements;
+    private buildContentReplacementsByFile;
+    private escapeRegex;
+}
+//# sourceMappingURL=template-extractor.d.ts.map

package/dist/extraction/template-extractor.d.ts.map

@@ -0,0 +1 @@
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package/dist/extraction/template-extractor.js

@@ -0,0 +1,553 @@
+"use strict";
+/**
+ * Template Extractor - Three-Stage Hybrid Extraction Algorithm
+ *
+ * Implements the algorithm defined in research mission R3.1:
+ * 1. Stage 1: Automated Candidate Identification
+ * 2. Stage 2: Automated Parameterization & Logic Inference
+ * 3. Stage 3: Human-in-the-Loop Refinement (handled by separate UI/tool)
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.TemplateExtractor = void 0;
+const fs_1 = require("fs");
+const path = __importStar(require("path"));
+const yaml = __importStar(require("yaml"));
+const common_1 = require("../validation/common");
+const fs_2 = require("../utils/fs");
+const MAX_CONFIG_SIZE_BYTES = 512 * 1024;
+class TemplateExtractor {
+    constructor(config) {
+        this.stage1StartTime = 0;
+        this.stage2StartTime = 0;
+        this.config = {
+            confidenceThreshold: 0.6,
+            enableASTAnalysis: true,
+            excludePatterns: ['node_modules/**', '.git/**', 'dist/**', 'build/**', '*.log'],
+            ...config,
+        };
+    }
+    /**
+     * Main entry point for the extraction process
+     */
+    async extract() {
+        const totalStartTime = performance.now();
+        const errors = [];
+        try {
+            // Validate source mission exists
+            if (!(await (0, fs_2.pathExists)(this.config.sourceMissionPath))) {
+                throw new Error(`Source mission path does not exist: ${this.config.sourceMissionPath}`);
+            }
+            // Stage 1: Identify candidates
+            const stage1Result = await this.identifyCandidates(this.config.sourceMissionPath);
+            // Stage 2: Generate template
+            const stage2Result = await this.generateTemplate(stage1Result.candidates);
+            const totalTime = Math.round(performance.now() - totalStartTime);
+            return {
+                success: true,
+                template: stage2Result.template,
+                stage1: stage1Result,
+                stage2: stage2Result,
+                totalTime,
+            };
+        }
+        catch (_error) {
+            const message = _error instanceof Error ? _error.message : String(_error);
+            errors.push(message);
+            return {
+                success: false,
+                errors,
+                totalTime: Math.round(performance.now() - totalStartTime),
+            };
+        }
+    }
+    /**
+     * Stage 1: Automated Candidate Identification
+     *
+     * Analyzes the source mission to identify potential parameters using:
+     * - Literal differencing & frequency analysis
+     * - Structural hashing and clone detection (AST-based)
+     */
+    async identifyCandidates(missionPath) {
+        this.stage1StartTime = performance.now();
+        const candidates = {};
+        let filesAnalyzed = 0;
+        // Get all files in the mission
+        const files = await this.getAllFiles(missionPath);
+        // Track literal frequencies across all files
+        const literalFrequency = new Map();
+        const literalLocations = new Map();
+        const fileAnalysisTasks = files.map((filePath) => async () => {
+            if (this.shouldExcludeFile(filePath)) {
+                return;
+            }
+            filesAnalyzed++;
+            const content = await fs_1.promises.readFile(filePath, 'utf-8');
+            const relativePath = path.relative(missionPath, filePath);
+            if (this.isConfigFile(filePath)) {
+                await this.analyzeConfigFile(filePath, relativePath, content, literalFrequency, literalLocations);
+            }
+            else if (this.isCodeFile(filePath)) {
+                await this.analyzeCodeFile(filePath, relativePath, content, literalFrequency, literalLocations);
+            }
+            this.analyzeFilePath(filePath, relativePath, literalFrequency, literalLocations);
+        });
+        if (fileAnalysisTasks.length > 0) {
+            await (0, fs_2.runWithConcurrency)(fileAnalysisTasks, Math.min(8, fileAnalysisTasks.length));
+        }
+        // Calculate confidence scores based on frequency
+        for (const [literal, locations] of literalLocations) {
+            const frequency = literalFrequency.get(literal) || 0;
+            const confidence = this.calculateConfidence(frequency, locations.length, filesAnalyzed);
+            // Only include candidates above threshold
+            if (confidence >= (this.config.confidenceThreshold || 0.6)) {
+                const paramName = this.suggestParameterName(literal, locations[0]);
+                if (!candidates[paramName]) {
+                    candidates[paramName] = [];
+                }
+                candidates[paramName].push(...locations.map((loc) => ({
+                    ...loc,
+                    frequency,
+                    confidence,
+                })));
+            }
+        }
+        // If no candidates found, lower threshold to ensure we get some results
+        if (Object.keys(candidates).length === 0 && literalLocations.size > 0) {
+            for (const [literal, locations] of literalLocations) {
+                const frequency = literalFrequency.get(literal) || 0;
+                const confidence = this.calculateConfidence(frequency, locations.length, filesAnalyzed);
+                const paramName = this.suggestParameterName(literal, locations[0]);
+                if (!candidates[paramName]) {
+                    candidates[paramName] = [];
+                }
+                candidates[paramName].push(...locations.map((loc) => ({
+                    ...loc,
+                    frequency,
+                    confidence,
+                })));
+            }
+        }
+        const rawDuration = Math.round(performance.now() - this.stage1StartTime);
+        const executionTime = filesAnalyzed > 0 ? Math.max(1, rawDuration) : rawDuration;
+        return {
+            candidates,
+            executionTime,
+            filesAnalyzed,
+        };
+    }
+    /**
+     * Stage 2: Automated Parameterization & Logic Inference
+     *
+     * Transforms candidates into a structured template with:
+     * - Rule-based parameter generation
+     * - Conditional block inference
+     */
+    async generateTemplate(candidates) {
+        this.stage2StartTime = performance.now();
+        const parameters = {};
+        const fileStructure = [];
+        // Generate parameters from candidates
+        let parametersGenerated = 0;
+        for (const [paramName, candidateList] of Object.entries(candidates)) {
+            const param = this.generateParameter(paramName, candidateList);
+            parameters[paramName] = param;
+            parametersGenerated++;
+        }
+        // Process all files and apply parameterization
+        const files = await this.getAllFiles(this.config.sourceMissionPath);
+        const pathSegmentReplacements = this.buildPathSegmentReplacements(candidates);
+        const contentReplacements = this.buildContentReplacementsByFile(candidates);
+        const processedFiles = await (0, fs_2.runWithConcurrency)(files.map((filePath) => async () => {
+            if (this.shouldExcludeFile(filePath)) {
+                return null;
+            }
+            const relativePath = path.relative(this.config.sourceMissionPath, filePath);
+            let content = await fs_1.promises.readFile(filePath, 'utf-8');
+            let templatePath = relativePath;
+            if (pathSegmentReplacements.length > 0) {
+                for (const { search, replacement } of pathSegmentReplacements) {
+                    if (templatePath.includes(search)) {
+                        templatePath = templatePath.split(search).join(replacement);
+                    }
+                }
+            }
+            const replacementsForFile = contentReplacements.get(relativePath);
+            if (replacementsForFile) {
+                for (const { regex, replacement } of replacementsForFile) {
+                    content = content.replace(regex, replacement);
+                }
+            }
+            return {
+                path: templatePath,
+                content,
+            };
+        }), Math.min(8, files.length || 1));
+        for (const file of processedFiles) {
+            if (file) {
+                fileStructure.push(file);
+            }
+        }
+        // Generate metadata
+        const metadata = await this.extractMetadata(parameters, this.config.sourceMissionPath);
+        const template = {
+            fileStructure,
+            metadata,
+        };
+        const rawDuration = Math.round(performance.now() - this.stage2StartTime);
+        const executionTime = files.length > 0 ? Math.max(1, rawDuration) : rawDuration;
+        return {
+            template,
+            executionTime,
+            parametersGenerated,
+        };
+    }
+    /**
+     * Extract metadata for template catalog
+     */
+    async extractMetadata(parameters, sourcePath) {
+        const missionName = path.basename(sourcePath);
+        const templateId = this.generateTemplateId(missionName);
+        const now = new Date().toISOString();
+        return {
+            templateId,
+            templateVersion: '1.0.0',
+            name: this.generateTemplateName(missionName),
+            description: `Template extracted from ${missionName}`,
+            author: this.config.author,
+            tags: await this.generateTags(sourcePath),
+            parameters,
+            sourceMissionId: missionName,
+            creationDate: now,
+            lastUpdatedDate: now,
+            usageCount: 0,
+            generatedSuccessRate: 0,
+        };
+    }
+    // === Private Helper Methods ===
+    async getAllFiles(dir, fileList = []) {
+        const entries = await fs_1.promises.readdir(dir, { withFileTypes: true });
+        for (const entry of entries) {
+            const filePath = path.join(dir, entry.name);
+            if (entry.isDirectory()) {
+                await this.getAllFiles(filePath, fileList);
+            }
+            else {
+                fileList.push(filePath);
+            }
+        }
+        return fileList;
+    }
+    shouldExcludeFile(filePath) {
+        const patterns = this.config.excludePatterns || [];
+        return patterns.some((pattern) => {
+            const regex = new RegExp(pattern.replace('**', '.*').replace('*', '[^/]*'));
+            return regex.test(filePath);
+        });
+    }
+    isConfigFile(filePath) {
+        const configExtensions = ['.yaml', '.yml', '.json', '.toml', '.properties', '.env'];
+        return configExtensions.some((ext) => filePath.endsWith(ext));
+    }
+    isCodeFile(filePath) {
+        const codeExtensions = ['.ts', '.js', '.py', '.java', '.go', '.rs', '.rb', '.php'];
+        return codeExtensions.some((ext) => filePath.endsWith(ext));
+    }
+    async analyzeConfigFile(filePath, relativePath, content, literalFrequency, literalLocations) {
+        try {
+            let config;
+            if (filePath.endsWith('.json')) {
+                config = (0, common_1.jsonContent)(content, { maxSize: MAX_CONFIG_SIZE_BYTES });
+            }
+            else if (filePath.endsWith('.yaml') || filePath.endsWith('.yml')) {
+                config = yaml.parse(content);
+            }
+            if (config && typeof config === 'object') {
+                this.extractConfigValues(config, relativePath, filePath, literalFrequency, literalLocations);
+            }
+        }
+        catch (_error) {
+            // Skip files that can't be parsed
+        }
+    }
+    extractConfigValues(obj, relativePath, filePath, literalFrequency, literalLocations, keyPath = '') {
+        const metadataKeys = [
+            'name',
+            'version',
+            'author',
+            'email',
+            'description',
+            'host',
+            'port',
+            'title',
+        ];
+        for (const [key, value] of Object.entries(obj)) {
+            const currentPath = keyPath ? `${keyPath}.${key}` : key;
+            if (metadataKeys.includes(key.toLowerCase()) &&
+                (typeof value === 'string' || typeof value === 'number')) {
+                const actualValue = value; // Keep original type
+                const valueStr = String(value);
+                literalFrequency.set(valueStr, (literalFrequency.get(valueStr) || 0) + 1);
+                if (!literalLocations.has(valueStr)) {
+                    literalLocations.set(valueStr, []);
+                }
+                literalLocations.get(valueStr).push({
+                    type: 'config-value',
+                    value: actualValue, // Store original type
+                    filePath: relativePath,
+                    lineNumber: 0, // Would need line-aware parser for exact line
+                    frequency: 0,
+                    confidence: 0,
+                    context: currentPath,
+                });
+            }
+            else if (typeof value === 'object' && value !== null && !Array.isArray(value)) {
+                this.extractConfigValues(value, relativePath, filePath, literalFrequency, literalLocations, currentPath);
+            }
+        }
+    }
+    async analyzeCodeFile(filePath, relativePath, content, literalFrequency, literalLocations) {
+        // Extract string literals
+        const stringLiteralRegex = /["']([^"']+)["']/g;
+        let match;
+        let lineNumber = 1;
+        const lines = content.split('\n');
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i];
+            lineNumber = i + 1;
+            while ((match = stringLiteralRegex.exec(line)) !== null) {
+                const literal = match[1];
+                // Skip common keywords and short strings
+                if (literal.length > 2 && !this.isCommonKeyword(literal)) {
+                    literalFrequency.set(literal, (literalFrequency.get(literal) || 0) + 1);
+                    if (!literalLocations.has(literal)) {
+                        literalLocations.set(literal, []);
+                    }
+                    literalLocations.get(literal).push({
+                        type: 'literal',
+                        value: literal,
+                        filePath: relativePath,
+                        lineNumber,
+                        frequency: 0,
+                        confidence: 0,
+                        context: line.trim(),
+                    });
+                }
+            }
+        }
+    }
+    analyzeFilePath(filePath, relativePath, literalFrequency, literalLocations) {
+        // Extract unique path segments that might be project-specific
+        const segments = relativePath.split(path.sep);
+        for (const segment of segments) {
+            // Skip common directory names
+            if (this.isCommonDirectoryName(segment))
+                continue;
+            // Check if segment looks like a project-specific identifier
+            if (segment.match(/^[a-z][a-z0-9-_]*$/i) && segment.length > 2) {
+                literalFrequency.set(segment, (literalFrequency.get(segment) || 0) + 1);
+                if (!literalLocations.has(segment)) {
+                    literalLocations.set(segment, []);
+                }
+                literalLocations.get(segment).push({
+                    type: 'path-segment',
+                    value: segment,
+                    filePath: relativePath,
+                    lineNumber: 0,
+                    frequency: 0,
+                    confidence: 0,
+                    context: 'file-path',
+                });
+            }
+        }
+    }
+    calculateConfidence(frequency, locationCount, totalFiles) {
+        // Low frequency = likely project-specific = high confidence for parameterization
+        // High frequency = likely boilerplate = low confidence
+        // For small projects (few files), be more lenient
+        const baseThreshold = Math.max(totalFiles, 5);
+        const frequencyScore = Math.max(0, 1 - frequency / baseThreshold);
+        const locationScore = Math.min(1, locationCount / 2); // Multiple locations increase confidence
+        return frequencyScore * 0.6 + locationScore * 0.4;
+    }
+    suggestParameterName(literal, candidate) {
+        // Use context to suggest better parameter names
+        if (candidate.type === 'config-value' && candidate.context) {
+            const parts = candidate.context.split('.').filter((p) => p.length > 0);
+            return parts[parts.length - 1].replace(/[^a-zA-Z0-9_]/g, '_').toLowerCase();
+        }
+        if (candidate.type === 'path-segment') {
+            return 'project_name';
+        }
+        // Generate from literal value
+        return (literal
+            .replace(/[^a-zA-Z0-9]+/g, '_')
+            .replace(/^_+|_+$/g, '')
+            .toLowerCase() || 'param');
+    }
+    generateParameter(paramName, candidates) {
+        // Determine type from candidate values
+        const firstValue = candidates[0].value;
+        let type = 'string';
+        if (typeof firstValue === 'number') {
+            type = 'number';
+        }
+        else if (firstValue === 'true' || firstValue === 'false') {
+            type = 'boolean';
+        }
+        // Use the most common value as default
+        const valueCounts = new Map();
+        for (const candidate of candidates) {
+            const val = candidate.value;
+            valueCounts.set(val, (valueCounts.get(val) || 0) + 1);
+        }
+        const defaultValue = Array.from(valueCounts.entries()).sort((a, b) => b[1] - a[1])[0][0];
+        return {
+            type,
+            description: `Parameter for ${paramName}`,
+            default: defaultValue,
+            required: true,
+        };
+    }
+    generateTemplateId(missionName) {
+        return missionName
+            .toLowerCase()
+            .replace(/[^a-z0-9]+/g, '-')
+            .replace(/^-+|-+$/g, '');
+    }
+    generateTemplateName(missionName) {
+        return missionName
+            .split(/[-_]/)
+            .map((word) => word.charAt(0).toUpperCase() + word.slice(1))
+            .join(' ');
+    }
+    async generateTags(sourcePath) {
+        const tags = [];
+        const baseName = path.basename(sourcePath).toLowerCase();
+        const files = await this.getAllFiles(sourcePath);
+        if (files.some((f) => f.endsWith('.py')))
+            tags.push('python');
+        if (files.some((f) => f.endsWith('.ts') || f.endsWith('.js')))
+            tags.push('typescript', 'javascript');
+        if (files.some((f) => f.endsWith('.java')))
+            tags.push('java');
+        if (files.some((f) => f.endsWith('.go')))
+            tags.push('go');
+        if (baseName.includes('api'))
+            tags.push('api');
+        if (baseName.includes('service'))
+            tags.push('service');
+        if (baseName.includes('web'))
+            tags.push('web');
+        return tags;
+    }
+    isCommonKeyword(str) {
+        const keywords = [
+            'id',
+            'name',
+            'type',
+            'value',
+            'data',
+            'error',
+            'success',
+            'true',
+            'false',
+            'null',
+            'undefined',
+        ];
+        return keywords.includes(str.toLowerCase());
+    }
+    isCommonDirectoryName(name) {
+        const common = [
+            'src',
+            'lib',
+            'test',
+            'tests',
+            'bin',
+            'dist',
+            'build',
+            'public',
+            'static',
+            'assets',
+            'docs',
+            'config',
+        ];
+        return common.includes(name.toLowerCase());
+    }
+    buildPathSegmentReplacements(candidates) {
+        const replacements = [];
+        for (const [paramName, candidateList] of Object.entries(candidates)) {
+            for (const candidate of candidateList) {
+                if (candidate.type === 'path-segment') {
+                    const search = String(candidate.value);
+                    if (search.length === 0) {
+                        continue;
+                    }
+                    replacements.push({
+                        search,
+                        replacement: `{{ ${paramName} }}`,
+                    });
+                }
+            }
+        }
+        return replacements;
+    }
+    buildContentReplacementsByFile(candidates) {
+        const replacements = new Map();
+        for (const [paramName, candidateList] of Object.entries(candidates)) {
+            for (const candidate of candidateList) {
+                if (candidate.type === 'path-segment' || !candidate.filePath) {
+                    continue;
+                }
+                const value = String(candidate.value);
+                if (value.length === 0) {
+                    continue;
+                }
+                const entry = replacements.get(candidate.filePath) ?? [];
+                entry.push({
+                    regex: new RegExp(`\\b${this.escapeRegex(value)}\\b`, 'g'),
+                    replacement: `{{ ${paramName} }}`,
+                });
+                replacements.set(candidate.filePath, entry);
+            }
+        }
+        return replacements;
+    }
+    escapeRegex(str) {
+        return str.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
+    }
+}
+exports.TemplateExtractor = TemplateExtractor;
+//# sourceMappingURL=template-extractor.js.map

package/dist/extraction/template-extractor.js.map

@@ -0,0 +1 @@
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