@aquex/cmos-mcp 1.0.0

package/dist/tools/cmos/learning-reaffirm.js

@@ -0,0 +1,145 @@
+"use strict";
+// ABOUTME: Learning auto-reaffirm — bumps last_reviewed_at on cited learnings.
+// ABOUTME: Sprint 61 m01. Keeps still-true institutional rules out of the staleness pile.
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.IMPLICIT_REAFFIRM_KEYWORD_FLOOR = void 0;
+exports.sanitizeLearningIds = sanitizeLearningIds;
+exports.reaffirmLearningsByIds = reaffirmLearningsByIds;
+exports.detectImplicitLearningCites = detectImplicitLearningCites;
+exports.applyLearningReaffirm = applyLearningReaffirm;
+const schema_migrations_1 = require("./schema-migrations");
+const supersession_detection_1 = require("./supersession-detection");
+/**
+ * Minimum keyword overlap before an *implicit* (content-based) reaffirm fires.
+ *
+ * Calibrated against the supersession-detection floor of MIN_KEYWORDS_FOR_SEARCH=2 —
+ * a 15-keyword overlap is well above casual incidental matches and indicates the new
+ * capture is genuinely talking about the same subject as the cited learning. Lower
+ * values would over-bump on any new capture that shares boilerplate vocabulary
+ * (e.g. "sprint", "mission", "test") with an unrelated learning. Sprint 61 m01.
+ */
+exports.IMPLICIT_REAFFIRM_KEYWORD_FLOOR = 15;
+/**
+ * Sanitize a list of incoming learning IDs.
+ *
+ * Drops entries that are not finite positive integers and surfaces each dropped
+ * entry on `sanitizedFields` so the agent can re-emit cleanly. Mirrors the
+ * `sanitizeStringArray` contract from `intelligence/content-sanitizer.ts`.
+ */
+function sanitizeLearningIds(fieldName, values) {
+    if (!values)
+        return { cleaned: [], sanitizedFields: [] };
+    const cleaned = [];
+    const sanitizedFields = [];
+    const seen = new Set();
+    for (let i = 0; i < values.length; i++) {
+        const value = values[i];
+        if (typeof value === 'number' && Number.isInteger(value) && value > 0) {
+            if (!seen.has(value)) {
+                seen.add(value);
+                cleaned.push(value);
+            }
+            continue;
+        }
+        sanitizedFields.push({
+            field: `${fieldName}[${i}]`,
+            reason: `Dropped non-integer learning id ${JSON.stringify(value)} — citesLearningIds entries must be positive integer learning IDs.`,
+        });
+    }
+    return { cleaned, sanitizedFields };
+}
+/**
+ * Bump `last_reviewed_at` on the given learning IDs in a single UPDATE.
+ *
+ * Returns the IDs that resolved to existing rows alongside any explicit IDs
+ * the caller supplied that did not exist (so the caller can surface them).
+ * Idempotent — touching the same row repeatedly is a no-op beyond the timestamp.
+ */
+function reaffirmLearningsByIds(client, ids, reaffirmedAt) {
+    if (ids.length === 0)
+        return { reaffirmedIds: [], missingIds: [] };
+    (0, schema_migrations_1.ensureReviewTimestamps)(client);
+    const placeholders = ids.map(() => '?').join(', ');
+    const existsResult = client.getMany(`SELECT id FROM learnings WHERE id IN (${placeholders})`, [...ids]);
+    const existingIds = new Set(existsResult.success && existsResult.data ? existsResult.data.map((r) => r.id) : []);
+    const reaffirmedIds = [];
+    const missingIds = [];
+    for (const id of ids) {
+        if (existingIds.has(id)) {
+            reaffirmedIds.push(id);
+        }
+        else {
+            missingIds.push(id);
+        }
+    }
+    if (reaffirmedIds.length === 0) {
+        return { reaffirmedIds: [], missingIds };
+    }
+    const idPlaceholders = reaffirmedIds.map(() => '?').join(', ');
+    client.execute(`UPDATE learnings SET last_reviewed_at = ? WHERE id IN (${idPlaceholders})`, [
+        reaffirmedAt,
+        ...reaffirmedIds,
+    ]);
+    return { reaffirmedIds, missingIds };
+}
+/**
+ * Detect active learnings whose content overlaps `newContent` by at least
+ * `IMPLICIT_REAFFIRM_KEYWORD_FLOOR` keywords.
+ *
+ * No FTS5 index exists for learnings, so we scan all active rows and count
+ * keyword inclusions in JS. The active-learnings set is small in practice
+ * (tens of rows, not thousands) and the keyword count is bounded by the new
+ * capture's vocabulary, so this stays cheap. Mirrors the keyword-fallback
+ * pattern in `supersession-detection.ts`.
+ */
+function detectImplicitLearningCites(client, newContent) {
+    const keywords = (0, supersession_detection_1.extractKeywords)(newContent);
+    if (keywords.length < exports.IMPLICIT_REAFFIRM_KEYWORD_FLOOR) {
+        return [];
+    }
+    const tableExists = client.getOne("SELECT name FROM sqlite_master WHERE type='table' AND name='learnings'", []);
+    if (!tableExists.success || !tableExists.data)
+        return [];
+    const result = client.getMany(`SELECT id, content FROM learnings WHERE status = 'active'`, []);
+    if (!result.success || !result.data)
+        return [];
+    const matched = [];
+    for (const row of result.data) {
+        const overlap = countKeywordOverlap(row.content, keywords);
+        if (overlap >= exports.IMPLICIT_REAFFIRM_KEYWORD_FLOOR) {
+            matched.push(row.id);
+        }
+    }
+    return matched;
+}
+/**
+ * Run the full reaffirm pipeline for a new capture: explicit IDs first,
+ * then implicit overlap detection on the capture's text. Implicit IDs that
+ * are already covered by the explicit list are not double-counted.
+ */
+function applyLearningReaffirm(client, options) {
+    const { explicitIds, newContent, reaffirmedAt, excludeIds } = options;
+    const explicit = reaffirmLearningsByIds(client, explicitIds, reaffirmedAt);
+    const implicitCandidates = detectImplicitLearningCites(client, newContent);
+    const explicitSet = new Set(explicit.reaffirmedIds);
+    const excludeSet = new Set(excludeIds ?? []);
+    const implicitOnly = implicitCandidates.filter((id) => !explicitSet.has(id) && !excludeSet.has(id));
+    const implicit = reaffirmLearningsByIds(client, implicitOnly, reaffirmedAt);
+    return {
+        explicitlyReaffirmedIds: explicit.reaffirmedIds,
+        implicitlyReaffirmedIds: implicit.reaffirmedIds,
+        missingIds: explicit.missingIds,
+    };
+}
+function countKeywordOverlap(text, keywords) {
+    const lower = text.toLowerCase();
+    let count = 0;
+    for (const kw of keywords) {
+        if (lower.includes(kw))
+            count++;
+        if (count >= exports.IMPLICIT_REAFFIRM_KEYWORD_FLOOR)
+            return count;
+    }
+    return count;
+}
+//# sourceMappingURL=learning-reaffirm.js.map

package/dist/tools/cmos/learning-reaffirm.js.map

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package/dist/tools/cmos/orphan-detection.d.ts

@@ -0,0 +1,55 @@
+/**
+ * Orphaned Entity Detection
+ *
+ * Detects orphaned sprints (no missions), orphaned missions (no parent sprint
+ * or stale In Progress status), and stale sessions (active but old).
+ * Surfaces warnings in cmos_agent_onboard for operational hygiene.
+ *
+ * Carried forward from Sprint 30 backlog.
+ *
+ * @module tools/cmos/orphan-detection
+ */
+import type { CmosDatabaseClient } from './client';
+export interface OrphanedSprint {
+    id: string;
+    title: string;
+    status: string | null;
+}
+export interface OrphanedMission {
+    id: string;
+    name: string;
+    status: string;
+    reason: 'no_sprint' | 'stale_in_progress';
+    startedAt: string | null;
+}
+export interface StaleSession {
+    id: string;
+    type: string;
+    title: string;
+    startedAt: string;
+    hoursActive: number;
+}
+export interface OrphanDetectionResult {
+    orphanedSprints: OrphanedSprint[];
+    orphanedMissions: OrphanedMission[];
+    staleSessions: StaleSession[];
+    totalOrphans: number;
+}
+/**
+ * Detect orphaned entities across sprints, missions, and sessions.
+ *
+ * - Orphaned sprints: sprints with zero missions
+ * - Orphaned missions (no_sprint): missions with null/empty sprint_id
+ * - Orphaned missions (stale_in_progress): In Progress missions started >7 days ago
+ * - Stale sessions: active sessions started >24 hours ago
+ */
+export declare function detectOrphans(client: CmosDatabaseClient, options?: {
+    staleSessionHours?: number;
+    staleMissionDays?: number;
+}): OrphanDetectionResult;
+/**
+ * Build warning strings from orphan detection results.
+ * Returns an empty array if no orphans are found.
+ */
+export declare function buildOrphanWarnings(result: OrphanDetectionResult): string[];
+//# sourceMappingURL=orphan-detection.d.ts.map

package/dist/tools/cmos/orphan-detection.d.ts.map

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package/dist/tools/cmos/orphan-detection.js

@@ -0,0 +1,139 @@
+"use strict";
+/**
+ * Orphaned Entity Detection
+ *
+ * Detects orphaned sprints (no missions), orphaned missions (no parent sprint
+ * or stale In Progress status), and stale sessions (active but old).
+ * Surfaces warnings in cmos_agent_onboard for operational hygiene.
+ *
+ * Carried forward from Sprint 30 backlog.
+ *
+ * @module tools/cmos/orphan-detection
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.detectOrphans = detectOrphans;
+exports.buildOrphanWarnings = buildOrphanWarnings;
+/** Default threshold: sessions active for >24 hours are stale */
+const STALE_SESSION_HOURS = 24;
+/** Default threshold: In Progress missions older than 7 days are stale */
+const STALE_MISSION_DAYS = 7;
+// ─── Implementation ──────────────────────────────────────────────────────────
+/**
+ * Detect orphaned entities across sprints, missions, and sessions.
+ *
+ * - Orphaned sprints: sprints with zero missions
+ * - Orphaned missions (no_sprint): missions with null/empty sprint_id
+ * - Orphaned missions (stale_in_progress): In Progress missions started >7 days ago
+ * - Stale sessions: active sessions started >24 hours ago
+ */
+function detectOrphans(client, options) {
+    const sessionThreshold = options?.staleSessionHours ?? STALE_SESSION_HOURS;
+    const missionThreshold = options?.staleMissionDays ?? STALE_MISSION_DAYS;
+    const orphanedSprints = findOrphanedSprints(client);
+    const orphanedMissions = findOrphanedMissions(client, missionThreshold);
+    const staleSessions = findStaleSessions(client, sessionThreshold);
+    return {
+        orphanedSprints,
+        orphanedMissions,
+        staleSessions,
+        totalOrphans: orphanedSprints.length + orphanedMissions.length + staleSessions.length,
+    };
+}
+/**
+ * Build warning strings from orphan detection results.
+ * Returns an empty array if no orphans are found.
+ */
+function buildOrphanWarnings(result) {
+    const warnings = [];
+    if (result.orphanedSprints.length > 0) {
+        const ids = result.orphanedSprints.map((s) => s.id).join(', ');
+        warnings.push(`${result.orphanedSprints.length} orphaned sprint(s) with no missions: ${ids}. Consider adding missions or archiving.`);
+    }
+    for (const m of result.orphanedMissions) {
+        if (m.reason === 'no_sprint') {
+            warnings.push(`Mission ${m.id} ("${m.name}") has no parent sprint. Assign it to a sprint or archive it.`);
+        }
+        else {
+            warnings.push(`Mission ${m.id} ("${m.name}") has been In Progress since ${m.startedAt}. Consider completing or blocking it.`);
+        }
+    }
+    if (result.staleSessions.length > 0) {
+        for (const s of result.staleSessions) {
+            warnings.push(`Session ${s.id} ("${s.title}") has been active for ${Math.round(s.hoursActive)}h. Consider completing it.`);
+        }
+    }
+    return warnings;
+}
+// ─── Queries ─────────────────────────────────────────────────────────────────
+function findOrphanedSprints(client) {
+    const result = client.getMany(`SELECT s.id, s.title, s.status
+     FROM sprints s
+     LEFT JOIN missions m ON m.sprint_id = s.id
+     WHERE s.status NOT IN ('Completed', 'Archived')
+     GROUP BY s.id
+     HAVING COUNT(m.id) = 0
+     ORDER BY s.id`);
+    if (!result.success || !result.data)
+        return [];
+    return result.data.map((row) => ({
+        id: row.id,
+        title: row.title,
+        status: row.status,
+    }));
+}
+function findOrphanedMissions(client, staleDays) {
+    const missions = [];
+    // Missions with no sprint
+    const noSprintResult = client.getMany(`SELECT id, name, status, started_at
+     FROM missions
+     WHERE (sprint_id IS NULL OR sprint_id = '')
+       AND status NOT IN ('Completed', 'Archived')
+     ORDER BY id`);
+    if (noSprintResult.success && noSprintResult.data) {
+        for (const row of noSprintResult.data) {
+            missions.push({
+                id: row.id,
+                name: row.name,
+                status: row.status,
+                reason: 'no_sprint',
+                startedAt: row.started_at,
+            });
+        }
+    }
+    // Stale In Progress missions
+    const staleResult = client.getMany(`SELECT id, name, status, started_at
+     FROM missions
+     WHERE status = 'In Progress'
+       AND started_at < datetime('now', '-' || ? || ' days')
+     ORDER BY started_at`, [staleDays]);
+    if (staleResult.success && staleResult.data) {
+        for (const row of staleResult.data) {
+            missions.push({
+                id: row.id,
+                name: row.name,
+                status: row.status,
+                reason: 'stale_in_progress',
+                startedAt: row.started_at,
+            });
+        }
+    }
+    return missions;
+}
+function findStaleSessions(client, staleHours) {
+    const result = client.getMany(`SELECT id, type, title, started_at,
+            CAST((julianday('now') - julianday(started_at)) * 24 AS REAL) AS hours_active
+     FROM sessions
+     WHERE status = 'active'
+       AND started_at < datetime('now', '-' || ? || ' hours')
+     ORDER BY started_at`, [staleHours]);
+    if (!result.success || !result.data)
+        return [];
+    return result.data.map((row) => ({
+        id: row.id,
+        type: row.type,
+        title: row.title,
+        startedAt: row.started_at,
+        hoursActive: row.hours_active,
+    }));
+}
+//# sourceMappingURL=orphan-detection.js.map

package/dist/tools/cmos/orphan-detection.js.map

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package/dist/tools/cmos/owner-resolution.d.ts

@@ -0,0 +1,21 @@
+import type { CmosDatabaseClient } from './client';
+import { DashboardClient } from './dashboard-client';
+export interface OwnerResolutionResult {
+    owner: string | null;
+    source: 'metadata' | 'dashboard' | 'unresolved';
+}
+/**
+ * Resolve the project owner and persist it to `metadata.owner` when absent.
+ *
+ * Order:
+ *   1. metadata.owner → done.
+ *   2. Dashboard identity (login via env or provided client) → write metadata.owner +
+ *      metadata.dashboard_username → done.
+ *   3. Otherwise return { owner: null, source: 'unresolved' }.
+ *
+ * Never throws — dashboard reachability is best-effort. Callers should still tolerate
+ * a null owner (the identity row will be seeded with an empty cmos_address until a
+ * later checkpoint can fill it in).
+ */
+export declare function resolveAndPersistOwner(client: CmosDatabaseClient, dashClientOverride?: DashboardClient): Promise<OwnerResolutionResult>;
+//# sourceMappingURL=owner-resolution.d.ts.map

package/dist/tools/cmos/owner-resolution.d.ts.map

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package/dist/tools/cmos/owner-resolution.js

@@ -0,0 +1,162 @@
+"use strict";
+// ABOUTME: Resolves and persists the project owner (username) to metadata.owner by
+// consulting the authenticated dashboard identity. Lets sync project-identity seeding
+// produce canonical cmos://<owner>/<slug> addresses instead of cmos://unknown/*.
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.resolveAndPersistOwner = resolveAndPersistOwner;
+const dashboard_client_1 = require("./dashboard-client");
+function parseOwnerFromAddress(address) {
+    if (!address || !address.startsWith('cmos://')) {
+        return null;
+    }
+    const body = address.slice('cmos://'.length);
+    const [owner] = body.split('/');
+    return owner && owner.trim().length > 0 ? owner.trim() : null;
+}
+function normalizeSlug(value) {
+    if (!value)
+        return null;
+    const trimmed = value.trim();
+    return trimmed.length > 0 ? trimmed.toLowerCase().replace(/\s+/g, '-') : null;
+}
+function selectMatchingProject(projects, hints) {
+    const trustedSlugs = new Set([hints.projectId, hints.projectName]
+        .map((value) => normalizeSlug(value))
+        .filter((value) => value !== null));
+    const expectedSlugs = new Set([hints.dashboardSlug, hints.projectId, hints.projectName]
+        .map((value) => normalizeSlug(value))
+        .filter((value) => value !== null));
+    if (hints.dashboardProjectId) {
+        const byId = projects.find((project) => project.id === hints.dashboardProjectId);
+        if (byId) {
+            const matchedSlug = normalizeSlug(byId.slug ?? byId.name ?? null);
+            const slugSetToTrust = trustedSlugs.size > 0 ? trustedSlugs : expectedSlugs;
+            if (slugSetToTrust.size === 0 || (matchedSlug !== null && slugSetToTrust.has(matchedSlug))) {
+                return byId;
+            }
+        }
+    }
+    if (expectedSlugs.size > 0) {
+        const bySlug = (trustedSlugs.size > 0
+            ? projects.find((project) => {
+                const projectSlug = normalizeSlug(project.slug ?? project.name ?? null);
+                return projectSlug !== null && trustedSlugs.has(projectSlug);
+            })
+            : undefined) ??
+            projects.find((project) => {
+                const projectSlug = normalizeSlug(project.slug ?? project.name ?? null);
+                return projectSlug !== null && expectedSlugs.has(projectSlug);
+            });
+        if (bySlug)
+            return bySlug;
+    }
+    if (hints.cmosAddress) {
+        const byAddress = projects.find((project) => (project.cmosAddress ?? project.address ?? null) === hints.cmosAddress);
+        if (byAddress)
+            return byAddress;
+    }
+    return projects[0];
+}
+function readMetadata(client, key) {
+    const r = client.getOne('SELECT value FROM metadata WHERE key = ?', [key]);
+    if (!r.success || !r.data)
+        return null;
+    const v = r.data.value;
+    return v && v.trim().length > 0 ? v.trim() : null;
+}
+function readProjectIdentityAddress(client) {
+    const result = client.getOne("SELECT content FROM contexts WHERE id = 'project_identity'", []);
+    if (!result.success || !result.data?.content) {
+        return null;
+    }
+    try {
+        const parsed = JSON.parse(result.data.content);
+        return typeof parsed.cmos_address === 'string' ? parsed.cmos_address.trim() : null;
+    }
+    catch {
+        return null;
+    }
+}
+function writeMetadata(client, key, value) {
+    client.execute('INSERT OR REPLACE INTO metadata (key, value) VALUES (?, ?)', [key, value]);
+}
+/**
+ * Resolve the project owner and persist it to `metadata.owner` when absent.
+ *
+ * Order:
+ *   1. metadata.owner → done.
+ *   2. Dashboard identity (login via env or provided client) → write metadata.owner +
+ *      metadata.dashboard_username → done.
+ *   3. Otherwise return { owner: null, source: 'unresolved' }.
+ *
+ * Never throws — dashboard reachability is best-effort. Callers should still tolerate
+ * a null owner (the identity row will be seeded with an empty cmos_address until a
+ * later checkpoint can fill it in).
+ */
+async function resolveAndPersistOwner(client, dashClientOverride) {
+    const existing = readMetadata(client, 'owner');
+    const currentAddress = readProjectIdentityAddress(client);
+    const needsProjectIdentityRepair = currentAddress !== null &&
+        (currentAddress.length === 0 || currentAddress.startsWith('cmos://unknown/'));
+    const localProjectId = readMetadata(client, 'dashboard_project_id');
+    const localDashboardSlug = readMetadata(client, 'dashboard_slug');
+    const localProjectKey = readMetadata(client, 'project_id');
+    const localProjectName = readMetadata(client, 'project_name');
+    if (existing && !needsProjectIdentityRepair && !localProjectId) {
+        return { owner: existing, source: 'metadata' };
+    }
+    let dashClient = dashClientOverride ?? null;
+    if (!dashClient) {
+        const envResult = dashboard_client_1.DashboardClient.fromEnv();
+        if (!envResult.success || !envResult.data) {
+            return existing
+                ? { owner: existing, source: 'metadata' }
+                : { owner: null, source: 'unresolved' };
+        }
+        dashClient = envResult.data;
+    }
+    // Trigger authentication. getMyProjects() is a cheap authenticated GET; its side
+    // effect is populating dashClient.userIdentity with the username we need.
+    const probe = await dashClient.getMyProjects();
+    if (!probe.success) {
+        return existing
+            ? { owner: existing, source: 'metadata' }
+            : { owner: null, source: 'unresolved' };
+    }
+    const identity = dashClient.userIdentity;
+    let username = identity?.username ?? null;
+    const projects = (probe.data?.projects ?? []);
+    const matchedProject = selectMatchingProject(projects, {
+        dashboardProjectId: localProjectId,
+        cmosAddress: currentAddress,
+        projectId: localProjectKey,
+        projectName: localProjectName,
+        dashboardSlug: localDashboardSlug,
+    });
+    if (matchedProject?.slug && matchedProject.slug.trim().length > 0) {
+        writeMetadata(client, 'dashboard_slug', matchedProject.slug.trim());
+    }
+    if (matchedProject?.id && matchedProject.id.trim().length > 0) {
+        writeMetadata(client, 'dashboard_project_id', matchedProject.id.trim());
+    }
+    // API-key auth skips the login that populates cachedIdentity. Fall back to the
+    // matching project row returned by /api/projects/me.
+    if (!username && matchedProject) {
+        if (matchedProject.owner) {
+            username = matchedProject.owner;
+        }
+        else {
+            username = parseOwnerFromAddress(matchedProject.cmosAddress ?? matchedProject.address);
+        }
+    }
+    if (!username || username.trim().length === 0) {
+        return existing
+            ? { owner: existing, source: 'metadata' }
+            : { owner: null, source: 'unresolved' };
+    }
+    const trimmed = username.trim();
+    writeMetadata(client, 'owner', trimmed);
+    writeMetadata(client, 'dashboard_username', trimmed);
+    return { owner: trimmed, source: 'dashboard' };
+}
+//# sourceMappingURL=owner-resolution.js.map

package/dist/tools/cmos/owner-resolution.js.map

@@ -0,0 +1 @@
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