@apollo-annotation/shared 0.3.7 → 0.3.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts +3 -0
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js +6 -5
- package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js.map +1 -1
- package/dist/Changes/AddAssemblyFromFileChange.js +1 -1
- package/dist/Changes/AddAssemblyFromFileChange.js.map +1 -1
- package/dist/Changes/AddFeatureChange.js +14 -2
- package/dist/Changes/AddFeatureChange.js.map +1 -1
- package/dist/Changes/AddFeaturesFromFileChange.d.ts +3 -0
- package/dist/Changes/AddFeaturesFromFileChange.js +5 -2
- package/dist/Changes/AddFeaturesFromFileChange.js.map +1 -1
- package/dist/Changes/AddRefSeqAliasesChange.js +2 -7
- package/dist/Changes/AddRefSeqAliasesChange.js.map +1 -1
- package/dist/Changes/FromFileBaseChange.js +6 -6
- package/dist/Changes/FromFileBaseChange.js.map +1 -1
- package/dist/Changes/ImportJBrowseConfigChange.js +1 -1
- package/dist/Changes/ImportJBrowseConfigChange.js.map +1 -1
- package/dist/Changes/MergeExonsChange.d.ts +0 -1
- package/dist/Changes/MergeExonsChange.js +14 -30
- package/dist/Changes/MergeExonsChange.js.map +1 -1
- package/dist/Changes/MergeTranscriptsChange.d.ts +1 -3
- package/dist/Changes/MergeTranscriptsChange.js +55 -56
- package/dist/Changes/MergeTranscriptsChange.js.map +1 -1
- package/dist/Checks/CDSCheck.d.ts +1 -1
- package/dist/Checks/CDSCheck.js +12 -12
- package/dist/Checks/CDSCheck.js.map +1 -1
- package/dist/Checks/TranscriptCheck.d.ts +9 -0
- package/dist/Checks/TranscriptCheck.js +109 -0
- package/dist/Checks/TranscriptCheck.js.map +1 -0
- package/dist/Checks/index.d.ts +1 -0
- package/dist/Checks/index.js +1 -0
- package/dist/Checks/index.js.map +1 -1
- package/dist/Checks/util.d.ts +2 -0
- package/dist/Checks/util.js +15 -0
- package/dist/Checks/util.js.map +1 -0
- package/dist/GFF3/annotationFeatureToGFF3.js +3 -1
- package/dist/GFF3/annotationFeatureToGFF3.js.map +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.js +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.js.map +1 -1
- package/dist/GFF3/gff3ToAnnotationFeature.test.js +4 -4
- package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
- package/dist/tsconfig.tsbuildinfo +1 -1
- package/dist/util.d.ts +3 -0
- package/dist/util.js +33 -0
- package/dist/util.js.map +1 -1
- package/package.json +9 -9
- package/src/Changes/AddAssemblyAndFeaturesFromFileChange.ts +8 -6
- package/src/Changes/AddAssemblyFromFileChange.ts +1 -1
- package/src/Changes/AddFeatureChange.ts +16 -2
- package/src/Changes/AddFeaturesFromFileChange.ts +6 -1
- package/src/Changes/AddRefSeqAliasesChange.ts +2 -8
- package/src/Changes/FromFileBaseChange.ts +6 -6
- package/src/Changes/ImportJBrowseConfigChange.ts +1 -1
- package/src/Changes/MergeExonsChange.ts +52 -36
- package/src/Changes/MergeTranscriptsChange.ts +82 -67
- package/src/Checks/CDSCheck.ts +15 -13
- package/src/Checks/TranscriptCheck.ts +138 -0
- package/src/Checks/index.ts +1 -0
- package/src/Checks/util.ts +13 -0
- package/src/GFF3/annotationFeatureToGFF3.ts +4 -1
- package/src/GFF3/gff3ToAnnotationFeature.test.ts +4 -4
- package/src/GFF3/gff3ToAnnotationFeature.ts +1 -1
- package/src/util.ts +37 -0
- package/test_data/example01.json +20 -20
- package/test_data/example02.json +38 -38
- package/test_data/example04.json +57 -57
- package/test_data/gene_representations.gff3 +1054 -276
package/test_data/example02.json
CHANGED
|
@@ -2,24 +2,24 @@
|
|
|
2
2
|
"_id": "66e049609048deab4117a33e",
|
|
3
3
|
"refSeq": "chr1",
|
|
4
4
|
"type": "gene",
|
|
5
|
-
"min":
|
|
6
|
-
"max":
|
|
5
|
+
"min": 20999,
|
|
6
|
+
"max": 29000,
|
|
7
7
|
"strand": 1,
|
|
8
8
|
"children": {
|
|
9
9
|
"66e049609048deab4117a331": {
|
|
10
10
|
"_id": "66e049609048deab4117a331",
|
|
11
11
|
"refSeq": "chr1",
|
|
12
12
|
"type": "mRNA",
|
|
13
|
-
"min":
|
|
14
|
-
"max":
|
|
13
|
+
"min": 21049,
|
|
14
|
+
"max": 29000,
|
|
15
15
|
"strand": 1,
|
|
16
16
|
"children": {
|
|
17
17
|
"66e049609048deab4117a32c": {
|
|
18
18
|
"_id": "66e049609048deab4117a32c",
|
|
19
19
|
"refSeq": "chr1",
|
|
20
20
|
"type": "exon",
|
|
21
|
-
"min":
|
|
22
|
-
"max":
|
|
21
|
+
"min": 21049,
|
|
22
|
+
"max": 21499,
|
|
23
23
|
"strand": 1,
|
|
24
24
|
"attributes": {
|
|
25
25
|
"gff_id": ["exon20001"]
|
|
@@ -29,8 +29,8 @@
|
|
|
29
29
|
"_id": "66e049609048deab4117a32d",
|
|
30
30
|
"refSeq": "chr1",
|
|
31
31
|
"type": "exon",
|
|
32
|
-
"min":
|
|
33
|
-
"max":
|
|
32
|
+
"min": 22999,
|
|
33
|
+
"max": 23902,
|
|
34
34
|
"strand": 1,
|
|
35
35
|
"attributes": {
|
|
36
36
|
"gff_id": ["exon20004"]
|
|
@@ -40,8 +40,8 @@
|
|
|
40
40
|
"_id": "66e049609048deab4117a32e",
|
|
41
41
|
"refSeq": "chr1",
|
|
42
42
|
"type": "exon",
|
|
43
|
-
"min":
|
|
44
|
-
"max":
|
|
43
|
+
"min": 24999,
|
|
44
|
+
"max": 25500,
|
|
45
45
|
"strand": 1,
|
|
46
46
|
"attributes": {
|
|
47
47
|
"gff_id": ["exon20006"]
|
|
@@ -51,8 +51,8 @@
|
|
|
51
51
|
"_id": "66e049609048deab4117a32f",
|
|
52
52
|
"refSeq": "chr1",
|
|
53
53
|
"type": "exon",
|
|
54
|
-
"min":
|
|
55
|
-
"max":
|
|
54
|
+
"min": 26999,
|
|
55
|
+
"max": 29000,
|
|
56
56
|
"strand": 1,
|
|
57
57
|
"attributes": {
|
|
58
58
|
"gff_id": ["exon20009"]
|
|
@@ -62,8 +62,8 @@
|
|
|
62
62
|
"_id": "66e049609048deab4117a330",
|
|
63
63
|
"refSeq": "chr1",
|
|
64
64
|
"type": "CDS",
|
|
65
|
-
"min":
|
|
66
|
-
"max":
|
|
65
|
+
"min": 21200,
|
|
66
|
+
"max": 27600,
|
|
67
67
|
"strand": 1,
|
|
68
68
|
"attributes": {
|
|
69
69
|
"gff_id": ["cds20001"],
|
|
@@ -80,16 +80,16 @@
|
|
|
80
80
|
"_id": "66e049609048deab4117a336",
|
|
81
81
|
"refSeq": "chr1",
|
|
82
82
|
"type": "mRNA",
|
|
83
|
-
"min":
|
|
84
|
-
"max":
|
|
83
|
+
"min": 21049,
|
|
84
|
+
"max": 29000,
|
|
85
85
|
"strand": 1,
|
|
86
86
|
"children": {
|
|
87
87
|
"66e049609048deab4117a332": {
|
|
88
88
|
"_id": "66e049609048deab4117a332",
|
|
89
89
|
"refSeq": "chr1",
|
|
90
90
|
"type": "exon",
|
|
91
|
-
"min":
|
|
92
|
-
"max":
|
|
91
|
+
"min": 21049,
|
|
92
|
+
"max": 21499,
|
|
93
93
|
"strand": 1,
|
|
94
94
|
"attributes": {
|
|
95
95
|
"gff_id": ["exon20002"]
|
|
@@ -99,8 +99,8 @@
|
|
|
99
99
|
"_id": "66e049609048deab4117a333",
|
|
100
100
|
"refSeq": "chr1",
|
|
101
101
|
"type": "exon",
|
|
102
|
-
"min":
|
|
103
|
-
"max":
|
|
102
|
+
"min": 24999,
|
|
103
|
+
"max": 25500,
|
|
104
104
|
"strand": 1,
|
|
105
105
|
"attributes": {
|
|
106
106
|
"gff_id": ["exon20007"]
|
|
@@ -110,8 +110,8 @@
|
|
|
110
110
|
"_id": "66e049609048deab4117a334",
|
|
111
111
|
"refSeq": "chr1",
|
|
112
112
|
"type": "exon",
|
|
113
|
-
"min":
|
|
114
|
-
"max":
|
|
113
|
+
"min": 26999,
|
|
114
|
+
"max": 29000,
|
|
115
115
|
"strand": 1,
|
|
116
116
|
"attributes": {
|
|
117
117
|
"gff_id": ["exon20010"]
|
|
@@ -121,8 +121,8 @@
|
|
|
121
121
|
"_id": "66e049609048deab4117a335",
|
|
122
122
|
"refSeq": "chr1",
|
|
123
123
|
"type": "CDS",
|
|
124
|
-
"min":
|
|
125
|
-
"max":
|
|
124
|
+
"min": 21200,
|
|
125
|
+
"max": 27600,
|
|
126
126
|
"strand": 1,
|
|
127
127
|
"attributes": {
|
|
128
128
|
"gff_id": ["cds20002"],
|
|
@@ -139,16 +139,16 @@
|
|
|
139
139
|
"_id": "66e049609048deab4117a33d",
|
|
140
140
|
"refSeq": "chr1",
|
|
141
141
|
"type": "mRNA",
|
|
142
|
-
"min":
|
|
143
|
-
"max":
|
|
142
|
+
"min": 21299,
|
|
143
|
+
"max": 29000,
|
|
144
144
|
"strand": 1,
|
|
145
145
|
"children": {
|
|
146
146
|
"66e049609048deab4117a337": {
|
|
147
147
|
"_id": "66e049609048deab4117a337",
|
|
148
148
|
"refSeq": "chr1",
|
|
149
149
|
"type": "exon",
|
|
150
|
-
"min":
|
|
151
|
-
"max":
|
|
150
|
+
"min": 21299,
|
|
151
|
+
"max": 21499,
|
|
152
152
|
"strand": 1,
|
|
153
153
|
"attributes": {
|
|
154
154
|
"gff_id": ["exon20003"]
|
|
@@ -158,8 +158,8 @@
|
|
|
158
158
|
"_id": "66e049609048deab4117a338",
|
|
159
159
|
"refSeq": "chr1",
|
|
160
160
|
"type": "exon",
|
|
161
|
-
"min":
|
|
162
|
-
"max":
|
|
161
|
+
"min": 22999,
|
|
162
|
+
"max": 23902,
|
|
163
163
|
"strand": 1,
|
|
164
164
|
"attributes": {
|
|
165
165
|
"gff_id": ["exon20005"]
|
|
@@ -169,8 +169,8 @@
|
|
|
169
169
|
"_id": "66e049609048deab4117a339",
|
|
170
170
|
"refSeq": "chr1",
|
|
171
171
|
"type": "exon",
|
|
172
|
-
"min":
|
|
173
|
-
"max":
|
|
172
|
+
"min": 24999,
|
|
173
|
+
"max": 25500,
|
|
174
174
|
"strand": 1,
|
|
175
175
|
"attributes": {
|
|
176
176
|
"gff_id": ["exon20008"]
|
|
@@ -180,8 +180,8 @@
|
|
|
180
180
|
"_id": "66e049609048deab4117a33a",
|
|
181
181
|
"refSeq": "chr1",
|
|
182
182
|
"type": "exon",
|
|
183
|
-
"min":
|
|
184
|
-
"max":
|
|
183
|
+
"min": 26999,
|
|
184
|
+
"max": 29000,
|
|
185
185
|
"strand": 1,
|
|
186
186
|
"attributes": {
|
|
187
187
|
"gff_id": ["exon20011"]
|
|
@@ -191,8 +191,8 @@
|
|
|
191
191
|
"_id": "66e049609048deab4117a33b",
|
|
192
192
|
"refSeq": "chr1",
|
|
193
193
|
"type": "CDS",
|
|
194
|
-
"min":
|
|
195
|
-
"max":
|
|
194
|
+
"min": 23300,
|
|
195
|
+
"max": 27600,
|
|
196
196
|
"strand": 1,
|
|
197
197
|
"attributes": {
|
|
198
198
|
"gff_id": ["cds20003"],
|
|
@@ -203,8 +203,8 @@
|
|
|
203
203
|
"_id": "66e049609048deab4117a33c",
|
|
204
204
|
"refSeq": "chr1",
|
|
205
205
|
"type": "CDS",
|
|
206
|
-
"min":
|
|
207
|
-
"max":
|
|
206
|
+
"min": 23390,
|
|
207
|
+
"max": 27600,
|
|
208
208
|
"strand": 1,
|
|
209
209
|
"attributes": {
|
|
210
210
|
"gff_id": ["cds20004"],
|
package/test_data/example04.json
CHANGED
|
@@ -2,77 +2,77 @@
|
|
|
2
2
|
"_id": "66e0555fae0bd7cfcd69912d",
|
|
3
3
|
"refSeq": "chr1",
|
|
4
4
|
"type": "gene",
|
|
5
|
-
"min":
|
|
6
|
-
"max":
|
|
5
|
+
"min": 60999,
|
|
6
|
+
"max": 69000,
|
|
7
7
|
"strand": 1,
|
|
8
8
|
"children": {
|
|
9
9
|
"66e0555fae0bd7cfcd699120": {
|
|
10
10
|
"_id": "66e0555fae0bd7cfcd699120",
|
|
11
11
|
"refSeq": "chr1",
|
|
12
12
|
"type": "mRNA",
|
|
13
|
-
"min":
|
|
14
|
-
"max":
|
|
13
|
+
"min": 61049,
|
|
14
|
+
"max": 69000,
|
|
15
15
|
"strand": 1,
|
|
16
16
|
"children": {
|
|
17
17
|
"66e0555fae0bd7cfcd69911b": {
|
|
18
18
|
"_id": "66e0555fae0bd7cfcd69911b",
|
|
19
19
|
"refSeq": "chr1",
|
|
20
20
|
"type": "exon",
|
|
21
|
-
"min":
|
|
22
|
-
"max":
|
|
21
|
+
"min": 61049,
|
|
22
|
+
"max": 61499,
|
|
23
23
|
"strand": 1,
|
|
24
24
|
"attributes": {
|
|
25
|
-
"gff_id": ["
|
|
25
|
+
"gff_id": ["exon60001"]
|
|
26
26
|
}
|
|
27
27
|
},
|
|
28
28
|
"66e0555fae0bd7cfcd69911c": {
|
|
29
29
|
"_id": "66e0555fae0bd7cfcd69911c",
|
|
30
30
|
"refSeq": "chr1",
|
|
31
31
|
"type": "exon",
|
|
32
|
-
"min":
|
|
33
|
-
"max":
|
|
32
|
+
"min": 62999,
|
|
33
|
+
"max": 63902,
|
|
34
34
|
"strand": 1,
|
|
35
35
|
"attributes": {
|
|
36
|
-
"gff_id": ["
|
|
36
|
+
"gff_id": ["exon60003"]
|
|
37
37
|
}
|
|
38
38
|
},
|
|
39
39
|
"66e0555fae0bd7cfcd69911d": {
|
|
40
40
|
"_id": "66e0555fae0bd7cfcd69911d",
|
|
41
41
|
"refSeq": "chr1",
|
|
42
42
|
"type": "exon",
|
|
43
|
-
"min":
|
|
44
|
-
"max":
|
|
43
|
+
"min": 64999,
|
|
44
|
+
"max": 65500,
|
|
45
45
|
"strand": 1,
|
|
46
46
|
"attributes": {
|
|
47
|
-
"gff_id": ["
|
|
47
|
+
"gff_id": ["exon60004"]
|
|
48
48
|
}
|
|
49
49
|
},
|
|
50
50
|
"66e0555fae0bd7cfcd69911e": {
|
|
51
51
|
"_id": "66e0555fae0bd7cfcd69911e",
|
|
52
52
|
"refSeq": "chr1",
|
|
53
53
|
"type": "exon",
|
|
54
|
-
"min":
|
|
55
|
-
"max":
|
|
54
|
+
"min": 66999,
|
|
55
|
+
"max": 69000,
|
|
56
56
|
"strand": 1,
|
|
57
57
|
"attributes": {
|
|
58
|
-
"gff_id": ["
|
|
58
|
+
"gff_id": ["exon60005"]
|
|
59
59
|
}
|
|
60
60
|
},
|
|
61
61
|
"66e0555fae0bd7cfcd69911f": {
|
|
62
62
|
"_id": "66e0555fae0bd7cfcd69911f",
|
|
63
63
|
"refSeq": "chr1",
|
|
64
64
|
"type": "CDS",
|
|
65
|
-
"min":
|
|
66
|
-
"max":
|
|
65
|
+
"min": 61200,
|
|
66
|
+
"max": 67600,
|
|
67
67
|
"strand": 1,
|
|
68
68
|
"attributes": {
|
|
69
|
-
"gff_id": ["
|
|
69
|
+
"gff_id": ["cds60001"],
|
|
70
70
|
"gff_name": ["edenprotein.1"]
|
|
71
71
|
}
|
|
72
72
|
}
|
|
73
73
|
},
|
|
74
74
|
"attributes": {
|
|
75
|
-
"gff_id": ["
|
|
75
|
+
"gff_id": ["mRNA60001"],
|
|
76
76
|
"gff_name": ["EDEN.1"]
|
|
77
77
|
}
|
|
78
78
|
},
|
|
@@ -80,58 +80,58 @@
|
|
|
80
80
|
"_id": "66e0555fae0bd7cfcd699125",
|
|
81
81
|
"refSeq": "chr1",
|
|
82
82
|
"type": "mRNA",
|
|
83
|
-
"min":
|
|
84
|
-
"max":
|
|
83
|
+
"min": 61049,
|
|
84
|
+
"max": 69000,
|
|
85
85
|
"strand": 1,
|
|
86
86
|
"children": {
|
|
87
87
|
"66e0555fae0bd7cfcd699121": {
|
|
88
88
|
"_id": "66e0555fae0bd7cfcd699121",
|
|
89
89
|
"refSeq": "chr1",
|
|
90
90
|
"type": "exon",
|
|
91
|
-
"min":
|
|
92
|
-
"max":
|
|
91
|
+
"min": 61049,
|
|
92
|
+
"max": 61499,
|
|
93
93
|
"strand": 1,
|
|
94
94
|
"attributes": {
|
|
95
|
-
"gff_id": ["
|
|
95
|
+
"gff_id": ["exon60001"]
|
|
96
96
|
}
|
|
97
97
|
},
|
|
98
98
|
"66e0555fae0bd7cfcd699122": {
|
|
99
99
|
"_id": "66e0555fae0bd7cfcd699122",
|
|
100
100
|
"refSeq": "chr1",
|
|
101
101
|
"type": "exon",
|
|
102
|
-
"min":
|
|
103
|
-
"max":
|
|
102
|
+
"min": 64999,
|
|
103
|
+
"max": 65500,
|
|
104
104
|
"strand": 1,
|
|
105
105
|
"attributes": {
|
|
106
|
-
"gff_id": ["
|
|
106
|
+
"gff_id": ["exon60004"]
|
|
107
107
|
}
|
|
108
108
|
},
|
|
109
109
|
"66e0555fae0bd7cfcd699123": {
|
|
110
110
|
"_id": "66e0555fae0bd7cfcd699123",
|
|
111
111
|
"refSeq": "chr1",
|
|
112
112
|
"type": "exon",
|
|
113
|
-
"min":
|
|
114
|
-
"max":
|
|
113
|
+
"min": 66999,
|
|
114
|
+
"max": 69000,
|
|
115
115
|
"strand": 1,
|
|
116
116
|
"attributes": {
|
|
117
|
-
"gff_id": ["
|
|
117
|
+
"gff_id": ["exon60005"]
|
|
118
118
|
}
|
|
119
119
|
},
|
|
120
120
|
"66e0555fae0bd7cfcd699124": {
|
|
121
121
|
"_id": "66e0555fae0bd7cfcd699124",
|
|
122
122
|
"refSeq": "chr1",
|
|
123
123
|
"type": "CDS",
|
|
124
|
-
"min":
|
|
125
|
-
"max":
|
|
124
|
+
"min": 61200,
|
|
125
|
+
"max": 67600,
|
|
126
126
|
"strand": 1,
|
|
127
127
|
"attributes": {
|
|
128
|
-
"gff_id": ["
|
|
128
|
+
"gff_id": ["cds60002"],
|
|
129
129
|
"gff_name": ["edenprotein.2"]
|
|
130
130
|
}
|
|
131
131
|
}
|
|
132
132
|
},
|
|
133
133
|
"attributes": {
|
|
134
|
-
"gff_id": ["
|
|
134
|
+
"gff_id": ["mRNA60002"],
|
|
135
135
|
"gff_name": ["EDEN.2"]
|
|
136
136
|
}
|
|
137
137
|
},
|
|
@@ -139,63 +139,63 @@
|
|
|
139
139
|
"_id": "66e0555fae0bd7cfcd69912c",
|
|
140
140
|
"refSeq": "chr1",
|
|
141
141
|
"type": "mRNA",
|
|
142
|
-
"min":
|
|
143
|
-
"max":
|
|
142
|
+
"min": 61299,
|
|
143
|
+
"max": 69000,
|
|
144
144
|
"strand": 1,
|
|
145
145
|
"children": {
|
|
146
146
|
"66e0555fae0bd7cfcd699126": {
|
|
147
147
|
"_id": "66e0555fae0bd7cfcd699126",
|
|
148
148
|
"refSeq": "chr1",
|
|
149
149
|
"type": "exon",
|
|
150
|
-
"min":
|
|
151
|
-
"max":
|
|
150
|
+
"min": 61299,
|
|
151
|
+
"max": 61499,
|
|
152
152
|
"strand": 1,
|
|
153
153
|
"attributes": {
|
|
154
|
-
"gff_id": ["
|
|
154
|
+
"gff_id": ["exon60002"]
|
|
155
155
|
}
|
|
156
156
|
},
|
|
157
157
|
"66e0555fae0bd7cfcd699127": {
|
|
158
158
|
"_id": "66e0555fae0bd7cfcd699127",
|
|
159
159
|
"refSeq": "chr1",
|
|
160
160
|
"type": "exon",
|
|
161
|
-
"min":
|
|
162
|
-
"max":
|
|
161
|
+
"min": 62999,
|
|
162
|
+
"max": 63902,
|
|
163
163
|
"strand": 1,
|
|
164
164
|
"attributes": {
|
|
165
|
-
"gff_id": ["
|
|
165
|
+
"gff_id": ["exon60003"]
|
|
166
166
|
}
|
|
167
167
|
},
|
|
168
168
|
"66e0555fae0bd7cfcd699128": {
|
|
169
169
|
"_id": "66e0555fae0bd7cfcd699128",
|
|
170
170
|
"refSeq": "chr1",
|
|
171
171
|
"type": "exon",
|
|
172
|
-
"min":
|
|
173
|
-
"max":
|
|
172
|
+
"min": 64999,
|
|
173
|
+
"max": 65500,
|
|
174
174
|
"strand": 1,
|
|
175
175
|
"attributes": {
|
|
176
|
-
"gff_id": ["
|
|
176
|
+
"gff_id": ["exon60004"]
|
|
177
177
|
}
|
|
178
178
|
},
|
|
179
179
|
"66e0555fae0bd7cfcd699129": {
|
|
180
180
|
"_id": "66e0555fae0bd7cfcd699129",
|
|
181
181
|
"refSeq": "chr1",
|
|
182
182
|
"type": "exon",
|
|
183
|
-
"min":
|
|
184
|
-
"max":
|
|
183
|
+
"min": 66999,
|
|
184
|
+
"max": 69000,
|
|
185
185
|
"strand": 1,
|
|
186
186
|
"attributes": {
|
|
187
|
-
"gff_id": ["
|
|
187
|
+
"gff_id": ["exon60005"]
|
|
188
188
|
}
|
|
189
189
|
},
|
|
190
190
|
"66e0555fae0bd7cfcd69912a": {
|
|
191
191
|
"_id": "66e0555fae0bd7cfcd69912a",
|
|
192
192
|
"refSeq": "chr1",
|
|
193
193
|
"type": "CDS",
|
|
194
|
-
"min":
|
|
195
|
-
"max":
|
|
194
|
+
"min": 63300,
|
|
195
|
+
"max": 67600,
|
|
196
196
|
"strand": 1,
|
|
197
197
|
"attributes": {
|
|
198
|
-
"gff_id": ["
|
|
198
|
+
"gff_id": ["cds60003"],
|
|
199
199
|
"gff_name": ["edenprotein.3"]
|
|
200
200
|
}
|
|
201
201
|
},
|
|
@@ -203,23 +203,23 @@
|
|
|
203
203
|
"_id": "66e0555fae0bd7cfcd69912b",
|
|
204
204
|
"refSeq": "chr1",
|
|
205
205
|
"type": "CDS",
|
|
206
|
-
"min":
|
|
207
|
-
"max":
|
|
206
|
+
"min": 63390,
|
|
207
|
+
"max": 67600,
|
|
208
208
|
"strand": 1,
|
|
209
209
|
"attributes": {
|
|
210
|
-
"gff_id": ["
|
|
210
|
+
"gff_id": ["cds60004"],
|
|
211
211
|
"gff_name": ["edenprotein.4"]
|
|
212
212
|
}
|
|
213
213
|
}
|
|
214
214
|
},
|
|
215
215
|
"attributes": {
|
|
216
|
-
"gff_id": ["
|
|
216
|
+
"gff_id": ["mRNA60003"],
|
|
217
217
|
"gff_name": ["EDEN.3"]
|
|
218
218
|
}
|
|
219
219
|
}
|
|
220
220
|
},
|
|
221
221
|
"attributes": {
|
|
222
|
-
"gff_id": ["
|
|
222
|
+
"gff_id": ["gene60001"],
|
|
223
223
|
"gff_name": ["EDEN"]
|
|
224
224
|
}
|
|
225
225
|
}
|