@apollo-annotation/shared 0.3.7 → 0.3.9

package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts

@@ -8,6 +8,9 @@ export interface AddAssemblyAndFeaturesFromFileChangeDetails {
     fileIds: {
         fa: string;
     };
+    parseOptions?: {
+        bufferSize: number;
+    };
 }
 export interface SerializedAddAssemblyAndFeaturesFromFileChangeSingle extends SerializedAddAssemblyAndFeaturesFromFileChangeBase, AddAssemblyAndFeaturesFromFileChangeDetails {
 }

package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js

@@ -30,7 +30,7 @@ class AddAssemblyAndFeaturesFromFileChange extends FromFileBaseChange_1.FromFile
         const { assemblyModel, checkModel, fileModel, filesService, user } = backend;
         const { assembly, changes, logger } = this;
         for (const change of changes) {
-            const { assemblyName, fileIds } = change;
+            const { assemblyName, fileIds, parseOptions } = change;
             const fileId = fileIds.fa;
             const { FILE_UPLOAD_FOLDER } = process.env;
             if (!FILE_UPLOAD_FOLDER) {
@@ -50,7 +50,7 @@ class AddAssemblyAndFeaturesFromFileChange extends FromFileBaseChange_1.FromFile
                 throw new Error(`Assembly "${assemblyName}" already exists`);
             }
             // get checks
-            const checkDocs = await checkModel.find({ default: true }).exec();
+            const checkDocs = await checkModel.find({ isDefault: true }).exec();
             const checks = checkDocs.map((checkDoc) => checkDoc._id.toHexString());
             // Add assembly
             const [newAssemblyDoc] = await assemblyModel.create([
@@ -61,9 +61,10 @@ class AddAssemblyAndFeaturesFromFileChange extends FromFileBaseChange_1.FromFile
             // Add refSeqs
             // We cannot use Mongo 'session' / transaction here because Mongo has 16 MB limit for transaction
             await this.addRefSeqIntoDb(fileDoc, newAssemblyDoc._id.toString(), backend);
-            // Loop all features
-            logger.debug?.(`**************** LOOPATAAN KAIKKI FEATURET SEURAAVAKSI File type: "${fileDoc.type}"`);
-            const featureStream = filesService.parseGFF3(filesService.getFileStream(fileDoc));
+            const { bufferSize = 10_000 } = parseOptions ?? {};
+            const featureStream = filesService.parseGFF3(filesService.getFileStream(fileDoc), { bufferSize });
+            // @ts-expect-error type is wrong here
+            // eslint-disable-next-line @typescript-eslint/await-thenable
             for await (const f of featureStream) {
                 const gff3Feature = f;
                 logger.verbose?.(`ENTRY=${JSON.stringify(gff3Feature)}`);

package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"AddAssemblyAndFeaturesFromFileChange.js","sourceRoot":"","sources":["../../src/Changes/AddAssemblyAndFeaturesFromFileChange.ts"],"names":[],"mappings":";AAAA,qDAAqD;;;AAWrD,6DAAyD;AAyBzD,MAAa,oCAAqC,SAAQ,uCAAkB;IAC1E,QAAQ,GAAG,sCAA+C,CAAA;IAC1D,OAAO,CAA+C;IAEtD,YACE,IAAoD,EACpD,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,IAAI,YAAY;QACd,OAAO,aAAa,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,YAAY,2DAA2D,CAAA;IAC7G,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC,GAAG,OAAO,CAAA;YAC3C,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA;QACtD,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACxC,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,aAAa,EAAE,UAAU,EAAE,SAAS,EAAE,YAAY,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QAC5E,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAC1C,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,MAAM,GAAG,OAAO,CAAC,EAAE,CAAA;YAEzB,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;YAC1C,IAAI,CAAC,kBAAkB,EAAE,CAAC;gBACxB,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAA;YAC7D,CAAC;YACD,oBAAoB;YACpB,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,CAAA;YACvD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,SAAS,MAAM,sBAAsB,CAAC,CAAA;YACxD,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,MAAM,gBAAgB,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAA;YAEpE,6BAA6B;YAC7B,MAAM,WAAW,GAAG,MAAM,aAAa;iBACpC,OAAO,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC;iBAC/B,IAAI,EAAE,CAAA;YACT,IAAI,WAAW,EAAE,CAAC;gBAChB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,kBAAkB,CAAC,CAAA;YAC9D,CAAC;YACD,aAAa;YACb,MAAM,SAAS,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;YACjE,MAAM,MAAM,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAA;YACtE,eAAe;YACf,MAAM,CAAC,cAAc,CAAC,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC;gBAClD,EAAE,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE;aACxE,CAAC,CAAA;YACF,MAAM,CAAC,KAAK,EAAE,CACZ,uBAAuB,YAAY,aAAa,cAAc,CAAC,GAAG,CAAC,WAAW,EAAE,GAAG,CACpF,CAAA;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,OAAO,CAAC,IAAI,GAAG,CAAC,CAAA;YAE9C,cAAc;YACd,iGAAiG;YACjG,MAAM,IAAI,CAAC,eAAe,CACxB,OAAO,EACP,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,EAC7B,OAAO,CACR,CAAA;YAED,oBAAoB;YACpB,MAAM,CAAC,KAAK,EAAE,CACZ,sEAAsE,OAAO,CAAC,IAAI,GAAG,CACtF,CAAA;YACD,MAAM,aAAa,GAAG,YAAY,CAAC,SAAS,CAC1C,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,CACpC,CAAA;YACD,IAAI,KAAK,EAAE,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC;gBACpC,MAAM,WAAW,GAAG,CAAgB,CAAA;gBACpC,MAAM,CAAC,OAAO,EAAE,CAAC,SAAS,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;gBACxD,gCAAgC;gBAChC,MAAM,IAAI,CAAC,gBAAgB,CAAC,WAAW,EAAE,OAAO,CAAC,CAAA;YACnD,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO,IAAI,oCAAoC,CAC7C,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,EAC/B,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAzGD,oFAyGC"}
+{"version":3,"file":"AddAssemblyAndFeaturesFromFileChange.js","sourceRoot":"","sources":["../../src/Changes/AddAssemblyAndFeaturesFromFileChange.ts"],"names":[],"mappings":";AAAA,qDAAqD;;;AAWrD,6DAAyD;AA0BzD,MAAa,oCAAqC,SAAQ,uCAAkB;IAC1E,QAAQ,GAAG,sCAA+C,CAAA;IAC1D,OAAO,CAA+C;IAEtD,YACE,IAAoD,EACpD,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,IAAI,YAAY;QACd,OAAO,aAAa,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,YAAY,2DAA2D,CAAA;IAC7G,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC,GAAG,OAAO,CAAA;YAC3C,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA;QACtD,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACxC,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,aAAa,EAAE,UAAU,EAAE,SAAS,EAAE,YAAY,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QAC5E,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAC1C,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,MAAM,CAAA;YACtD,MAAM,MAAM,GAAG,OAAO,CAAC,EAAE,CAAA;YAEzB,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;YAC1C,IAAI,CAAC,kBAAkB,EAAE,CAAC;gBACxB,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAA;YAC7D,CAAC;YACD,oBAAoB;YACpB,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,CAAA;YACvD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,SAAS,MAAM,sBAAsB,CAAC,CAAA;YACxD,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,MAAM,gBAAgB,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAA;YAEpE,6BAA6B;YAC7B,MAAM,WAAW,GAAG,MAAM,aAAa;iBACpC,OAAO,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC;iBAC/B,IAAI,EAAE,CAAA;YACT,IAAI,WAAW,EAAE,CAAC;gBAChB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,kBAAkB,CAAC,CAAA;YAC9D,CAAC;YACD,aAAa;YACb,MAAM,SAAS,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;YAEnE,MAAM,MAAM,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAA;YACtE,eAAe;YACf,MAAM,CAAC,cAAc,CAAC,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC;gBAClD,EAAE,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE;aACxE,CAAC,CAAA;YACF,MAAM,CAAC,KAAK,EAAE,CACZ,uBAAuB,YAAY,aAAa,cAAc,CAAC,GAAG,CAAC,WAAW,EAAE,GAAG,CACpF,CAAA;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,OAAO,CAAC,IAAI,GAAG,CAAC,CAAA;YAE9C,cAAc;YACd,iGAAiG;YACjG,MAAM,IAAI,CAAC,eAAe,CACxB,OAAO,EACP,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,EAC7B,OAAO,CACR,CAAA;YAED,MAAM,EAAE,UAAU,GAAG,MAAM,EAAE,GAAG,YAAY,IAAI,EAAE,CAAA;YAClD,MAAM,aAAa,GAAG,YAAY,CAAC,SAAS,CAC1C,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,EACnC,EAAE,UAAU,EAAE,CACf,CAAA;YACD,sCAAsC;YACtC,6DAA6D;YAC7D,IAAI,KAAK,EAAE,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC;gBACpC,MAAM,WAAW,GAAG,CAAgB,CAAA;gBACpC,MAAM,CAAC,OAAO,EAAE,CAAC,SAAS,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;gBACxD,gCAAgC;gBAChC,MAAM,IAAI,CAAC,gBAAgB,CAAC,WAAW,EAAE,OAAO,CAAC,CAAA;YACnD,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO,IAAI,oCAAoC,CAC7C,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,EAC/B,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AA1GD,oFA0GC"}

package/dist/Changes/AddAssemblyFromFileChange.js

@@ -71,7 +71,7 @@ class AddAssemblyFromFileChange extends FromFileBaseChange_1.FromFileBaseChange
         if (assemblyDoc) {
             throw new Error(`Assembly "${assemblyName}" already exists`);
         }
-        const checkDocs = await checkModel.find({ default: true }).exec();
+        const checkDocs = await checkModel.find({ isDefault: true }).exec();
         const checks = checkDocs.map((checkDoc) => checkDoc._id.toHexString());
         const [newAssemblyDoc] = await assemblyModel.create([
             {

package/dist/Changes/AddAssemblyFromFileChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"AddAssemblyFromFileChange.js","sourceRoot":"","sources":["../../src/Changes/AddAssemblyFromFileChange.ts"],"names":[],"mappings":";;;AASA,qDAAsD;AAEtD,6DAAyD;AAyBzD,MAAa,yBAA0B,SAAQ,uCAAkB;IAC/D,QAAQ,GAAG,2BAAoC,CAAA;IAC/C,OAAO,CAAoC;IAE3C,YACE,IAAyC,EACzC,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,IAAI,YAAY;QACd,OAAO,aAAa,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,YAAY,2DAA2D,CAAA;IAC7G,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC,GAAG,OAAO,CAAA;YAC3C,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA;QACtD,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACxC,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QACxB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,CAAC,KAAK,IAAI,OAAO;gBACrB,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,OAAO,EAAE,YAAY,EAAE,OAAO,CAAC;gBAC7D,CAAC,CAAC,IAAI,CAAC,oBAAoB,CAAC,OAAO,EAAE,YAAY,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC,CAAA;QACnE,CAAC;IACH,CAAC;IAED,KAAK,CAAC,sBAAsB,CAC1B,OAAwB,EACxB,YAAoB,EACpB,OAAiD;QAEjD,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QAClC,MAAM,eAAe,GAAG,UAAU,IAAI,MAAM,CAAC,UAAU,CAAC,CAAA;QAExD,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QAC1C,IAAI,CAAC,kBAAkB,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAA;QAC7D,CAAC;QAED,MAAM,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,OAAO,CAAA;QACpD,MAAM,EACJ,aAAa,EACb,UAAU,EACV,SAAS,EACT,YAAY,EACZ,WAAW,EACX,IAAI,GACL,GAAG,OAAO,CAAA;QAEX,MAAM,KAAK,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAC5C,MAAM,UAAU,GAAG,KAAK,EAAE,QAAQ,CAAA;QAClC,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,MAAM,IAAI,KAAK,CAAC,iCAAiC,KAAK,EAAE,EAAE,EAAE,CAAC,CAAA;QAC/D,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA;QAC9C,MAAM,WAAW,GAAG,MAAM,EAAE,QAAQ,CAAA;QACpC,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,MAAM,IAAI,KAAK,CAAC,iCAAiC,MAAM,EAAE,EAAE,EAAE,CAAC,CAAA;QAChE,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA;QAC9C,MAAM,WAAW,GAAG,MAAM,EAAE,QAAQ,CAAA;QACpC,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,MAAM,IAAI,KAAK,CAAC,iCAAiC,MAAM,EAAE,EAAE,EAAE,CAAC,CAAA;QAChE,CAAC;QAED,MAAM,KAAK,GAAG,YAAY,CAAC,aAAa,CAAC,KAAK,CAAC,CAAA;QAC/C,MAAM,GAAG,GAAG,YAAY,CAAC,aAAa,CAAC,MAAM,CAAC,CAAA;QAC9C,MAAM,GAAG,GAAG,YAAY,CAAC,aAAa,CAAC,MAAM,CAAC,CAAA;QAC9C,MAAM,eAAe,GAAG,IAAI,gCAAiB,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,CAAA;QAClE,MAAM,gBAAgB,GAAG,MAAM,eAAe,CAAC,gBAAgB,EAAE,CAAA;QACjE,MAAM,OAAO,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,EAAE,GAAG,CAAC,KAAK,EAAE,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;QAE5D,MAAM,WAAW,GAAG,MAAM,aAAa;aACpC,OAAO,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC;aAC/B,IAAI,EAAE,CAAA;QACT,IAAI,WAAW,EAAE,CAAC;YAChB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,kBAAkB,CAAC,CAAA;QAC9D,CAAC;QACD,MAAM,SAAS,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QACjE,MAAM,MAAM,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAA;QACtE,MAAM,CAAC,cAAc,CAAC,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC;YAClD;gBACE,GAAG,EAAE,IAAI,CAAC,QAAQ;gBAClB,IAAI,EAAE,YAAY;gBAClB,IAAI;gBACJ,MAAM,EAAE,CAAC,CAAC;gBACV,OAAO;gBACP,MAAM;aACP;SACF,CAAC,CAAA;QACF,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,uBAAuB,YAAY,aAAa,cAAc,CAAC,GAAG,GAAG,CACtE,CAAA;QAED,KAAK,MAAM,YAAY,IAAI,gBAAgB,EAAE,CAAC;YAC5C,MAAM,CAAC,YAAY,CAAC,GAAG,MAAM,WAAW,CAAC,MAAM,CAAC;gBAC9C;oBACE,IAAI,EAAE,YAAY;oBAClB,QAAQ,EAAE,cAAc,CAAC,GAAG;oBAC5B,MAAM,EAAE,gBAAgB,CAAC,YAAY,CAAC;oBACtC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;oBAC5D,IAAI;oBACJ,MAAM,EAAE,CAAC,CAAC;iBACX;aACF,CAAC,CAAA;YACF,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,qBAAqB,YAAY,aAAa,YAAY,CAAC,GAAG,GAAG,CAClE,CAAA;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,oBAAoB,CACxB,OAAwB,EACxB,YAAoB,EACpB,MAAc;QAEd,MAAM,EAAE,aAAa,EAAE,UAAU,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QAC9D,oBAAoB;QACpB,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,CAAA;QACvD,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,MAAM,IAAI,KAAK,CAAC,SAAS,MAAM,sBAAsB,CAAC,CAAA;QACxD,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,MAAM,gBAAgB,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAA;QAEzE,6BAA6B;QAC7B,MAAM,WAAW,GAAG,MAAM,aAAa;aACpC,OAAO,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC;aAC/B,IAAI,EAAE,CAAA;QACT,IAAI,WAAW,EAAE,CAAC;YAChB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,kBAAkB,CAAC,CAAA;QAC9D,CAAC;QACD,MAAM,SAAS,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QACjE,MAAM,MAAM,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAA;QACtE,eAAe;QACf,MAAM,CAAC,cAAc,CAAC,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC;YAClD;gBACE,GAAG,EAAE,IAAI,CAAC,QAAQ;gBAClB,IAAI,EAAE,YAAY;gBAClB,IAAI;gBACJ,MAAM,EAAE,CAAC,CAAC;gBACV,OAAO,EAAE,EAAE,EAAE,EAAE,MAAM,EAAE;gBACvB,MAAM;aACP;SACF,CAAC,CAAA;QACF,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,uBAAuB,YAAY,aAAa,cAAc,CAAC,GAAG,GAAG,CACtE,CAAA;QACD,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,eAAe,OAAO,CAAC,IAAI,mBAAmB,cAAc,CAAC,GAAG,GAAG,CACpE,CAAA;QAED,cAAc;QACd,iGAAiG;QACjG,MAAM,IAAI,CAAC,eAAe,CAAC,OAAO,EAAE,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,EAAE,OAAO,CAAC,CAAA;IAC7E,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO,IAAI,yBAAyB,CAClC,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,EAC/B,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AA1LD,8DA0LC"}
+{"version":3,"file":"AddAssemblyFromFileChange.js","sourceRoot":"","sources":["../../src/Changes/AddAssemblyFromFileChange.ts"],"names":[],"mappings":";;;AASA,qDAAsD;AAEtD,6DAAyD;AAyBzD,MAAa,yBAA0B,SAAQ,uCAAkB;IAC/D,QAAQ,GAAG,2BAAoC,CAAA;IAC/C,OAAO,CAAoC;IAE3C,YACE,IAAyC,EACzC,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,IAAI,YAAY;QACd,OAAO,aAAa,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,YAAY,2DAA2D,CAAA;IAC7G,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC,GAAG,OAAO,CAAA;YAC3C,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,YAAY,EAAE,OAAO,EAAE,CAAA;QACtD,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACxC,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QACxB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,CAAC,KAAK,IAAI,OAAO;gBACrB,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,OAAO,EAAE,YAAY,EAAE,OAAO,CAAC;gBAC7D,CAAC,CAAC,IAAI,CAAC,oBAAoB,CAAC,OAAO,EAAE,YAAY,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC,CAAA;QACnE,CAAC;IACH,CAAC;IAED,KAAK,CAAC,sBAAsB,CAC1B,OAAwB,EACxB,YAAoB,EACpB,OAAiD;QAEjD,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QAClC,MAAM,eAAe,GAAG,UAAU,IAAI,MAAM,CAAC,UAAU,CAAC,CAAA;QAExD,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QAC1C,IAAI,CAAC,kBAAkB,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAA;QAC7D,CAAC;QAED,MAAM,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,OAAO,CAAA;QACpD,MAAM,EACJ,aAAa,EACb,UAAU,EACV,SAAS,EACT,YAAY,EACZ,WAAW,EACX,IAAI,GACL,GAAG,OAAO,CAAA;QAEX,MAAM,KAAK,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;QAC5C,MAAM,UAAU,GAAG,KAAK,EAAE,QAAQ,CAAA;QAClC,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,MAAM,IAAI,KAAK,CAAC,iCAAiC,KAAK,EAAE,EAAE,EAAE,CAAC,CAAA;QAC/D,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA;QAC9C,MAAM,WAAW,GAAG,MAAM,EAAE,QAAQ,CAAA;QACpC,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,MAAM,IAAI,KAAK,CAAC,iCAAiC,MAAM,EAAE,EAAE,EAAE,CAAC,CAAA;QAChE,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA;QAC9C,MAAM,WAAW,GAAG,MAAM,EAAE,QAAQ,CAAA;QACpC,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,MAAM,IAAI,KAAK,CAAC,iCAAiC,MAAM,EAAE,EAAE,EAAE,CAAC,CAAA;QAChE,CAAC;QAED,MAAM,KAAK,GAAG,YAAY,CAAC,aAAa,CAAC,KAAK,CAAC,CAAA;QAC/C,MAAM,GAAG,GAAG,YAAY,CAAC,aAAa,CAAC,MAAM,CAAC,CAAA;QAC9C,MAAM,GAAG,GAAG,YAAY,CAAC,aAAa,CAAC,MAAM,CAAC,CAAA;QAC9C,MAAM,eAAe,GAAG,IAAI,gCAAiB,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,CAAA;QAClE,MAAM,gBAAgB,GAAG,MAAM,eAAe,CAAC,gBAAgB,EAAE,CAAA;QACjE,MAAM,OAAO,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,EAAE,GAAG,CAAC,KAAK,EAAE,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;QAE5D,MAAM,WAAW,GAAG,MAAM,aAAa;aACpC,OAAO,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC;aAC/B,IAAI,EAAE,CAAA;QACT,IAAI,WAAW,EAAE,CAAC;YAChB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,kBAAkB,CAAC,CAAA;QAC9D,CAAC;QACD,MAAM,SAAS,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QACnE,MAAM,MAAM,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAA;QACtE,MAAM,CAAC,cAAc,CAAC,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC;YAClD;gBACE,GAAG,EAAE,IAAI,CAAC,QAAQ;gBAClB,IAAI,EAAE,YAAY;gBAClB,IAAI;gBACJ,MAAM,EAAE,CAAC,CAAC;gBACV,OAAO;gBACP,MAAM;aACP;SACF,CAAC,CAAA;QACF,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,uBAAuB,YAAY,aAAa,cAAc,CAAC,GAAG,GAAG,CACtE,CAAA;QAED,KAAK,MAAM,YAAY,IAAI,gBAAgB,EAAE,CAAC;YAC5C,MAAM,CAAC,YAAY,CAAC,GAAG,MAAM,WAAW,CAAC,MAAM,CAAC;gBAC9C;oBACE,IAAI,EAAE,YAAY;oBAClB,QAAQ,EAAE,cAAc,CAAC,GAAG;oBAC5B,MAAM,EAAE,gBAAgB,CAAC,YAAY,CAAC;oBACtC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;oBAC5D,IAAI;oBACJ,MAAM,EAAE,CAAC,CAAC;iBACX;aACF,CAAC,CAAA;YACF,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,qBAAqB,YAAY,aAAa,YAAY,CAAC,GAAG,GAAG,CAClE,CAAA;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,oBAAoB,CACxB,OAAwB,EACxB,YAAoB,EACpB,MAAc;QAEd,MAAM,EAAE,aAAa,EAAE,UAAU,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QAC9D,oBAAoB;QACpB,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,CAAA;QACvD,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,MAAM,IAAI,KAAK,CAAC,SAAS,MAAM,sBAAsB,CAAC,CAAA;QACxD,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,MAAM,gBAAgB,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAA;QAEzE,6BAA6B;QAC7B,MAAM,WAAW,GAAG,MAAM,aAAa;aACpC,OAAO,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,CAAC;aAC/B,IAAI,EAAE,CAAA;QACT,IAAI,WAAW,EAAE,CAAC;YAChB,MAAM,IAAI,KAAK,CAAC,aAAa,YAAY,kBAAkB,CAAC,CAAA;QAC9D,CAAC;QACD,MAAM,SAAS,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QACjE,MAAM,MAAM,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAA;QACtE,eAAe;QACf,MAAM,CAAC,cAAc,CAAC,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC;YAClD;gBACE,GAAG,EAAE,IAAI,CAAC,QAAQ;gBAClB,IAAI,EAAE,YAAY;gBAClB,IAAI;gBACJ,MAAM,EAAE,CAAC,CAAC;gBACV,OAAO,EAAE,EAAE,EAAE,EAAE,MAAM,EAAE;gBACvB,MAAM;aACP;SACF,CAAC,CAAA;QACF,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,uBAAuB,YAAY,aAAa,cAAc,CAAC,GAAG,GAAG,CACtE,CAAA;QACD,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CACjB,eAAe,OAAO,CAAC,IAAI,mBAAmB,cAAc,CAAC,GAAG,GAAG,CACpE,CAAA;QAED,cAAc;QACd,iGAAiG;QACjG,MAAM,IAAI,CAAC,eAAe,CAAC,OAAO,EAAE,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,EAAE,OAAO,CAAC,CAAA;IAC7E,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO,IAAI,yBAAyB,CAClC,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,EAC/B,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AA1LD,8DA0LC"}

package/dist/Changes/AddFeatureChange.js

@@ -113,9 +113,21 @@ class AddFeatureChange extends common_1.FeatureChange {
         for (const change of changes) {
             const { addedFeature, parentFeatureId } = change;
             if (parentFeatureId) {
-                const parentFeature = dataStore.getFeature(parentFeatureId);
+                let parentFeature = dataStore.getFeature(parentFeatureId);
+                // maybe the parent feature hasn't been loaded yet
                 if (!parentFeature) {
-                    throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+                    await dataStore.loadFeatures([
+                        {
+                            assemblyName: assembly,
+                            refName: addedFeature.refSeq,
+                            start: addedFeature.min,
+                            end: addedFeature.max,
+                        },
+                    ]);
+                    parentFeature = dataStore.getFeature(parentFeatureId);
+                    if (!parentFeature) {
+                        throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+                    }
                 }
                 // create an ID for the parent feature if it does not have one
                 if (!parentFeature.attributes.get('_id')) {

package/dist/Changes/AddFeatureChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"AddFeatureChange.js","sourceRoot":"","sources":["../../src/Changes/AddFeatureChange.ts"],"names":[],"mappings":";;;AA4MA,gDAIC;AAhND,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,sDAOkC;AAGlC,+DAA2D;AA0B3D,MAAa,gBAAiB,SAAQ,sBAAa;IACjD,QAAQ,GAAG,kBAA2B,CAAA;IACtC,OAAO,CAA2B;IAElC,YAAY,IAAgC,EAAE,OAAuB;QACnE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IACD,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,4BAA4B,CAAA;IACrC,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,YAAY,EAAE,MAAM,EAAE,WAAW,EAAE,eAAe,EAAE,CAAC,GAAG,OAAO,CAAA;YACxE,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,YAAY;gBACZ,eAAe;gBACf,WAAW;gBACX,MAAM;aACP,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,WAAW,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QAC3E,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAE1C,MAAM,WAAW,GAAG,MAAM,aAAa;aACpC,QAAQ,CAAC,QAAQ,CAAC;aAClB,OAAO,CAAC,OAAO,CAAC;aAChB,IAAI,EAAE,CAAA;QACT,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,MAAM,MAAM,GAAG,gCAAgC,QAAQ,aAAa,CAAA;YACpE,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;YACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;QACzB,CAAC;QAED,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,MAAM,CAAC,KAAK,EAAE,CAAC,YAAY,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;QAErD,mBAAmB;QACnB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;YACnD,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,WAAW,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YACrE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,YAAY,CAAA;YACpC,MAAM,SAAS,GAAG,MAAM,WAAW;iBAChC,QAAQ,CAAC,MAAM,CAAC;iBAChB,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YACT,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,MAAM,IAAI,KAAK,CACb,qCAAqC,QAAQ,iBAAiB,MAAM,aAAa,CAClF,CAAA;YACH,CAAC;YAED,6CAA6C;YAC7C,IAAI,WAAW,EAAE,CAAC;gBAChB,iBAAiB;gBACjB,MAAM,CAAC,aAAa,CAAC,GAAG,MAAM,YAAY,CAAC,MAAM,CAC/C,CAAC,EAAE,GAAG,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,EAC/C,EAAE,OAAO,EAAE,CACZ,CAAA;gBACD,MAAM,CAAC,KAAK,EAAE,CACZ,0BAA0B,aAAa,CAAC,GAAG,kBAAkB,QAAQ,GAAG,CACzE,CAAA;gBACD,UAAU,EAAE,CAAA;YACd,CAAC;iBAAM,CAAC;gBACN,2BAA2B;gBAC3B,IAAI,eAAe,EAAE,CAAC;oBACpB,MAAM,eAAe,GAAG,MAAM,YAAY;yBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC;yBACpC,OAAO,CAAC,OAAO,CAAC;yBAChB,IAAI,EAAE,CAAA;oBACT,IAAI,CAAC,eAAe,EAAE,CAAC;wBACrB,MAAM,IAAI,KAAK,CACb,mCAAmC,eAAe,GAAG,CACtD,CAAA;oBACH,CAAC;oBACD,MAAM,aAAa,GAAG,IAAI,CAAC,gBAAgB,CACzC,eAAe,EACf,eAAe,CAChB,CAAA;oBACD,IAAI,CAAC,aAAa,EAAE,CAAC;wBACnB,MAAM,IAAI,KAAK,CACb,mCAAmC,eAAe,iBAAiB,eAAe,CAAC,GAAG,GAAG,CAC1F,CAAA;oBACH,CAAC;oBACD,IAAI,CAAC,QAAQ,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;oBAC1C,MAAM,QAAQ,GAAG,IAAI,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAA;oBACtD,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAC,CAAA;oBAC7C,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;gBAC9B,CAAC;qBAAM,CAAC;oBACN,MAAM,QAAQ,GAAG,IAAI,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAA;oBACtD,MAAM,QAAQ,GAAG,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAC,CAAA;oBACnC,MAAM,CAAC,aAAa,CAAC,GAAG,MAAM,YAAY,CAAC,MAAM,CAC/C,CAAC,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,GAAG,YAAY,EAAE,CAAC,EAClD,EAAE,OAAO,EAAE,CACZ,CAAA;oBACD,MAAM,CAAC,OAAO,EAAE,CAAC,gBAAgB,aAAa,CAAC,GAAG,GAAG,CAAC,CAAA;gBACxD,CAAC;YACH,CAAC;YACD,UAAU,EAAE,CAAA;QACd,CAAC;QACD,MAAM,CAAC,KAAK,EAAE,CAAC,SAAS,UAAU,gCAAgC,CAAC,CAAA;IACrE,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QAClC,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,YAAY,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YAChD,IAAI,eAAe,EAAE,CAAC;gBACpB,MAAM,aAAa,GAAG,SAAS,CAAC,UAAU,CAAC,eAAe,CAAC,CAAA;gBAC3D,IAAI,CAAC,aAAa,EAAE,CAAC;oBACnB,MAAM,IAAI,KAAK,CAAC,kCAAkC,eAAe,GAAG,CAAC,CAAA;gBACvE,CAAC;gBACD,8DAA8D;gBAC9D,IAAI,CAAC,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;oBACzC,aAAa,CAAC,YAAY,CAAC,KAAK,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,CAAA;gBACxD,CAAC;gBACD,aAAa,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;YACtC,CAAC;iBAAM,CAAC;gBACN,SAAS,CAAC,UAAU,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;YAC9C,CAAC;QACH,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAC;YACvE,cAAc,EAAE,gBAAgB,CAAC,YAAY;YAC7C,eAAe,EAAE,gBAAgB,CAAC,eAAe;SAClD,CAAC,CAAC,CAAA;QAEH,OAAO,IAAI,yCAAmB,CAC5B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,qBAAqB;YAC/B,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAnKD,4CAmKC;AAED,SAAgB,kBAAkB,CAChC,MAAe;IAEf,OAAQ,MAA2B,CAAC,QAAQ,KAAK,kBAAkB,CAAA;AACrE,CAAC"}
+{"version":3,"file":"AddFeatureChange.js","sourceRoot":"","sources":["../../src/Changes/AddFeatureChange.ts"],"names":[],"mappings":";;;AA0NA,gDAIC;AA9ND,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,sDAOkC;AAGlC,+DAA2D;AA0B3D,MAAa,gBAAiB,SAAQ,sBAAa;IACjD,QAAQ,GAAG,kBAA2B,CAAA;IACtC,OAAO,CAA2B;IAElC,YAAY,IAAgC,EAAE,OAAuB;QACnE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IACD,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,4BAA4B,CAAA;IACrC,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,YAAY,EAAE,MAAM,EAAE,WAAW,EAAE,eAAe,EAAE,CAAC,GAAG,OAAO,CAAA;YACxE,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,YAAY;gBACZ,eAAe;gBACf,WAAW;gBACX,MAAM;aACP,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,WAAW,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QAC3E,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAE1C,MAAM,WAAW,GAAG,MAAM,aAAa;aACpC,QAAQ,CAAC,QAAQ,CAAC;aAClB,OAAO,CAAC,OAAO,CAAC;aAChB,IAAI,EAAE,CAAA;QACT,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,MAAM,MAAM,GAAG,gCAAgC,QAAQ,aAAa,CAAA;YACpE,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;YACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;QACzB,CAAC;QAED,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,MAAM,CAAC,KAAK,EAAE,CAAC,YAAY,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;QAErD,mBAAmB;QACnB,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;YACnD,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,WAAW,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YACrE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,YAAY,CAAA;YACpC,MAAM,SAAS,GAAG,MAAM,WAAW;iBAChC,QAAQ,CAAC,MAAM,CAAC;iBAChB,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YACT,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,MAAM,IAAI,KAAK,CACb,qCAAqC,QAAQ,iBAAiB,MAAM,aAAa,CAClF,CAAA;YACH,CAAC;YAED,6CAA6C;YAC7C,IAAI,WAAW,EAAE,CAAC;gBAChB,iBAAiB;gBACjB,MAAM,CAAC,aAAa,CAAC,GAAG,MAAM,YAAY,CAAC,MAAM,CAC/C,CAAC,EAAE,GAAG,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,EAC/C,EAAE,OAAO,EAAE,CACZ,CAAA;gBACD,MAAM,CAAC,KAAK,EAAE,CACZ,0BAA0B,aAAa,CAAC,GAAG,kBAAkB,QAAQ,GAAG,CACzE,CAAA;gBACD,UAAU,EAAE,CAAA;YACd,CAAC;iBAAM,CAAC;gBACN,2BAA2B;gBAC3B,IAAI,eAAe,EAAE,CAAC;oBACpB,MAAM,eAAe,GAAG,MAAM,YAAY;yBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC;yBACpC,OAAO,CAAC,OAAO,CAAC;yBAChB,IAAI,EAAE,CAAA;oBACT,IAAI,CAAC,eAAe,EAAE,CAAC;wBACrB,MAAM,IAAI,KAAK,CACb,mCAAmC,eAAe,GAAG,CACtD,CAAA;oBACH,CAAC;oBACD,MAAM,aAAa,GAAG,IAAI,CAAC,gBAAgB,CACzC,eAAe,EACf,eAAe,CAChB,CAAA;oBACD,IAAI,CAAC,aAAa,EAAE,CAAC;wBACnB,MAAM,IAAI,KAAK,CACb,mCAAmC,eAAe,iBAAiB,eAAe,CAAC,GAAG,GAAG,CAC1F,CAAA;oBACH,CAAC;oBACD,IAAI,CAAC,QAAQ,CAAC,aAAa,EAAE,YAAY,CAAC,CAAA;oBAC1C,MAAM,QAAQ,GAAG,IAAI,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAA;oBACtD,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAC,CAAA;oBAC7C,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;gBAC9B,CAAC;qBAAM,CAAC;oBACN,MAAM,QAAQ,GAAG,IAAI,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAA;oBACtD,MAAM,QAAQ,GAAG,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAC,CAAA;oBACnC,MAAM,CAAC,aAAa,CAAC,GAAG,MAAM,YAAY,CAAC,MAAM,CAC/C,CAAC,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,GAAG,YAAY,EAAE,CAAC,EAClD,EAAE,OAAO,EAAE,CACZ,CAAA;oBACD,MAAM,CAAC,OAAO,EAAE,CAAC,gBAAgB,aAAa,CAAC,GAAG,GAAG,CAAC,CAAA;gBACxD,CAAC;YACH,CAAC;YACD,UAAU,EAAE,CAAA;QACd,CAAC;QACD,MAAM,CAAC,KAAK,EAAE,CAAC,SAAS,UAAU,gCAAgC,CAAC,CAAA;IACrE,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QAClC,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,YAAY,EAAE,eAAe,EAAE,GAAG,MAAM,CAAA;YAChD,IAAI,eAAe,EAAE,CAAC;gBACpB,IAAI,aAAa,GAAG,SAAS,CAAC,UAAU,CAAC,eAAe,CAAC,CAAA;gBACzD,kDAAkD;gBAClD,IAAI,CAAC,aAAa,EAAE,CAAC;oBACnB,MAAM,SAAS,CAAC,YAAY,CAAC;wBAC3B;4BACE,YAAY,EAAE,QAAQ;4BACtB,OAAO,EAAE,YAAY,CAAC,MAAM;4BAC5B,KAAK,EAAE,YAAY,CAAC,GAAG;4BACvB,GAAG,EAAE,YAAY,CAAC,GAAG;yBACtB;qBACF,CAAC,CAAA;oBACF,aAAa,GAAG,SAAS,CAAC,UAAU,CAAC,eAAe,CAAC,CAAA;oBACrD,IAAI,CAAC,aAAa,EAAE,CAAC;wBACnB,MAAM,IAAI,KAAK,CACb,kCAAkC,eAAe,GAAG,CACrD,CAAA;oBACH,CAAC;gBACH,CAAC;gBACD,8DAA8D;gBAC9D,IAAI,CAAC,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;oBACzC,aAAa,CAAC,YAAY,CAAC,KAAK,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,CAAA;gBACxD,CAAC;gBACD,aAAa,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;YACtC,CAAC;iBAAM,CAAC;gBACN,SAAS,CAAC,UAAU,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;YAC9C,CAAC;QACH,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAC;YACvE,cAAc,EAAE,gBAAgB,CAAC,YAAY;YAC7C,eAAe,EAAE,gBAAgB,CAAC,eAAe;SAClD,CAAC,CAAC,CAAA;QAEH,OAAO,IAAI,yCAAmB,CAC5B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,qBAAqB;YAC/B,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAjLD,4CAiLC;AAED,SAAgB,kBAAkB,CAChC,MAAe;IAEf,OAAQ,MAA2B,CAAC,QAAQ,KAAK,kBAAkB,CAAA;AACrE,CAAC"}

package/dist/Changes/AddFeaturesFromFileChange.d.ts

@@ -6,6 +6,9 @@ export interface SerializedAddFeaturesFromFileChangeBase extends SerializedAssem
 }
 export interface AddFeaturesFromFileChangeDetails {
     fileId: string;
+    parseOptions?: {
+        bufferSize: number;
+    };
 }
 export interface SerializedAddFeaturesFromFileChangeSingle extends SerializedAddFeaturesFromFileChangeBase, AddFeaturesFromFileChangeDetails {
 }

package/dist/Changes/AddFeaturesFromFileChange.js

@@ -35,7 +35,7 @@ class AddFeaturesFromFileChange extends FromFileBaseChange_1.FromFileBaseChange
             await this.removeExistingFeatures(backend);
         }
         for (const change of changes) {
-            const { fileId } = change;
+            const { fileId, parseOptions } = change;
             const { FILE_UPLOAD_FOLDER } = process.env;
             if (!FILE_UPLOAD_FOLDER) {
                 throw new Error('No FILE_UPLOAD_FOLDER found in .env file');
@@ -47,8 +47,11 @@ class AddFeaturesFromFileChange extends FromFileBaseChange_1.FromFileBaseChange
             }
             logger.debug?.(`FileId "${fileId}", checksum "${fileDoc.checksum}"`);
             // Read data from compressed file and parse the content
-            const featureStream = filesService.parseGFF3(filesService.getFileStream(fileDoc));
+            const { bufferSize = 10_000 } = parseOptions ?? {};
+            const featureStream = filesService.parseGFF3(filesService.getFileStream(fileDoc), { bufferSize });
             let featureCount = 0;
+            // @ts-expect-error type is wrong here
+            // eslint-disable-next-line @typescript-eslint/await-thenable
             for await (const f of featureStream) {
                 const gff3Feature = f;
                 // Add new feature into database

package/dist/Changes/AddFeaturesFromFileChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"AddFeaturesFromFileChange.js","sourceRoot":"","sources":["../../src/Changes/AddFeaturesFromFileChange.ts"],"names":[],"mappings":";;;AAUA,6DAAyD;AAyBzD,MAAa,yBAA0B,SAAQ,uCAAkB;IAC/D,QAAQ,GAAG,2BAAoC,CAAA;IAC/C,OAAO,CAAoC;IAC3C,sBAAsB,GAAG,KAAK,CAAA;IAE9B,YACE,IAAyC,EACzC,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,sBAAsB,GAAG,IAAI,CAAC,sBAAsB,IAAI,KAAK,CAAA;QAClE,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,iEAAiE,CAAA;IAC1E,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,sBAAsB,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC,GAAG,OAAO,CAAA;YAC5B,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,EAAE,sBAAsB,EAAE,CAAA;QAC/D,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,sBAAsB,EAAE,CAAA;IAChE,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,SAAS,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;QAC3C,MAAM,EAAE,OAAO,EAAE,sBAAsB,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAExD,IAAI,sBAAsB,EAAE,CAAC;YAC3B,MAAM,IAAI,CAAC,sBAAsB,CAAC,OAAO,CAAC,CAAA;QAC5C,CAAC;QAED,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;YAEzB,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;YAC1C,IAAI,CAAC,kBAAkB,EAAE,CAAC;gBACxB,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAA;YAC7D,CAAC;YACD,oBAAoB;YACpB,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,CAAA;YACvD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,SAAS,MAAM,sBAAsB,CAAC,CAAA;YACxD,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,MAAM,gBAAgB,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAA;YAEpE,uDAAuD;YACvD,MAAM,aAAa,GAAG,YAAY,CAAC,SAAS,CAC1C,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,CACpC,CAAA;YACD,IAAI,YAAY,GAAG,CAAC,CAAA;YACpB,IAAI,KAAK,EAAE,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC;gBACpC,MAAM,WAAW,GAAG,CAAgB,CAAA;gBAEpC,gCAAgC;gBAChC,iGAAiG;gBACjG,MAAM,IAAI,CAAC,gBAAgB,CAAC,WAAW,EAAE,OAAO,CAAC,CAAA;gBACjD,YAAY,EAAE,CAAA;gBACd,IAAI,YAAY,GAAG,IAAI,KAAK,CAAC,EAAE,CAAC;oBAC9B,MAAM,CAAC,KAAK,EAAE,CAAC,aAAa,YAAY,WAAW,CAAC,CAAA;gBACtD,CAAC;YACH,CAAC;QACH,CAAC;QACD,MAAM,CAAC,KAAK,EAAE,CAAC,mCAAmC,CAAC,CAAA;IACrD,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO,IAAI,yBAAyB,CAClC,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,EAC/B,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAzFD,8DAyFC"}
+{"version":3,"file":"AddFeaturesFromFileChange.js","sourceRoot":"","sources":["../../src/Changes/AddFeaturesFromFileChange.ts"],"names":[],"mappings":";;;AAUA,6DAAyD;AA0BzD,MAAa,yBAA0B,SAAQ,uCAAkB;IAC/D,QAAQ,GAAG,2BAAoC,CAAA;IAC/C,OAAO,CAAoC;IAC3C,sBAAsB,GAAG,KAAK,CAAA;IAE9B,YACE,IAAyC,EACzC,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,sBAAsB,GAAG,IAAI,CAAC,sBAAsB,IAAI,KAAK,CAAA;QAClE,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,iEAAiE,CAAA;IAC1E,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,sBAAsB,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC,GAAG,OAAO,CAAA;YAC5B,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,EAAE,sBAAsB,EAAE,CAAA;QAC/D,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,sBAAsB,EAAE,CAAA;IAChE,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,SAAS,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;QAC3C,MAAM,EAAE,OAAO,EAAE,sBAAsB,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAExD,IAAI,sBAAsB,EAAE,CAAC;YAC3B,MAAM,IAAI,CAAC,sBAAsB,CAAC,OAAO,CAAC,CAAA;QAC5C,CAAC;QAED,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,CAAA;YAEvC,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;YAC1C,IAAI,CAAC,kBAAkB,EAAE,CAAC;gBACxB,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAA;YAC7D,CAAC;YACD,oBAAoB;YACpB,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,CAAA;YACvD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,SAAS,MAAM,sBAAsB,CAAC,CAAA;YACxD,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,WAAW,MAAM,gBAAgB,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAA;YAEpE,uDAAuD;YACvD,MAAM,EAAE,UAAU,GAAG,MAAM,EAAE,GAAG,YAAY,IAAI,EAAE,CAAA;YAClD,MAAM,aAAa,GAAG,YAAY,CAAC,SAAS,CAC1C,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,EACnC,EAAE,UAAU,EAAE,CACf,CAAA;YACD,IAAI,YAAY,GAAG,CAAC,CAAA;YACpB,sCAAsC;YACtC,6DAA6D;YAC7D,IAAI,KAAK,EAAE,MAAM,CAAC,IAAI,aAAa,EAAE,CAAC;gBACpC,MAAM,WAAW,GAAG,CAAgB,CAAA;gBAEpC,gCAAgC;gBAChC,iGAAiG;gBACjG,MAAM,IAAI,CAAC,gBAAgB,CAAC,WAAW,EAAE,OAAO,CAAC,CAAA;gBACjD,YAAY,EAAE,CAAA;gBACd,IAAI,YAAY,GAAG,IAAI,KAAK,CAAC,EAAE,CAAC;oBAC9B,MAAM,CAAC,KAAK,EAAE,CAAC,aAAa,YAAY,WAAW,CAAC,CAAA;gBACtD,CAAC;YACH,CAAC;QACH,CAAC;QACD,MAAM,CAAC,KAAK,EAAE,CAAC,mCAAmC,CAAC,CAAA;IACrD,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACpD,OAAO,IAAI,yBAAyB,CAClC,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,EAC/B,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AA7FD,8DA6FC"}

package/dist/Changes/AddRefSeqAliasesChange.js

@@ -16,19 +16,14 @@ class AddRefSeqAliasesChange extends common_1.AssemblySpecificChange {
         if (!assembly) {
             throw new Error(`assembly ${this.assembly} not found`);
         }
-        const sessionAliases = assembly.refNameAliases;
-        const sessionLCAliases = assembly.lowerCaseRefNameAliases;
-        if (!sessionAliases || !sessionLCAliases) {
-            throw new Error('Session refNameAliases not found in assembly');
-        }
+        const sessionAliases = assembly.refNameAliases ?? {};
         for (const refSeqAlias of this.refSeqAliases) {
             const { aliases, refName } = refSeqAlias;
             for (const alias of aliases) {
                 sessionAliases[alias] = refName;
-                sessionLCAliases[alias.toLowerCase()] = refName;
             }
         }
-        assembly.setRefNameAliases(sessionAliases, sessionLCAliases);
+        assembly.setRefNameAliases(sessionAliases);
         return Promise.resolve();
     }
     getInverse() {

package/dist/Changes/AddRefSeqAliasesChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"AddRefSeqAliasesChange.js","sourceRoot":"","sources":["../../src/Changes/AddRefSeqAliasesChange.ts"],"names":[],"mappings":";;;AAAA,sDAQkC;AAClC,6CAA+C;AAa/C,MAAa,sBAAuB,SAAQ,+BAAsB;IAChE,QAAQ,GAAG,wBAAiC,CAAA;IAC5C,aAAa,CAA2B;IAExC,YAAY,IAAmC,EAAE,OAAuB;QACtE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;IACzC,CAAC;IAED,eAAe,CAAC,eAAgC;QAC9C,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,eAAe,CAAC,CAAA;QACvD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAA;QACnD,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,MAAM,IAAI,KAAK,CAAC,YAAY,IAAI,CAAC,QAAQ,YAAY,CAAC,CAAA;QACxD,CAAC;QACD,MAAM,cAAc,GAAG,QAAQ,CAAC,cAAc,CAAA;QAC9C,MAAM,gBAAgB,GAAG,QAAQ,CAAC,uBAAuB,CAAA;QAEzD,IAAI,CAAC,cAAc,IAAI,CAAC,gBAAgB,EAAE,CAAC;YACzC,MAAM,IAAI,KAAK,CAAC,8CAA8C,CAAC,CAAA;QACjE,CAAC;QAED,KAAK,MAAM,WAAW,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;YAC7C,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;YACxC,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;gBAC5B,cAAc,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;gBAC/B,gBAAgB,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,GAAG,OAAO,CAAA;YACjD,CAAC;QACH,CAAC;QACD,QAAQ,CAAC,iBAAiB,CAAC,cAAc,EAAE,gBAAgB,CAAC,CAAA;QAC5D,OAAO,OAAO,CAAC,OAAO,EAAE,CAAA;IAC1B,CAAC;IAED,UAAU;QACR,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;IAC5C,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,aAAa,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAClD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,aAAa,EAAE,CAAA;IAC9C,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,WAAW,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACxC,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;QAEhD,KAAK,MAAM,WAAW,IAAI,aAAa,EAAE,CAAC;YACxC,MAAM,CAAC,KAAK,EAAE,CACZ,wCAAwC,QAAQ,kBAAkB,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,EAAE,CAChG,CAAA;YACD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;YACxC,MAAM,WAAW;iBACd,SAAS,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,OAAO,EAAE,EAAE,CAAC;iBAC7D,OAAO,CAAC,OAAO,CAAC,CAAA;QACrB,CAAC;IACH,CAAC;IAED,kBAAkB,CAAC,QAA4B;QAC7C,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;IAC5C,CAAC;IAED,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,iCAAiC,CAAA;IAC1C,CAAC;CACF;AAjED,wDAiEC"}
+{"version":3,"file":"AddRefSeqAliasesChange.js","sourceRoot":"","sources":["../../src/Changes/AddRefSeqAliasesChange.ts"],"names":[],"mappings":";;;AAAA,sDAQkC;AAClC,6CAA+C;AAa/C,MAAa,sBAAuB,SAAQ,+BAAsB;IAChE,QAAQ,GAAG,wBAAiC,CAAA;IAC5C,aAAa,CAA2B;IAExC,YAAY,IAAmC,EAAE,OAAuB;QACtE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;IACzC,CAAC;IAED,eAAe,CAAC,eAAgC;QAC9C,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,eAAe,CAAC,CAAA;QACvD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAA;QACnD,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,MAAM,IAAI,KAAK,CAAC,YAAY,IAAI,CAAC,QAAQ,YAAY,CAAC,CAAA;QACxD,CAAC;QACD,MAAM,cAAc,GAAG,QAAQ,CAAC,cAAc,IAAI,EAAE,CAAA;QAEpD,KAAK,MAAM,WAAW,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;YAC7C,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;YACxC,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;gBAC5B,cAAc,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;YACjC,CAAC;QACH,CAAC;QACD,QAAQ,CAAC,iBAAiB,CAAC,cAAc,CAAC,CAAA;QAC1C,OAAO,OAAO,CAAC,OAAO,EAAE,CAAA;IAC1B,CAAC;IAED,UAAU;QACR,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;IAC5C,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,aAAa,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAClD,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,aAAa,EAAE,CAAA;IAC9C,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,WAAW,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACxC,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;QAEhD,KAAK,MAAM,WAAW,IAAI,aAAa,EAAE,CAAC;YACxC,MAAM,CAAC,KAAK,EAAE,CACZ,wCAAwC,QAAQ,kBAAkB,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,EAAE,CAChG,CAAA;YACD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;YACxC,MAAM,WAAW;iBACd,SAAS,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,OAAO,EAAE,EAAE,CAAC;iBAC7D,OAAO,CAAC,OAAO,CAAC,CAAA;QACrB,CAAC;IACH,CAAC;IAED,kBAAkB,CAAC,QAA4B;QAC7C,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;IAC5C,CAAC;IAED,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,iCAAiC,CAAA;IAC1C,CAAC;CACF;AA3DD,wDA2DC"}

package/dist/Changes/FromFileBaseChange.js

@@ -1,10 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.FromFileBaseChange = void 0;
-/* eslint-disable @typescript-eslint/restrict-plus-operands */
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
-/* eslint-disable @typescript-eslint/no-unsafe-member-access */
-/* eslint-disable @typescript-eslint/no-unsafe-call */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
 const common_1 = require("@apollo-annotation/common");
 const GFF3_1 = require("../GFF3");
@@ -26,8 +23,11 @@ class FromFileBaseChange extends common_1.AssemblySpecificChange {
         let parsingStarted = false;
         logger.debug?.('starting sequence stream');
         let lineCount = 0;
+        const decoder = new TextDecoder();
+        // @ts-expect-error type is wrong here
+        // eslint-disable-next-line @typescript-eslint/await-thenable
         for await (const data of sequenceStream) {
-            const chunk = data.toString();
+            const chunk = decoder.decode(data);
             lastLineIsIncomplete = !chunk.endsWith('\n');
             // chunk is small enough that you can split the whole thing into lines without having to make it into smaller chunks first.
             const lines = chunk.split(/\r?\n/);
@@ -36,9 +36,9 @@ class FromFileBaseChange extends common_1.AssemblySpecificChange {
                 incompleteLine = '';
             }
             if (lastLineIsIncomplete) {
-                incompleteLine = lines.pop() || '';
+                incompleteLine = lines.pop() ?? '';
             }
-            for await (const line of lines) {
+            for (const line of lines) {
                 lineCount++;
                 if (lineCount % 1_000_000 === 0) {
                     logger.debug?.(`Processed ${lineCount} lines`);

package/dist/Changes/FromFileBaseChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"FromFileBaseChange.js","sourceRoot":"","sources":["../../src/Changes/FromFileBaseChange.ts"],"names":[],"mappings":";;;AAAA,8DAA8D;AAC9D,4DAA4D;AAC5D,+DAA+D;AAC/D,sDAAsD;AACtD,0DAA0D;AAC1D,sDAGkC;AAOlC,kCAAiD;AAEjD,MAAsB,kBAAmB,SAAQ,+BAAsB;IACrE,KAAK,CAAC,eAAe,CACnB,OAAqB,EACrB,QAAgB,EAChB,OAAwB;QAExB,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACvB,MAAM,EAAE,YAAY,EAAE,gBAAgB,EAAE,WAAW,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QACrE,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QAClC,MAAM,eAAe,GAAG,UAAU,IAAI,MAAM,CAAC,UAAU,CAAC,CAAA;QACxD,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,IAAI,SAAqC,CAAA;QACzC,IAAI,gBAAgB,GAAG,OAAO,CAAC,IAAI,KAAK,aAAa,CAAA;QAErD,uDAAuD;QACvD,MAAM,cAAc,GAAG,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;QAC1D,IAAI,cAAc,GAAG,EAAE,CAAA;QACvB,IAAI,cAAc,GAAG,EAAE,CAAA;QACvB,IAAI,oBAAoB,GAAG,IAAI,CAAA;QAC/B,IAAI,cAAc,GAAG,KAAK,CAAA;QAC1B,MAAM,CAAC,KAAK,EAAE,CAAC,0BAA0B,CAAC,CAAA;QAC1C,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,IAAI,KAAK,EAAE,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;YACxC,MAAM,KAAK,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAA;YAC7B,oBAAoB,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;YAC5C,2HAA2H;YAC3H,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;YAClC,IAAI,cAAc,EAAE,CAAC;gBACnB,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,cAAc,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAA;gBACzC,cAAc,GAAG,EAAE,CAAA;YACrB,CAAC;YACD,IAAI,oBAAoB,EAAE,CAAC;gBACzB,cAAc,GAAG,KAAK,CAAC,GAAG,EAAE,IAAI,EAAE,CAAA;YACpC,CAAC;YACD,IAAI,KAAK,EAAE,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;gBAC/B,SAAS,EAAE,CAAA;gBACX,IAAI,SAAS,GAAG,SAAS,KAAK,CAAC,EAAE,CAAC;oBAChC,MAAM,CAAC,KAAK,EAAE,CAAC,aAAa,SAAS,QAAQ,CAAC,CAAA;gBAChD,CAAC;gBACD,0EAA0E;gBAC1E,IAAI,CAAC,gBAAgB,EAAE,CAAC;oBACtB,IAAI,IAAI,CAAC,IAAI,EAAE,KAAK,SAAS,EAAE,CAAC;wBAC9B,gBAAgB,GAAG,IAAI,CAAA;oBACzB,CAAC;oBACD,SAAQ;gBACV,CAAC;gBACD,MAAM,cAAc,GAAG,mBAAmB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;gBACrD,8DAA8D;gBAC9D,IAAI,cAAc,EAAE,CAAC;oBACnB,cAAc,GAAG,IAAI,CAAA;oBACrB,MAAM,CAAC,KAAK,EAAE,CACZ,wCAAwC,cAAc,CAAC,CAAC,CAAC,GAAG,CAC7D,CAAA;oBAED,mGAAmG;oBACnG,IAAI,cAAc,KAAK,EAAE,EAAE,CAAC;wBAC1B,IAAI,CAAC,SAAS,EAAE,CAAC;4BACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;wBAC7C,CAAC;wBACD,SAAS,IAAI,cAAc,CAAC,MAAM,CAAA;wBAClC,iGAAiG;wBACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;4BAC5B;gCACE,MAAM,EAAE,SAAS,CAAC,GAAG;gCACrB,CAAC,EAAE,UAAU;gCACb,QAAQ,EAAE,cAAc;gCACxB,IAAI;gCACJ,MAAM,EAAE,CAAC,CAAC;6BACX;yBACF,CAAC,CAAA;wBACF,cAAc,GAAG,EAAE,CAAA;oBACrB,CAAC;oBACD,MAAM,SAAS,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAA;oBACjD,iEAAiE;oBACjE,SAAS,GAAG,CAAC,CAAA;oBACb,UAAU,GAAG,CAAC,CAAA;oBAEd,MAAM,IAAI,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAA;oBACrC,MAAM,WAAW,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAA;oBAErE,iGAAiG;oBACjG,MAAM,CAAC,YAAY,CAAC,GAAG,MAAM,WAAW,CAAC,MAAM,CAAC;wBAC9C;4BACE,IAAI;4BACJ,WAAW;4BACX,QAAQ;4BACR,MAAM,EAAE,CAAC;4BACT,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;4BAC5D,IAAI;4BACJ,MAAM,EAAE,CAAC,CAAC;yBACX;qBACF,CAAC,CAAA;oBACF,MAAM,CAAC,KAAK,EAAE,CACZ,qBAAqB,IAAI,YAAY,WAAW,aAAa,YAAY,CAAC,GAAG,GAAG,CACjF,CAAA;oBACD,SAAS,GAAG,YAAY,CAAA;gBAC1B,CAAC;qBAAM,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;oBAC3B,IAAI,CAAC,SAAS,EAAE,CAAC;wBACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;oBAC7C,CAAC;oBACD,MAAM,EAAE,GAAG,EAAE,SAAS,EAAE,GAAG,SAAS,CAAA;oBACpC,cAAc,IAAI,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;oBAC5C,4DAA4D;oBAC5D,OAAO,cAAc,CAAC,MAAM,IAAI,SAAS,EAAE,CAAC;wBAC1C,MAAM,QAAQ,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAA;wBACnD,SAAS,IAAI,QAAQ,CAAC,MAAM,CAAA;wBAC5B,iGAAiG;wBACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;4BAC5B,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC,EAAE,UAAU,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE;yBAC3D,CAAC,CAAA;wBACF,UAAU,EAAE,CAAA;wBACZ,yBAAyB;wBACzB,cAAc,GAAG,cAAc,CAAC,KAAK,CAAC,SAAS,CAAC,CAAA;oBAClD,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QACD,IAAI,CAAC,cAAc,EAAE,CAAC;YACpB,MAAM,IAAI,KAAK,CAAC,sCAAsC,CAAC,CAAA;QACzD,CAAC;QAED,IAAI,cAAc,IAAI,oBAAoB,EAAE,CAAC;YAC3C,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;YAC7C,CAAC;YACD,yEAAyE;YACzE,IAAI,oBAAoB,EAAE,CAAC;gBACzB,cAAc,IAAI,cAAc,CAAA;YAClC,CAAC;YACD,SAAS,IAAI,cAAc,CAAC,MAAM,CAAA;YAClC,MAAM,CAAC,OAAO,EAAE,CACd,4CAA4C,SAAS,CAAC,GAAG,YAAY,UAAU,oCAAoC,SAAS,OAAO,cAAc,GAAG,CACrJ,CAAA;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,gCAAgC,UAAU,QAAQ,SAAS,CAAC,GAAG,GAAG,CACnE,CAAA;YACD,iGAAiG;YACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;gBAC5B;oBACE,MAAM,EAAE,SAAS,CAAC,GAAG;oBACrB,CAAC,EAAE,UAAU;oBACb,QAAQ,EAAE,cAAc;oBACxB,IAAI;oBACJ,MAAM,EAAE,CAAC,CAAC;iBACX;aACF,CAAC,CAAA;YACF,MAAM,SAAS,CAAC,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAA;QAClD,CAAC;IACH,CAAC;IAEO,WAAW,GAAG,IAAI,GAAG,EAA0B,CAAA;IAEvD,KAAK,CAAC,sBAAsB,CAAC,OAAwB;QACnD,MAAM,EAAE,YAAY,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAC7C,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACjC,MAAM,CAAC,KAAK,EAAE,CAAC,6CAA6C,QAAQ,EAAE,CAAC,CAAA;QAEvE,MAAM,OAAO,GAAqB,MAAM,WAAW;aAChD,IAAI,CAAC,EAAE,QAAQ,EAAE,CAAC;aAClB,IAAI,EAAE,CAAA;QAET,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,YAAY,CAAC,UAAU,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC,CAAA;QACvD,CAAC;IACH,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,WAAwB,EAAE,OAAwB;QACvE,MAAM,EAAE,YAAY,EAAE,WAAW,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QACnD,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QAEtC,MAAM,CAAC,EAAE,MAAM,EAAE,OAAO,EAAE,CAAC,GAAG,WAAW,CAAA;QACzC,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,MAAM,IAAI,KAAK,CACb,qCAAqC,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,EAAE,CACnE,CAAA;QACH,CAAC;QACD,IAAI,SAAS,GAAG,WAAW,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;QACxC,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,SAAS;gBACP,CAAC,MAAM,WAAW,CAAC,OAAO,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;oBAC/D,SAAS,CAAA;YACX,IAAI,SAAS,EAAE,CAAC;gBACd,WAAW,CAAC,GAAG,CAAC,OAAO,EAAE,SAAS,CAAC,CAAA;YACrC,CAAC;QACH,CAAC;QACD,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CACb,qCAAqC,QAAQ,iBAAiB,OAAO,aAAa,CACnF,CAAA;QACH,CAAC;QACD,wCAAwC;QACxC,MAAM,UAAU,GAAa,EAAE,CAAA;QAE/B,MAAM,UAAU,GAAG,IAAA,8BAAuB,EACxC,WAAW,EACX,SAAS,CAAC,GAAG,EACb,UAAU,CACX,CAAA;QAED,iBAAiB;QACjB,iGAAiG;QACjG,MAAM,YAAY,CAAC,MAAM,CAAC;YACxB,EAAE,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE;SACxD,CAAC,CAAA;IACJ,CAAC;CACF;AA9MD,gDA8MC"}
+{"version":3,"file":"FromFileBaseChange.js","sourceRoot":"","sources":["../../src/Changes/FromFileBaseChange.ts"],"names":[],"mappings":";;;AAAA,4DAA4D;AAC5D,0DAA0D;AAC1D,sDAGkC;AAOlC,kCAAiD;AAEjD,MAAsB,kBAAmB,SAAQ,+BAAsB;IACrE,KAAK,CAAC,eAAe,CACnB,OAAqB,EACrB,QAAgB,EAChB,OAAwB;QAExB,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACvB,MAAM,EAAE,YAAY,EAAE,gBAAgB,EAAE,WAAW,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QACrE,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QAClC,MAAM,eAAe,GAAG,UAAU,IAAI,MAAM,CAAC,UAAU,CAAC,CAAA;QACxD,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,IAAI,SAAqC,CAAA;QACzC,IAAI,gBAAgB,GAAG,OAAO,CAAC,IAAI,KAAK,aAAa,CAAA;QAErD,uDAAuD;QACvD,MAAM,cAAc,GAAG,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;QAC1D,IAAI,cAAc,GAAG,EAAE,CAAA;QACvB,IAAI,cAAc,GAAG,EAAE,CAAA;QACvB,IAAI,oBAAoB,GAAG,IAAI,CAAA;QAC/B,IAAI,cAAc,GAAG,KAAK,CAAA;QAC1B,MAAM,CAAC,KAAK,EAAE,CAAC,0BAA0B,CAAC,CAAA;QAC1C,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;QACjC,sCAAsC;QACtC,6DAA6D;QAC7D,IAAI,KAAK,EAAE,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;YACxC,MAAM,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YAClC,oBAAoB,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;YAC5C,2HAA2H;YAC3H,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;YAClC,IAAI,cAAc,EAAE,CAAC;gBACnB,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,cAAc,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAA;gBACzC,cAAc,GAAG,EAAE,CAAA;YACrB,CAAC;YACD,IAAI,oBAAoB,EAAE,CAAC;gBACzB,cAAc,GAAG,KAAK,CAAC,GAAG,EAAE,IAAI,EAAE,CAAA;YACpC,CAAC;YACD,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;gBACzB,SAAS,EAAE,CAAA;gBACX,IAAI,SAAS,GAAG,SAAS,KAAK,CAAC,EAAE,CAAC;oBAChC,MAAM,CAAC,KAAK,EAAE,CAAC,aAAa,SAAS,QAAQ,CAAC,CAAA;gBAChD,CAAC;gBACD,0EAA0E;gBAC1E,IAAI,CAAC,gBAAgB,EAAE,CAAC;oBACtB,IAAI,IAAI,CAAC,IAAI,EAAE,KAAK,SAAS,EAAE,CAAC;wBAC9B,gBAAgB,GAAG,IAAI,CAAA;oBACzB,CAAC;oBACD,SAAQ;gBACV,CAAC;gBACD,MAAM,cAAc,GAAG,mBAAmB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;gBACrD,8DAA8D;gBAC9D,IAAI,cAAc,EAAE,CAAC;oBACnB,cAAc,GAAG,IAAI,CAAA;oBACrB,MAAM,CAAC,KAAK,EAAE,CACZ,wCAAwC,cAAc,CAAC,CAAC,CAAC,GAAG,CAC7D,CAAA;oBAED,mGAAmG;oBACnG,IAAI,cAAc,KAAK,EAAE,EAAE,CAAC;wBAC1B,IAAI,CAAC,SAAS,EAAE,CAAC;4BACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;wBAC7C,CAAC;wBACD,SAAS,IAAI,cAAc,CAAC,MAAM,CAAA;wBAClC,iGAAiG;wBACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;4BAC5B;gCACE,MAAM,EAAE,SAAS,CAAC,GAAG;gCACrB,CAAC,EAAE,UAAU;gCACb,QAAQ,EAAE,cAAc;gCACxB,IAAI;gCACJ,MAAM,EAAE,CAAC,CAAC;6BACX;yBACF,CAAC,CAAA;wBACF,cAAc,GAAG,EAAE,CAAA;oBACrB,CAAC;oBACD,MAAM,SAAS,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAA;oBACjD,iEAAiE;oBACjE,SAAS,GAAG,CAAC,CAAA;oBACb,UAAU,GAAG,CAAC,CAAA;oBAEd,MAAM,IAAI,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAA;oBACrC,MAAM,WAAW,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAA;oBAErE,iGAAiG;oBACjG,MAAM,CAAC,YAAY,CAAC,GAAG,MAAM,WAAW,CAAC,MAAM,CAAC;wBAC9C;4BACE,IAAI;4BACJ,WAAW;4BACX,QAAQ;4BACR,MAAM,EAAE,CAAC;4BACT,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;4BAC5D,IAAI;4BACJ,MAAM,EAAE,CAAC,CAAC;yBACX;qBACF,CAAC,CAAA;oBACF,MAAM,CAAC,KAAK,EAAE,CACZ,qBAAqB,IAAI,YAAY,WAAW,aAAa,YAAY,CAAC,GAAG,GAAG,CACjF,CAAA;oBACD,SAAS,GAAG,YAAY,CAAA;gBAC1B,CAAC;qBAAM,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;oBAC3B,IAAI,CAAC,SAAS,EAAE,CAAC;wBACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;oBAC7C,CAAC;oBACD,MAAM,EAAE,GAAG,EAAE,SAAS,EAAE,GAAG,SAAS,CAAA;oBACpC,cAAc,IAAI,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;oBAC5C,4DAA4D;oBAC5D,OAAO,cAAc,CAAC,MAAM,IAAI,SAAS,EAAE,CAAC;wBAC1C,MAAM,QAAQ,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAA;wBACnD,SAAS,IAAI,QAAQ,CAAC,MAAM,CAAA;wBAC5B,iGAAiG;wBACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;4BAC5B,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC,EAAE,UAAU,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE;yBAC3D,CAAC,CAAA;wBACF,UAAU,EAAE,CAAA;wBACZ,yBAAyB;wBACzB,cAAc,GAAG,cAAc,CAAC,KAAK,CAAC,SAAS,CAAC,CAAA;oBAClD,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QACD,IAAI,CAAC,cAAc,EAAE,CAAC;YACpB,MAAM,IAAI,KAAK,CAAC,sCAAsC,CAAC,CAAA;QACzD,CAAC;QAED,IAAI,cAAc,IAAI,oBAAoB,EAAE,CAAC;YAC3C,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;YAC7C,CAAC;YACD,yEAAyE;YACzE,IAAI,oBAAoB,EAAE,CAAC;gBACzB,cAAc,IAAI,cAAc,CAAA;YAClC,CAAC;YACD,SAAS,IAAI,cAAc,CAAC,MAAM,CAAA;YAClC,MAAM,CAAC,OAAO,EAAE,CACd,4CAA4C,SAAS,CAAC,GAAG,YAAY,UAAU,oCAAoC,SAAS,OAAO,cAAc,GAAG,CACrJ,CAAA;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,gCAAgC,UAAU,QAAQ,SAAS,CAAC,GAAG,GAAG,CACnE,CAAA;YACD,iGAAiG;YACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;gBAC5B;oBACE,MAAM,EAAE,SAAS,CAAC,GAAG;oBACrB,CAAC,EAAE,UAAU;oBACb,QAAQ,EAAE,cAAc;oBACxB,IAAI;oBACJ,MAAM,EAAE,CAAC,CAAC;iBACX;aACF,CAAC,CAAA;YACF,MAAM,SAAS,CAAC,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAA;QAClD,CAAC;IACH,CAAC;IAEO,WAAW,GAAG,IAAI,GAAG,EAA0B,CAAA;IAEvD,KAAK,CAAC,sBAAsB,CAAC,OAAwB;QACnD,MAAM,EAAE,YAAY,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAC7C,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACjC,MAAM,CAAC,KAAK,EAAE,CAAC,6CAA6C,QAAQ,EAAE,CAAC,CAAA;QAEvE,MAAM,OAAO,GAAqB,MAAM,WAAW;aAChD,IAAI,CAAC,EAAE,QAAQ,EAAE,CAAC;aAClB,IAAI,EAAE,CAAA;QAET,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,YAAY,CAAC,UAAU,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC,CAAA;QACvD,CAAC;IACH,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,WAAwB,EAAE,OAAwB;QACvE,MAAM,EAAE,YAAY,EAAE,WAAW,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QACnD,MAAM,EAAE,QAAQ,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;QAEtC,MAAM,CAAC,EAAE,MAAM,EAAE,OAAO,EAAE,CAAC,GAAG,WAAW,CAAA;QACzC,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,MAAM,IAAI,KAAK,CACb,qCAAqC,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,EAAE,CACnE,CAAA;QACH,CAAC;QACD,IAAI,SAAS,GAAG,WAAW,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;QACxC,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,SAAS;gBACP,CAAC,MAAM,WAAW,CAAC,OAAO,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;oBAC/D,SAAS,CAAA;YACX,IAAI,SAAS,EAAE,CAAC;gBACd,WAAW,CAAC,GAAG,CAAC,OAAO,EAAE,SAAS,CAAC,CAAA;YACrC,CAAC;QACH,CAAC;QACD,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CACb,qCAAqC,QAAQ,iBAAiB,OAAO,aAAa,CACnF,CAAA;QACH,CAAC;QACD,wCAAwC;QACxC,MAAM,UAAU,GAAa,EAAE,CAAA;QAE/B,MAAM,UAAU,GAAG,IAAA,8BAAuB,EACxC,WAAW,EACX,SAAS,CAAC,GAAG,EACb,UAAU,CACX,CAAA;QAED,iBAAiB;QACjB,iGAAiG;QACjG,MAAM,YAAY,CAAC,MAAM,CAAC;YACxB,EAAE,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE;SACxD,CAAC,CAAA;IACJ,CAAC;CACF;AAjND,gDAiNC"}

package/dist/Changes/ImportJBrowseConfigChange.js

@@ -25,7 +25,7 @@ function filterJBrowseConfig(config) {
         filteredConfig.plugins = plugins.filter((p) => p.name !== 'Apollo');
     }
     if (tracks) {
-        filteredConfig.trackss = tracks.filter((t) => t.type !== 'ApolloTrack');
+        filteredConfig.tracks = tracks.filter((t) => t.type !== 'ApolloTrack');
     }
     return filteredConfig;
 }

package/dist/Changes/ImportJBrowseConfigChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"ImportJBrowseConfigChange.js","sourceRoot":"","sources":["../../src/Changes/ImportJBrowseConfigChange.ts"],"names":[],"mappings":";;;AA2CA,kDAqCC;AAhFD,qDAAqD;AACrD,sDAMkC;AAoClC,SAAgB,mBAAmB,CAAC,MAAqB;IACvD,MAAM,EACJ,GAAG,EACH,GAAG,EACH,UAAU,EACV,aAAa,EACb,gBAAgB,EAChB,OAAO,EACP,MAAM,EACN,GAAG,IAAI,EACR,GAAG,MAAM,CAAA;IACV,sEAAsE;IACtE,MAAM,cAAc,GAAG,IAAqB,CAAA;IAC5C,IAAI,UAAU,EAAE,CAAC;QACf,cAAc,CAAC,UAAU,GAAG,UAAU,CAAC,MAAM,CAC3C,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,IAAI,KAAK,uBAAuB,CAC3D,CAAA;IACH,CAAC;IACD,IAAI,aAAa,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC;QACzC,MAAM,EAAE,OAAO,EAAE,GAAG,gBAAgB,EAAE,GAAG,aAAa,CAAC,YAAY,CAAA;QACnE,cAAc,CAAC,aAAa,GAAG;YAC7B,GAAG,aAAa;YAChB,YAAY,EAAE,gBAAgB;SAC/B,CAAA;IACH,CAAC;IACD,IAAI,gBAAgB,EAAE,CAAC;QACrB,cAAc,CAAC,gBAAgB,GAAG,gBAAgB,CAAC,MAAM,CACvD,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,uBAAuB,CAC1C,CAAA;IACH,CAAC;IACD,IAAI,OAAO,EAAE,CAAC;QACZ,cAAc,CAAC,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;IACrE,CAAC;IACD,IAAI,MAAM,EAAE,CAAC;QACX,cAAc,CAAC,OAAO,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,aAAa,CAAC,CAAA;IACzE,CAAC;IACD,OAAO,cAAc,CAAA;AACvB,CAAC;AAED,MAAa,yBAA0B,SAAQ,eAAM;IACnD,QAAQ,GAAG,2BAAoC,CAAA;IAC/C,gBAAgB,CAAgB;IAChC,gBAAgB,CAAgB;IAEhC,YACE,IAAyC,EACzC,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,gBAAgB,GAAG,IAAI,CAAC,gBAAgB,CAAA;QAC7C,IAAI,CAAC,gBAAgB,GAAG,IAAI,CAAC,gBAAgB,CAAA;IAC/C,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC7D,OAAO,EAAE,QAAQ,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,CAAA;IACzD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAA;QACtC,MAAM,EAAE,MAAM,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QACzC,MAAM,kBAAkB,CAAC,UAAU,EAAE,CAAA;QACrC,IAAI,CAAC,gBAAgB,EAAE,CAAC;YACtB,OAAM;QACR,CAAC;QACD,MAAM,cAAc,GAAG,mBAAmB,CAAC,gBAAgB,CAAC,CAAA;QAC5D,MAAM,kBAAkB,CAAC,MAAM,CAAC,cAAc,CAAC,CAAA;QAC/C,MAAM,CAAC,KAAK,EAAE,CAAC,2BAA2B,CAAC,CAAA;IAC7C,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,MAAM,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC3D,OAAO,IAAI,yBAAyB,CAClC;YACE,QAAQ,EAAE,2BAA2B;YACrC,gBAAgB,EAAE,gBAAgB;YAClC,gBAAgB,EAAE,gBAAgB;SACnC,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAjDD,8DAiDC"}
+{"version":3,"file":"ImportJBrowseConfigChange.js","sourceRoot":"","sources":["../../src/Changes/ImportJBrowseConfigChange.ts"],"names":[],"mappings":";;;AA2CA,kDAqCC;AAhFD,qDAAqD;AACrD,sDAMkC;AAoClC,SAAgB,mBAAmB,CAAC,MAAqB;IACvD,MAAM,EACJ,GAAG,EACH,GAAG,EACH,UAAU,EACV,aAAa,EACb,gBAAgB,EAChB,OAAO,EACP,MAAM,EACN,GAAG,IAAI,EACR,GAAG,MAAM,CAAA;IACV,sEAAsE;IACtE,MAAM,cAAc,GAAG,IAAqB,CAAA;IAC5C,IAAI,UAAU,EAAE,CAAC;QACf,cAAc,CAAC,UAAU,GAAG,UAAU,CAAC,MAAM,CAC3C,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,IAAI,KAAK,uBAAuB,CAC3D,CAAA;IACH,CAAC;IACD,IAAI,aAAa,EAAE,YAAY,EAAE,OAAO,EAAE,CAAC;QACzC,MAAM,EAAE,OAAO,EAAE,GAAG,gBAAgB,EAAE,GAAG,aAAa,CAAC,YAAY,CAAA;QACnE,cAAc,CAAC,aAAa,GAAG;YAC7B,GAAG,aAAa;YAChB,YAAY,EAAE,gBAAgB;SAC/B,CAAA;IACH,CAAC;IACD,IAAI,gBAAgB,EAAE,CAAC;QACrB,cAAc,CAAC,gBAAgB,GAAG,gBAAgB,CAAC,MAAM,CACvD,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,uBAAuB,CAC1C,CAAA;IACH,CAAC;IACD,IAAI,OAAO,EAAE,CAAC;QACZ,cAAc,CAAC,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;IACrE,CAAC;IACD,IAAI,MAAM,EAAE,CAAC;QACX,cAAc,CAAC,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,aAAa,CAAC,CAAA;IACxE,CAAC;IACD,OAAO,cAAc,CAAA;AACvB,CAAC;AAED,MAAa,yBAA0B,SAAQ,eAAM;IACnD,QAAQ,GAAG,2BAAoC,CAAA;IAC/C,gBAAgB,CAAgB;IAChC,gBAAgB,CAAgB;IAEhC,YACE,IAAyC,EACzC,OAAuB;QAEvB,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,gBAAgB,GAAG,IAAI,CAAC,gBAAgB,CAAA;QAC7C,IAAI,CAAC,gBAAgB,GAAG,IAAI,CAAC,gBAAgB,CAAA;IAC/C,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC7D,OAAO,EAAE,QAAQ,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,CAAA;IACzD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAA;QACtC,MAAM,EAAE,MAAM,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QACzC,MAAM,kBAAkB,CAAC,UAAU,EAAE,CAAA;QACrC,IAAI,CAAC,gBAAgB,EAAE,CAAC;YACtB,OAAM;QACR,CAAC;QACD,MAAM,cAAc,GAAG,mBAAmB,CAAC,gBAAgB,CAAC,CAAA;QAC5D,MAAM,kBAAkB,CAAC,MAAM,CAAC,cAAc,CAAC,CAAA;QAC/C,MAAM,CAAC,KAAK,EAAE,CAAC,2BAA2B,CAAC,CAAA;IAC7C,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,eAAe,CAAC,UAA2B,IAAG,CAAC;IAErD,UAAU;QACR,MAAM,EAAE,MAAM,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAA;QAC3D,OAAO,IAAI,yBAAyB,CAClC;YACE,QAAQ,EAAE,2BAA2B;YACrC,gBAAgB,EAAE,gBAAgB;YAClC,gBAAgB,EAAE,gBAAgB;SACnC,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAjDD,8DAiDC"}

package/dist/Changes/MergeExonsChange.d.ts

@@ -25,6 +25,5 @@ export declare class MergeExonsChange extends FeatureChange {
     executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
     executeOnClient(dataStore: ClientDataStore): Promise<void>;
     getInverse(): UndoMergeExonsChange;
-    mergeAttributes(firstExon: AnnotationFeatureSnapshot, secondExon: AnnotationFeatureSnapshot): Record<string, string[]>;
 }
 export {};

package/dist/Changes/MergeExonsChange.js

@@ -1,9 +1,11 @@
 "use strict";
+/* eslint-disable unicorn/prefer-structured-clone */
 /* eslint-disable @typescript-eslint/require-await */
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MergeExonsChange = void 0;
 const common_1 = require("@apollo-annotation/common");
+const util_1 = require("../util");
 const DeleteFeatureChange_1 = require("./DeleteFeatureChange");
 const UndoMergeExonsChange_1 = require("./UndoMergeExonsChange");
 class MergeExonsChange extends common_1.FeatureChange {
@@ -54,7 +56,13 @@ class MergeExonsChange extends common_1.FeatureChange {
             }
             mergedExon.min = Math.min(firstExon.min, secondExon.min);
             mergedExon.max = Math.max(firstExon.max, secondExon.max);
-            mergedExon.attributes = this.mergeAttributes(firstExon, secondExon);
+            const mergedAttributes = mergedExon.attributes
+                ? JSON.parse(JSON.stringify(mergedExon.attributes))
+                : {};
+            mergedAttributes.merged_with = [
+                (0, util_1.stringifyAttributes)((0, util_1.attributesToRecords)(secondExon.attributes)),
+            ];
+            mergedExon.attributes = mergedAttributes;
             const deletedIds = (0, DeleteFeatureChange_1.findAndDeleteChildFeature)(topLevelFeature, secondExon._id, this);
             deletedIds.push(secondExon._id);
             topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
@@ -77,11 +85,12 @@ class MergeExonsChange extends common_1.FeatureChange {
             }
             mergedExon.setMin(Math.min(firstExon.min, secondExon.min));
             mergedExon.setMax(Math.max(firstExon.max, secondExon.max));
-            const mergedAttrs = this.mergeAttributes(firstExon, secondExon);
-            mergedExon.setAttributes(new Map());
-            for (const key of Object.keys(mergedAttrs)) {
-                mergedExon.setAttribute(key, mergedAttrs[key]);
+            const mrg = mergedExon.attributes.get('merged_with')?.slice() ?? [];
+            const mergedWith = (0, util_1.stringifyAttributes)((0, util_1.attributesToRecords)(secondExon.attributes));
+            if (!mrg.includes(mergedWith)) {
+                mrg.push(mergedWith);
             }
+            mergedExon.setAttribute('merged_with', mrg);
             mergedExon.parent?.deleteChild(secondExon._id);
         }
     }
@@ -100,31 +109,6 @@ class MergeExonsChange extends common_1.FeatureChange {
             assembly,
         }, { logger });
     }
-    mergeAttributes(firstExon, secondExon) {
-        let mergedAttrs = {};
-        if (firstExon.attributes) {
-            // eslint-disable-next-line unicorn/prefer-structured-clone
-            mergedAttrs = JSON.parse(JSON.stringify(firstExon.attributes));
-        }
-        if (secondExon.attributes) {
-            // eslint-disable-next-line unicorn/prefer-structured-clone
-            const attrs = JSON.parse(JSON.stringify(secondExon.attributes));
-            for (const key of Object.keys(attrs)) {
-                if (key === '_id' || key === 'gff_id') {
-                    continue;
-                }
-                if (!Object.keys(mergedAttrs).includes(key)) {
-                    mergedAttrs[key] = [];
-                }
-                attrs[key].map((x) => {
-                    if (!mergedAttrs[key].includes(x)) {
-                        mergedAttrs[key].push(x);
-                    }
-                });
-            }
-        }
-        return mergedAttrs;
-    }
 }
 exports.MergeExonsChange = MergeExonsChange;
 //# sourceMappingURL=MergeExonsChange.js.map

package/dist/Changes/MergeExonsChange.js.map

@@ -1 +1 @@
-{"version":3,"file":"MergeExonsChange.js","sourceRoot":"","sources":["../../src/Changes/MergeExonsChange.ts"],"names":[],"mappings":";AAAA,qDAAqD;AACrD,4DAA4D;;;AAE5D,sDAOkC;AAGlC,+DAAiE;AACjE,iEAA6D;AAyB7D,MAAa,gBAAiB,SAAQ,sBAAa;IACjD,QAAQ,GAAG,kBAA2B,CAAA;IACtC,OAAO,CAA2B;IAElC,YAAY,IAAgC,EAAE,OAAuB;QACnE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IACD,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,2BAA2B,CAAA;IACpC,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,UAAU,EAAE,eAAe,EAAE,CAAC,GAAG,OAAO,CAAA;YAE5D,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,SAAS;gBACT,UAAU;gBACV,eAAe;aAChB,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,CAAC,GAAG,EAAE,CAAC;iBAClC,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YACT,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,CAAC,GAAG,GAAG,CAAA;gBACjG,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,UAAU,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,GAAG,CAAC,CAAA;YACxE,IAAI,CAAC,UAAU,EAAE,CAAC;gBAChB,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,UAAU,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAA;YACxD,UAAU,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAA;YACxD,UAAU,CAAC,UAAU,GAAG,IAAI,CAAC,eAAe,CAAC,SAAS,EAAE,UAAU,CAAC,CAAA;YACnE,MAAM,UAAU,GAAG,IAAA,+CAAyB,EAC1C,eAAe,EACf,UAAU,CAAC,GAAG,EACd,IAAI,CACL,CAAA;YACD,UAAU,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,CAAA;YAC/B,eAAe,CAAC,MAAM,GAAG,eAAe,CAAC,MAAM,CAAC,MAAM,CACpD,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC,CACjC,CAAA;YACD,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;QAC9B,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,uEAAuE;QACvE,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QAED,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,UAAU,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;YACtD,IAAI,CAAC,UAAU,EAAE,CAAC;gBAChB,MAAM,IAAI,KAAK,CACb,2CAA2C,SAAS,CAAC,GAAG,GAAG,CAC5D,CAAA;YACH,CAAC;YACD,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1D,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1D,MAAM,WAAW,GAAG,IAAI,CAAC,eAAe,CAAC,SAAS,EAAE,UAAU,CAAC,CAAA;YAC/D,UAAU,CAAC,aAAa,CAAC,IAAI,GAAG,EAAE,CAAC,CAAA;YACnC,KAAK,MAAM,GAAG,IAAI,MAAM,CAAC,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC;gBAC3C,UAAU,CAAC,YAAY,CAAC,GAAG,EAAE,WAAW,CAAC,GAAG,CAAC,CAAC,CAAA;YAChD,CAAC;YACD,UAAU,CAAC,MAAM,EAAE,WAAW,CAAC,UAAU,CAAC,GAAG,CAAC,CAAA;QAChD,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,eAAe,EAAE,EAAE,CAAC,CAAC;YACtE,cAAc,EAAE,CAAC,eAAe,CAAC,SAAS,EAAE,eAAe,CAAC,UAAU,CAAC;YACvE,eAAe,EAAE,eAAe,CAAC,eAAe;SACjD,CAAC,CAAC,CAAA;QACH,MAAM,CAAC,KAAK,EAAE,CAAC,mBAAmB,IAAI,CAAC,SAAS,CAAC,cAAc,CAAC,GAAG,CAAC,CAAA;QACpE,OAAO,IAAI,2CAAoB,CAC7B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,sBAAsB;YAChC,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;IAED,eAAe,CACb,SAAoC,EACpC,UAAqC;QAErC,IAAI,WAAW,GAA6B,EAAE,CAAA;QAC9C,IAAI,SAAS,CAAC,UAAU,EAAE,CAAC;YACzB,2DAA2D;YAC3D,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CAAA;QAChE,CAAC;QAED,IAAI,UAAU,CAAC,UAAU,EAAE,CAAC;YAC1B,2DAA2D;YAC3D,MAAM,KAAK,GAA6B,IAAI,CAAC,KAAK,CAChD,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,UAAU,CAAC,CACtC,CAAA;YACD,KAAK,MAAM,GAAG,IAAI,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;gBACrC,IAAI,GAAG,KAAK,KAAK,IAAI,GAAG,KAAK,QAAQ,EAAE,CAAC;oBACtC,SAAQ;gBACV,CAAC;gBACD,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;oBAC5C,WAAW,CAAC,GAAG,CAAC,GAAG,EAAE,CAAA;gBACvB,CAAC;gBACD,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;oBACnB,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC;wBAClC,WAAW,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;oBAC1B,CAAC;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC;QACH,CAAC;QACD,OAAO,WAAW,CAAA;IACpB,CAAC;CACF;AAjJD,4CAiJC"}
+{"version":3,"file":"MergeExonsChange.js","sourceRoot":"","sources":["../../src/Changes/MergeExonsChange.ts"],"names":[],"mappings":";AAAA,oDAAoD;AACpD,qDAAqD;AACrD,4DAA4D;;;AAE5D,sDAOkC;AAGlC,kCAAkE;AAElE,+DAAiE;AACjE,iEAA6D;AAyB7D,MAAa,gBAAiB,SAAQ,sBAAa;IACjD,QAAQ,GAAG,kBAA2B,CAAA;IACtC,OAAO,CAA2B;IAElC,YAAY,IAAgC,EAAE,OAAuB;QACnE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IACD,2EAA2E;IAC3E,IAAI,YAAY;QACd,OAAO,2BAA2B,CAAA;IACpC,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,UAAU,EAAE,eAAe,EAAE,CAAC,GAAG,OAAO,CAAA;YAE5D,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,SAAS;gBACT,UAAU;gBACV,eAAe;aAChB,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,CAAC,GAAG,EAAE,CAAC;iBAClC,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YACT,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,CAAC,GAAG,GAAG,CAAA;gBACjG,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,UAAU,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,GAAG,CAAC,CAAA;YACxE,IAAI,CAAC,UAAU,EAAE,CAAC;gBAChB,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,UAAU,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAA;YACxD,UAAU,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAA;YAExD,MAAM,gBAAgB,GAA6B,UAAU,CAAC,UAAU;gBACtE,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;gBACnD,CAAC,CAAC,EAAE,CAAA;YACN,gBAAgB,CAAC,WAAW,GAAG;gBAC7B,IAAA,0BAAmB,EAAC,IAAA,0BAAmB,EAAC,UAAU,CAAC,UAAU,CAAC,CAAC;aAChE,CAAA;YACD,UAAU,CAAC,UAAU,GAAG,gBAAgB,CAAA;YAExC,MAAM,UAAU,GAAG,IAAA,+CAAyB,EAC1C,eAAe,EACf,UAAU,CAAC,GAAG,EACd,IAAI,CACL,CAAA;YACD,UAAU,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,CAAA;YAC/B,eAAe,CAAC,MAAM,GAAG,eAAe,CAAC,MAAM,CAAC,MAAM,CACpD,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC,CACjC,CAAA;YACD,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;QAC9B,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,uEAAuE;QACvE,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QAED,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,MAAM,EAAE,SAAS,EAAE,UAAU,EAAE,GAAG,MAAM,CAAA;YACxC,MAAM,UAAU,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;YACtD,IAAI,CAAC,UAAU,EAAE,CAAC;gBAChB,MAAM,IAAI,KAAK,CACb,2CAA2C,SAAS,CAAC,GAAG,GAAG,CAC5D,CAAA;YACH,CAAC;YACD,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1D,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,GAAG,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,CAAA;YAE1D,MAAM,GAAG,GAAG,UAAU,CAAC,UAAU,CAAC,GAAG,CAAC,aAAa,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAA;YACnE,MAAM,UAAU,GAAG,IAAA,0BAAmB,EACpC,IAAA,0BAAmB,EAAC,UAAU,CAAC,UAAU,CAAC,CAC3C,CAAA;YACD,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,EAAE,CAAC;gBAC9B,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;YACtB,CAAC;YACD,UAAU,CAAC,YAAY,CAAC,aAAa,EAAE,GAAG,CAAC,CAAA;YAE3C,UAAU,CAAC,MAAM,EAAE,WAAW,CAAC,UAAU,CAAC,GAAG,CAAC,CAAA;QAChD,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,eAAe,EAAE,EAAE,CAAC,CAAC;YACtE,cAAc,EAAE,CAAC,eAAe,CAAC,SAAS,EAAE,eAAe,CAAC,UAAU,CAAC;YACvE,eAAe,EAAE,eAAe,CAAC,eAAe;SACjD,CAAC,CAAC,CAAA;QACH,MAAM,CAAC,KAAK,EAAE,CAAC,mBAAmB,IAAI,CAAC,SAAS,CAAC,cAAc,CAAC,GAAG,CAAC,CAAA;QACpE,OAAO,IAAI,2CAAoB,CAC7B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,sBAAsB;YAChC,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CAiCF;AA9JD,4CA8JC"}

package/dist/Changes/MergeTranscriptsChange.d.ts

@@ -20,6 +20,7 @@ export declare class MergeTranscriptsChange extends FeatureChange {
     typeName: "MergeTranscriptsChange";
     changes: MergeTranscriptsChangeDetails[];
     constructor(json: SerializedMergeTranscriptsChange, options?: ChangeOptions);
+    get notification(): string;
     toJSON(): SerializedMergeTranscriptsChange;
     executeOnServer(backend: ServerDataStore): Promise<void>;
     mergeTranscriptsOnServer(firstTranscript: Feature, secondTranscript: AnnotationFeatureSnapshot): void;
@@ -27,10 +28,7 @@ export declare class MergeTranscriptsChange extends FeatureChange {
     executeOnClient(dataStore: ClientDataStore): Promise<void>;
     mergeTranscriptsOnClient(firstTranscript: AnnotationFeature, secondTranscript: AnnotationFeatureSnapshot): void;
     mergeFeatureIntoTranscriptOnClient(secondFeatureChild: AnnotationFeatureSnapshot, firstTranscript: AnnotationFeature): void;
-    isAnnotationFeature(obj: any): obj is AnnotationFeature;
     executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
-    mergeAttributes(destination: Feature | AnnotationFeature, source: AnnotationFeatureSnapshot): Record<string, string[]>;
-    mergeTranscriptAttributes(firstTranscript: Feature | AnnotationFeature, secondTranscript: AnnotationFeatureSnapshot): void;
     getInverse(): UndoMergeTranscriptsChange;
 }
 export {};