@apollo-annotation/shared 0.3.6 → 0.3.8

package/dist/Changes/MergeTranscriptsChange.js

@@ -0,0 +1,245 @@
+"use strict";
+/* eslint-disable unicorn/prefer-structured-clone */
+/* eslint-disable @typescript-eslint/require-await */
+/* eslint-disable @typescript-eslint/no-unsafe-assignment */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.MergeTranscriptsChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const util_1 = require("@jbrowse/core/util");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const util_2 = require("../util");
+const DeleteFeatureChange_1 = require("./DeleteFeatureChange");
+const UndoMergeTranscriptsChange_1 = require("./UndoMergeTranscriptsChange");
+class MergeTranscriptsChange extends common_1.FeatureChange {
+    typeName = 'MergeTranscriptsChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    // eslint-disable-next-line @typescript-eslint/class-literal-property-style
+    get notification() {
+        return 'Transcripts successfully merged';
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ firstTranscript, secondTranscript, parentFeatureId }] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                firstTranscript,
+                secondTranscript,
+                parentFeatureId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes, logger } = this;
+        for (const change of changes) {
+            const { firstTranscript, secondTranscript } = change;
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: firstTranscript._id })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                const errMsg = `*** ERROR: The following featureId was not found in database ='${firstTranscript._id}'`;
+                logger.error(errMsg);
+                throw new Error(errMsg);
+            }
+            const mergedTranscript = this.getFeatureFromId(topLevelFeature, firstTranscript._id);
+            if (!mergedTranscript) {
+                const errMsg = 'ERROR when searching feature by featureId';
+                logger.error(errMsg);
+                throw new Error(errMsg);
+            }
+            this.mergeTranscriptsOnServer(mergedTranscript, secondTranscript);
+            const deletedIds = (0, DeleteFeatureChange_1.findAndDeleteChildFeature)(topLevelFeature, secondTranscript._id, this);
+            deletedIds.push(secondTranscript._id);
+            topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
+            await topLevelFeature.save();
+        }
+    }
+    mergeTranscriptsOnServer(firstTranscript, secondTranscript) {
+        firstTranscript.min = Math.min(firstTranscript.min, secondTranscript.min);
+        firstTranscript.max = Math.max(firstTranscript.max, secondTranscript.max);
+        const mergedAttributes = firstTranscript.attributes
+            ? JSON.parse(JSON.stringify(firstTranscript.attributes))
+            : {};
+        if (secondTranscript.attributes) {
+            if (!Object.keys(mergedAttributes).includes('merged_with')) {
+                mergedAttributes.merged_with = [];
+            }
+            mergedAttributes.merged_with.push((0, util_2.stringifyAttributes)((0, util_2.attributesToRecords)(secondTranscript.attributes)));
+        }
+        firstTranscript.attributes = mergedAttributes;
+        if (secondTranscript.children) {
+            for (const [, secondFeatureChild] of Object.entries(secondTranscript.children)) {
+                this.mergeFeatureIntoTranscriptOnServer(secondFeatureChild, firstTranscript);
+            }
+        }
+    }
+    mergeFeatureIntoTranscriptOnServer(secondFeatureChild, firstTranscript) {
+        if (!firstTranscript.children) {
+            firstTranscript.children = new Map();
+        }
+        let merged = false;
+        let mrgChild;
+        let toDelete;
+        for (const [, firstFeatureChild] of firstTranscript.children) {
+            if (!merged || !mrgChild) {
+                toDelete = false;
+                mrgChild = firstFeatureChild;
+            }
+            else {
+                toDelete = true;
+            }
+            if (mrgChild.type === secondFeatureChild.type &&
+                mrgChild.type === firstFeatureChild.type &&
+                (0, util_1.doesIntersect2)(secondFeatureChild.min, secondFeatureChild.max, mrgChild.min, mrgChild.max) &&
+                (0, util_1.doesIntersect2)(firstFeatureChild.min, firstFeatureChild.max, mrgChild.min, mrgChild.max)) {
+                mrgChild.min = Math.min(secondFeatureChild.min, mrgChild.min, firstFeatureChild.min);
+                mrgChild.max = Math.max(secondFeatureChild.max, mrgChild.max, firstFeatureChild.max);
+                if (!mrgChild.attributes) {
+                    mrgChild.attributes = {};
+                }
+                const mrgChildAttr = JSON.parse(JSON.stringify(mrgChild.attributes));
+                if (!Object.keys(mrgChildAttr).includes('merged_with')) {
+                    mrgChildAttr.merged_with = [];
+                }
+                const mergedWithAttributes = mrgChildAttr.merged_with;
+                mergedWithAttributes.push((0, util_2.stringifyAttributes)((0, util_2.attributesToRecords)(secondFeatureChild.attributes)));
+                if (toDelete) {
+                    const recs = firstFeatureChild.attributes
+                        ? JSON.parse(JSON.stringify(firstFeatureChild.attributes))
+                        : undefined;
+                    mergedWithAttributes.push((0, util_2.stringifyAttributes)(recs));
+                    firstTranscript.children.delete(firstFeatureChild._id.toString());
+                }
+                mrgChildAttr.merged_with = [...new Set(mergedWithAttributes)];
+                mrgChild.attributes = mrgChildAttr;
+                merged = true;
+            }
+        }
+        if (merged && mrgChild && secondFeatureChild.children) {
+            // Add the children of the source feature
+            // (secondFeatureChild.children) to the merged feature (mrgChild)
+            Object.entries(secondFeatureChild.children).map(([, child]) => {
+                this.addChild(mrgChild, child);
+            });
+        }
+        if (merged && mrgChild) {
+            this.addChild(firstTranscript, mrgChild);
+        }
+        else {
+            // This secondFeatureChild has no overlap with any feature in the
+            // receiving transcript so we add it as it is to the receiving transcript
+            this.addChild(firstTranscript, secondFeatureChild);
+        }
+    }
+    /* --------------------------------- */
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        for (const [idx, changedId] of this.changedIds.entries()) {
+            const { firstTranscript, secondTranscript } = this.changes[idx];
+            const mergedTranscript = dataStore.getFeature(firstTranscript._id);
+            if (!mergedTranscript) {
+                throw new Error(`Could not find feature with identifier "${changedId}"`);
+            }
+            this.mergeTranscriptsOnClient(mergedTranscript, secondTranscript);
+            mergedTranscript.parent?.deleteChild(secondTranscript._id);
+        }
+    }
+    mergeTranscriptsOnClient(firstTranscript, secondTranscript) {
+        firstTranscript.setMin(Math.min(firstTranscript.min, secondTranscript.min));
+        firstTranscript.setMax(Math.max(firstTranscript.max, secondTranscript.max));
+        const mrg = firstTranscript.attributes.get('merged_with')?.slice() ?? [];
+        const mergedWith = (0, util_2.stringifyAttributes)((0, util_2.attributesToRecords)(secondTranscript.attributes));
+        if (!mrg.includes(mergedWith)) {
+            // executeOnClient runs twice (?!) so avoid adding this key again
+            mrg.push(mergedWith);
+        }
+        firstTranscript.setAttribute('merged_with', mrg);
+        if (secondTranscript.children) {
+            for (const [, secondFeatureChild] of Object.entries(secondTranscript.children)) {
+                this.mergeFeatureIntoTranscriptOnClient(secondFeatureChild, firstTranscript);
+            }
+        }
+    }
+    mergeFeatureIntoTranscriptOnClient(secondFeatureChild, firstTranscript) {
+        if (!firstTranscript.children) {
+            firstTranscript.children = new Map();
+        }
+        let merged = false;
+        let mrgChild;
+        let toDelete;
+        for (const [, firstFeatureChild] of firstTranscript.children) {
+            if (!merged || !mrgChild) {
+                toDelete = false;
+                mrgChild = firstFeatureChild;
+            }
+            else {
+                toDelete = true;
+            }
+            if (mrgChild.type === secondFeatureChild.type &&
+                mrgChild.type === firstFeatureChild.type &&
+                (0, util_1.doesIntersect2)(secondFeatureChild.min, secondFeatureChild.max, mrgChild.min, mrgChild.max) &&
+                (0, util_1.doesIntersect2)(firstFeatureChild.min, firstFeatureChild.max, mrgChild.min, mrgChild.max)) {
+                mrgChild.setMin(Math.min(secondFeatureChild.min, mrgChild.min, firstFeatureChild.min));
+                mrgChild.setMax(Math.max(secondFeatureChild.max, mrgChild.max, firstFeatureChild.max));
+                const mergedWithAttributes = mrgChild.attributes.get('merged_with')?.slice() ?? [];
+                mergedWithAttributes.push((0, util_2.stringifyAttributes)((0, util_2.attributesToRecords)(secondFeatureChild.attributes)));
+                if (toDelete) {
+                    mergedWithAttributes.push((0, util_2.stringifyAttributes)((0, mobx_state_tree_1.getSnapshot)(firstFeatureChild).attributes));
+                    firstTranscript.deleteChild(firstFeatureChild._id);
+                }
+                mrgChild.setAttribute('merged_with', [...new Set(mergedWithAttributes)]);
+                merged = true;
+            }
+        }
+        if (merged && mrgChild && secondFeatureChild.children) {
+            Object.entries(secondFeatureChild.children).map(([, child]) => {
+                mrgChild.addChild(child);
+            });
+        }
+        if (merged && mrgChild) {
+            firstTranscript.addChild((0, mobx_state_tree_1.getSnapshot)(mrgChild));
+        }
+        else {
+            // This secondFeatureChild has no overlap with any feature in the
+            // receiving transcript so we add it as it is to the receiving transcript
+            firstTranscript.addChild(secondFeatureChild);
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes]
+            .reverse()
+            .map((mergeTranscriptChange) => ({
+            transcriptsToRestore: [
+                mergeTranscriptChange.firstTranscript,
+                mergeTranscriptChange.secondTranscript,
+            ],
+            parentFeatureId: mergeTranscriptChange.parentFeatureId,
+        }));
+        logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
+        return new UndoMergeTranscriptsChange_1.UndoMergeTranscriptsChange({
+            changedIds: inverseChangedIds,
+            typeName: 'UndoMergeTranscriptsChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+}
+exports.MergeTranscriptsChange = MergeTranscriptsChange;
+//# sourceMappingURL=MergeTranscriptsChange.js.map

package/dist/Changes/MergeTranscriptsChange.js.map

@@ -0,0 +1 @@
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package/dist/Changes/SplitExonChange.d.ts

@@ -0,0 +1,33 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { UndoSplitExonChange } from './UndoSplitExonChange';
+interface SerializedSplitExonChangeBase extends SerializedFeatureChange {
+    typeName: 'SplitExonChange';
+}
+export interface SplitExonChangeDetails {
+    exonToBeSplit: AnnotationFeatureSnapshot;
+    parentFeatureId: string;
+    upstreamCut: number;
+    downstreamCut: number;
+    leftExonId: string;
+    rightExonId: string;
+}
+interface SerializedSplitExonChangeSingle extends SerializedSplitExonChangeBase, SplitExonChangeDetails {
+}
+interface SerializedSplitExonChangeMultiple extends SerializedSplitExonChangeBase {
+    changes: SplitExonChangeDetails[];
+}
+export type SerializedSplitExonChange = SerializedSplitExonChangeSingle | SerializedSplitExonChangeMultiple;
+export declare class SplitExonChange extends FeatureChange {
+    typeName: "SplitExonChange";
+    changes: SplitExonChangeDetails[];
+    constructor(json: SerializedSplitExonChange, options?: ChangeOptions);
+    get notification(): string;
+    toJSON(): SerializedSplitExonChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): UndoSplitExonChange;
+    makeSplitExons(exonToBeSplit: AnnotationFeatureSnapshot, upstreamCut: number, downstreamCut: number, leftExonId: string, rightExonId: string): AnnotationFeatureSnapshot[];
+}
+export {};

package/dist/Changes/SplitExonChange.js

@@ -0,0 +1,142 @@
+"use strict";
+/* eslint-disable @typescript-eslint/require-await */
+/* eslint-disable @typescript-eslint/no-unsafe-assignment */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.SplitExonChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const DeleteFeatureChange_1 = require("./DeleteFeatureChange");
+const UndoSplitExonChange_1 = require("./UndoSplitExonChange");
+class SplitExonChange extends common_1.FeatureChange {
+    typeName = 'SplitExonChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    // eslint-disable-next-line @typescript-eslint/class-literal-property-style
+    get notification() {
+        return 'Exon successfully split';
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ exonToBeSplit, parentFeatureId, upstreamCut, downstreamCut, leftExonId, rightExonId, },] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                exonToBeSplit,
+                parentFeatureId,
+                upstreamCut,
+                downstreamCut,
+                leftExonId,
+                rightExonId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes, logger } = this;
+        for (const change of changes) {
+            const { exonToBeSplit, parentFeatureId, upstreamCut, downstreamCut, leftExonId, rightExonId, } = change;
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: exonToBeSplit._id })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                const errMsg = `*** ERROR: The following featureId was not found in database ='${exonToBeSplit._id}'`;
+                logger.error(errMsg);
+                throw new Error(errMsg);
+            }
+            const tx = this.getFeatureFromId(topLevelFeature, parentFeatureId);
+            if (!tx?.children) {
+                throw new Error('ERROR: There should be at least one child (i.e. the exon to be split)');
+            }
+            const [leftExon, rightExon] = this.makeSplitExons(exonToBeSplit, upstreamCut, downstreamCut, leftExonId, rightExonId);
+            tx.children.set(leftExon._id, {
+                allIds: [],
+                ...leftExon,
+                // eslint-disable-next-line @typescript-eslint/ban-ts-comment
+                // @ts-expect-error
+                _id: leftExon._id,
+            });
+            tx.children.set(rightExon._id, {
+                allIds: [],
+                ...rightExon,
+                // eslint-disable-next-line @typescript-eslint/ban-ts-comment
+                // @ts-expect-error
+                _id: rightExon._id,
+            });
+            // Child features should be sorted for click and drag of gene glyphs to work properly
+            tx.children = new Map([...tx.children.entries()].sort((a, b) => a[1].min - b[1].min));
+            const deletedIds = (0, DeleteFeatureChange_1.findAndDeleteChildFeature)(topLevelFeature, exonToBeSplit._id, this);
+            deletedIds.push(exonToBeSplit._id);
+            topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
+            topLevelFeature.allIds.push(leftExon._id, rightExon._id);
+            await topLevelFeature.save();
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        for (const [idx] of this.changedIds.entries()) {
+            const { exonToBeSplit, parentFeatureId, upstreamCut, downstreamCut, leftExonId, rightExonId, } = this.changes[idx];
+            if (!parentFeatureId) {
+                throw new Error('TODO: Split exon without parent');
+            }
+            const [leftExon, rightExon] = this.makeSplitExons(exonToBeSplit, upstreamCut, downstreamCut, leftExonId, rightExonId);
+            const parentFeature = dataStore.getFeature(parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+            }
+            parentFeature.addChild(leftExon);
+            parentFeature.addChild(rightExon);
+            if (dataStore.getFeature(exonToBeSplit._id)) {
+                dataStore.deleteFeature(exonToBeSplit._id);
+            }
+        }
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes].reverse().map((splitExonChange) => ({
+            exonToRestore: splitExonChange.exonToBeSplit,
+            parentFeatureId: splitExonChange.parentFeatureId,
+            idsToDelete: [splitExonChange.leftExonId, splitExonChange.rightExonId],
+            upstreamCut: splitExonChange.upstreamCut,
+            downstreamCut: splitExonChange.downstreamCut,
+            leftExonId: splitExonChange.leftExonId,
+            rightExonId: splitExonChange.rightExonId,
+        }));
+        logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
+        return new UndoSplitExonChange_1.UndoSplitExonChange({
+            changedIds: inverseChangedIds,
+            typeName: 'UndoSplitExonChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+    makeSplitExons(exonToBeSplit, upstreamCut, downstreamCut, leftExonId, rightExonId) {
+        // eslint-disable-next-line unicorn/prefer-structured-clone
+        const exon = JSON.parse(JSON.stringify(exonToBeSplit));
+        // eslint-disable-next-line @typescript-eslint/no-unsafe-member-access
+        delete exon.attributes._id;
+        // eslint-disable-next-line @typescript-eslint/no-unsafe-member-access
+        delete exon.attributes.gff_id;
+        const leftExon = structuredClone(exon);
+        leftExon._id = leftExonId;
+        leftExon.max = upstreamCut;
+        const rightExon = structuredClone(exon);
+        rightExon.min = downstreamCut;
+        rightExon._id = rightExonId;
+        return [leftExon, rightExon];
+    }
+}
+exports.SplitExonChange = SplitExonChange;
+//# sourceMappingURL=SplitExonChange.js.map

package/dist/Changes/SplitExonChange.js.map

@@ -0,0 +1 @@
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package/dist/Changes/UndoMergeExonsChange.d.ts

@@ -0,0 +1,27 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { MergeExonsChange } from './MergeExonsChange';
+interface SerializedUndoMergeExonsChangeBase extends SerializedFeatureChange {
+    typeName: 'UndoMergeExonsChange';
+}
+export interface UndoMergeExonsChangeDetails {
+    exonsToRestore: AnnotationFeatureSnapshot[];
+    parentFeatureId: string;
+}
+interface SerializedUndoMergeExonsChangeSingle extends SerializedUndoMergeExonsChangeBase, UndoMergeExonsChangeDetails {
+}
+interface SerializedUndoMergeExonsChangeMultiple extends SerializedUndoMergeExonsChangeBase {
+    changes: UndoMergeExonsChangeDetails[];
+}
+export type SerializedUndoMergeExonsChange = SerializedUndoMergeExonsChangeSingle | SerializedUndoMergeExonsChangeMultiple;
+export declare class UndoMergeExonsChange extends FeatureChange {
+    typeName: "UndoMergeExonsChange";
+    changes: UndoMergeExonsChangeDetails[];
+    constructor(json: SerializedUndoMergeExonsChange, options?: ChangeOptions);
+    toJSON(): SerializedUndoMergeExonsChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): MergeExonsChange;
+}
+export {};

package/dist/Changes/UndoMergeExonsChange.js

@@ -0,0 +1,104 @@
+"use strict";
+/* eslint-disable @typescript-eslint/require-await */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UndoMergeExonsChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const MergeExonsChange_1 = require("./MergeExonsChange");
+class UndoMergeExonsChange extends common_1.FeatureChange {
+    typeName = 'UndoMergeExonsChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ exonsToRestore, parentFeatureId }] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                exonsToRestore,
+                parentFeatureId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes } = this;
+        for (const change of changes) {
+            const { exonsToRestore, parentFeatureId } = change;
+            if (exonsToRestore.length !== 2) {
+                throw new Error(`Expected exactly two exons to restore. Got :${exonsToRestore.length}`);
+            }
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: parentFeatureId })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}"`);
+            }
+            const parentFeature = this.getFeatureFromId(topLevelFeature, parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find feature with ID "${parentFeatureId}" in feature "${topLevelFeature._id.toString()}"`);
+            }
+            if (!parentFeature.children) {
+                parentFeature.children = new Map();
+            }
+            for (const exon of exonsToRestore) {
+                this.addChild(parentFeature, exon);
+                const childIds = this.getChildFeatureIds(exon);
+                topLevelFeature.allIds.push(exon._id, ...childIds);
+            }
+            await topLevelFeature.save();
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        const { changes } = this;
+        for (const change of changes) {
+            const { exonsToRestore, parentFeatureId } = change;
+            if (!parentFeatureId) {
+                throw new Error('Parent ID is missing');
+            }
+            const parentFeature = dataStore.getFeature(parentFeatureId);
+            if (!parentFeature) {
+                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
+            }
+            // create an ID for the parent feature if it does not have one
+            if (!parentFeature.attributes.get('_id')) {
+                parentFeature.setAttribute('_id', [parentFeature._id]);
+            }
+            for (const exon of exonsToRestore) {
+                parentFeature.addChild(exon);
+            }
+        }
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes]
+            .reverse()
+            .map((undoMergeExonsChange) => ({
+            firstExon: undoMergeExonsChange.exonsToRestore[0],
+            secondExon: undoMergeExonsChange.exonsToRestore[1],
+            parentFeatureId: undoMergeExonsChange.parentFeatureId,
+        }));
+        return new MergeExonsChange_1.MergeExonsChange({
+            changedIds: inverseChangedIds,
+            typeName: 'MergeExonsChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+}
+exports.UndoMergeExonsChange = UndoMergeExonsChange;
+//# sourceMappingURL=UndoMergeExonsChange.js.map

package/dist/Changes/UndoMergeExonsChange.js.map

@@ -0,0 +1 @@
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package/dist/Changes/UndoMergeTranscriptsChange.d.ts

@@ -0,0 +1,27 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { MergeTranscriptsChange } from './MergeTranscriptsChange';
+interface SerializedUndoMergeTranscriptsChangeBase extends SerializedFeatureChange {
+    typeName: 'UndoMergeTranscriptsChange';
+}
+export interface UndoMergeTranscriptsChangeDetails {
+    transcriptsToRestore: AnnotationFeatureSnapshot[];
+    parentFeatureId: string;
+}
+interface SerializedUndoMergeTranscriptsChangeSingle extends SerializedUndoMergeTranscriptsChangeBase, UndoMergeTranscriptsChangeDetails {
+}
+interface SerializedUndoMergeTranscriptsChangeMultiple extends SerializedUndoMergeTranscriptsChangeBase {
+    changes: UndoMergeTranscriptsChangeDetails[];
+}
+export type SerializedUndoMergeTranscriptsChange = SerializedUndoMergeTranscriptsChangeSingle | SerializedUndoMergeTranscriptsChangeMultiple;
+export declare class UndoMergeTranscriptsChange extends FeatureChange {
+    typeName: "UndoMergeTranscriptsChange";
+    changes: UndoMergeTranscriptsChangeDetails[];
+    constructor(json: SerializedUndoMergeTranscriptsChange, options?: ChangeOptions);
+    toJSON(): SerializedUndoMergeTranscriptsChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): MergeTranscriptsChange;
+}
+export {};