@apollo-annotation/shared 0.3.6 → 0.3.8

package/dist/Changes/LocationEndChange.js

@@ -29,15 +29,31 @@ class LocationEndChange extends common_1.FeatureChange {
     async executeOnServer(backend) {
         const { featureModel, session } = backend;
         const { changes, logger } = this;
-        const featuresForChanges = [];
         // Let's first check that all features are found and those old values match with expected ones. We do this just to be sure that all changes can be done.
+        const topLevelFeatures = [];
         for (const change of changes) {
-            const { featureId, oldEnd } = change;
-            // Search correct feature
-            const topLevelFeature = await featureModel
-                .findOne({ allIds: featureId })
-                .session(session)
-                .exec();
+            const { featureId, oldEnd, newEnd } = change;
+            // See if we already have top-level feature for this feature
+            let topLevelFeature;
+            let feature;
+            for (const tlv of topLevelFeatures) {
+                const childFeature = this.getFeatureFromId(tlv, featureId);
+                if (childFeature) {
+                    topLevelFeature = tlv;
+                    feature = childFeature;
+                    break;
+                }
+            }
+            if (!topLevelFeature) {
+                // Don't already have top-level feature, so let's query it
+                topLevelFeature = await featureModel
+                    .findOne({ allIds: featureId })
+                    .session(session)
+                    .exec();
+                if (topLevelFeature) {
+                    topLevelFeatures.push(topLevelFeature);
+                }
+            }
             if (!topLevelFeature) {
                 const errMsg = `*** ERROR: The following featureId was not found in database ='${featureId}'`;
                 logger.error(errMsg);
@@ -45,35 +61,20 @@ class LocationEndChange extends common_1.FeatureChange {
                 // throw new NotFoundException(errMsg)  -- This is causing runtime error because Exception comes from @nestjs/common!!!
             }
             logger.debug?.(`*** TOP level feature found: ${JSON.stringify(topLevelFeature)}`);
-            const foundFeature = this.getFeatureFromId(topLevelFeature, featureId);
-            if (!foundFeature) {
+            if (!feature) {
+                feature = this.getFeatureFromId(topLevelFeature, featureId);
+            }
+            if (!feature) {
                 const errMsg = 'ERROR when searching feature by featureId';
                 logger.error(errMsg);
                 throw new Error(errMsg);
             }
-            logger.debug?.(`*** Found feature: ${JSON.stringify(foundFeature)}`);
-            if (foundFeature.max === oldEnd) {
-                featuresForChanges.push({ feature: foundFeature, topLevelFeature });
-            }
-            else {
-                if (foundFeature.children) {
-                    for (const [, childFeature] of foundFeature.children) {
-                        if (childFeature.max === oldEnd) {
-                            logger.debug?.(`*************** UPDATE CHILD FEATURE ID= ${featureId}, CHILD: ${JSON.stringify(childFeature)}`);
-                            featuresForChanges.push({
-                                feature: childFeature,
-                                topLevelFeature,
-                            });
-                            break;
-                        }
-                    }
-                }
+            logger.debug?.(`*** Found feature: ${JSON.stringify(feature)}`);
+            if (feature.max !== oldEnd) {
+                const errMsg = 'Expected previous max does not match';
+                logger.error(errMsg);
+                throw new Error(errMsg);
             }
-        }
-        // Let's update objects.
-        for (const [idx, change] of changes.entries()) {
-            const { newEnd } = change;
-            const { feature, topLevelFeature } = featuresForChanges[idx];
             feature.max = newEnd;
             if (topLevelFeature._id.equals(feature._id)) {
                 topLevelFeature.markModified('end'); // Mark as modified. Without this save() -method is not updating data in database
@@ -81,14 +82,15 @@ class LocationEndChange extends common_1.FeatureChange {
             else {
                 topLevelFeature.markModified('children'); // Mark as modified. Without this save() -method is not updating data in database
             }
+        }
+        for (const tlv of topLevelFeatures) {
             try {
-                await topLevelFeature.save();
+                await tlv.save();
             }
             catch (error) {
                 logger.debug?.(`*** FAILED: ${error}`);
                 throw error;
             }
-            logger.debug?.(`*** Object updated in Mongo. New object: ${JSON.stringify(topLevelFeature)}`);
         }
     }
     async executeOnLocalGFF3(_backend) {
@@ -98,12 +100,13 @@ class LocationEndChange extends common_1.FeatureChange {
         if (!dataStore) {
             throw new Error('No data store');
         }
-        for (const [idx, changedId] of this.changedIds.entries()) {
-            const feature = dataStore.getFeature(changedId);
+        for (const change of this.changes) {
+            const { featureId, newEnd } = change;
+            const feature = dataStore.getFeature(featureId);
             if (!feature) {
-                throw new Error(`Could not find feature with identifier "${changedId}"`);
+                throw new Error(`Could not find feature with identifier "${featureId}"`);
             }
-            feature.setMax(this.changes[idx].newEnd);
+            feature.setMax(newEnd);
         }
     }
     getInverse() {

package/dist/Changes/LocationEndChange.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LocationEndChange.js","sourceRoot":"","sources":["../../src/Changes/LocationEndChange.ts"],"names":[],"mappings":";;;AAwKA,kDAIC;AA5KD,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,sDAOkC;AA0BlC,MAAa,iBAAkB,SAAQ,sBAAa;IAClD,QAAQ,GAAG,mBAA4B,CAAA;IACvC,OAAO,CAA4B;IAEnC,YAAY,IAAiC,EAAE,OAAuB;QACpE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,OAAO,CAAA;YAC/C,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,CAAA;QACtE,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,wJAAwJ;QACxJ,MAAM,gBAAgB,GAAsB,EAAE,CAAA;QAC9C,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;YAE5C,4DAA4D;YAC5D,IAAI,eAAmD,CAAA;YACvD,IAAI,OAAmC,CAAA;YACvC,KAAK,MAAM,GAAG,IAAI,gBAAgB,EAAE,CAAC;gBACnC,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,GAAG,EAAE,SAAS,CAAC,CAAA;gBAC1D,IAAI,YAAY,EAAE,CAAC;oBACjB,eAAe,GAAG,GAAG,CAAA;oBACrB,OAAO,GAAG,YAAY,CAAA;oBACtB,MAAK;gBACP,CAAC;YACH,CAAC;YACD,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,0DAA0D;gBAC1D,eAAe,GAAG,MAAM,YAAY;qBACjC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;qBAC9B,OAAO,CAAC,OAAO,CAAC;qBAChB,IAAI,EAAE,CAAA;gBACT,IAAI,eAAe,EAAE,CAAC;oBACpB,gBAAgB,CAAC,IAAI,CAAC,eAAe,CAAC,CAAA;gBACxC,CAAC;YACH,CAAC;YAED,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,GAAG,CAAA;gBAC7F,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;gBACvB,uHAAuH;YACzH,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,gCAAgC,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,EAAE,CAClE,CAAA;YAED,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,OAAO,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,CAAA;YAC7D,CAAC;YACD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;YAC/D,IAAI,OAAO,CAAC,GAAG,KAAK,MAAM,EAAE,CAAC;gBAC3B,MAAM,MAAM,GAAG,sCAAsC,CAAA;gBACrD,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,OAAO,CAAC,GAAG,GAAG,MAAM,CAAA;YACpB,IAAI,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5C,eAAe,CAAC,YAAY,CAAC,KAAK,CAAC,CAAA,CAAC,iFAAiF;YACvH,CAAC;iBAAM,CAAC;gBACN,eAAe,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA,CAAC,iFAAiF;YAC5H,CAAC;QACH,CAAC;QACD,KAAK,MAAM,GAAG,IAAI,gBAAgB,EAAE,CAAC;YACnC,IAAI,CAAC;gBACH,MAAM,GAAG,CAAC,IAAI,EAAE,CAAA;YAClB,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,KAAK,EAAE,CAAC,CAAA;gBACtC,MAAM,KAAK,CAAA;YACb,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;YACpC,MAAM,OAAO,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,CAAA;YAC/C,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,2CAA2C,SAAS,GAAG,CAAC,CAAA;YAC1E,CAAC;YACD,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;QACxB,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAChE,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;YAChE,SAAS,EAAE,SAAS,CAAC,SAAS;YAC9B,MAAM,EAAE,SAAS,CAAC,MAAM;YACxB,MAAM,EAAE,SAAS,CAAC,MAAM;SACzB,CAAC,CAAC,CAAA;QACH,OAAO,IAAI,iBAAiB,CAC1B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ;YACR,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAlID,8CAkIC;AAED,SAAgB,mBAAmB,CACjC,MAAe;IAEf,OAAQ,MAA4B,CAAC,QAAQ,KAAK,mBAAmB,CAAA;AACvE,CAAC"}

package/dist/Changes/LocationStartChange.js

@@ -29,15 +29,31 @@ class LocationStartChange extends common_1.FeatureChange {
     async executeOnServer(backend) {
         const { featureModel, session } = backend;
         const { changes, logger } = this;
-        const featuresForChanges = [];
         // Let's first check that all features are found and those old values match with expected ones. We do this just to be sure that all changes can be done.
+        const topLevelFeatures = [];
         for (const change of changes) {
-            const { featureId, oldStart } = change;
-            // Search correct feature
-            const topLevelFeature = await featureModel
-                .findOne({ allIds: featureId })
-                .session(session)
-                .exec();
+            const { featureId, oldStart, newStart } = change;
+            // See if we already have top-level feature for this feature
+            let topLevelFeature;
+            let feature;
+            for (const tlv of topLevelFeatures) {
+                const childFeature = this.getFeatureFromId(tlv, featureId);
+                if (childFeature) {
+                    topLevelFeature = tlv;
+                    feature = childFeature;
+                    break;
+                }
+            }
+            if (!topLevelFeature) {
+                // Don't already have top-level feature, so let's query it
+                topLevelFeature = await featureModel
+                    .findOne({ allIds: featureId })
+                    .session(session)
+                    .exec();
+                if (topLevelFeature) {
+                    topLevelFeatures.push(topLevelFeature);
+                }
+            }
             if (!topLevelFeature) {
                 const errMsg = `*** ERROR: The following featureId was not found in database ='${featureId}'`;
                 logger.error(errMsg);
@@ -45,35 +61,20 @@ class LocationStartChange extends common_1.FeatureChange {
                 // throw new NotFoundException(errMsg)  -- This is causing runtime error because Exception comes from @nestjs/common!!!
             }
             logger.debug?.(`*** TOP level feature found: ${JSON.stringify(topLevelFeature)}`);
-            const foundFeature = this.getFeatureFromId(topLevelFeature, featureId);
-            if (!foundFeature) {
+            if (!feature) {
+                feature = this.getFeatureFromId(topLevelFeature, featureId);
+            }
+            if (!feature) {
                 const errMsg = 'ERROR when searching feature by featureId';
                 logger.error(errMsg);
                 throw new Error(errMsg);
             }
-            logger.debug?.(`*** Found feature: ${JSON.stringify(foundFeature)}`);
-            if (foundFeature.min === oldStart) {
-                featuresForChanges.push({ feature: foundFeature, topLevelFeature });
-            }
-            else {
-                if (foundFeature.children) {
-                    for (const [, childFeature] of foundFeature.children) {
-                        if (childFeature.min === oldStart) {
-                            logger.debug?.(`*** UPDATE CHILD FEATURE ID= ${featureId}, CHILD: ${JSON.stringify(childFeature)}`);
-                            featuresForChanges.push({
-                                feature: childFeature,
-                                topLevelFeature,
-                            });
-                            break;
-                        }
-                    }
-                }
+            logger.debug?.(`*** Found feature: ${JSON.stringify(feature)}`);
+            if (feature.min !== oldStart) {
+                const errMsg = 'Expected previous max does not match';
+                logger.error(errMsg);
+                throw new Error(errMsg);
             }
-        }
-        // Let's update objects.
-        for (const [idx, change] of changes.entries()) {
-            const { newStart } = change;
-            const { feature, topLevelFeature } = featuresForChanges[idx];
             feature.min = newStart;
             if (topLevelFeature._id.equals(feature._id)) {
                 topLevelFeature.markModified('start'); // Mark as modified. Without this save() -method is not updating data in database
@@ -81,14 +82,15 @@ class LocationStartChange extends common_1.FeatureChange {
             else {
                 topLevelFeature.markModified('children'); // Mark as modified. Without this save() -method is not updating data in database
             }
+        }
+        for (const tlv of topLevelFeatures) {
             try {
-                await topLevelFeature.save();
+                await tlv.save();
             }
             catch (error) {
                 logger.debug?.(`*** FAILED: ${error}`);
                 throw error;
             }
-            logger.debug?.(`*** Object updated in Mongo. New object: ${JSON.stringify(topLevelFeature)}`);
         }
     }
     async executeOnLocalGFF3(_backend) {
@@ -98,12 +100,13 @@ class LocationStartChange extends common_1.FeatureChange {
         if (!dataStore) {
             throw new Error('No data store');
         }
-        for (const [idx, changedId] of this.changedIds.entries()) {
-            const feature = dataStore.getFeature(changedId);
+        for (const change of this.changes) {
+            const { featureId, newStart } = change;
+            const feature = dataStore.getFeature(featureId);
             if (!feature) {
-                throw new Error(`Could not find feature with identifier "${changedId}"`);
+                throw new Error(`Could not find feature with identifier "${featureId}"`);
             }
-            feature.setMin(this.changes[idx].newStart);
+            feature.setMin(newStart);
         }
     }
     getInverse() {

package/dist/Changes/LocationStartChange.js.map

@@ -1 +1 @@
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package/dist/Changes/MergeExonsChange.d.ts

@@ -0,0 +1,29 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { UndoMergeExonsChange } from './UndoMergeExonsChange';
+interface SerializedMergeExonsChangeBase extends SerializedFeatureChange {
+    typeName: 'MergeExonsChange';
+}
+export interface MergeExonsChangeDetails {
+    firstExon: AnnotationFeatureSnapshot;
+    secondExon: AnnotationFeatureSnapshot;
+    parentFeatureId: string;
+}
+interface SerializedMergeExonsChangeSingle extends SerializedMergeExonsChangeBase, MergeExonsChangeDetails {
+}
+interface SerializedMergeExonsChangeMultiple extends SerializedMergeExonsChangeBase {
+    changes: MergeExonsChangeDetails[];
+}
+export type SerializedMergeExonsChange = SerializedMergeExonsChangeSingle | SerializedMergeExonsChangeMultiple;
+export declare class MergeExonsChange extends FeatureChange {
+    typeName: "MergeExonsChange";
+    changes: MergeExonsChangeDetails[];
+    constructor(json: SerializedMergeExonsChange, options?: ChangeOptions);
+    get notification(): string;
+    toJSON(): SerializedMergeExonsChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    getInverse(): UndoMergeExonsChange;
+}
+export {};

package/dist/Changes/MergeExonsChange.js

@@ -0,0 +1,114 @@
+"use strict";
+/* eslint-disable unicorn/prefer-structured-clone */
+/* eslint-disable @typescript-eslint/require-await */
+/* eslint-disable @typescript-eslint/no-unsafe-assignment */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.MergeExonsChange = void 0;
+const common_1 = require("@apollo-annotation/common");
+const util_1 = require("../util");
+const DeleteFeatureChange_1 = require("./DeleteFeatureChange");
+const UndoMergeExonsChange_1 = require("./UndoMergeExonsChange");
+class MergeExonsChange extends common_1.FeatureChange {
+    typeName = 'MergeExonsChange';
+    changes;
+    constructor(json, options) {
+        super(json, options);
+        this.changes = 'changes' in json ? json.changes : [json];
+    }
+    // eslint-disable-next-line @typescript-eslint/class-literal-property-style
+    get notification() {
+        return 'Exons successfully merged';
+    }
+    toJSON() {
+        const { assembly, changedIds, changes, typeName } = this;
+        if (changes.length === 1) {
+            const [{ firstExon, secondExon, parentFeatureId }] = changes;
+            return {
+                typeName,
+                changedIds,
+                assembly,
+                firstExon,
+                secondExon,
+                parentFeatureId,
+            };
+        }
+        return { typeName, changedIds, assembly, changes };
+    }
+    async executeOnServer(backend) {
+        const { featureModel, session } = backend;
+        const { changes, logger } = this;
+        for (const change of changes) {
+            const { firstExon, secondExon } = change;
+            const topLevelFeature = await featureModel
+                .findOne({ allIds: firstExon._id })
+                .session(session)
+                .exec();
+            if (!topLevelFeature) {
+                const errMsg = `*** ERROR: The following featureId was not found in database ='${firstExon._id}'`;
+                logger.error(errMsg);
+                throw new Error(errMsg);
+            }
+            const mergedExon = this.getFeatureFromId(topLevelFeature, firstExon._id);
+            if (!mergedExon) {
+                const errMsg = 'ERROR when searching feature by featureId';
+                logger.error(errMsg);
+                throw new Error(errMsg);
+            }
+            mergedExon.min = Math.min(firstExon.min, secondExon.min);
+            mergedExon.max = Math.max(firstExon.max, secondExon.max);
+            const mergedAttributes = mergedExon.attributes
+                ? JSON.parse(JSON.stringify(mergedExon.attributes))
+                : {};
+            mergedAttributes.merged_with = [
+                (0, util_1.stringifyAttributes)((0, util_1.attributesToRecords)(secondExon.attributes)),
+            ];
+            mergedExon.attributes = mergedAttributes;
+            const deletedIds = (0, DeleteFeatureChange_1.findAndDeleteChildFeature)(topLevelFeature, secondExon._id, this);
+            deletedIds.push(secondExon._id);
+            topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
+            await topLevelFeature.save();
+        }
+    }
+    async executeOnLocalGFF3(_backend) {
+        throw new Error('executeOnLocalGFF3 not implemented');
+    }
+    async executeOnClient(dataStore) {
+        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
+        if (!dataStore) {
+            throw new Error('No data store');
+        }
+        for (const change of this.changes) {
+            const { firstExon, secondExon } = change;
+            const mergedExon = dataStore.getFeature(firstExon._id);
+            if (!mergedExon) {
+                throw new Error(`Could not find feature with identifier "${firstExon._id}"`);
+            }
+            mergedExon.setMin(Math.min(firstExon.min, secondExon.min));
+            mergedExon.setMax(Math.max(firstExon.max, secondExon.max));
+            const mrg = mergedExon.attributes.get('merged_with')?.slice() ?? [];
+            const mergedWith = (0, util_1.stringifyAttributes)((0, util_1.attributesToRecords)(secondExon.attributes));
+            if (!mrg.includes(mergedWith)) {
+                mrg.push(mergedWith);
+            }
+            mergedExon.setAttribute('merged_with', mrg);
+            mergedExon.parent?.deleteChild(secondExon._id);
+        }
+    }
+    getInverse() {
+        const { assembly, changedIds, changes, logger } = this;
+        const inverseChangedIds = [...changedIds].reverse();
+        const inverseChanges = [...changes].reverse().map((mergeExonChange) => ({
+            exonsToRestore: [mergeExonChange.firstExon, mergeExonChange.secondExon],
+            parentFeatureId: mergeExonChange.parentFeatureId,
+        }));
+        logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
+        return new UndoMergeExonsChange_1.UndoMergeExonsChange({
+            changedIds: inverseChangedIds,
+            typeName: 'UndoMergeExonsChange',
+            changes: inverseChanges,
+            assembly,
+        }, { logger });
+    }
+}
+exports.MergeExonsChange = MergeExonsChange;
+//# sourceMappingURL=MergeExonsChange.js.map

package/dist/Changes/MergeExonsChange.js.map

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package/dist/Changes/MergeTranscriptsChange.d.ts

@@ -0,0 +1,34 @@
+import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
+import { type AnnotationFeature, type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { type Feature } from '@apollo-annotation/schemas';
+import { UndoMergeTranscriptsChange } from './UndoMergeTranscriptsChange';
+interface SerializedMergeTranscriptsChangeBase extends SerializedFeatureChange {
+    typeName: 'MergeTranscriptsChange';
+}
+export interface MergeTranscriptsChangeDetails {
+    firstTranscript: AnnotationFeatureSnapshot;
+    secondTranscript: AnnotationFeatureSnapshot;
+    parentFeatureId: string;
+}
+interface SerializedMergeTranscriptsChangeSingle extends SerializedMergeTranscriptsChangeBase, MergeTranscriptsChangeDetails {
+}
+interface SerializedMergeTranscriptsChangeMultiple extends SerializedMergeTranscriptsChangeBase {
+    changes: MergeTranscriptsChangeDetails[];
+}
+export type SerializedMergeTranscriptsChange = SerializedMergeTranscriptsChangeSingle | SerializedMergeTranscriptsChangeMultiple;
+export declare class MergeTranscriptsChange extends FeatureChange {
+    typeName: "MergeTranscriptsChange";
+    changes: MergeTranscriptsChangeDetails[];
+    constructor(json: SerializedMergeTranscriptsChange, options?: ChangeOptions);
+    get notification(): string;
+    toJSON(): SerializedMergeTranscriptsChange;
+    executeOnServer(backend: ServerDataStore): Promise<void>;
+    mergeTranscriptsOnServer(firstTranscript: Feature, secondTranscript: AnnotationFeatureSnapshot): void;
+    mergeFeatureIntoTranscriptOnServer(secondFeatureChild: AnnotationFeatureSnapshot, firstTranscript: Feature): void;
+    executeOnClient(dataStore: ClientDataStore): Promise<void>;
+    mergeTranscriptsOnClient(firstTranscript: AnnotationFeature, secondTranscript: AnnotationFeatureSnapshot): void;
+    mergeFeatureIntoTranscriptOnClient(secondFeatureChild: AnnotationFeatureSnapshot, firstTranscript: AnnotationFeature): void;
+    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
+    getInverse(): UndoMergeTranscriptsChange;
+}
+export {};