@apollo-annotation/shared 0.3.13 → 1.0.0

package/dist/Changes/UndoMergeTranscriptsChange.js

@@ -1,100 +0,0 @@
-/* eslint-disable @typescript-eslint/require-await */
-import { FeatureChange, } from '@apollo-annotation/common';
-import { MergeTranscriptsChange } from './MergeTranscriptsChange.js';
-export class UndoMergeTranscriptsChange extends FeatureChange {
-    typeName = 'UndoMergeTranscriptsChange';
-    changes;
-    constructor(json, options) {
-        super(json, options);
-        this.changes = 'changes' in json ? json.changes : [json];
-    }
-    toJSON() {
-        const { assembly, changedIds, changes, typeName } = this;
-        if (changes.length === 1) {
-            const [{ transcriptsToRestore, parentFeatureId }] = changes;
-            return {
-                typeName,
-                changedIds,
-                assembly,
-                transcriptsToRestore,
-                parentFeatureId,
-            };
-        }
-        return { typeName, changedIds, assembly, changes };
-    }
-    async executeOnServer(backend) {
-        const { featureModel, session } = backend;
-        const { changes } = this;
-        for (const change of changes) {
-            const { transcriptsToRestore, parentFeatureId } = change;
-            if (transcriptsToRestore.length !== 2) {
-                throw new Error(`Expected exactly two transcripts to restore. Got :${transcriptsToRestore.length}`);
-            }
-            const topLevelFeature = await featureModel
-                .findOne({ allIds: parentFeatureId })
-                .session(session)
-                .exec();
-            if (!topLevelFeature) {
-                throw new Error(`Could not find feature with ID "${parentFeatureId}"`);
-            }
-            const parentFeature = this.getFeatureFromId(topLevelFeature, parentFeatureId);
-            if (!parentFeature) {
-                throw new Error(`Could not find feature with ID "${parentFeatureId}" in feature "${topLevelFeature._id.toString()}"`);
-            }
-            if (!parentFeature.children) {
-                parentFeature.children = new Map();
-            }
-            for (const transcript of transcriptsToRestore) {
-                this.addChild(parentFeature, transcript);
-                const childIds = this.getChildFeatureIds(transcript);
-                topLevelFeature.allIds.push(transcript._id, ...childIds);
-            }
-            await topLevelFeature.save();
-        }
-    }
-    async executeOnLocalGFF3(_backend) {
-        throw new Error('executeOnLocalGFF3 not implemented');
-    }
-    async executeOnClient(dataStore) {
-        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
-        if (!dataStore) {
-            throw new Error('No data store');
-        }
-        const { changes } = this;
-        for (const change of changes) {
-            const { transcriptsToRestore, parentFeatureId } = change;
-            if (!parentFeatureId) {
-                throw new Error('Parent ID is missing');
-            }
-            const parentFeature = dataStore.getFeature(parentFeatureId);
-            if (!parentFeature) {
-                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
-            }
-            // create an ID for the parent feature if it does not have one
-            if (!parentFeature.attributes.get('_id')) {
-                parentFeature.setAttribute('_id', [parentFeature._id]);
-            }
-            for (const transcript of transcriptsToRestore) {
-                parentFeature.addChild(transcript);
-            }
-        }
-    }
-    getInverse() {
-        const { assembly, changedIds, changes, logger } = this;
-        const inverseChangedIds = [...changedIds].reverse();
-        const inverseChanges = [...changes]
-            .reverse()
-            .map((undoMergeTranscriptsChange) => ({
-            firstTranscript: undoMergeTranscriptsChange.transcriptsToRestore[0],
-            secondTranscript: undoMergeTranscriptsChange.transcriptsToRestore[1],
-            parentFeatureId: undoMergeTranscriptsChange.parentFeatureId,
-        }));
-        return new MergeTranscriptsChange({
-            changedIds: inverseChangedIds,
-            typeName: 'MergeTranscriptsChange',
-            changes: inverseChanges,
-            assembly,
-        }, { logger });
-    }
-}
-//# sourceMappingURL=UndoMergeTranscriptsChange.js.map

package/dist/Changes/UndoMergeTranscriptsChange.js.map

@@ -1 +0,0 @@
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package/dist/Changes/UndoSplitExonChange.d.ts

@@ -1,33 +0,0 @@
-import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
-import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
-import { SplitExonChange } from './SplitExonChange.js';
-interface SerializedUndoSplitExonChangeBase extends SerializedFeatureChange {
-    typeName: 'UndoSplitExonChange';
-}
-export interface UndoSplitExonChangeDetails {
-    exonToRestore: AnnotationFeatureSnapshot;
-    parentFeatureId: string;
-    idsToDelete: string[];
-    upstreamCut: number;
-    downstreamCut: number;
-    leftExonId: string;
-    rightExonId: string;
-}
-interface SerializedUndoSplitExonChangeSingle extends SerializedUndoSplitExonChangeBase, UndoSplitExonChangeDetails {
-}
-interface SerializedUndoSplitExonChangeMultiple extends SerializedUndoSplitExonChangeBase {
-    changes: UndoSplitExonChangeDetails[];
-}
-export type SerializedUndoSplitExonChange = SerializedUndoSplitExonChangeSingle | SerializedUndoSplitExonChangeMultiple;
-export declare class UndoSplitExonChange extends FeatureChange {
-    typeName: "UndoSplitExonChange";
-    changes: UndoSplitExonChangeDetails[];
-    constructor(json: SerializedUndoSplitExonChange, options?: ChangeOptions);
-    toJSON(): SerializedUndoSplitExonChange;
-    executeOnServer(backend: ServerDataStore): Promise<void>;
-    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
-    executeOnClient(dataStore: ClientDataStore): Promise<void>;
-    getInverse(): SplitExonChange;
-}
-export {};
-//# sourceMappingURL=UndoSplitExonChange.d.ts.map

package/dist/Changes/UndoSplitExonChange.d.ts.map

@@ -1 +0,0 @@
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package/dist/Changes/UndoSplitExonChange.js

@@ -1,107 +0,0 @@
-/* eslint-disable @typescript-eslint/require-await */
-import { FeatureChange, } from '@apollo-annotation/common';
-import { findAndDeleteChildFeature } from './DeleteFeatureChange.js';
-import { SplitExonChange } from './SplitExonChange.js';
-export class UndoSplitExonChange extends FeatureChange {
-    typeName = 'UndoSplitExonChange';
-    changes;
-    constructor(json, options) {
-        super(json, options);
-        this.changes = 'changes' in json ? json.changes : [json];
-    }
-    toJSON() {
-        const { assembly, changedIds, changes, typeName } = this;
-        if (changes.length === 1) {
-            const [{ exonToRestore, parentFeatureId, idsToDelete, upstreamCut, downstreamCut, leftExonId, rightExonId, },] = changes;
-            return {
-                typeName,
-                changedIds,
-                assembly,
-                exonToRestore,
-                parentFeatureId,
-                idsToDelete,
-                upstreamCut,
-                downstreamCut,
-                leftExonId,
-                rightExonId,
-            };
-        }
-        return { typeName, changedIds, assembly, changes };
-    }
-    async executeOnServer(backend) {
-        const { featureModel, session } = backend;
-        const { changes } = this;
-        for (const change of changes) {
-            const { exonToRestore, parentFeatureId, idsToDelete } = change;
-            const topLevelFeature = await featureModel
-                .findOne({ allIds: parentFeatureId })
-                .session(session)
-                .exec();
-            if (!topLevelFeature) {
-                throw new Error(`Could not find feature with ID "${parentFeatureId}"`);
-            }
-            const parentFeature = this.getFeatureFromId(topLevelFeature, parentFeatureId);
-            if (!parentFeature) {
-                throw new Error(`Could not find feature with ID "${parentFeatureId}" in feature "${topLevelFeature._id.toString()}"`);
-            }
-            if (!parentFeature.children) {
-                parentFeature.children = new Map();
-            }
-            this.addChild(parentFeature, exonToRestore);
-            const childIds = this.getChildFeatureIds(exonToRestore);
-            topLevelFeature.allIds.push(exonToRestore._id, ...childIds);
-            topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !idsToDelete.includes(id));
-            idsToDelete.map((id) => findAndDeleteChildFeature(topLevelFeature, id, this));
-            await topLevelFeature.save();
-        }
-    }
-    async executeOnLocalGFF3(_backend) {
-        throw new Error('executeOnLocalGFF3 not implemented');
-    }
-    async executeOnClient(dataStore) {
-        // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
-        if (!dataStore) {
-            throw new Error('No data store');
-        }
-        const { changes } = this;
-        for (const change of changes) {
-            const { exonToRestore, parentFeatureId, idsToDelete } = change;
-            if (!parentFeatureId) {
-                throw new Error('Parent ID is missing');
-            }
-            const parentFeature = dataStore.getFeature(parentFeatureId);
-            if (!parentFeature) {
-                throw new Error(`Could not find parent feature "${parentFeatureId}"`);
-            }
-            // create an ID for the parent feature if it does not have one
-            if (!parentFeature.attributes.get('_id')) {
-                parentFeature.setAttribute('_id', [parentFeature._id]);
-            }
-            parentFeature.addChild(exonToRestore);
-            idsToDelete.map((id) => {
-                parentFeature.deleteChild(id);
-            });
-        }
-    }
-    getInverse() {
-        const { assembly, changedIds, changes, logger } = this;
-        const inverseChangedIds = [...changedIds].reverse();
-        const inverseChanges = [...changes]
-            .reverse()
-            .map((undoSplitExonChange) => ({
-            parentFeatureId: undoSplitExonChange.parentFeatureId,
-            exonToBeSplit: undoSplitExonChange.exonToRestore,
-            upstreamCut: undoSplitExonChange.upstreamCut,
-            downstreamCut: undoSplitExonChange.downstreamCut,
-            leftExonId: undoSplitExonChange.leftExonId,
-            rightExonId: undoSplitExonChange.rightExonId,
-        }));
-        return new SplitExonChange({
-            changedIds: inverseChangedIds,
-            typeName: 'SplitExonChange',
-            changes: inverseChanges,
-            assembly,
-        }, { logger });
-    }
-}
-//# sourceMappingURL=UndoSplitExonChange.js.map

package/dist/Changes/UndoSplitExonChange.js.map

@@ -1 +0,0 @@
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package/dist/Operations/GetAssembliesOperation.d.ts

@@ -1,12 +0,0 @@
-import { type LocalGFF3DataStore, Operation, type SerializedOperation, type ServerDataStore } from '@apollo-annotation/common';
-interface SerializedGetAssembliesOperation extends SerializedOperation {
-    typeName: 'GetAssembliesOperation';
-}
-export declare class GetAssembliesOperation extends Operation {
-    typeName: "GetAssembliesOperation";
-    toJSON(): SerializedGetAssembliesOperation;
-    executeOnServer(backend: ServerDataStore): Promise<any[]>;
-    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
-}
-export {};
-//# sourceMappingURL=GetAssembliesOperation.d.ts.map

package/dist/Operations/GetAssembliesOperation.d.ts.map

@@ -1 +0,0 @@
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package/dist/Operations/GetAssembliesOperation.js

@@ -1,16 +0,0 @@
-/* eslint-disable @typescript-eslint/require-await */
-import { Operation, } from '@apollo-annotation/common';
-export class GetAssembliesOperation extends Operation {
-    typeName = 'GetAssembliesOperation';
-    toJSON() {
-        const { typeName } = this;
-        return { typeName };
-    }
-    executeOnServer(backend) {
-        return backend.assemblyModel.find({ status: 0 }).exec();
-    }
-    async executeOnLocalGFF3(_backend) {
-        throw new Error('executeOnLocalGFF3 not implemented');
-    }
-}
-//# sourceMappingURL=GetAssembliesOperation.js.map

package/dist/Operations/GetAssembliesOperation.js.map

@@ -1 +0,0 @@
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package/dist/Operations/GetFeaturesOperation.d.ts

@@ -1,27 +0,0 @@
-import { type LocalGFF3DataStore, Operation, type OperationOptions, type SerializedOperation, type ServerDataStore } from '@apollo-annotation/common';
-interface SerializedGetFeaturesOperation extends SerializedOperation {
-    typeName: 'GetFeaturesOperation';
-    refSeq: string;
-    start: number;
-    end: number;
-}
-export declare class GetFeaturesOperation extends Operation {
-    typeName: "GetFeaturesOperation";
-    refSeq: string;
-    start: number;
-    end: number;
-    constructor(json: SerializedGetFeaturesOperation, options?: OperationOptions);
-    toJSON(): SerializedGetFeaturesOperation;
-    /**
-     * Fetch features based on Reference seq, Start and End -values
-     * @param request - Contain search criteria i.e. refSeq, start and end -parameters
-     * @returns Return Array of features if search was successful
-     * or if search data was not found or in case of error throw exception
-     */
-    executeOnServer(backend: ServerDataStore): Promise<(import("@apollo-annotation/schemas").FeatureDocument & Required<{
-        _id: import("mongoose").Types.ObjectId;
-    }>)[]>;
-    executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
-}
-export {};
-//# sourceMappingURL=GetFeaturesOperation.d.ts.map

package/dist/Operations/GetFeaturesOperation.d.ts.map

@@ -1 +0,0 @@
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package/dist/Operations/GetFeaturesOperation.js

@@ -1,38 +0,0 @@
-/* eslint-disable @typescript-eslint/require-await */
-import { Operation, } from '@apollo-annotation/common';
-export class GetFeaturesOperation extends Operation {
-    typeName = 'GetFeaturesOperation';
-    refSeq;
-    start;
-    end;
-    constructor(json, options) {
-        super(json, options);
-        this.refSeq = json.refSeq;
-        this.start = json.start;
-        this.end = json.end;
-    }
-    toJSON() {
-        const { end, refSeq, start, typeName } = this;
-        return { typeName, refSeq, start, end };
-    }
-    /**
-     * Fetch features based on Reference seq, Start and End -values
-     * @param request - Contain search criteria i.e. refSeq, start and end -parameters
-     * @returns Return Array of features if search was successful
-     * or if search data was not found or in case of error throw exception
-     */
-    executeOnServer(backend) {
-        return backend.featureModel
-            .find({
-            refSeq: this.refSeq,
-            min: { $lte: this.end },
-            max: { $gte: this.start },
-            status: 0,
-        })
-            .exec();
-    }
-    async executeOnLocalGFF3(_backend) {
-        throw new Error('executeOnLocalGFF3 not implemented');
-    }
-}
-//# sourceMappingURL=GetFeaturesOperation.js.map

package/dist/Operations/GetFeaturesOperation.js.map

@@ -1 +0,0 @@
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package/dist/Operations/index.d.ts

@@ -1,9 +0,0 @@
-import { GetAssembliesOperation } from './GetAssembliesOperation.js';
-import { GetFeaturesOperation } from './GetFeaturesOperation.js';
-export declare const operations: {
-    GetAssembliesOperation: typeof GetAssembliesOperation;
-    GetFeaturesOperation: typeof GetFeaturesOperation;
-};
-export * from './GetAssembliesOperation.js';
-export * from './GetFeaturesOperation.js';
-//# sourceMappingURL=index.d.ts.map

package/dist/Operations/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/Operations/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AACpE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAEhE,eAAO,MAAM,UAAU;;;CAAmD,CAAA;AAC1E,cAAc,6BAA6B,CAAA;AAC3C,cAAc,2BAA2B,CAAA"}

package/dist/Operations/index.js

@@ -1,6 +0,0 @@
-import { GetAssembliesOperation } from './GetAssembliesOperation.js';
-import { GetFeaturesOperation } from './GetFeaturesOperation.js';
-export const operations = { GetAssembliesOperation, GetFeaturesOperation };
-export * from './GetAssembliesOperation.js';
-export * from './GetFeaturesOperation.js';
-//# sourceMappingURL=index.js.map

package/dist/Operations/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/Operations/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AACpE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAEhE,MAAM,CAAC,MAAM,UAAU,GAAG,EAAE,sBAAsB,EAAE,oBAAoB,EAAE,CAAA;AAC1E,cAAc,6BAA6B,CAAA;AAC3C,cAAc,2BAA2B,CAAA"}

package/src/Changes/AddFeatureChange.ts

@@ -1,236 +0,0 @@
-/* eslint-disable @typescript-eslint/no-unsafe-assignment */
-/* eslint-disable @typescript-eslint/restrict-template-expressions */
-/* eslint-disable @typescript-eslint/require-await */
-/* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import {
-  type ChangeOptions,
-  type ClientDataStore,
-  FeatureChange,
-  type LocalGFF3DataStore,
-  type SerializedFeatureChange,
-  type ServerDataStore,
-} from '@apollo-annotation/common'
-import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst'
-
-import { DeleteFeatureChange } from './DeleteFeatureChange.js'
-
-interface SerializedAddFeatureChangeBase extends SerializedFeatureChange {
-  typeName: 'AddFeatureChange'
-}
-
-export interface AddFeatureChangeDetails {
-  addedFeature: AnnotationFeatureSnapshot
-  parentFeatureId?: string // Parent feature to where feature will be added
-  copyFeature?: boolean // Are we copying or adding a new child feature
-  allIds?: string[]
-}
-
-interface SerializedAddFeatureChangeSingle
-  extends SerializedAddFeatureChangeBase,
-    AddFeatureChangeDetails {}
-
-interface SerializedAddFeatureChangeMultiple
-  extends SerializedAddFeatureChangeBase {
-  changes: AddFeatureChangeDetails[]
-}
-
-export type SerializedAddFeatureChange =
-  | SerializedAddFeatureChangeSingle
-  | SerializedAddFeatureChangeMultiple
-
-export class AddFeatureChange extends FeatureChange {
-  typeName = 'AddFeatureChange' as const
-  changes: AddFeatureChangeDetails[]
-
-  constructor(json: SerializedAddFeatureChange, options?: ChangeOptions) {
-    super(json, options)
-    this.changes = 'changes' in json ? json.changes : [json]
-  }
-  // eslint-disable-next-line @typescript-eslint/class-literal-property-style
-  get notification() {
-    return 'Feature added successfully'
-  }
-
-  toJSON(): SerializedAddFeatureChange {
-    const { assembly, changedIds, changes, typeName } = this
-    if (changes.length === 1) {
-      const [{ addedFeature, allIds, copyFeature, parentFeatureId }] = changes
-      return {
-        typeName,
-        changedIds,
-        assembly,
-        addedFeature,
-        parentFeatureId,
-        copyFeature,
-        allIds,
-      }
-    }
-    return { typeName, changedIds, assembly, changes }
-  }
-
-  /**
-   * Applies the required change to database
-   * @param backend - parameters from backend
-   * @returns
-   */
-  async executeOnServer(backend: ServerDataStore) {
-    const { assemblyModel, featureModel, refSeqModel, session, user } = backend
-    const { assembly, changes, logger } = this
-
-    const assemblyDoc = await assemblyModel
-      .findById(assembly)
-      .session(session)
-      .exec()
-    if (!assemblyDoc) {
-      const errMsg = `*** ERROR: Assembly with id "${assembly}" not found`
-      logger.error(errMsg)
-      throw new Error(errMsg)
-    }
-
-    let featureCnt = 0
-    logger.debug?.(`changes: ${JSON.stringify(changes)}`)
-
-    const { INDEXED_IDS } = process.env
-    let idsToIndex: string[] | undefined
-    if (INDEXED_IDS) {
-      idsToIndex = INDEXED_IDS.split(',')
-    }
-
-    // Loop the changes
-    for (const change of changes) {
-      logger.debug?.(`change: ${JSON.stringify(change)}`)
-      const { addedFeature, allIds, copyFeature, parentFeatureId } = change
-      const { _id, refSeq } = addedFeature
-      const refSeqDoc = await refSeqModel
-        .findById(refSeq)
-        .session(session)
-        .exec()
-      if (!refSeqDoc) {
-        throw new Error(
-          `RefSeq was not found by assembly "${assembly}" and seq_id "${refSeq}" not found`,
-        )
-      }
-
-      // CopyFeature is called from CopyFeature.tsx
-      if (copyFeature) {
-        const indexedIds = this.getIndexedIds(addedFeature, idsToIndex)
-        // Add into Mongo
-        const [newFeatureDoc] = await featureModel.create(
-          [{ ...addedFeature, allIds, indexedIds, status: -1, user }],
-          { session },
-        )
-        logger.debug?.(
-          `Copied feature, docId "${newFeatureDoc._id}" to assembly "${assembly}"`,
-        )
-        featureCnt++
-      } else {
-        const indexedIds = this.getIndexedIds(addedFeature, idsToIndex)
-        // Adding new child feature
-        if (parentFeatureId) {
-          const topLevelFeature = await featureModel
-            .findOne({ allIds: parentFeatureId })
-            .session(session)
-            .exec()
-          if (!topLevelFeature) {
-            throw new Error(
-              `Could not find feature with ID "${parentFeatureId}"`,
-            )
-          }
-          const parentFeature = this.getFeatureFromId(
-            topLevelFeature,
-            parentFeatureId,
-          )
-          if (!parentFeature) {
-            throw new Error(
-              `Could not find feature with ID "${parentFeatureId}" in feature "${topLevelFeature._id}"`,
-            )
-          }
-          this.addChild(parentFeature, addedFeature)
-          const childIds = this.getChildFeatureIds(addedFeature)
-          topLevelFeature.allIds.push(_id, ...childIds)
-          if (indexedIds.length > 0 && !topLevelFeature.indexedIds) {
-            topLevelFeature.indexedIds = []
-          }
-          topLevelFeature.indexedIds?.push(...indexedIds)
-          await topLevelFeature.save()
-        } else {
-          const childIds = this.getChildFeatureIds(addedFeature)
-          const allIdsV2 = [_id, ...childIds]
-          const [newFeatureDoc] = await featureModel.create(
-            [{ allIds: allIdsV2, indexedIds, status: 0, ...addedFeature }],
-            { session },
-          )
-          logger.verbose?.(`Added docId "${newFeatureDoc._id}"`)
-        }
-      }
-      featureCnt++
-    }
-    logger.debug?.(`Added ${featureCnt} new feature(s) into database.`)
-  }
-
-  async executeOnLocalGFF3(_backend: LocalGFF3DataStore) {
-    throw new Error('executeOnLocalGFF3 not implemented')
-  }
-
-  async executeOnClient(dataStore: ClientDataStore) {
-    if (!dataStore) {
-      throw new Error('No data store')
-    }
-    const { assembly, changes } = this
-    for (const change of changes) {
-      const { addedFeature, parentFeatureId } = change
-      if (parentFeatureId) {
-        let parentFeature = dataStore.getFeature(parentFeatureId)
-        // maybe the parent feature hasn't been loaded yet
-        if (!parentFeature) {
-          await dataStore.loadFeatures([
-            {
-              assemblyName: assembly,
-              refName: addedFeature.refSeq,
-              start: addedFeature.min,
-              end: addedFeature.max,
-            },
-          ])
-          parentFeature = dataStore.getFeature(parentFeatureId)
-          if (!parentFeature) {
-            throw new Error(
-              `Could not find parent feature "${parentFeatureId}"`,
-            )
-          }
-        }
-        // create an ID for the parent feature if it does not have one
-        if (!parentFeature.attributes.get('_id')) {
-          parentFeature.setAttribute('_id', [parentFeature._id])
-        }
-        parentFeature.addChild(addedFeature)
-      } else {
-        dataStore.addFeature(assembly, addedFeature)
-      }
-    }
-  }
-
-  getInverse() {
-    const { assembly, changedIds, changes, logger } = this
-    const inverseChangedIds = [...changedIds].reverse()
-    const inverseChanges = [...changes].reverse().map((addFeatureChange) => ({
-      deletedFeature: addFeatureChange.addedFeature,
-      parentFeatureId: addFeatureChange.parentFeatureId,
-    }))
-
-    return new DeleteFeatureChange(
-      {
-        changedIds: inverseChangedIds,
-        typeName: 'DeleteFeatureChange',
-        changes: inverseChanges,
-        assembly,
-      },
-      { logger },
-    )
-  }
-}
-
-export function isAddFeatureChange(
-  change: unknown,
-): change is AddFeatureChange {
-  return (change as AddFeatureChange).typeName === 'AddFeatureChange'
-}