@apollo-annotation/shared 0.3.11 → 0.3.12

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Files changed (247) hide show
  1. package/dist/Changes/AddAssemblyAliasesChange.d.ts +1 -0
  2. package/dist/Changes/AddAssemblyAliasesChange.d.ts.map +1 -0
  3. package/dist/Changes/AddAssemblyAliasesChange.js +7 -9
  4. package/dist/Changes/AddAssemblyAliasesChange.js.map +1 -1
  5. package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts +5 -3
  6. package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.d.ts.map +1 -0
  7. package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js +31 -13
  8. package/dist/Changes/AddAssemblyAndFeaturesFromFileChange.js.map +1 -1
  9. package/dist/Changes/AddAssemblyFromExternalChange.d.ts +1 -0
  10. package/dist/Changes/AddAssemblyFromExternalChange.d.ts.map +1 -0
  11. package/dist/Changes/AddAssemblyFromExternalChange.js +13 -16
  12. package/dist/Changes/AddAssemblyFromExternalChange.js.map +1 -1
  13. package/dist/Changes/AddAssemblyFromFileChange.d.ts +3 -2
  14. package/dist/Changes/AddAssemblyFromFileChange.d.ts.map +1 -0
  15. package/dist/Changes/AddAssemblyFromFileChange.js +4 -8
  16. package/dist/Changes/AddAssemblyFromFileChange.js.map +1 -1
  17. package/dist/Changes/AddFeatureChange.d.ts +3 -2
  18. package/dist/Changes/AddFeatureChange.d.ts.map +1 -0
  19. package/dist/Changes/AddFeatureChange.js +6 -10
  20. package/dist/Changes/AddFeatureChange.js.map +1 -1
  21. package/dist/Changes/AddFeaturesFromFileChange.d.ts +5 -3
  22. package/dist/Changes/AddFeaturesFromFileChange.d.ts.map +1 -0
  23. package/dist/Changes/AddFeaturesFromFileChange.js +27 -14
  24. package/dist/Changes/AddFeaturesFromFileChange.js.map +1 -1
  25. package/dist/Changes/AddRefSeqAliasesChange.d.ts +1 -0
  26. package/dist/Changes/AddRefSeqAliasesChange.d.ts.map +1 -0
  27. package/dist/Changes/AddRefSeqAliasesChange.js +7 -8
  28. package/dist/Changes/AddRefSeqAliasesChange.js.map +1 -1
  29. package/dist/Changes/DeleteAssemblyChange.d.ts +1 -0
  30. package/dist/Changes/DeleteAssemblyChange.d.ts.map +1 -0
  31. package/dist/Changes/DeleteAssemblyChange.js +5 -8
  32. package/dist/Changes/DeleteAssemblyChange.js.map +1 -1
  33. package/dist/Changes/DeleteFeatureChange.d.ts +4 -3
  34. package/dist/Changes/DeleteFeatureChange.d.ts.map +1 -0
  35. package/dist/Changes/DeleteFeatureChange.js +6 -12
  36. package/dist/Changes/DeleteFeatureChange.js.map +1 -1
  37. package/dist/Changes/DeleteUserChange.d.ts +1 -0
  38. package/dist/Changes/DeleteUserChange.d.ts.map +1 -0
  39. package/dist/Changes/DeleteUserChange.js +2 -6
  40. package/dist/Changes/DeleteUserChange.js.map +1 -1
  41. package/dist/Changes/FeatureAttributeChange.d.ts +1 -0
  42. package/dist/Changes/FeatureAttributeChange.d.ts.map +1 -0
  43. package/dist/Changes/FeatureAttributeChange.js +3 -8
  44. package/dist/Changes/FeatureAttributeChange.js.map +1 -1
  45. package/dist/Changes/FromFileBaseChange.d.ts +4 -3
  46. package/dist/Changes/FromFileBaseChange.d.ts.map +1 -0
  47. package/dist/Changes/FromFileBaseChange.js +4 -10
  48. package/dist/Changes/FromFileBaseChange.js.map +1 -1
  49. package/dist/Changes/ImportJBrowseConfigChange.d.ts +1 -0
  50. package/dist/Changes/ImportJBrowseConfigChange.d.ts.map +1 -0
  51. package/dist/Changes/ImportJBrowseConfigChange.js +3 -8
  52. package/dist/Changes/ImportJBrowseConfigChange.js.map +1 -1
  53. package/dist/Changes/LocationEndChange.d.ts +1 -0
  54. package/dist/Changes/LocationEndChange.d.ts.map +1 -0
  55. package/dist/Changes/LocationEndChange.js +3 -8
  56. package/dist/Changes/LocationEndChange.js.map +1 -1
  57. package/dist/Changes/LocationStartChange.d.ts +1 -0
  58. package/dist/Changes/LocationStartChange.d.ts.map +1 -0
  59. package/dist/Changes/LocationStartChange.js +3 -8
  60. package/dist/Changes/LocationStartChange.js.map +1 -1
  61. package/dist/Changes/MergeExonsChange.d.ts +3 -2
  62. package/dist/Changes/MergeExonsChange.d.ts.map +1 -0
  63. package/dist/Changes/MergeExonsChange.js +9 -13
  64. package/dist/Changes/MergeExonsChange.js.map +1 -1
  65. package/dist/Changes/MergeTranscriptsChange.d.ts +4 -3
  66. package/dist/Changes/MergeTranscriptsChange.d.ts.map +1 -0
  67. package/dist/Changes/MergeTranscriptsChange.js +20 -24
  68. package/dist/Changes/MergeTranscriptsChange.js.map +1 -1
  69. package/dist/Changes/SplitExonChange.d.ts +3 -2
  70. package/dist/Changes/SplitExonChange.d.ts.map +1 -0
  71. package/dist/Changes/SplitExonChange.js +6 -10
  72. package/dist/Changes/SplitExonChange.js.map +1 -1
  73. package/dist/Changes/StrandChange.d.ts +1 -0
  74. package/dist/Changes/StrandChange.d.ts.map +1 -0
  75. package/dist/Changes/StrandChange.js +2 -6
  76. package/dist/Changes/StrandChange.js.map +1 -1
  77. package/dist/Changes/TypeChange.d.ts +1 -0
  78. package/dist/Changes/TypeChange.d.ts.map +1 -0
  79. package/dist/Changes/TypeChange.js +2 -6
  80. package/dist/Changes/TypeChange.js.map +1 -1
  81. package/dist/Changes/UndoMergeExonsChange.d.ts +3 -2
  82. package/dist/Changes/UndoMergeExonsChange.d.ts.map +1 -0
  83. package/dist/Changes/UndoMergeExonsChange.js +4 -8
  84. package/dist/Changes/UndoMergeExonsChange.js.map +1 -1
  85. package/dist/Changes/UndoMergeTranscriptsChange.d.ts +3 -2
  86. package/dist/Changes/UndoMergeTranscriptsChange.d.ts.map +1 -0
  87. package/dist/Changes/UndoMergeTranscriptsChange.js +4 -8
  88. package/dist/Changes/UndoMergeTranscriptsChange.js.map +1 -1
  89. package/dist/Changes/UndoSplitExonChange.d.ts +3 -2
  90. package/dist/Changes/UndoSplitExonChange.d.ts.map +1 -0
  91. package/dist/Changes/UndoSplitExonChange.js +6 -10
  92. package/dist/Changes/UndoSplitExonChange.js.map +1 -1
  93. package/dist/Changes/UserChange.d.ts +1 -0
  94. package/dist/Changes/UserChange.d.ts.map +1 -0
  95. package/dist/Changes/UserChange.js +2 -6
  96. package/dist/Changes/UserChange.js.map +1 -1
  97. package/dist/Changes/index.d.ts +47 -46
  98. package/dist/Changes/index.d.ts.map +1 -0
  99. package/dist/Changes/index.js +70 -74
  100. package/dist/Changes/index.js.map +1 -1
  101. package/dist/Checks/CDSCheck.d.ts +2 -1
  102. package/dist/Checks/CDSCheck.d.ts.map +1 -0
  103. package/dist/Checks/CDSCheck.js +17 -26
  104. package/dist/Checks/CDSCheck.js.map +1 -1
  105. package/dist/Checks/TranscriptCheck.d.ts +2 -1
  106. package/dist/Checks/TranscriptCheck.d.ts.map +1 -0
  107. package/dist/Checks/TranscriptCheck.js +11 -16
  108. package/dist/Checks/TranscriptCheck.js.map +1 -1
  109. package/dist/Checks/index.d.ts +3 -2
  110. package/dist/Checks/index.d.ts.map +1 -0
  111. package/dist/Checks/index.js +2 -5
  112. package/dist/Checks/index.js.map +1 -1
  113. package/dist/Checks/util.d.ts +2 -1
  114. package/dist/Checks/util.d.ts.map +1 -0
  115. package/dist/Checks/util.js +1 -4
  116. package/dist/Checks/util.js.map +1 -1
  117. package/dist/Common/index.d.ts +2 -1
  118. package/dist/Common/index.d.ts.map +1 -0
  119. package/dist/Common/index.js +1 -4
  120. package/dist/Common/index.js.map +1 -1
  121. package/dist/Common/jwtPayload.d.ts +1 -0
  122. package/dist/Common/jwtPayload.d.ts.map +1 -0
  123. package/dist/Common/jwtPayload.js +5 -10
  124. package/dist/Common/jwtPayload.js.map +1 -1
  125. package/dist/GFF3/annotationFeatureToGFF3.d.ts +3 -2
  126. package/dist/GFF3/annotationFeatureToGFF3.d.ts.map +1 -0
  127. package/dist/GFF3/annotationFeatureToGFF3.js +96 -93
  128. package/dist/GFF3/annotationFeatureToGFF3.js.map +1 -1
  129. package/dist/GFF3/annotationFeatureToGFF3.test.d.ts +1 -0
  130. package/dist/GFF3/annotationFeatureToGFF3.test.d.ts.map +1 -0
  131. package/dist/GFF3/annotationFeatureToGFF3.test.js +77 -79
  132. package/dist/GFF3/annotationFeatureToGFF3.test.js.map +1 -1
  133. package/dist/GFF3/gff3ToAnnotationFeature.d.ts +3 -2
  134. package/dist/GFF3/gff3ToAnnotationFeature.d.ts.map +1 -0
  135. package/dist/GFF3/gff3ToAnnotationFeature.js +30 -22
  136. package/dist/GFF3/gff3ToAnnotationFeature.js.map +1 -1
  137. package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts +1 -0
  138. package/dist/GFF3/gff3ToAnnotationFeature.test.d.ts.map +1 -0
  139. package/dist/GFF3/gff3ToAnnotationFeature.test.js +60 -63
  140. package/dist/GFF3/gff3ToAnnotationFeature.test.js.map +1 -1
  141. package/dist/GFF3/gffReservedKeys.d.ts +1 -0
  142. package/dist/GFF3/gffReservedKeys.d.ts.map +1 -0
  143. package/dist/GFF3/gffReservedKeys.js +12 -19
  144. package/dist/GFF3/gffReservedKeys.js.map +1 -1
  145. package/dist/GFF3/index.d.ts +4 -3
  146. package/dist/GFF3/index.d.ts.map +1 -0
  147. package/dist/GFF3/index.js +3 -6
  148. package/dist/GFF3/index.js.map +1 -1
  149. package/dist/GFF3/testUtil.d.ts +2 -1
  150. package/dist/GFF3/testUtil.d.ts.map +1 -0
  151. package/dist/GFF3/testUtil.js +8 -8
  152. package/dist/GFF3/testUtil.js.map +1 -1
  153. package/dist/Messages.d.ts +3 -2
  154. package/dist/Messages.d.ts.map +1 -0
  155. package/dist/Messages.js +1 -2
  156. package/dist/Operations/GetAssembliesOperation.d.ts +2 -3
  157. package/dist/Operations/GetAssembliesOperation.d.ts.map +1 -0
  158. package/dist/Operations/GetAssembliesOperation.js +2 -6
  159. package/dist/Operations/GetAssembliesOperation.js.map +1 -1
  160. package/dist/Operations/GetFeaturesOperation.d.ts +1 -0
  161. package/dist/Operations/GetFeaturesOperation.d.ts.map +1 -0
  162. package/dist/Operations/GetFeaturesOperation.js +2 -6
  163. package/dist/Operations/GetFeaturesOperation.js.map +1 -1
  164. package/dist/Operations/index.d.ts +5 -4
  165. package/dist/Operations/index.d.ts.map +1 -0
  166. package/dist/Operations/index.js +5 -9
  167. package/dist/Operations/index.js.map +1 -1
  168. package/dist/Validations/CoreValidation.d.ts +4 -3
  169. package/dist/Validations/CoreValidation.d.ts.map +1 -0
  170. package/dist/Validations/CoreValidation.js +6 -12
  171. package/dist/Validations/CoreValidation.js.map +1 -1
  172. package/dist/Validations/ParentChildValidation.d.ts +6 -5
  173. package/dist/Validations/ParentChildValidation.d.ts.map +1 -0
  174. package/dist/Validations/ParentChildValidation.js +6 -10
  175. package/dist/Validations/ParentChildValidation.js.map +1 -1
  176. package/dist/Validations/Validation.d.ts +6 -5
  177. package/dist/Validations/Validation.d.ts.map +1 -0
  178. package/dist/Validations/Validation.js +2 -7
  179. package/dist/Validations/Validation.js.map +1 -1
  180. package/dist/Validations/ValidationSet.d.ts +5 -4
  181. package/dist/Validations/ValidationSet.d.ts.map +1 -0
  182. package/dist/Validations/ValidationSet.js +3 -8
  183. package/dist/Validations/ValidationSet.js.map +1 -1
  184. package/dist/Validations/index.d.ts +5 -4
  185. package/dist/Validations/index.d.ts.map +1 -0
  186. package/dist/Validations/index.js +4 -7
  187. package/dist/Validations/index.js.map +1 -1
  188. package/dist/Validations/soSequenceTypes.d.ts +1 -0
  189. package/dist/Validations/soSequenceTypes.d.ts.map +1 -0
  190. package/dist/Validations/soSequenceTypes.js +1 -3
  191. package/dist/Validations/soSequenceTypes.js.map +1 -1
  192. package/dist/index.d.ts +9 -8
  193. package/dist/index.d.ts.map +1 -0
  194. package/dist/index.js +8 -11
  195. package/dist/index.js.map +1 -1
  196. package/dist/tsconfig.tsbuildinfo +1 -1
  197. package/dist/util.d.ts +3 -2
  198. package/dist/util.d.ts.map +1 -0
  199. package/dist/util.js +4 -10
  200. package/dist/util.js.map +1 -1
  201. package/package.json +16 -13
  202. package/src/Changes/AddAssemblyAliasesChange.ts +3 -1
  203. package/src/Changes/AddAssemblyAndFeaturesFromFileChange.ts +38 -16
  204. package/src/Changes/AddAssemblyFromExternalChange.ts +3 -2
  205. package/src/Changes/AddAssemblyFromFileChange.ts +11 -8
  206. package/src/Changes/AddFeatureChange.ts +3 -2
  207. package/src/Changes/AddFeaturesFromFileChange.ts +35 -18
  208. package/src/Changes/AddRefSeqAliasesChange.ts +3 -0
  209. package/src/Changes/DeleteAssemblyChange.ts +1 -0
  210. package/src/Changes/DeleteFeatureChange.ts +3 -3
  211. package/src/Changes/FeatureAttributeChange.ts +1 -1
  212. package/src/Changes/FromFileBaseChange.ts +4 -9
  213. package/src/Changes/LocationEndChange.ts +1 -1
  214. package/src/Changes/LocationStartChange.ts +1 -1
  215. package/src/Changes/MergeExonsChange.ts +4 -4
  216. package/src/Changes/MergeTranscriptsChange.ts +8 -8
  217. package/src/Changes/SplitExonChange.ts +3 -3
  218. package/src/Changes/StrandChange.ts +1 -1
  219. package/src/Changes/TypeChange.ts +1 -1
  220. package/src/Changes/UndoMergeExonsChange.ts +2 -2
  221. package/src/Changes/UndoMergeTranscriptsChange.ts +2 -2
  222. package/src/Changes/UndoSplitExonChange.ts +3 -3
  223. package/src/Changes/index.ts +46 -46
  224. package/src/Checks/CDSCheck.ts +8 -10
  225. package/src/Checks/TranscriptCheck.ts +4 -4
  226. package/src/Checks/index.ts +2 -2
  227. package/src/Checks/util.ts +1 -1
  228. package/src/Common/index.ts +1 -1
  229. package/src/GFF3/annotationFeatureToGFF3.test.ts +3 -3
  230. package/src/GFF3/annotationFeatureToGFF3.ts +105 -99
  231. package/src/GFF3/gff3ToAnnotationFeature.test.ts +3 -3
  232. package/src/GFF3/gff3ToAnnotationFeature.ts +29 -13
  233. package/src/GFF3/index.ts +3 -3
  234. package/src/GFF3/testUtil.ts +5 -1
  235. package/src/Messages.ts +2 -2
  236. package/src/Operations/index.ts +4 -4
  237. package/src/Validations/CoreValidation.ts +4 -4
  238. package/src/Validations/ParentChildValidation.ts +6 -6
  239. package/src/Validations/Validation.ts +5 -5
  240. package/src/Validations/ValidationSet.ts +4 -8
  241. package/src/Validations/index.ts +4 -4
  242. package/src/declare.d.ts +58 -0
  243. package/src/index.ts +8 -8
  244. package/src/util.ts +3 -3
  245. package/test_data/single_feature_mutliple_locations.gff3 +5 -0
  246. package/test_data/single_feature_mutliple_locations.json +76 -0
  247. package/tsconfig.json +6 -4
@@ -1,15 +1,12 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- const tslib_1 = require("tslib");
4
1
  /* eslint-disable @typescript-eslint/no-floating-promises */
5
- const node_fs_1 = require("node:fs");
6
- const node_test_1 = require("node:test");
7
- const gff_1 = require("@gmod/gff");
8
- const chai_1 = require("chai");
9
- const chai_exclude_1 = tslib_1.__importDefault(require("chai-exclude"));
10
- const gff3ToAnnotationFeature_1 = require("./gff3ToAnnotationFeature");
11
- const testUtil_1 = require("./testUtil");
12
- (0, chai_1.use)(chai_exclude_1.default);
2
+ import { readFileSync } from 'node:fs';
3
+ import { describe, it } from 'node:test';
4
+ import { parseStringSync } from '@gmod/gff';
5
+ import { assert, use } from 'chai';
6
+ import chaiExclude from 'chai-exclude';
7
+ import { gff3ToAnnotationFeature } from './gff3ToAnnotationFeature.js';
8
+ import { readAnnotationFeatureSnapshot, testCases } from './testUtil.js';
9
+ use(chaiExclude);
13
10
  function childrenToArray(feature) {
14
11
  const { children } = feature;
15
12
  if (!children) {
@@ -19,16 +16,16 @@ function childrenToArray(feature) {
19
16
  return { ...feature, children: childrenArray };
20
17
  }
21
18
  function compareFeatures(feature1, feature2) {
22
- chai_1.assert.deepEqualExcludingEvery(childrenToArray(feature1), childrenToArray(feature2), '_id');
19
+ assert.deepEqualExcludingEvery(childrenToArray(feature1), childrenToArray(feature2), '_id');
23
20
  }
24
- (0, node_test_1.describe)('Converts GFF3 to AnnotationFeatureSnapshot JSON when', () => {
25
- for (const testCase of testUtil_1.testCases) {
21
+ describe('Converts GFF3 to AnnotationFeatureSnapshot JSON when', () => {
22
+ for (const testCase of testCases) {
26
23
  const { filenameStem, description } = testCase;
27
- (0, node_test_1.it)(description, () => {
28
- const fileText = (0, node_fs_1.readFileSync)(`test_data/${filenameStem}.gff3`, 'utf8');
29
- const gffFeatures = (0, gff_1.parseStringSync)(fileText, { parseSequences: false });
30
- const annotationFeatures = gffFeatures.map((gff3Feature) => (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(gff3Feature));
31
- const annotationFeaturesExpected = JSON.parse((0, node_fs_1.readFileSync)(`test_data/${filenameStem}.json`, 'utf8'));
24
+ it(description, () => {
25
+ const fileText = readFileSync(`test_data/${filenameStem}.gff3`, 'utf8');
26
+ const gffFeatures = parseStringSync(fileText, { parseSequences: false });
27
+ const annotationFeatures = gffFeatures.map((gff3Feature) => gff3ToAnnotationFeature(gff3Feature));
28
+ const annotationFeaturesExpected = JSON.parse(readFileSync(`test_data/${filenameStem}.json`, 'utf8'));
32
29
  for (const [i, annotationFeatureExpected,] of annotationFeaturesExpected.entries()) {
33
30
  const annotationFeature = annotationFeatures[i];
34
31
  compareFeatures(annotationFeature, annotationFeatureExpected);
@@ -37,90 +34,90 @@ function compareFeatures(feature1, feature2) {
37
34
  }
38
35
  });
39
36
  function readFeatureFile(fn) {
40
- const lines = (0, node_fs_1.readFileSync)(fn).toString().split('\n');
37
+ const lines = readFileSync(fn).toString().split('\n');
41
38
  const feature = [];
42
39
  for (const line of lines) {
43
40
  if (!line.startsWith('#')) {
44
41
  feature.push(line);
45
42
  }
46
43
  }
47
- const inGff = (0, gff_1.parseStringSync)(feature.join('\n'));
44
+ const inGff = parseStringSync(feature.join('\n'));
48
45
  return inGff;
49
46
  }
50
47
  const [ex1, , ex2, , ex3, , ex4] = readFeatureFile('test_data/gene_representations.gff3');
51
- (0, node_test_1.describe)('gff3ToAnnotationFeature examples', () => {
52
- (0, node_test_1.it)('Convert one CDS', () => {
53
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(readFeatureFile('test_data/one_cds.gff3')[0]);
54
- const expected = (0, testUtil_1.readAnnotationFeatureSnapshot)('test_data/one_cds.json');
48
+ describe('gff3ToAnnotationFeature examples', () => {
49
+ it('Convert one CDS', () => {
50
+ const actual = gff3ToAnnotationFeature(readFeatureFile('test_data/one_cds.gff3')[0]);
51
+ const expected = readAnnotationFeatureSnapshot('test_data/one_cds.json');
55
52
  compareFeatures(actual, expected);
56
53
  });
57
- (0, node_test_1.it)('Convert example 1', () => {
58
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(ex1);
54
+ it('Convert example 1', () => {
55
+ const actual = gff3ToAnnotationFeature(ex1);
59
56
  const txt = JSON.stringify(actual, null, 2);
60
- chai_1.assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
61
- chai_1.assert.equal(txt.match(/"type": "TF_binding_site"/g)?.length, 1);
62
- const expected = (0, testUtil_1.readAnnotationFeatureSnapshot)('test_data/example01.json');
57
+ assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
58
+ assert.equal(txt.match(/"type": "TF_binding_site"/g)?.length, 1);
59
+ const expected = readAnnotationFeatureSnapshot('test_data/example01.json');
63
60
  compareFeatures(actual, expected);
64
61
  });
65
- (0, node_test_1.it)('Convert example 2', () => {
66
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(ex2);
62
+ it('Convert example 2', () => {
63
+ const actual = gff3ToAnnotationFeature(ex2);
67
64
  const txt = JSON.stringify(actual, null, 2);
68
- chai_1.assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
69
- const expected = (0, testUtil_1.readAnnotationFeatureSnapshot)('test_data/example02.json');
65
+ assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
66
+ const expected = readAnnotationFeatureSnapshot('test_data/example02.json');
70
67
  compareFeatures(actual, expected);
71
68
  });
72
- (0, node_test_1.it)('Convert example 3', () => {
69
+ it('Convert example 3', () => {
73
70
  // NB: In example 3 (and in the other examples) mRNA10003 produces two proteins.
74
71
  // In the other examples the two proteins are identified by sharing the same cds id.
75
72
  // In example 3 instead each cds has a unique id so the two proteins are identified by the order they
76
73
  // appear in the gff.
77
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(ex3);
74
+ const actual = gff3ToAnnotationFeature(ex3);
78
75
  const txt = JSON.stringify(actual, null, 2);
79
- chai_1.assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
76
+ assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
80
77
  // const expected = readAnnotationFeatureSnapshot('test_data/example03.json')
81
78
  // compareFeatures(actual, expected)
82
79
  });
83
- (0, node_test_1.it)('Convert example 4', () => {
80
+ it('Convert example 4', () => {
84
81
  const ft = JSON.stringify(ex4, null, 2);
85
- chai_1.assert.equal(ft.match(/"type": "five_prime_UTR"/g)?.length, 6);
86
- chai_1.assert.equal(ft.match(/"type": "three_prime_UTR"/g)?.length, 3);
87
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(ex4);
82
+ assert.equal(ft.match(/"type": "five_prime_UTR"/g)?.length, 6);
83
+ assert.equal(ft.match(/"type": "three_prime_UTR"/g)?.length, 3);
84
+ const actual = gff3ToAnnotationFeature(ex4);
88
85
  const txt = JSON.stringify(actual, null, 2);
89
- chai_1.assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
90
- chai_1.assert.equal(txt.match(/prime_UTR/g), null);
91
- const expected = (0, testUtil_1.readAnnotationFeatureSnapshot)('test_data/example04.json');
86
+ assert.equal(txt.match(/"type": "CDS"/g)?.length, 4);
87
+ assert.equal(txt.match(/prime_UTR/g), null);
88
+ const expected = readAnnotationFeatureSnapshot('test_data/example04.json');
92
89
  compareFeatures(actual, expected);
93
90
  });
94
- (0, node_test_1.it)('Convert braker gff', () => {
91
+ it('Convert braker gff', () => {
95
92
  const [gffFeature] = readFeatureFile('test_data/braker.gff');
96
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(gffFeature);
93
+ const actual = gff3ToAnnotationFeature(gffFeature);
97
94
  const txt = JSON.stringify(actual, null, 2);
98
- chai_1.assert.equal(txt.match(/intron/g), null);
99
- chai_1.assert.equal(txt.match(/_codon/g), null);
95
+ assert.equal(txt.match(/intron/g), null);
96
+ assert.equal(txt.match(/_codon/g), null);
100
97
  });
101
98
  });
102
- (0, node_test_1.describe)('CDS without exons', () => {
103
- (0, node_test_1.it)('Convert mRNA with CDS but without exon', () => {
99
+ describe('CDS without exons', () => {
100
+ it('Convert mRNA with CDS but without exon', () => {
104
101
  const [gffFeature] = readFeatureFile('test_data/cds_without_exon.gff');
105
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(gffFeature);
106
- const expected = (0, testUtil_1.readAnnotationFeatureSnapshot)('test_data/cds_without_exon.json');
102
+ const actual = gff3ToAnnotationFeature(gffFeature);
103
+ const expected = readAnnotationFeatureSnapshot('test_data/cds_without_exon.json');
107
104
  compareFeatures(actual, expected);
108
105
  });
109
- (0, node_test_1.it)('Convert mRNA with CDS but without exon and spliced UTR', () => {
106
+ it('Convert mRNA with CDS but without exon and spliced UTR', () => {
110
107
  const [gffFeature] = readFeatureFile('test_data/cds_without_exon_spliced_utr.gff');
111
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(gffFeature);
112
- const expected = (0, testUtil_1.readAnnotationFeatureSnapshot)('test_data/cds_without_exon_spliced_utr.json');
108
+ const actual = gff3ToAnnotationFeature(gffFeature);
109
+ const expected = readAnnotationFeatureSnapshot('test_data/cds_without_exon_spliced_utr.json');
113
110
  compareFeatures(actual, expected);
114
111
  });
115
- (0, node_test_1.it)('Convert mRNA with one CDS, without exons non-adjacent UTR', () => {
112
+ it('Convert mRNA with one CDS, without exons non-adjacent UTR', () => {
116
113
  const [gffFeature] = readFeatureFile('test_data/onecds_without_exon_spliced_utr.gff');
117
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(gffFeature);
118
- const expected = (0, testUtil_1.readAnnotationFeatureSnapshot)('test_data/onecds_without_exon_spliced_utr.json');
114
+ const actual = gff3ToAnnotationFeature(gffFeature);
115
+ const expected = readAnnotationFeatureSnapshot('test_data/onecds_without_exon_spliced_utr.json');
119
116
  compareFeatures(actual, expected);
120
117
  });
121
118
  });
122
- (0, node_test_1.describe)('Source and score', () => {
123
- (0, node_test_1.it)('Convert score and source', () => {
119
+ describe('Source and score', () => {
120
+ it('Convert score and source', () => {
124
121
  const gffFeature = [
125
122
  {
126
123
  seq_id: 'chr1',
@@ -140,9 +137,9 @@ const [ex1, , ex2, , ex3, , ex4] = readFeatureFile('test_data/gene_representatio
140
137
  derived_features: [],
141
138
  },
142
139
  ];
143
- const actual = (0, gff3ToAnnotationFeature_1.gff3ToAnnotationFeature)(gffFeature);
144
- chai_1.assert.deepStrictEqual(actual.attributes?.gff_source?.at(0), 'mySource');
145
- chai_1.assert.deepStrictEqual(actual.attributes?.gff_score?.at(0), '0');
140
+ const actual = gff3ToAnnotationFeature(gffFeature);
141
+ assert.deepStrictEqual(actual.attributes?.gff_source?.at(0), 'mySource');
142
+ assert.deepStrictEqual(actual.attributes?.gff_score?.at(0), '0');
146
143
  });
147
144
  });
148
145
  //# sourceMappingURL=gff3ToAnnotationFeature.test.js.map
@@ -1 +1 @@
1
- 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1
+ 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@@ -10,3 +10,4 @@ export declare const gffColumnToInternal: Record<GFFColumn, GFFColumnInternal>;
10
10
  export declare function isGFFColumn(attribute: string): attribute is GFFColumn;
11
11
  export declare const gffInternalToColumn: Record<GFFColumnInternal, GFFColumn>;
12
12
  export declare function isGFFColumnInternal(column: string): column is GFFColumnInternal;
13
+ //# sourceMappingURL=gffReservedKeys.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"gffReservedKeys.d.ts","sourceRoot":"","sources":["../../src/GFF3/gffReservedKeys.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,oBAAoB,GAC5B,IAAI,GACJ,MAAM,GACN,OAAO,GACP,QAAQ,GACR,QAAQ,GACR,KAAK,GACL,cAAc,GACd,MAAM,GACN,QAAQ,GACR,eAAe,GACf,aAAa,CAAA;AAEjB,MAAM,MAAM,oBAAoB,GAC5B,QAAQ,GACR,UAAU,GACV,WAAW,GACX,YAAY,GACZ,YAAY,GACZ,SAAS,GACT,kBAAkB,GAClB,UAAU,GACV,YAAY,GACZ,mBAAmB,GACnB,iBAAiB,CAAA;AAErB,eAAO,MAAM,aAAa,EAAE,MAAM,CAAC,oBAAoB,EAAE,oBAAoB,CAa1E,CAAA;AAEH,wBAAgB,sBAAsB,CACpC,SAAS,EAAE,MAAM,GAChB,SAAS,IAAI,oBAAoB,CAEnC;AAED,eAAO,MAAM,aAAa,EAAE,MAAM,CAAC,oBAAoB,EAAE,oBAAoB,CAa1E,CAAA;AAEH,wBAAgB,sBAAsB,CACpC,SAAS,EAAE,MAAM,GAChB,SAAS,IAAI,oBAAoB,CAEnC;AAED,MAAM,MAAM,SAAS,GAAG,OAAO,GAAG,QAAQ,CAAA;AAC1C,MAAM,MAAM,iBAAiB,GAAG,WAAW,GAAG,YAAY,CAAA;AAC1D,eAAO,MAAM,mBAAmB,EAAE,MAAM,CAAC,SAAS,EAAE,iBAAiB,CAGpE,CAAA;AACD,wBAAgB,WAAW,CAAC,SAAS,EAAE,MAAM,GAAG,SAAS,IAAI,SAAS,CAErE;AACD,eAAO,MAAM,mBAAmB,EAAE,MAAM,CAAC,iBAAiB,EAAE,SAAS,CAGpE,CAAA;AACD,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,MAAM,GACb,MAAM,IAAI,iBAAiB,CAE7B"}
@@ -1,11 +1,4 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.gffInternalToColumn = exports.gffColumnToInternal = exports.internalToGFF = exports.gffToInternal = void 0;
4
- exports.isGFFReservedAttribute = isGFFReservedAttribute;
5
- exports.isGFFInternalAttribute = isGFFInternalAttribute;
6
- exports.isGFFColumn = isGFFColumn;
7
- exports.isGFFColumnInternal = isGFFColumnInternal;
8
- exports.gffToInternal = {
1
+ export const gffToInternal = {
9
2
  ID: 'gff_id',
10
3
  Name: 'gff_name',
11
4
  Alias: 'gff_alias',
@@ -18,10 +11,10 @@ exports.gffToInternal = {
18
11
  Ontology_term: 'gff_ontology_term',
19
12
  Is_circular: 'gff_is_circular',
20
13
  };
21
- function isGFFReservedAttribute(attribute) {
22
- return attribute in exports.gffToInternal;
14
+ export function isGFFReservedAttribute(attribute) {
15
+ return attribute in gffToInternal;
23
16
  }
24
- exports.internalToGFF = {
17
+ export const internalToGFF = {
25
18
  gff_id: 'ID',
26
19
  gff_name: 'Name',
27
20
  gff_alias: 'Alias',
@@ -34,21 +27,21 @@ exports.internalToGFF = {
34
27
  gff_ontology_term: 'Ontology_term',
35
28
  gff_is_circular: 'Is_circular',
36
29
  };
37
- function isGFFInternalAttribute(attribute) {
38
- return attribute in exports.internalToGFF;
30
+ export function isGFFInternalAttribute(attribute) {
31
+ return attribute in internalToGFF;
39
32
  }
40
- exports.gffColumnToInternal = {
33
+ export const gffColumnToInternal = {
41
34
  score: 'gff_score',
42
35
  source: 'gff_source',
43
36
  };
44
- function isGFFColumn(attribute) {
45
- return attribute in exports.gffColumnToInternal;
37
+ export function isGFFColumn(attribute) {
38
+ return attribute in gffColumnToInternal;
46
39
  }
47
- exports.gffInternalToColumn = {
40
+ export const gffInternalToColumn = {
48
41
  gff_score: 'score',
49
42
  gff_source: 'source',
50
43
  };
51
- function isGFFColumnInternal(column) {
52
- return column in exports.gffInternalToColumn;
44
+ export function isGFFColumnInternal(column) {
45
+ return column in gffInternalToColumn;
53
46
  }
54
47
  //# sourceMappingURL=gffReservedKeys.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"gffReservedKeys.js","sourceRoot":"","sources":["../../src/GFF3/gffReservedKeys.ts"],"names":[],"mappings":";;;AAyCA,wDAIC;AAiBD,wDAIC;AAQD,kCAEC;AAKD,kDAIC;AA3DY,QAAA,aAAa,GACxB;IACE,EAAE,EAAE,QAAQ;IACZ,IAAI,EAAE,UAAU;IAChB,KAAK,EAAE,WAAW;IAClB,MAAM,EAAE,YAAY;IACpB,MAAM,EAAE,YAAY;IACpB,GAAG,EAAE,SAAS;IACd,YAAY,EAAE,kBAAkB;IAChC,IAAI,EAAE,UAAU;IAChB,MAAM,EAAE,YAAY;IACpB,aAAa,EAAE,mBAAmB;IAClC,WAAW,EAAE,iBAAiB;CAC/B,CAAA;AAEH,SAAgB,sBAAsB,CACpC,SAAiB;IAEjB,OAAO,SAAS,IAAI,qBAAa,CAAA;AACnC,CAAC;AAEY,QAAA,aAAa,GACxB;IACE,MAAM,EAAE,IAAI;IACZ,QAAQ,EAAE,MAAM;IAChB,SAAS,EAAE,OAAO;IAClB,UAAU,EAAE,QAAQ;IACpB,UAAU,EAAE,QAAQ;IACpB,OAAO,EAAE,KAAK;IACd,gBAAgB,EAAE,cAAc;IAChC,QAAQ,EAAE,MAAM;IAChB,UAAU,EAAE,QAAQ;IACpB,iBAAiB,EAAE,eAAe;IAClC,eAAe,EAAE,aAAa;CAC/B,CAAA;AAEH,SAAgB,sBAAsB,CACpC,SAAiB;IAEjB,OAAO,SAAS,IAAI,qBAAa,CAAA;AACnC,CAAC;AAIY,QAAA,mBAAmB,GAAyC;IACvE,KAAK,EAAE,WAAW;IAClB,MAAM,EAAE,YAAY;CACrB,CAAA;AACD,SAAgB,WAAW,CAAC,SAAiB;IAC3C,OAAO,SAAS,IAAI,2BAAmB,CAAA;AACzC,CAAC;AACY,QAAA,mBAAmB,GAAyC;IACvE,SAAS,EAAE,OAAO;IAClB,UAAU,EAAE,QAAQ;CACrB,CAAA;AACD,SAAgB,mBAAmB,CACjC,MAAc;IAEd,OAAO,MAAM,IAAI,2BAAmB,CAAA;AACtC,CAAC"}
1
+ {"version":3,"file":"gffReservedKeys.js","sourceRoot":"","sources":["../../src/GFF3/gffReservedKeys.ts"],"names":[],"mappings":"AA0BA,MAAM,CAAC,MAAM,aAAa,GACxB;IACE,EAAE,EAAE,QAAQ;IACZ,IAAI,EAAE,UAAU;IAChB,KAAK,EAAE,WAAW;IAClB,MAAM,EAAE,YAAY;IACpB,MAAM,EAAE,YAAY;IACpB,GAAG,EAAE,SAAS;IACd,YAAY,EAAE,kBAAkB;IAChC,IAAI,EAAE,UAAU;IAChB,MAAM,EAAE,YAAY;IACpB,aAAa,EAAE,mBAAmB;IAClC,WAAW,EAAE,iBAAiB;CAC/B,CAAA;AAEH,MAAM,UAAU,sBAAsB,CACpC,SAAiB;IAEjB,OAAO,SAAS,IAAI,aAAa,CAAA;AACnC,CAAC;AAED,MAAM,CAAC,MAAM,aAAa,GACxB;IACE,MAAM,EAAE,IAAI;IACZ,QAAQ,EAAE,MAAM;IAChB,SAAS,EAAE,OAAO;IAClB,UAAU,EAAE,QAAQ;IACpB,UAAU,EAAE,QAAQ;IACpB,OAAO,EAAE,KAAK;IACd,gBAAgB,EAAE,cAAc;IAChC,QAAQ,EAAE,MAAM;IAChB,UAAU,EAAE,QAAQ;IACpB,iBAAiB,EAAE,eAAe;IAClC,eAAe,EAAE,aAAa;CAC/B,CAAA;AAEH,MAAM,UAAU,sBAAsB,CACpC,SAAiB;IAEjB,OAAO,SAAS,IAAI,aAAa,CAAA;AACnC,CAAC;AAID,MAAM,CAAC,MAAM,mBAAmB,GAAyC;IACvE,KAAK,EAAE,WAAW;IAClB,MAAM,EAAE,YAAY;CACrB,CAAA;AACD,MAAM,UAAU,WAAW,CAAC,SAAiB;IAC3C,OAAO,SAAS,IAAI,mBAAmB,CAAA;AACzC,CAAC;AACD,MAAM,CAAC,MAAM,mBAAmB,GAAyC;IACvE,SAAS,EAAE,OAAO;IAClB,UAAU,EAAE,QAAQ;CACrB,CAAA;AACD,MAAM,UAAU,mBAAmB,CACjC,MAAc;IAEd,OAAO,MAAM,IAAI,mBAAmB,CAAA;AACtC,CAAC"}
@@ -1,3 +1,4 @@
1
- export * from './annotationFeatureToGFF3';
2
- export * from './gffReservedKeys';
3
- export * from './gff3ToAnnotationFeature';
1
+ export * from './annotationFeatureToGFF3.js';
2
+ export * from './gffReservedKeys.js';
3
+ export * from './gff3ToAnnotationFeature.js';
4
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/GFF3/index.ts"],"names":[],"mappings":"AAAA,cAAc,8BAA8B,CAAA;AAC5C,cAAc,sBAAsB,CAAA;AACpC,cAAc,8BAA8B,CAAA"}
@@ -1,7 +1,4 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- const tslib_1 = require("tslib");
4
- tslib_1.__exportStar(require("./annotationFeatureToGFF3"), exports);
5
- tslib_1.__exportStar(require("./gffReservedKeys"), exports);
6
- tslib_1.__exportStar(require("./gff3ToAnnotationFeature"), exports);
1
+ export * from './annotationFeatureToGFF3.js';
2
+ export * from './gffReservedKeys.js';
3
+ export * from './gff3ToAnnotationFeature.js';
7
4
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/GFF3/index.ts"],"names":[],"mappings":";;;AAAA,oEAAyC;AACzC,4DAAiC;AACjC,oEAAyC"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/GFF3/index.ts"],"names":[],"mappings":"AAAA,cAAc,8BAA8B,CAAA;AAC5C,cAAc,sBAAsB,CAAA;AACpC,cAAc,8BAA8B,CAAA"}
@@ -1,6 +1,7 @@
1
- import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
1
+ import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
2
2
  export declare function readAnnotationFeatureSnapshot(fn: string): AnnotationFeatureSnapshot;
3
3
  export declare const testCases: {
4
4
  filenameStem: string;
5
5
  description: string;
6
6
  }[];
7
+ //# sourceMappingURL=testUtil.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"testUtil.d.ts","sourceRoot":"","sources":["../../src/GFF3/testUtil.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAEvE,wBAAgB,6BAA6B,CAC3C,EAAE,EAAE,MAAM,GACT,yBAAyB,CAG3B;AAED,eAAO,MAAM,SAAS,EAAE;IAAE,YAAY,EAAE,MAAM,CAAC;IAAC,WAAW,EAAE,MAAM,CAAA;CAAE,EAiBpE,CAAA"}
@@ -1,13 +1,9 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.testCases = void 0;
4
- exports.readAnnotationFeatureSnapshot = readAnnotationFeatureSnapshot;
5
- const node_fs_1 = require("node:fs");
6
- function readAnnotationFeatureSnapshot(fn) {
7
- const lines = (0, node_fs_1.readFileSync)(fn).toString();
1
+ import { readFileSync } from 'node:fs';
2
+ export function readAnnotationFeatureSnapshot(fn) {
3
+ const lines = readFileSync(fn).toString();
8
4
  return JSON.parse(lines);
9
5
  }
10
- exports.testCases = [
6
+ export const testCases = [
11
7
  {
12
8
  filenameStem: 'single_feature_no_children',
13
9
  description: 'there is a single feature with no children',
@@ -20,5 +16,9 @@ exports.testCases = [
20
16
  filenameStem: 'gene_with_two_cds',
21
17
  description: 'Gene with two CDS',
22
18
  },
19
+ {
20
+ filenameStem: 'single_feature_mutliple_locations',
21
+ description: 'A single top-level feature has multiple locations',
22
+ },
23
23
  ];
24
24
  //# sourceMappingURL=testUtil.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"testUtil.js","sourceRoot":"","sources":["../../src/GFF3/testUtil.ts"],"names":[],"mappings":";;;AAIA,sEAKC;AATD,qCAAsC;AAItC,SAAgB,6BAA6B,CAC3C,EAAU;IAEV,MAAM,KAAK,GAAG,IAAA,sBAAY,EAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAA;IACzC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,CAA8B,CAAA;AACvD,CAAC;AAEY,QAAA,SAAS,GAAoD;IACxE;QACE,YAAY,EAAE,4BAA4B;QAC1C,WAAW,EAAE,4CAA4C;KAC1D;IACD;QACE,YAAY,EAAE,6BAA6B;QAC3C,WAAW,EAAE,6CAA6C;KAC3D;IACD;QACE,YAAY,EAAE,mBAAmB;QACjC,WAAW,EAAE,mBAAmB;KACjC;CACF,CAAA"}
1
+ {"version":3,"file":"testUtil.js","sourceRoot":"","sources":["../../src/GFF3/testUtil.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAA;AAItC,MAAM,UAAU,6BAA6B,CAC3C,EAAU;IAEV,MAAM,KAAK,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAA;IACzC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,CAA8B,CAAA;AACvD,CAAC;AAED,MAAM,CAAC,MAAM,SAAS,GAAoD;IACxE;QACE,YAAY,EAAE,4BAA4B;QAC1C,WAAW,EAAE,4CAA4C;KAC1D;IACD;QACE,YAAY,EAAE,6BAA6B;QAC3C,WAAW,EAAE,6CAA6C;KAC3D;IACD;QACE,YAAY,EAAE,mBAAmB;QACjC,WAAW,EAAE,mBAAmB;KACjC;IACD;QACE,YAAY,EAAE,mCAAmC;QACjD,WAAW,EAAE,mDAAmD;KACjE;CACF,CAAA"}
@@ -1,5 +1,5 @@
1
- import { type SerializedChange } from '@apollo-annotation/common';
2
- import { type CheckResultSnapshot } from '@apollo-annotation/mst';
1
+ import type { SerializedChange } from '@apollo-annotation/common';
2
+ import type { CheckResultSnapshot } from '@apollo-annotation/mst';
3
3
  interface BaseMessage {
4
4
  channel: string;
5
5
  userName: string;
@@ -26,3 +26,4 @@ export interface RequestUserInformationMessage extends BaseMessage {
26
26
  readonly reqType: 'CURRENT_LOCATION';
27
27
  }
28
28
  export {};
29
+ //# sourceMappingURL=Messages.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"Messages.d.ts","sourceRoot":"","sources":["../src/Messages.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AACjE,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,wBAAwB,CAAA;AAEjE,UAAU,WAAW;IACnB,OAAO,EAAE,MAAM,CAAA;IACf,QAAQ,EAAE,MAAM,CAAA;IAChB,aAAa,EAAE,MAAM,CAAA;CACtB;AAED,MAAM,WAAW,aAAc,SAAQ,WAAW;IAChD,UAAU,EAAE,gBAAgB,CAAA;IAC5B,cAAc,EAAE,MAAM,CAAA;CACvB;AACD,MAAM,WAAW,iBAAkB,SAAQ,WAAW;IACpD,WAAW,EAAE,mBAAmB,CAAA;IAChC,OAAO,CAAC,EAAE,OAAO,CAAA;CAClB;AAED,MAAM,WAAW,YAAY;IAC3B,UAAU,EAAE,MAAM,CAAA;IAClB,MAAM,EAAE,MAAM,CAAA;IACd,KAAK,EAAE,MAAM,CAAA;IACb,GAAG,EAAE,MAAM,CAAA;CACZ;AAED,MAAM,WAAW,mBAAoB,SAAQ,WAAW;IACtD,SAAS,EAAE,YAAY,EAAE,CAAA;CAC1B;AAED,MAAM,WAAW,6BAA8B,SAAQ,WAAW;IAChE,QAAQ,CAAC,OAAO,EAAE,kBAAkB,CAAA;CACrC"}
package/dist/Messages.js CHANGED
@@ -1,3 +1,2 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
1
+ export {};
3
2
  //# sourceMappingURL=Messages.js.map
@@ -5,9 +5,8 @@ interface SerializedGetAssembliesOperation extends SerializedOperation {
5
5
  export declare class GetAssembliesOperation extends Operation {
6
6
  typeName: "GetAssembliesOperation";
7
7
  toJSON(): SerializedGetAssembliesOperation;
8
- executeOnServer(backend: ServerDataStore): Promise<(import("mongoose").Document<unknown, any, import("@apollo-annotation/schemas").AssemblyDocument> & Omit<import("@apollo-annotation/schemas").Assembly & Document & {
9
- _id: import("mongoose").Types.ObjectId;
10
- }, never>)[]>;
8
+ executeOnServer(backend: ServerDataStore): Promise<any[]>;
11
9
  executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
12
10
  }
13
11
  export {};
12
+ //# sourceMappingURL=GetAssembliesOperation.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"GetAssembliesOperation.d.ts","sourceRoot":"","sources":["../../src/Operations/GetAssembliesOperation.ts"],"names":[],"mappings":"AACA,OAAO,EACL,KAAK,kBAAkB,EACvB,SAAS,EACT,KAAK,mBAAmB,EACxB,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAElC,UAAU,gCAAiC,SAAQ,mBAAmB;IACpE,QAAQ,EAAE,wBAAwB,CAAA;CACnC;AAED,qBAAa,sBAAuB,SAAQ,SAAS;IACnD,QAAQ,2BAAoC;IAE5C,MAAM,IAAI,gCAAgC;IAK1C,eAAe,CAAC,OAAO,EAAE,eAAe;IAIlC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;CAGtD"}
@@ -1,9 +1,6 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.GetAssembliesOperation = void 0;
4
1
  /* eslint-disable @typescript-eslint/require-await */
5
- const common_1 = require("@apollo-annotation/common");
6
- class GetAssembliesOperation extends common_1.Operation {
2
+ import { Operation, } from '@apollo-annotation/common';
3
+ export class GetAssembliesOperation extends Operation {
7
4
  typeName = 'GetAssembliesOperation';
8
5
  toJSON() {
9
6
  const { typeName } = this;
@@ -16,5 +13,4 @@ class GetAssembliesOperation extends common_1.Operation {
16
13
  throw new Error('executeOnLocalGFF3 not implemented');
17
14
  }
18
15
  }
19
- exports.GetAssembliesOperation = GetAssembliesOperation;
20
16
  //# sourceMappingURL=GetAssembliesOperation.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"GetAssembliesOperation.js","sourceRoot":"","sources":["../../src/Operations/GetAssembliesOperation.ts"],"names":[],"mappings":";;;AAAA,qDAAqD;AACrD,sDAKkC;AAMlC,MAAa,sBAAuB,SAAQ,kBAAS;IACnD,QAAQ,GAAG,wBAAiC,CAAA;IAE5C,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACzB,OAAO,EAAE,QAAQ,EAAE,CAAA;IACrB,CAAC;IAED,eAAe,CAAC,OAAwB;QACtC,OAAO,OAAO,CAAC,aAAa,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;IACzD,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;CACF;AAfD,wDAeC"}
1
+ {"version":3,"file":"GetAssembliesOperation.js","sourceRoot":"","sources":["../../src/Operations/GetAssembliesOperation.ts"],"names":[],"mappings":"AAAA,qDAAqD;AACrD,OAAO,EAEL,SAAS,GAGV,MAAM,2BAA2B,CAAA;AAMlC,MAAM,OAAO,sBAAuB,SAAQ,SAAS;IACnD,QAAQ,GAAG,wBAAiC,CAAA;IAE5C,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACzB,OAAO,EAAE,QAAQ,EAAE,CAAA;IACrB,CAAC;IAED,eAAe,CAAC,OAAwB;QACtC,OAAO,OAAO,CAAC,aAAa,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;IACzD,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;CACF"}
@@ -24,3 +24,4 @@ export declare class GetFeaturesOperation extends Operation {
24
24
  executeOnLocalGFF3(_backend: LocalGFF3DataStore): Promise<void>;
25
25
  }
26
26
  export {};
27
+ //# sourceMappingURL=GetFeaturesOperation.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"GetFeaturesOperation.d.ts","sourceRoot":"","sources":["../../src/Operations/GetFeaturesOperation.ts"],"names":[],"mappings":"AACA,OAAO,EACL,KAAK,kBAAkB,EACvB,SAAS,EACT,KAAK,gBAAgB,EACrB,KAAK,mBAAmB,EACxB,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAElC,UAAU,8BAA+B,SAAQ,mBAAmB;IAClE,QAAQ,EAAE,sBAAsB,CAAA;IAChC,MAAM,EAAE,MAAM,CAAA;IACd,KAAK,EAAE,MAAM,CAAA;IACb,GAAG,EAAE,MAAM,CAAA;CACZ;AAED,qBAAa,oBAAqB,SAAQ,SAAS;IACjD,QAAQ,yBAAkC;IAC1C,MAAM,EAAE,MAAM,CAAA;IACd,KAAK,EAAE,MAAM,CAAA;IACb,GAAG,EAAE,MAAM,CAAA;gBAGT,IAAI,EAAE,8BAA8B,EACpC,OAAO,CAAC,EAAE,gBAAgB;IAQ5B,MAAM,IAAI,8BAA8B;IAKxC;;;;;OAKG;IACH,eAAe,CAAC,OAAO,EAAE,eAAe;;;IAWlC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;CAGtD"}
@@ -1,9 +1,6 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.GetFeaturesOperation = void 0;
4
1
  /* eslint-disable @typescript-eslint/require-await */
5
- const common_1 = require("@apollo-annotation/common");
6
- class GetFeaturesOperation extends common_1.Operation {
2
+ import { Operation, } from '@apollo-annotation/common';
3
+ export class GetFeaturesOperation extends Operation {
7
4
  typeName = 'GetFeaturesOperation';
8
5
  refSeq;
9
6
  start;
@@ -38,5 +35,4 @@ class GetFeaturesOperation extends common_1.Operation {
38
35
  throw new Error('executeOnLocalGFF3 not implemented');
39
36
  }
40
37
  }
41
- exports.GetFeaturesOperation = GetFeaturesOperation;
42
38
  //# sourceMappingURL=GetFeaturesOperation.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"GetFeaturesOperation.js","sourceRoot":"","sources":["../../src/Operations/GetFeaturesOperation.ts"],"names":[],"mappings":";;;AAAA,qDAAqD;AACrD,sDAMkC;AASlC,MAAa,oBAAqB,SAAQ,kBAAS;IACjD,QAAQ,GAAG,sBAA+B,CAAA;IAC1C,MAAM,CAAQ;IACd,KAAK,CAAQ;IACb,GAAG,CAAQ;IAEX,YACE,IAAoC,EACpC,OAA0B;QAE1B,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,CAAA;QACzB,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,CAAA;QACvB,IAAI,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAA;IACrB,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,CAAA;IACzC,CAAC;IAED;;;;;OAKG;IACH,eAAe,CAAC,OAAwB;QACtC,OAAO,OAAO,CAAC,YAAY;aACxB,IAAI,CAAC;YACJ,MAAM,EAAE,IAAI,CAAC,MAAM;YACnB,GAAG,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,GAAG,EAAE;YACvB,GAAG,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,KAAK,EAAE;YACzB,MAAM,EAAE,CAAC;SACV,CAAC;aACD,IAAI,EAAE,CAAA;IACX,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;CACF;AAzCD,oDAyCC"}
1
+ {"version":3,"file":"GetFeaturesOperation.js","sourceRoot":"","sources":["../../src/Operations/GetFeaturesOperation.ts"],"names":[],"mappings":"AAAA,qDAAqD;AACrD,OAAO,EAEL,SAAS,GAIV,MAAM,2BAA2B,CAAA;AASlC,MAAM,OAAO,oBAAqB,SAAQ,SAAS;IACjD,QAAQ,GAAG,sBAA+B,CAAA;IAC1C,MAAM,CAAQ;IACd,KAAK,CAAQ;IACb,GAAG,CAAQ;IAEX,YACE,IAAoC,EACpC,OAA0B;QAE1B,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,CAAA;QACzB,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,CAAA;QACvB,IAAI,CAAC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAA;IACrB,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,CAAA;IACzC,CAAC;IAED;;;;;OAKG;IACH,eAAe,CAAC,OAAwB;QACtC,OAAO,OAAO,CAAC,YAAY;aACxB,IAAI,CAAC;YACJ,MAAM,EAAE,IAAI,CAAC,MAAM;YACnB,GAAG,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,GAAG,EAAE;YACvB,GAAG,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,KAAK,EAAE;YACzB,MAAM,EAAE,CAAC;SACV,CAAC;aACD,IAAI,EAAE,CAAA;IACX,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;CACF"}
@@ -1,8 +1,9 @@
1
- import { GetAssembliesOperation } from './GetAssembliesOperation';
2
- import { GetFeaturesOperation } from './GetFeaturesOperation';
1
+ import { GetAssembliesOperation } from './GetAssembliesOperation.js';
2
+ import { GetFeaturesOperation } from './GetFeaturesOperation.js';
3
3
  export declare const operations: {
4
4
  GetAssembliesOperation: typeof GetAssembliesOperation;
5
5
  GetFeaturesOperation: typeof GetFeaturesOperation;
6
6
  };
7
- export * from './GetAssembliesOperation';
8
- export * from './GetFeaturesOperation';
7
+ export * from './GetAssembliesOperation.js';
8
+ export * from './GetFeaturesOperation.js';
9
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/Operations/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AACpE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAEhE,eAAO,MAAM,UAAU;;;CAAmD,CAAA;AAC1E,cAAc,6BAA6B,CAAA;AAC3C,cAAc,2BAA2B,CAAA"}
@@ -1,10 +1,6 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.operations = void 0;
4
- const tslib_1 = require("tslib");
5
- const GetAssembliesOperation_1 = require("./GetAssembliesOperation");
6
- const GetFeaturesOperation_1 = require("./GetFeaturesOperation");
7
- exports.operations = { GetAssembliesOperation: GetAssembliesOperation_1.GetAssembliesOperation, GetFeaturesOperation: GetFeaturesOperation_1.GetFeaturesOperation };
8
- tslib_1.__exportStar(require("./GetAssembliesOperation"), exports);
9
- tslib_1.__exportStar(require("./GetFeaturesOperation"), exports);
1
+ import { GetAssembliesOperation } from './GetAssembliesOperation.js';
2
+ import { GetFeaturesOperation } from './GetFeaturesOperation.js';
3
+ export const operations = { GetAssembliesOperation, GetFeaturesOperation };
4
+ export * from './GetAssembliesOperation.js';
5
+ export * from './GetFeaturesOperation.js';
10
6
  //# sourceMappingURL=index.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/Operations/index.ts"],"names":[],"mappings":";;;;AAAA,qEAAiE;AACjE,iEAA6D;AAEhD,QAAA,UAAU,GAAG,EAAE,sBAAsB,EAAtB,+CAAsB,EAAE,oBAAoB,EAApB,2CAAoB,EAAE,CAAA;AAC1E,mEAAwC;AACxC,iEAAsC"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/Operations/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAA;AACpE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAEhE,MAAM,CAAC,MAAM,UAAU,GAAG,EAAE,sBAAsB,EAAE,oBAAoB,EAAE,CAAA;AAC1E,cAAc,6BAA6B,CAAA;AAC3C,cAAc,2BAA2B,CAAA"}
@@ -1,6 +1,6 @@
1
- import { type Change } from '@apollo-annotation/common';
2
- import { type TypeChange } from '../Changes';
3
- import { Validation } from './Validation';
1
+ import type { Change } from '@apollo-annotation/common';
2
+ import type { TypeChange } from '../Changes/index.js';
3
+ import { Validation } from './Validation.js';
4
4
  export declare function isTypeChange(thing: Change): thing is TypeChange;
5
5
  export declare class CoreValidation extends Validation {
6
6
  name: "Core";
@@ -15,3 +15,4 @@ export declare class CoreValidation extends Validation {
15
15
  }>;
16
16
  possibleValues(key: string): Promise<string[] | undefined>;
17
17
  }
18
+ //# sourceMappingURL=CoreValidation.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"CoreValidation.d.ts","sourceRoot":"","sources":["../../src/Validations/CoreValidation.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,2BAA2B,CAAA;AAEvD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AAErD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAA;AAG5C,wBAAgB,YAAY,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,IAAI,UAAU,CAE/D;AAED,qBAAa,cAAe,SAAQ,UAAU;IAC5C,IAAI,SAAkB;IAEhB,mBAAmB,CAAC,MAAM,EAAE,MAAM;;;;;;;;;IAgBlC,cAAc,CAAC,GAAG,EAAE,MAAM;CAMjC"}
@@ -1,19 +1,14 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.CoreValidation = void 0;
4
- exports.isTypeChange = isTypeChange;
5
- const tslib_1 = require("tslib");
6
- const Validation_1 = require("./Validation");
7
- const soSequenceTypes_1 = tslib_1.__importDefault(require("./soSequenceTypes"));
8
- function isTypeChange(thing) {
1
+ import { Validation } from './Validation.js';
2
+ import soSequenceTypes from './soSequenceTypes.js';
3
+ export function isTypeChange(thing) {
9
4
  return 'oldType' in thing && 'newType' in thing;
10
5
  }
11
- class CoreValidation extends Validation_1.Validation {
6
+ export class CoreValidation extends Validation {
12
7
  name = 'Core';
13
8
  async frontendPreValidate(change) {
14
9
  if (isTypeChange(change)) {
15
10
  for (const subChange of change.changes) {
16
- if (!soSequenceTypes_1.default.includes(subChange.newType)) {
11
+ if (!soSequenceTypes.includes(subChange.newType)) {
17
12
  return {
18
13
  validationName: this.name,
19
14
  error: {
@@ -27,10 +22,9 @@ class CoreValidation extends Validation_1.Validation {
27
22
  }
28
23
  async possibleValues(key) {
29
24
  if (key === 'type') {
30
- return soSequenceTypes_1.default;
25
+ return soSequenceTypes;
31
26
  }
32
27
  return;
33
28
  }
34
29
  }
35
- exports.CoreValidation = CoreValidation;
36
30
  //# sourceMappingURL=CoreValidation.js.map
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"CoreValidation.js","sourceRoot":"","sources":["../../src/Validations/CoreValidation.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAA;AAC5C,OAAO,eAAe,MAAM,sBAAsB,CAAA;AAElD,MAAM,UAAU,YAAY,CAAC,KAAa;IACxC,OAAO,SAAS,IAAI,KAAK,IAAI,SAAS,IAAI,KAAK,CAAA;AACjD,CAAC;AAED,MAAM,OAAO,cAAe,SAAQ,UAAU;IAC5C,IAAI,GAAG,MAAe,CAAA;IAEtB,KAAK,CAAC,mBAAmB,CAAC,MAAc;QACtC,IAAI,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC;YACzB,KAAK,MAAM,SAAS,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;gBACvC,IAAI,CAAC,eAAe,CAAC,QAAQ,CAAC,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC;oBACjD,OAAO;wBACL,cAAc,EAAE,IAAI,CAAC,IAAI;wBACzB,KAAK,EAAE;4BACL,OAAO,EAAE,IAAI,SAAS,CAAC,OAAO,2CAA2C;yBAC1E;qBACF,CAAA;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QACD,OAAO,EAAE,cAAc,EAAE,IAAI,CAAC,IAAI,EAAE,CAAA;IACtC,CAAC;IAED,KAAK,CAAC,cAAc,CAAC,GAAW;QAC9B,IAAI,GAAG,KAAK,MAAM,EAAE,CAAC;YACnB,OAAO,eAAe,CAAA;QACxB,CAAC;QACD,OAAM;IACR,CAAC;CACF"}