@apollo-annotation/shared 0.3.11 → 0.3.12

package/dist/Changes/DeleteAssemblyChange.js

@@ -1,13 +1,11 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.DeleteAssemblyChange = void 0;
+/* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-return */
 /* eslint-disable @typescript-eslint/require-await */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-call */
-const common_1 = require("@apollo-annotation/common");
-const util_1 = require("@jbrowse/core/util");
-class DeleteAssemblyChange extends common_1.AssemblySpecificChange {
+import { AssemblySpecificChange, } from '@apollo-annotation/common';
+import { getSession } from '@jbrowse/core/util';
+export class DeleteAssemblyChange extends AssemblySpecificChange {
     typeName = 'DeleteAssemblyChange';
     get notification() {
         return `Assembly "${this.assembly}" deleted successfully.`;
@@ -54,7 +52,7 @@ class DeleteAssemblyChange extends common_1.AssemblySpecificChange {
         if (!dataStore) {
             throw new Error('No data store');
         }
-        const session = (0, util_1.getSession)(dataStore);
+        const session = getSession(dataStore);
         // If assemblyId is not present in client data store
         if (dataStore.assemblies.has(assembly)) {
             dataStore.deleteAssembly(assembly);
@@ -68,5 +66,4 @@ class DeleteAssemblyChange extends common_1.AssemblySpecificChange {
         return new DeleteAssemblyChange({ typeName: 'DeleteAssemblyChange', assembly }, { logger });
     }
 }
-exports.DeleteAssemblyChange = DeleteAssemblyChange;
 //# sourceMappingURL=DeleteAssemblyChange.js.map

package/dist/Changes/DeleteAssemblyChange.js.map

@@ -1 +1 @@
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+{"version":3,"file":"DeleteAssemblyChange.js","sourceRoot":"","sources":["../../src/Changes/DeleteAssemblyChange.ts"],"names":[],"mappings":"AAAA,4DAA4D;AAC5D,wDAAwD;AACxD,qDAAqD;AACrD,gEAAgE;AAChE,sDAAsD;AACtD,OAAO,EACL,sBAAsB,GAKvB,MAAM,2BAA2B,CAAA;AAClC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAM/C,MAAM,OAAO,oBAAqB,SAAQ,sBAAsB;IAC9D,QAAQ,GAAG,sBAA+B,CAAA;IAE1C,IAAI,YAAY;QACd,OAAO,aAAa,IAAI,CAAC,QAAQ,yBAAyB,CAAA;IAC5D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACnC,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;IAC/B,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EACJ,aAAa,EACb,YAAY,EACZ,gBAAgB,EAChB,WAAW,EACX,OAAO,GACR,GAAG,OAAO,CAAA;QACX,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAEjC,MAAM,WAAW,GAAG,MAAM,aAAa;aACpC,QAAQ,CAAC,QAAQ,CAAC;aAClB,OAAO,CAAC,OAAO,CAAC;aAChB,IAAI,EAAE,CAAA;QACT,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,MAAM,MAAM,GAAG,gCAAgC,QAAQ,aAAa,CAAA;YACpE,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;YACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;QACzB,CAAC;QAED,iGAAiG;QAEjG,cAAc;QACd,MAAM,OAAO,GAAG,MAAM,WAAW,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QAC3D,MAAM,SAAS,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAA;QAErD,8BAA8B;QAC9B,MAAM,gBAAgB,CAAC,UAAU,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QAE/D,0BAA0B;QAC1B,MAAM,YAAY,CAAC,UAAU,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QAE3D,8BAA8B;QAC9B,MAAM,WAAW,CAAC,UAAU,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;QACjD,MAAM,aAAa,CAAC,iBAAiB,CAAC,QAAQ,CAAC,CAAC,IAAI,EAAE,CAAA;QAEtD,MAAM,CAAC,KAAK,EAAE,CAAC,aAAa,QAAQ,0BAA0B,CAAC,CAAA;IACjE,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACzB,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,MAAM,OAAO,GAAG,UAAU,CAAC,SAAS,CAAC,CAAA;QACrC,oDAAoD;QACpD,IAAI,SAAS,CAAC,UAAU,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC;YACvC,SAAS,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAA;QACpC,CAAC;QACD,MAAM,OAAO,CAAC,cAAc,EAAE,CAAC,QAAQ,CAAC,CAAA;QACxC,0DAA0D;QAC1D,MAAM,OAAO,CAAC,qBAAqB,EAAE,CAAC,QAAQ,CAAC,CAAA;IACjD,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACjC,OAAO,IAAI,oBAAoB,CAC7B,EAAE,QAAQ,EAAE,sBAAsB,EAAE,QAAQ,EAAE,EAC9C,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF"}

package/dist/Changes/DeleteFeatureChange.d.ts

@@ -1,7 +1,7 @@
 import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
-import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
-import { type Feature } from '@apollo-annotation/schemas';
-import { AddFeatureChange } from './AddFeatureChange';
+import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import type { Feature } from '@apollo-annotation/schemas';
+import { AddFeatureChange } from './AddFeatureChange.js';
 interface SerializedDeleteFeatureChangeBase extends SerializedFeatureChange {
     typeName: 'DeleteFeatureChange';
 }
@@ -41,3 +41,4 @@ export declare class DeleteFeatureChange extends FeatureChange {
 export declare function findAndDeleteChildFeature(feature: Feature, featureIdToDelete: string, change: FeatureChange): string[];
 export declare function isDeleteFeatureChange(change: unknown): change is DeleteFeatureChange;
 export {};
+//# sourceMappingURL=DeleteFeatureChange.d.ts.map

package/dist/Changes/DeleteFeatureChange.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"DeleteFeatureChange.d.ts","sourceRoot":"","sources":["../../src/Changes/DeleteFeatureChange.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AACvE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,4BAA4B,CAAA;AAEzD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AAExD,UAAU,iCAAkC,SAAQ,uBAAuB;IACzE,QAAQ,EAAE,qBAAqB,CAAA;CAChC;AAED,MAAM,WAAW,0BAA0B;IACzC,cAAc,EAAE,yBAAyB,CAAA;IACzC,eAAe,CAAC,EAAE,MAAM,CAAA;CACzB;AAED,UAAU,mCACR,SAAQ,iCAAiC,EACvC,0BAA0B;CAAG;AAEjC,UAAU,qCACR,SAAQ,iCAAiC;IACzC,OAAO,EAAE,0BAA0B,EAAE,CAAA;CACtC;AAED,MAAM,MAAM,6BAA6B,GACrC,mCAAmC,GACnC,qCAAqC,CAAA;AAEzC,qBAAa,mBAAoB,SAAQ,aAAa;IACpD,QAAQ,wBAAiC;IACzC,OAAO,EAAE,0BAA0B,EAAE,CAAA;gBAEzB,IAAI,EAAE,6BAA6B,EAAE,OAAO,CAAC,EAAE,aAAa;IAKxE,IAAI,YAAY,WAEf;IAED,MAAM,IAAI,6BAA6B;IASvC;;;;OAIG;IACG,eAAe,CAAC,OAAO,EAAE,eAAe;IA2ExC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAoBhD,UAAU;CAoBX;AAED;;;;;;GAMG;AACH,wBAAgB,yBAAyB,CACvC,OAAO,EAAE,OAAO,EAChB,iBAAiB,EAAE,MAAM,EACzB,MAAM,EAAE,aAAa,GACpB,MAAM,EAAE,CAoBV;AAED,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,OAAO,GACd,MAAM,IAAI,mBAAmB,CAE/B"}

package/dist/Changes/DeleteFeatureChange.js

@@ -1,14 +1,9 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.DeleteFeatureChange = void 0;
-exports.findAndDeleteChildFeature = findAndDeleteChildFeature;
-exports.isDeleteFeatureChange = isDeleteFeatureChange;
 /* eslint-disable @typescript-eslint/restrict-template-expressions */
 /* eslint-disable @typescript-eslint/require-await */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-const common_1 = require("@apollo-annotation/common");
-const AddFeatureChange_1 = require("./AddFeatureChange");
-class DeleteFeatureChange extends common_1.FeatureChange {
+import { FeatureChange, } from '@apollo-annotation/common';
+import { AddFeatureChange } from './AddFeatureChange.js';
+export class DeleteFeatureChange extends FeatureChange {
     typeName = 'DeleteFeatureChange';
     changes;
     constructor(json, options) {
@@ -124,7 +119,7 @@ class DeleteFeatureChange extends common_1.FeatureChange {
             parentFeatureId: deleteFeatureChange.parentFeatureId,
         }));
         logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
-        return new AddFeatureChange_1.AddFeatureChange({
+        return new AddFeatureChange({
             changedIds: inverseChangedIds,
             typeName: 'AddFeatureChange',
             changes: inverseChanges,
@@ -132,7 +127,6 @@ class DeleteFeatureChange extends common_1.FeatureChange {
         }, { logger });
     }
 }
-exports.DeleteFeatureChange = DeleteFeatureChange;
 /**
  * Delete feature's subfeatures that match an ID and return the IDs of any
  * sub-subfeatures that were deleted
@@ -140,7 +134,7 @@ exports.DeleteFeatureChange = DeleteFeatureChange;
  * @param featureIdToDelete -
  * @returns - list of deleted feature IDs
  */
-function findAndDeleteChildFeature(feature, featureIdToDelete, change) {
+export function findAndDeleteChildFeature(feature, featureIdToDelete, change) {
     if (!feature.children) {
         throw new Error(`Feature ${feature._id} has no children`);
     }
@@ -161,7 +155,7 @@ function findAndDeleteChildFeature(feature, featureIdToDelete, change) {
     }
     throw new Error(`Feature "${featureIdToDelete}" not found in ${_id}`);
 }
-function isDeleteFeatureChange(change) {
+export function isDeleteFeatureChange(change) {
     return change.typeName === 'DeleteFeatureChange';
 }
 //# sourceMappingURL=DeleteFeatureChange.js.map

package/dist/Changes/DeleteFeatureChange.js.map

@@ -1 +1 @@
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package/dist/Changes/DeleteUserChange.d.ts

@@ -23,3 +23,4 @@ export declare class DeleteUserChange extends Change {
     getInverse(): DeleteUserChange;
 }
 export {};
+//# sourceMappingURL=DeleteUserChange.d.ts.map

package/dist/Changes/DeleteUserChange.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"DeleteUserChange.d.ts","sourceRoot":"","sources":["../../src/Changes/DeleteUserChange.ts"],"names":[],"mappings":"AACA,OAAO,EACL,MAAM,EACN,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,KAAK,kBAAkB,EACvB,KAAK,gBAAgB,EACrB,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAElC,MAAM,WAAW,8BAA+B,SAAQ,gBAAgB;IACtE,QAAQ,EAAE,kBAAkB,CAAA;IAC5B,MAAM,EAAE,MAAM,CAAA;CACf;AAGD,MAAM,WAAW,uBAAuB;CAAG;AAE3C,UAAU,gCACR,SAAQ,8BAA8B,EACpC,uBAAuB;CAAG;AAE9B,UAAU,kCACR,SAAQ,8BAA8B;IACtC,OAAO,EAAE,uBAAuB,EAAE,CAAA;CACnC;AAED,MAAM,MAAM,0BAA0B,GAClC,gCAAgC,GAChC,kCAAkC,CAAA;AAEtC,qBAAa,gBAAiB,SAAQ,MAAM;IAC1C,QAAQ,qBAA8B;IACtC,OAAO,EAAE,uBAAuB,EAAE,CAAA;IAClC,MAAM,EAAE,MAAM,CAAA;gBAEF,IAAI,EAAE,0BAA0B,EAAE,OAAO,CAAC,EAAE,aAAa;IAMrE,MAAM,IAAI,0BAA0B;IAK9B,eAAe,CAAC,OAAO,EAAE,eAAe;IAcxC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAK/C,eAAe,CAAC,UAAU,EAAE,eAAe;IAEjD,UAAU;CAcX"}

package/dist/Changes/DeleteUserChange.js

@@ -1,9 +1,6 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.DeleteUserChange = void 0;
 /* eslint-disable @typescript-eslint/require-await */
-const common_1 = require("@apollo-annotation/common");
-class DeleteUserChange extends common_1.Change {
+import { Change, } from '@apollo-annotation/common';
+export class DeleteUserChange extends Change {
     typeName = 'DeleteUserChange';
     changes;
     userId;
@@ -49,5 +46,4 @@ class DeleteUserChange extends common_1.Change {
         // }
     }
 }
-exports.DeleteUserChange = DeleteUserChange;
 //# sourceMappingURL=DeleteUserChange.js.map

package/dist/Changes/DeleteUserChange.js.map

@@ -1 +1 @@
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package/dist/Changes/FeatureAttributeChange.d.ts

@@ -30,3 +30,4 @@ export declare class FeatureAttributeChange extends FeatureChange {
 }
 export declare function isFeatureAttributeChange(change: unknown): change is FeatureAttributeChange;
 export {};
+//# sourceMappingURL=FeatureAttributeChange.d.ts.map

package/dist/Changes/FeatureAttributeChange.d.ts.map

@@ -0,0 +1 @@
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package/dist/Changes/FeatureAttributeChange.js

@@ -1,12 +1,8 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.FeatureAttributeChange = void 0;
-exports.isFeatureAttributeChange = isFeatureAttributeChange;
 /* eslint-disable @typescript-eslint/restrict-template-expressions */
 /* eslint-disable @typescript-eslint/require-await */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-const common_1 = require("@apollo-annotation/common");
-class FeatureAttributeChange extends common_1.FeatureChange {
+import { FeatureChange, } from '@apollo-annotation/common';
+export class FeatureAttributeChange extends FeatureChange {
     typeName = 'FeatureAttributeChange';
     changes;
     constructor(json, options) {
@@ -124,8 +120,7 @@ class FeatureAttributeChange extends common_1.FeatureChange {
         }, { logger });
     }
 }
-exports.FeatureAttributeChange = FeatureAttributeChange;
-function isFeatureAttributeChange(change) {
+export function isFeatureAttributeChange(change) {
     return (change.typeName === 'FeatureAttributeChange');
 }
 //# sourceMappingURL=FeatureAttributeChange.js.map

package/dist/Changes/FeatureAttributeChange.js.map

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+{"version":3,"file":"FeatureAttributeChange.js","sourceRoot":"","sources":["../../src/Changes/FeatureAttributeChange.ts"],"names":[],"mappings":"AAAA,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AA0BlC,MAAM,OAAO,sBAAuB,SAAQ,aAAa;IACvD,QAAQ,GAAG,wBAAiC,CAAA;IAC5C,OAAO,CAAiC;IAExC,YAAY,IAAsC,EAAE,OAAuB;QACzE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,aAAa,EAAE,aAAa,EAAE,SAAS,EAAE,CAAC,GAAG,OAAO,CAAA;YAC7D,OAAO;gBACL,QAAQ;gBACR,UAAU;gBACV,QAAQ;gBACR,SAAS;gBACT,aAAa;gBACb,aAAa;aACd,CAAA;QACH,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAEhC,MAAM,kBAAkB,GAGlB,EAAE,CAAA;QACR,yDAAyD;QACzD,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,CAAA;YAE5B,yBAAyB;YACzB,MAAM,eAAe,GAAG,MAAM,YAAY;iBACvC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;iBAC9B,OAAO,CAAC,OAAO,CAAC;iBAChB,IAAI,EAAE,CAAA;YAET,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,GAAG,CAAA;gBAC7F,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;gBACvB,uHAAuH;YACzH,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,EAAE,CAAC,CAAA;YAEvE,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,CAAA;YACtE,IAAI,CAAC,YAAY,EAAE,CAAC;gBAClB,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE,CAAC,CAAA;YACpE,kBAAkB,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,CAAC,CAAA;QACrE,CAAC;QAED,MAAM,EAAE,WAAW,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QACnC,IAAI,UAAgC,CAAA;QACpC,IAAI,WAAW,EAAE,CAAC;YAChB,UAAU,GAAG,WAAW,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QACrC,CAAC;QACD,uBAAuB;QACvB,KAAK,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,IAAI,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;YAC9C,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAA;YAChC,MAAM,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,kBAAkB,CAAC,GAAG,CAAC,CAAA;YAC5D,MAAM,iBAAiB,GAAG,UAAU,EAAE,IAAI,CACxC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,IAAI,aAAa,IAAI,EAAE,IAAI,CAAC,OAAO,EAAE,UAAU,IAAI,EAAE,CAAC,CACjE,CAAA;YACD,OAAO,CAAC,UAAU,GAAG,aAAa,CAAA;YAClC,IAAI,iBAAiB,EAAE,CAAC;gBACtB,MAAM,UAAU,GAAG,IAAI,CAAC,aAAa,CAAC,eAAe,EAAE,UAAU,CAAC,CAAA;gBAClE,eAAe,CAAC,UAAU,GAAG,UAAU,CAAA;gBACvC,eAAe,CAAC,YAAY,CAAC,YAAY,CAAC,CAAA;YAC5C,CAAC;YACD,IAAI,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5C,eAAe,CAAC,YAAY,CAAC,YAAY,CAAC,CAAA,CAAC,iFAAiF;YAC9H,CAAC;iBAAM,CAAC;gBACN,eAAe,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA,CAAC,iFAAiF;YAC5H,CAAC;YAED,IAAI,CAAC;gBACH,MAAM,eAAe,CAAC,IAAI,EAAE,CAAA;YAC9B,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,KAAK,EAAE,CAAC,CAAA;gBACtC,MAAM,KAAK,CAAA;YACb,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,sEAAsE,IAAI,CAAC,SAAS,CAClF,eAAe,CAChB,EAAE,CACJ,CAAA;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,kCAAkC,CAAC,CAAA;IACrD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,KAAK,MAAM,CAAC,GAAG,EAAE,SAAS,CAAC,IAAI,IAAI,CAAC,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC;YACzD,MAAM,OAAO,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,CAAA;YAC/C,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,2CAA2C,SAAS,GAAG,CAAC,CAAA;YAC1E,CAAC;YACD,OAAO,CAAC,aAAa,CACnB,IAAI,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,aAAa,CAAC,CAAC,CACzD,CAAA;QACH,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACtD,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;YAChE,SAAS,EAAE,SAAS,CAAC,SAAS;YAC9B,aAAa,EAAE,SAAS,CAAC,aAAa;YACtC,aAAa,EAAE,SAAS,CAAC,aAAa;SACvC,CAAC,CAAC,CAAA;QACH,OAAO,IAAI,sBAAsB,CAC/B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ,EAAE,wBAAwB;YAClC,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAED,MAAM,UAAU,wBAAwB,CACtC,MAAe;IAEf,OAAO,CACJ,MAAiC,CAAC,QAAQ,KAAK,wBAAwB,CACzE,CAAA;AACH,CAAC"}

package/dist/Changes/FromFileBaseChange.d.ts

@@ -1,7 +1,7 @@
 import { AssemblySpecificChange, type ServerDataStore } from '@apollo-annotation/common';
-import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
-import { type FileDocument } from '@apollo-annotation/schemas';
-import { type GFF3Feature } from '@gmod/gff';
+import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import type { FileDocument } from '@apollo-annotation/schemas';
+import type { GFF3Feature } from '@gmod/gff';
 export declare abstract class FromFileBaseChange extends AssemblySpecificChange {
     addRefSeqIntoDb(fileDoc: FileDocument, assembly: string, backend: ServerDataStore): Promise<void>;
     private refSeqCache;
@@ -9,3 +9,4 @@ export declare abstract class FromFileBaseChange extends AssemblySpecificChange
     addFeatureIntoDb(gff3Feature: GFF3Feature, backend: ServerDataStore): Promise<void>;
     getAllIds(feature: AnnotationFeatureSnapshot): string[];
 }
+//# sourceMappingURL=FromFileBaseChange.d.ts.map

package/dist/Changes/FromFileBaseChange.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"FromFileBaseChange.d.ts","sourceRoot":"","sources":["../../src/Changes/FromFileBaseChange.ts"],"names":[],"mappings":"AAEA,OAAO,EACL,sBAAsB,EACtB,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AACvE,OAAO,KAAK,EAAE,YAAY,EAAkB,MAAM,4BAA4B,CAAA;AAC9E,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AAI5C,8BAAsB,kBAAmB,SAAQ,sBAAsB;IAC/D,eAAe,CACnB,OAAO,EAAE,YAAY,EACrB,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,eAAe;IAoJ1B,OAAO,CAAC,WAAW,CAAoC;IAEjD,sBAAsB,CAAC,OAAO,EAAE,eAAe;IAc/C,gBAAgB,CAAC,WAAW,EAAE,WAAW,EAAE,OAAO,EAAE,eAAe;IAwCzE,SAAS,CAAC,OAAO,EAAE,yBAAyB,GAAG,MAAM,EAAE;CAUxD"}

package/dist/Changes/FromFileBaseChange.js

@@ -1,11 +1,8 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.FromFileBaseChange = void 0;
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
-const common_1 = require("@apollo-annotation/common");
-const GFF3_1 = require("../GFF3");
-class FromFileBaseChange extends common_1.AssemblySpecificChange {
+import { AssemblySpecificChange, } from '@apollo-annotation/common';
+import { gff3ToAnnotationFeature } from '../GFF3/index.js';
+export class FromFileBaseChange extends AssemblySpecificChange {
     async addRefSeqIntoDb(fileDoc, assembly, backend) {
         const { logger } = this;
         const { filesService, refSeqChunkModel, refSeqModel, user } = backend;
@@ -24,8 +21,6 @@ class FromFileBaseChange extends common_1.AssemblySpecificChange {
         logger.debug?.('starting sequence stream');
         let lineCount = 0;
         const decoder = new TextDecoder();
-        // @ts-expect-error type is wrong here
-        // eslint-disable-next-line @typescript-eslint/await-thenable
         for await (const data of sequenceStream) {
             const chunk = decoder.decode(data);
             lastLineIsIncomplete = !chunk.endsWith('\n');
@@ -178,7 +173,7 @@ class FromFileBaseChange extends common_1.AssemblySpecificChange {
         if (!refSeqDoc) {
             throw new Error(`RefSeq was not found by assembly "${assembly}" and seq_id "${refName}" not found`);
         }
-        const newFeature = (0, GFF3_1.gff3ToAnnotationFeature)(gff3Feature, refSeqDoc._id);
+        const newFeature = gff3ToAnnotationFeature(gff3Feature, refSeqDoc._id);
         const allIds = this.getAllIds(newFeature);
         const indexedIds = this.getIndexedIds(newFeature, idsToIndex);
         // Add into Mongo
@@ -198,5 +193,4 @@ class FromFileBaseChange extends common_1.AssemblySpecificChange {
         return allIds;
     }
 }
-exports.FromFileBaseChange = FromFileBaseChange;
 //# sourceMappingURL=FromFileBaseChange.js.map

package/dist/Changes/FromFileBaseChange.js.map

@@ -1 +1 @@
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+{"version":3,"file":"FromFileBaseChange.js","sourceRoot":"","sources":["../../src/Changes/FromFileBaseChange.ts"],"names":[],"mappings":"AAAA,4DAA4D;AAC5D,0DAA0D;AAC1D,OAAO,EACL,sBAAsB,GAEvB,MAAM,2BAA2B,CAAA;AAKlC,OAAO,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAA;AAE1D,MAAM,OAAgB,kBAAmB,SAAQ,sBAAsB;IACrE,KAAK,CAAC,eAAe,CACnB,OAAqB,EACrB,QAAgB,EAChB,OAAwB;QAExB,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACvB,MAAM,EAAE,YAAY,EAAE,gBAAgB,EAAE,WAAW,EAAE,IAAI,EAAE,GAAG,OAAO,CAAA;QACrE,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC,GAAG,CAAA;QAClC,MAAM,eAAe,GAAG,UAAU,IAAI,MAAM,CAAC,UAAU,CAAC,CAAA;QACxD,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,IAAI,SAAqC,CAAA;QACzC,IAAI,gBAAgB,GAAG,OAAO,CAAC,IAAI,KAAK,aAAa,CAAA;QAErD,uDAAuD;QACvD,MAAM,cAAc,GAAG,YAAY,CAAC,aAAa,CAAC,OAAO,CAAC,CAAA;QAC1D,IAAI,cAAc,GAAG,EAAE,CAAA;QACvB,IAAI,cAAc,GAAG,EAAE,CAAA;QACvB,IAAI,oBAAoB,GAAG,IAAI,CAAA;QAC/B,IAAI,cAAc,GAAG,KAAK,CAAA;QAC1B,MAAM,CAAC,KAAK,EAAE,CAAC,0BAA0B,CAAC,CAAA;QAC1C,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;QACjC,IAAI,KAAK,EAAE,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;YACxC,MAAM,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;YAClC,oBAAoB,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;YAC5C,2HAA2H;YAC3H,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;YAClC,IAAI,cAAc,EAAE,CAAC;gBACnB,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,cAAc,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAA;gBACzC,cAAc,GAAG,EAAE,CAAA;YACrB,CAAC;YACD,IAAI,oBAAoB,EAAE,CAAC;gBACzB,cAAc,GAAG,KAAK,CAAC,GAAG,EAAE,IAAI,EAAE,CAAA;YACpC,CAAC;YACD,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;gBACzB,SAAS,EAAE,CAAA;gBACX,IAAI,SAAS,GAAG,SAAS,KAAK,CAAC,EAAE,CAAC;oBAChC,MAAM,CAAC,KAAK,EAAE,CAAC,aAAa,SAAS,QAAQ,CAAC,CAAA;gBAChD,CAAC;gBACD,0EAA0E;gBAC1E,IAAI,CAAC,gBAAgB,EAAE,CAAC;oBACtB,IAAI,IAAI,CAAC,IAAI,EAAE,KAAK,SAAS,EAAE,CAAC;wBAC9B,gBAAgB,GAAG,IAAI,CAAA;oBACzB,CAAC;oBACD,SAAQ;gBACV,CAAC;gBACD,MAAM,cAAc,GAAG,mBAAmB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;gBACrD,8DAA8D;gBAC9D,IAAI,cAAc,EAAE,CAAC;oBACnB,cAAc,GAAG,IAAI,CAAA;oBACrB,MAAM,CAAC,KAAK,EAAE,CACZ,wCAAwC,cAAc,CAAC,CAAC,CAAC,GAAG,CAC7D,CAAA;oBAED,mGAAmG;oBACnG,IAAI,cAAc,KAAK,EAAE,EAAE,CAAC;wBAC1B,IAAI,CAAC,SAAS,EAAE,CAAC;4BACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;wBAC7C,CAAC;wBACD,SAAS,IAAI,cAAc,CAAC,MAAM,CAAA;wBAClC,iGAAiG;wBACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;4BAC5B;gCACE,MAAM,EAAE,SAAS,CAAC,GAAG;gCACrB,CAAC,EAAE,UAAU;gCACb,QAAQ,EAAE,cAAc;gCACxB,IAAI;gCACJ,MAAM,EAAE,CAAC,CAAC;6BACX;yBACF,CAAC,CAAA;wBACF,cAAc,GAAG,EAAE,CAAA;oBACrB,CAAC;oBACD,MAAM,SAAS,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAA;oBACjD,iEAAiE;oBACjE,SAAS,GAAG,CAAC,CAAA;oBACb,UAAU,GAAG,CAAC,CAAA;oBAEd,MAAM,IAAI,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAA;oBACrC,MAAM,WAAW,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAA;oBAErE,iGAAiG;oBACjG,MAAM,CAAC,YAAY,CAAC,GAAG,MAAM,WAAW,CAAC,MAAM,CAAC;wBAC9C;4BACE,IAAI;4BACJ,WAAW;4BACX,QAAQ;4BACR,MAAM,EAAE,CAAC;4BACT,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,eAAe,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;4BAC5D,IAAI;4BACJ,MAAM,EAAE,CAAC,CAAC;yBACX;qBACF,CAAC,CAAA;oBACF,MAAM,CAAC,KAAK,EAAE,CACZ,qBAAqB,IAAI,YAAY,WAAW,aAAa,YAAY,CAAC,GAAG,GAAG,CACjF,CAAA;oBACD,SAAS,GAAG,YAAY,CAAA;gBAC1B,CAAC;qBAAM,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;oBAC3B,IAAI,CAAC,SAAS,EAAE,CAAC;wBACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;oBAC7C,CAAC;oBACD,MAAM,EAAE,GAAG,EAAE,SAAS,EAAE,GAAG,SAAS,CAAA;oBACpC,cAAc,IAAI,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;oBAC5C,4DAA4D;oBAC5D,OAAO,cAAc,CAAC,MAAM,IAAI,SAAS,EAAE,CAAC;wBAC1C,MAAM,QAAQ,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAA;wBACnD,SAAS,IAAI,QAAQ,CAAC,MAAM,CAAA;wBAC5B,iGAAiG;wBACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;4BAC5B,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC,EAAE,UAAU,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE;yBAC3D,CAAC,CAAA;wBACF,UAAU,EAAE,CAAA;wBACZ,yBAAyB;wBACzB,cAAc,GAAG,cAAc,CAAC,KAAK,CAAC,SAAS,CAAC,CAAA;oBAClD,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QACD,IAAI,CAAC,cAAc,EAAE,CAAC;YACpB,MAAM,IAAI,KAAK,CAAC,sCAAsC,CAAC,CAAA;QACzD,CAAC;QAED,IAAI,cAAc,IAAI,oBAAoB,EAAE,CAAC;YAC3C,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;YAC7C,CAAC;YACD,yEAAyE;YACzE,IAAI,oBAAoB,EAAE,CAAC;gBACzB,cAAc,IAAI,cAAc,CAAA;YAClC,CAAC;YACD,SAAS,IAAI,cAAc,CAAC,MAAM,CAAA;YAClC,MAAM,CAAC,OAAO,EAAE,CACd,4CAA4C,SAAS,CAAC,GAAG,YAAY,UAAU,oCAAoC,SAAS,OAAO,cAAc,GAAG,CACrJ,CAAA;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,gCAAgC,UAAU,QAAQ,SAAS,CAAC,GAAG,GAAG,CACnE,CAAA;YACD,iGAAiG;YACjG,MAAM,gBAAgB,CAAC,MAAM,CAAC;gBAC5B;oBACE,MAAM,EAAE,SAAS,CAAC,GAAG;oBACrB,CAAC,EAAE,UAAU;oBACb,QAAQ,EAAE,cAAc;oBACxB,IAAI;oBACJ,MAAM,EAAE,CAAC,CAAC;iBACX;aACF,CAAC,CAAA;YACF,MAAM,SAAS,CAAC,SAAS,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC,CAAA;QAClD,CAAC;IACH,CAAC;IAEO,WAAW,GAAG,IAAI,GAAG,EAA0B,CAAA;IAEvD,KAAK,CAAC,sBAAsB,CAAC,OAAwB;QACnD,MAAM,EAAE,YAAY,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QAC7C,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QACjC,MAAM,CAAC,KAAK,EAAE,CAAC,6CAA6C,QAAQ,EAAE,CAAC,CAAA;QAEvE,MAAM,OAAO,GAAqB,MAAM,WAAW;aAChD,IAAI,CAAC,EAAE,QAAQ,EAAE,CAAC;aAClB,IAAI,EAAE,CAAA;QAET,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,YAAY,CAAC,UAA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package/dist/Changes/ImportJBrowseConfigChange.d.ts

@@ -44,3 +44,4 @@ export declare class ImportJBrowseConfigChange extends Change {
     getInverse(): ImportJBrowseConfigChange;
 }
 export {};
+//# sourceMappingURL=ImportJBrowseConfigChange.d.ts.map

package/dist/Changes/ImportJBrowseConfigChange.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ImportJBrowseConfigChange.d.ts","sourceRoot":"","sources":["../../src/Changes/ImportJBrowseConfigChange.ts"],"names":[],"mappings":"AACA,OAAO,EACL,MAAM,EACN,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,KAAK,kBAAkB,EACvB,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAElC,UAAU,eAAe;IACvB,QAAQ,EAAE;QAAE,OAAO,EAAE;YAAE,IAAI,EAAE,MAAM,CAAA;SAAE,CAAA;KAAE,CAAA;CACxC;AAED,UAAU,YAAY;IACpB,IAAI,EAAE,MAAM,CAAA;IACZ,OAAO,EAAE,MAAM,CAAA;CAChB;AAED,UAAU,aAAa;IACrB,IAAI,EAAE,MAAM,CAAA;CACb;AAED,UAAU,sBAAsB;IAC9B,IAAI,EAAE,MAAM,CAAA;CACb;AAED,MAAM,WAAW,aAAa;IAC5B,UAAU,CAAC,EAAE,eAAe,EAAE,CAAA;IAC9B,aAAa,CAAC,EAAE;QACd,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAA;KACvC,CAAA;IACD,MAAM,CAAC,EAAE,YAAY,EAAE,CAAA;IACvB,OAAO,CAAC,EAAE,aAAa,EAAE,CAAA;IACzB,gBAAgB,CAAC,EAAE,sBAAsB,EAAE,CAAA;IAC3C,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAA;CACvB;AAED,MAAM,WAAW,mCAAmC;IAClD,QAAQ,EAAE,2BAA2B,CAAA;IACrC,gBAAgB,CAAC,EAAE,aAAa,CAAA;IAChC,gBAAgB,CAAC,EAAE,aAAa,CAAA;CACjC;AAED,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,aAAa,GAAG,aAAa,CAqCxE;AAED,qBAAa,yBAA0B,SAAQ,MAAM;IACnD,QAAQ,8BAAuC;IAC/C,gBAAgB,CAAC,EAAE,aAAa,CAAA;IAChC,gBAAgB,CAAC,EAAE,aAAa,CAAA;gBAG9B,IAAI,EAAE,mCAAmC,EACzC,OAAO,CAAC,EAAE,aAAa;IAOzB,MAAM,IAAI,mCAAmC;IAKvC,eAAe,CAAC,OAAO,EAAE,eAAe;IAYxC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAK/C,eAAe,CAAC,UAAU,EAAE,eAAe;IAEjD,UAAU;CAWX"}

package/dist/Changes/ImportJBrowseConfigChange.js

@@ -1,10 +1,6 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ImportJBrowseConfigChange = void 0;
-exports.filterJBrowseConfig = filterJBrowseConfig;
 /* eslint-disable @typescript-eslint/require-await */
-const common_1 = require("@apollo-annotation/common");
-function filterJBrowseConfig(config) {
+import { Change, } from '@apollo-annotation/common';
+export function filterJBrowseConfig(config) {
     const { __v, _id, assemblies, configuration, internetAccounts, plugins, tracks, ...rest } = config;
     // Need to make sure that configuration.ApolloPlugin.hasRole isn't set
     const filteredConfig = rest;
@@ -29,7 +25,7 @@ function filterJBrowseConfig(config) {
     }
     return filteredConfig;
 }
-class ImportJBrowseConfigChange extends common_1.Change {
+export class ImportJBrowseConfigChange extends Change {
     typeName = 'ImportJBrowseConfigChange';
     oldJBrowseConfig;
     newJBrowseConfig;
@@ -67,5 +63,4 @@ class ImportJBrowseConfigChange extends common_1.Change {
         }, { logger });
     }
 }
-exports.ImportJBrowseConfigChange = ImportJBrowseConfigChange;
 //# sourceMappingURL=ImportJBrowseConfigChange.js.map

package/dist/Changes/ImportJBrowseConfigChange.js.map

@@ -1 +1 @@
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package/dist/Changes/LocationEndChange.d.ts

@@ -30,3 +30,4 @@ export declare class LocationEndChange extends FeatureChange {
 }
 export declare function isLocationEndChange(change: unknown): change is LocationEndChange;
 export {};
+//# sourceMappingURL=LocationEndChange.d.ts.map

package/dist/Changes/LocationEndChange.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"LocationEndChange.d.ts","sourceRoot":"","sources":["../../src/Changes/LocationEndChange.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAGlC,UAAU,+BAAgC,SAAQ,uBAAuB;IACvE,QAAQ,EAAE,mBAAmB,CAAA;CAC9B;AAED,MAAM,WAAW,wBAAwB;IACvC,SAAS,EAAE,MAAM,CAAA;IACjB,MAAM,EAAE,MAAM,CAAA;IACd,MAAM,EAAE,MAAM,CAAA;CACf;AAED,UAAU,iCACR,SAAQ,+BAA+B,EACrC,wBAAwB;CAAG;AAE/B,UAAU,mCACR,SAAQ,+BAA+B;IACvC,OAAO,EAAE,wBAAwB,EAAE,CAAA;CACpC;AAED,MAAM,MAAM,2BAA2B,GACnC,iCAAiC,GACjC,mCAAmC,CAAA;AAEvC,qBAAa,iBAAkB,SAAQ,aAAa;IAClD,QAAQ,sBAA+B;IACvC,OAAO,EAAE,wBAAwB,EAAE,CAAA;gBAEvB,IAAI,EAAE,2BAA2B,EAAE,OAAO,CAAC,EAAE,aAAa;IAKtE,MAAM,IAAI,2BAA2B;IASrC;;;;OAIG;IACG,eAAe,CAAC,OAAO,EAAE,eAAe;IAuExC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAchD,UAAU;CAkBX;AAED,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,OAAO,GACd,MAAM,IAAI,iBAAiB,CAE7B"}

package/dist/Changes/LocationEndChange.js

@@ -1,12 +1,8 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.LocationEndChange = void 0;
-exports.isLocationEndChange = isLocationEndChange;
 /* eslint-disable @typescript-eslint/restrict-template-expressions */
 /* eslint-disable @typescript-eslint/require-await */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-const common_1 = require("@apollo-annotation/common");
-class LocationEndChange extends common_1.FeatureChange {
+import { FeatureChange, } from '@apollo-annotation/common';
+export class LocationEndChange extends FeatureChange {
     typeName = 'LocationEndChange';
     changes;
     constructor(json, options) {
@@ -125,8 +121,7 @@ class LocationEndChange extends common_1.FeatureChange {
         }, { logger });
     }
 }
-exports.LocationEndChange = LocationEndChange;
-function isLocationEndChange(change) {
+export function isLocationEndChange(change) {
     return change.typeName === 'LocationEndChange';
 }
 //# sourceMappingURL=LocationEndChange.js.map

package/dist/Changes/LocationEndChange.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LocationEndChange.js","sourceRoot":"","sources":["../../src/Changes/LocationEndChange.ts"],"names":[],"mappings":"AAAA,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AA0BlC,MAAM,OAAO,iBAAkB,SAAQ,aAAa;IAClD,QAAQ,GAAG,mBAA4B,CAAA;IACvC,OAAO,CAA4B;IAEnC,YAAY,IAAiC,EAAE,OAAuB;QACpE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,OAAO,CAAA;YAC/C,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,CAAA;QACtE,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,wJAAwJ;QACxJ,MAAM,gBAAgB,GAAsB,EAAE,CAAA;QAC9C,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;YAE5C,4DAA4D;YAC5D,IAAI,eAAmD,CAAA;YACvD,IAAI,OAAmC,CAAA;YACvC,KAAK,MAAM,GAAG,IAAI,gBAAgB,EAAE,CAAC;gBACnC,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,GAAG,EAAE,SAAS,CAAC,CAAA;gBAC1D,IAAI,YAAY,EAAE,CAAC;oBACjB,eAAe,GAAG,GAAG,CAAA;oBACrB,OAAO,GAAG,YAAY,CAAA;oBACtB,MAAK;gBACP,CAAC;YACH,CAAC;YACD,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,0DAA0D;gBAC1D,eAAe,GAAG,MAAM,YAAY;qBACjC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;qBAC9B,OAAO,CAAC,OAAO,CAAC;qBAChB,IAAI,EAAE,CAAA;gBACT,IAAI,eAAe,EAAE,CAAC;oBACpB,gBAAgB,CAAC,IAAI,CAAC,eAAe,CAAC,CAAA;gBACxC,CAAC;YACH,CAAC;YAED,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,GAAG,CAAA;gBAC7F,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;gBACvB,uHAAuH;YACzH,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,gCAAgC,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,EAAE,CAClE,CAAA;YAED,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,OAAO,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,CAAA;YAC7D,CAAC;YACD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;YAC/D,IAAI,OAAO,CAAC,GAAG,KAAK,MAAM,EAAE,CAAC;gBAC3B,MAAM,MAAM,GAAG,sCAAsC,CAAA;gBACrD,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,OAAO,CAAC,GAAG,GAAG,MAAM,CAAA;YACpB,IAAI,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5C,eAAe,CAAC,YAAY,CAAC,KAAK,CAAC,CAAA,CAAC,iFAAiF;YACvH,CAAC;iBAAM,CAAC;gBACN,eAAe,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA,CAAC,iFAAiF;YAC5H,CAAC;QACH,CAAC;QACD,KAAK,MAAM,GAAG,IAAI,gBAAgB,EAAE,CAAC;YACnC,IAAI,CAAC;gBACH,MAAM,GAAG,CAAC,IAAI,EAAE,CAAA;YAClB,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,KAAK,EAAE,CAAC,CAAA;gBACtC,MAAM,KAAK,CAAA;YACb,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;YACpC,MAAM,OAAO,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,CAAA;YAC/C,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,2CAA2C,SAAS,GAAG,CAAC,CAAA;YAC1E,CAAC;YACD,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;QACxB,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAChE,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;YAChE,SAAS,EAAE,SAAS,CAAC,SAAS;YAC9B,MAAM,EAAE,SAAS,CAAC,MAAM;YACxB,MAAM,EAAE,SAAS,CAAC,MAAM;SACzB,CAAC,CAAC,CAAA;QACH,OAAO,IAAI,iBAAiB,CAC1B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ;YACR,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAED,MAAM,UAAU,mBAAmB,CACjC,MAAe;IAEf,OAAQ,MAA4B,CAAC,QAAQ,KAAK,mBAAmB,CAAA;AACvE,CAAC"}

package/dist/Changes/LocationStartChange.d.ts

@@ -30,3 +30,4 @@ export declare class LocationStartChange extends FeatureChange {
 }
 export declare function isLocationStartChange(change: unknown): change is LocationStartChange;
 export {};
+//# sourceMappingURL=LocationStartChange.d.ts.map

package/dist/Changes/LocationStartChange.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"LocationStartChange.d.ts","sourceRoot":"","sources":["../../src/Changes/LocationStartChange.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAGlC,UAAU,iCAAkC,SAAQ,uBAAuB;IACzE,QAAQ,EAAE,qBAAqB,CAAA;CAChC;AAED,UAAU,0BAA0B;IAClC,SAAS,EAAE,MAAM,CAAA;IACjB,QAAQ,EAAE,MAAM,CAAA;IAChB,QAAQ,EAAE,MAAM,CAAA;CACjB;AAED,UAAU,mCACR,SAAQ,iCAAiC,EACvC,0BAA0B;CAAG;AAEjC,UAAU,qCACR,SAAQ,iCAAiC;IACzC,OAAO,EAAE,0BAA0B,EAAE,CAAA;CACtC;AAED,MAAM,MAAM,6BAA6B,GACrC,mCAAmC,GACnC,qCAAqC,CAAA;AAEzC,qBAAa,mBAAoB,SAAQ,aAAa;IACpD,QAAQ,wBAAiC;IACzC,OAAO,EAAE,0BAA0B,EAAE,CAAA;gBAEzB,IAAI,EAAE,6BAA6B,EAAE,OAAO,CAAC,EAAE,aAAa;IAKxE,MAAM,IAAI,6BAA6B;IASvC;;;;OAIG;IACG,eAAe,CAAC,OAAO,EAAE,eAAe;IAuExC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IAchD,UAAU;CAkBX;AAED,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,OAAO,GACd,MAAM,IAAI,mBAAmB,CAE/B"}

package/dist/Changes/LocationStartChange.js

@@ -1,12 +1,8 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.LocationStartChange = void 0;
-exports.isLocationStartChange = isLocationStartChange;
 /* eslint-disable @typescript-eslint/restrict-template-expressions */
 /* eslint-disable @typescript-eslint/require-await */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-const common_1 = require("@apollo-annotation/common");
-class LocationStartChange extends common_1.FeatureChange {
+import { FeatureChange, } from '@apollo-annotation/common';
+export class LocationStartChange extends FeatureChange {
     typeName = 'LocationStartChange';
     changes;
     constructor(json, options) {
@@ -125,8 +121,7 @@ class LocationStartChange extends common_1.FeatureChange {
         }, { logger });
     }
 }
-exports.LocationStartChange = LocationStartChange;
-function isLocationStartChange(change) {
+export function isLocationStartChange(change) {
     return change.typeName === 'LocationStartChange';
 }
 //# sourceMappingURL=LocationStartChange.js.map

package/dist/Changes/LocationStartChange.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LocationStartChange.js","sourceRoot":"","sources":["../../src/Changes/LocationStartChange.ts"],"names":[],"mappings":"AAAA,qEAAqE;AACrE,qDAAqD;AACrD,gEAAgE;AAChE,OAAO,EAGL,aAAa,GAId,MAAM,2BAA2B,CAAA;AA0BlC,MAAM,OAAO,mBAAoB,SAAQ,aAAa;IACpD,QAAQ,GAAG,qBAA8B,CAAA;IACzC,OAAO,CAA8B;IAErC,YAAY,IAAmC,EAAE,OAAuB;QACtE,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,SAAS,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IAC1D,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QACxD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,MAAM,CAAC,EAAE,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAC,GAAG,OAAO,CAAA;YACnD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,CAAA;QAC1E,CAAC;QACD,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAA;IACpD,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CAAC,OAAwB;QAC5C,MAAM,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;QACzC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;QAChC,wJAAwJ;QACxJ,MAAM,gBAAgB,GAAsB,EAAE,CAAA;QAC9C,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,QAAQ,EAAE,GAAG,MAAM,CAAA;YAEhD,4DAA4D;YAC5D,IAAI,eAAmD,CAAA;YACvD,IAAI,OAAmC,CAAA;YACvC,KAAK,MAAM,GAAG,IAAI,gBAAgB,EAAE,CAAC;gBACnC,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,CAAC,GAAG,EAAE,SAAS,CAAC,CAAA;gBAC1D,IAAI,YAAY,EAAE,CAAC;oBACjB,eAAe,GAAG,GAAG,CAAA;oBACrB,OAAO,GAAG,YAAY,CAAA;oBACtB,MAAK;gBACP,CAAC;YACH,CAAC;YACD,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,0DAA0D;gBAC1D,eAAe,GAAG,MAAM,YAAY;qBACjC,OAAO,CAAC,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;qBAC9B,OAAO,CAAC,OAAO,CAAC;qBAChB,IAAI,EAAE,CAAA;gBACT,IAAI,eAAe,EAAE,CAAC;oBACpB,gBAAgB,CAAC,IAAI,CAAC,eAAe,CAAC,CAAA;gBACxC,CAAC;YACH,CAAC;YAED,IAAI,CAAC,eAAe,EAAE,CAAC;gBACrB,MAAM,MAAM,GAAG,kEAAkE,SAAS,GAAG,CAAA;gBAC7F,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;gBACvB,uHAAuH;YACzH,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CACZ,gCAAgC,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,EAAE,CAClE,CAAA;YAED,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,OAAO,GAAG,IAAI,CAAC,gBAAgB,CAAC,eAAe,EAAE,SAAS,CAAC,CAAA;YAC7D,CAAC;YACD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,MAAM,GAAG,2CAA2C,CAAA;gBAC1D,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,MAAM,CAAC,KAAK,EAAE,CAAC,sBAAsB,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;YAC/D,IAAI,OAAO,CAAC,GAAG,KAAK,QAAQ,EAAE,CAAC;gBAC7B,MAAM,MAAM,GAAG,sCAAsC,CAAA;gBACrD,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;gBACpB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAA;YACzB,CAAC;YACD,OAAO,CAAC,GAAG,GAAG,QAAQ,CAAA;YACtB,IAAI,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC5C,eAAe,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA,CAAC,iFAAiF;YACzH,CAAC;iBAAM,CAAC;gBACN,eAAe,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA,CAAC,iFAAiF;YAC5H,CAAC;QACH,CAAC;QACD,KAAK,MAAM,GAAG,IAAI,gBAAgB,EAAE,CAAC;YACnC,IAAI,CAAC;gBACH,MAAM,GAAG,CAAC,IAAI,EAAE,CAAA;YAClB,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,CAAC,KAAK,EAAE,CAAC,eAAe,KAAK,EAAE,CAAC,CAAA;gBACtC,MAAM,KAAK,CAAA;YACb,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CAAC,QAA4B;QACnD,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,SAA0B;QAC9C,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;QACD,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,MAAM,EAAE,SAAS,EAAE,QAAQ,EAAE,GAAG,MAAM,CAAA;YACtC,MAAM,OAAO,GAAG,SAAS,CAAC,UAAU,CAAC,SAAS,CAAC,CAAA;YAC/C,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,2CAA2C,SAAS,GAAG,CAAC,CAAA;YAC1E,CAAC;YACD,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAA;QAC1B,CAAC;IACH,CAAC;IAED,UAAU;QACR,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAA;QAChE,MAAM,iBAAiB,GAAG,CAAC,GAAG,UAAU,CAAC,CAAC,OAAO,EAAE,CAAA;QACnD,MAAM,cAAc,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC;YAClE,SAAS,EAAE,WAAW,CAAC,SAAS;YAChC,QAAQ,EAAE,WAAW,CAAC,QAAQ;YAC9B,QAAQ,EAAE,WAAW,CAAC,QAAQ;SAC/B,CAAC,CAAC,CAAA;QACH,OAAO,IAAI,mBAAmB,CAC5B;YACE,UAAU,EAAE,iBAAiB;YAC7B,QAAQ;YACR,OAAO,EAAE,cAAc;YACvB,QAAQ;SACT,EACD,EAAE,MAAM,EAAE,CACX,CAAA;IACH,CAAC;CACF;AAED,MAAM,UAAU,qBAAqB,CACnC,MAAe;IAEf,OAAQ,MAA8B,CAAC,QAAQ,KAAK,qBAAqB,CAAA;AAC3E,CAAC"}

package/dist/Changes/MergeExonsChange.d.ts

@@ -1,6 +1,6 @@
 import { type ChangeOptions, type ClientDataStore, FeatureChange, type LocalGFF3DataStore, type SerializedFeatureChange, type ServerDataStore } from '@apollo-annotation/common';
-import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
-import { UndoMergeExonsChange } from './UndoMergeExonsChange';
+import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
+import { UndoMergeExonsChange } from './UndoMergeExonsChange.js';
 interface SerializedMergeExonsChangeBase extends SerializedFeatureChange {
     typeName: 'MergeExonsChange';
 }
@@ -27,3 +27,4 @@ export declare class MergeExonsChange extends FeatureChange {
     getInverse(): UndoMergeExonsChange;
 }
 export {};
+//# sourceMappingURL=MergeExonsChange.d.ts.map

package/dist/Changes/MergeExonsChange.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"MergeExonsChange.d.ts","sourceRoot":"","sources":["../../src/Changes/MergeExonsChange.ts"],"names":[],"mappings":"AAIA,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,aAAa,EACb,KAAK,kBAAkB,EACvB,KAAK,uBAAuB,EAC5B,KAAK,eAAe,EACrB,MAAM,2BAA2B,CAAA;AAClC,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAKvE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAA;AAEhE,UAAU,8BAA+B,SAAQ,uBAAuB;IACtE,QAAQ,EAAE,kBAAkB,CAAA;CAC7B;AAED,MAAM,WAAW,uBAAuB;IACtC,SAAS,EAAE,yBAAyB,CAAA;IACpC,UAAU,EAAE,yBAAyB,CAAA;IACrC,eAAe,EAAE,MAAM,CAAA;CACxB;AAED,UAAU,gCACR,SAAQ,8BAA8B,EACpC,uBAAuB;CAAG;AAE9B,UAAU,kCACR,SAAQ,8BAA8B;IACtC,OAAO,EAAE,uBAAuB,EAAE,CAAA;CACnC;AAED,MAAM,MAAM,0BAA0B,GAClC,gCAAgC,GAChC,kCAAkC,CAAA;AAEtC,qBAAa,gBAAiB,SAAQ,aAAa;IACjD,QAAQ,qBAA8B;IACtC,OAAO,EAAE,uBAAuB,EAAE,CAAA;gBAEtB,IAAI,EAAE,0BAA0B,EAAE,OAAO,CAAC,EAAE,aAAa;IAKrE,IAAI,YAAY,WAEf;IAED,MAAM,IAAI,0BAA0B;IAiB9B,eAAe,CAAC,OAAO,EAAE,eAAe;IA4CxC,kBAAkB,CAAC,QAAQ,EAAE,kBAAkB;IAI/C,eAAe,CAAC,SAAS,EAAE,eAAe;IA8BhD,UAAU;CAkDX"}

package/dist/Changes/MergeExonsChange.js

@@ -1,14 +1,11 @@
-"use strict";
 /* eslint-disable unicorn/prefer-structured-clone */
 /* eslint-disable @typescript-eslint/require-await */
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.MergeExonsChange = void 0;
-const common_1 = require("@apollo-annotation/common");
-const util_1 = require("../util");
-const DeleteFeatureChange_1 = require("./DeleteFeatureChange");
-const UndoMergeExonsChange_1 = require("./UndoMergeExonsChange");
-class MergeExonsChange extends common_1.FeatureChange {
+import { FeatureChange, } from '@apollo-annotation/common';
+import { attributesToRecords, stringifyAttributes } from '../util.js';
+import { findAndDeleteChildFeature } from './DeleteFeatureChange.js';
+import { UndoMergeExonsChange } from './UndoMergeExonsChange.js';
+export class MergeExonsChange extends FeatureChange {
     typeName = 'MergeExonsChange';
     changes;
     constructor(json, options) {
@@ -60,10 +57,10 @@ class MergeExonsChange extends common_1.FeatureChange {
                 ? JSON.parse(JSON.stringify(mergedExon.attributes))
                 : {};
             mergedAttributes.merged_with = [
-                (0, util_1.stringifyAttributes)((0, util_1.attributesToRecords)(secondExon.attributes)),
+                stringifyAttributes(attributesToRecords(secondExon.attributes)),
             ];
             mergedExon.attributes = mergedAttributes;
-            const deletedIds = (0, DeleteFeatureChange_1.findAndDeleteChildFeature)(topLevelFeature, secondExon._id, this);
+            const deletedIds = findAndDeleteChildFeature(topLevelFeature, secondExon._id, this);
             deletedIds.push(secondExon._id);
             topLevelFeature.allIds = topLevelFeature.allIds.filter((id) => !deletedIds.includes(id));
             await topLevelFeature.save();
@@ -86,7 +83,7 @@ class MergeExonsChange extends common_1.FeatureChange {
             mergedExon.setMin(Math.min(firstExon.min, secondExon.min));
             mergedExon.setMax(Math.max(firstExon.max, secondExon.max));
             const mrg = mergedExon.attributes.get('merged_with')?.slice() ?? [];
-            const mergedWith = (0, util_1.stringifyAttributes)((0, util_1.attributesToRecords)(secondExon.attributes));
+            const mergedWith = stringifyAttributes(attributesToRecords(secondExon.attributes));
             if (!mrg.includes(mergedWith)) {
                 mrg.push(mergedWith);
             }
@@ -102,7 +99,7 @@ class MergeExonsChange extends common_1.FeatureChange {
             parentFeatureId: mergeExonChange.parentFeatureId,
         }));
         logger.debug?.(`INVERSE CHANGE '${JSON.stringify(inverseChanges)}'`);
-        return new UndoMergeExonsChange_1.UndoMergeExonsChange({
+        return new UndoMergeExonsChange({
             changedIds: inverseChangedIds,
             typeName: 'UndoMergeExonsChange',
             changes: inverseChanges,
@@ -110,5 +107,4 @@ class MergeExonsChange extends common_1.FeatureChange {
         }, { logger });
     }
 }
-exports.MergeExonsChange = MergeExonsChange;
 //# sourceMappingURL=MergeExonsChange.js.map