@apollo-annotation/jbrowse-plugin-apollo 0.3.5 → 0.3.6

package/dist/jbrowse-plugin-apollo.umd.production.min.js

@@ -1,2 +1,2 @@
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if(e.match_available){if((r=Do._tr_tally(e,0,e.window[e.strstart-1]))&&ca(e,!1),e.strstart++,e.lookahead--,0===e.strm.avail_out)return 1}else e.match_available=1,e.strstart++,e.lookahead--}return e.match_available&&(r=Do._tr_tally(e,0,e.window[e.strstart-1]),e.match_available=0),e.insert=e.strstart<Xo-1?e.strstart:Xo-1,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(ca(e,!1),0===e.strm.avail_out)?1:2}function ya(e,t,n,r,o){this.good_length=e,this.max_lazy=t,this.nice_length=n,this.max_chain=r,this.func=o}function 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Lo.Buf16(2*Vo+1),sa(this.depth),this.l_buf=0,this.lit_bufsize=0,this.last_lit=0,this.d_buf=0,this.opt_len=0,this.static_len=0,this.matches=0,this.insert=0,this.bi_buf=0,this.bi_valid=0}function _a(e){var t;return e&&e.state?(e.total_in=e.total_out=0,e.data_type=Wo,(t=e.state).pending=0,t.pending_out=0,t.wrap<0&&(t.wrap=-t.wrap),t.status=t.wrap?ta:ra,e.adler=2===t.wrap?0:1,t.last_flush=zo,Do._tr_init(t),Go):aa(e,Ho)}function ba(e){var t,n=_a(e);return n===Go&&((t=e.state).window_size=2*t.w_size,sa(t.head),t.max_lazy_match=Po[t.level].max_lazy,t.good_match=Po[t.level].good_length,t.nice_match=Po[t.level].nice_length,t.max_chain_length=Po[t.level].max_chain,t.strstart=0,t.block_start=0,t.lookahead=0,t.insert=0,t.match_length=t.prev_length=Xo-1,t.match_available=0,t.ins_h=0),n}function wa(e,t,n,r,o,a){if(!e)return Ho;var i=1;if(-1===t&&(t=6),r<0?(i=0,r=-r):r>15&&(i=2,r-=16),o<1||o>9||n!==$o||r<8||r>15||t<0||t>9||a<0||a>4)return aa(e,Ho);8===r&&(r=9);var s=new va;return e.state=s,s.strm=e,s.wrap=i,s.gzhead=null,s.w_bits=r,s.w_size=1<<s.w_bits,s.w_mask=s.w_size-1,s.hash_bits=o+7,s.hash_size=1<<s.hash_bits,s.hash_mask=s.hash_size-1,s.hash_shift=~~((s.hash_bits+Xo-1)/Xo),s.window=new Lo.Buf8(2*s.w_size),s.head=new Lo.Buf16(s.hash_size),s.prev=new Lo.Buf16(s.w_size),s.lit_bufsize=1<<o+6,s.pending_buf_size=4*s.lit_bufsize,s.pending_buf=new Lo.Buf8(s.pending_buf_size),s.d_buf=1*s.lit_bufsize,s.l_buf=3*s.lit_bufsize,s.level=t,s.strategy=a,s.method=n,ba(e)}Po=[new ya(0,0,0,0,ha),new ya(4,4,8,4,ma),new ya(4,5,16,8,ma),new ya(4,6,32,32,ma),new ya(4,4,16,16,ga),new ya(8,16,32,32,ga),new ya(8,16,128,128,ga),new ya(8,32,128,256,ga),new ya(32,128,258,1024,ga),new ya(32,258,258,4096,ga)],Vr.deflateInit=function(e,t){return wa(e,t,$o,15,8,0)},Vr.deflateInit2=wa,Vr.deflateReset=ba,Vr.deflateResetKeep=_a,Vr.deflateSetHeader=function(e,t){return e&&e.state?2!==e.state.wrap?Ho:(e.state.gzhead=t,Go):Ho},Vr.deflate=function(e,t){var n,r,o,a;if(!e||!e.state||t>5||t<0)return e?aa(e,Ho):Ho;if(r=e.state,!e.output||!e.input&&0!==e.avail_in||r.status===oa&&4!==t)return aa(e,0===e.avail_out?-5:Ho);if(r.strm=e,n=r.last_flush,r.last_flush=t,r.status===ta)if(2===r.wrap)e.adler=0,ua(r,31),ua(r,139),ua(r,8),r.gzhead?(ua(r,(r.gzhead.text?1:0)+(r.gzhead.hcrc?2:0)+(r.gzhead.extra?4:0)+(r.gzhead.name?8:0)+(r.gzhead.comment?16:0)),ua(r,255&r.gzhead.time),ua(r,r.gzhead.time>>8&255),ua(r,r.gzhead.time>>16&255),ua(r,r.gzhead.time>>24&255),ua(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),ua(r,255&r.gzhead.os),r.gzhead.extra&&r.gzhead.extra.length&&(ua(r,255&r.gzhead.extra.length),ua(r,r.gzhead.extra.length>>8&255)),r.gzhead.hcrc&&(e.adler=Bo(e.adler,r.pending_buf,r.pending,0)),r.gzindex=0,r.status=69):(ua(r,0),ua(r,0),ua(r,0),ua(r,0),ua(r,0),ua(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),ua(r,3),r.status=ra);else{var i=$o+(r.w_bits-8<<4)<<8;i|=(r.strategy>=2||r.level<2?0:r.level<6?1:6===r.level?2:3)<<6,0!==r.strstart&&(i|=32),i+=31-i%31,r.status=ra,fa(r,i),0!==r.strstart&&(fa(r,e.adler>>>16),fa(r,65535&e.adler)),e.adler=1}if(69===r.status)if(r.gzhead.extra){for(o=r.pending;r.gzindex<(65535&r.gzhead.extra.length)&&(r.pending!==r.pending_buf_size||(r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),la(e),o=r.pending,r.pending!==r.pending_buf_size));)ua(r,255&r.gzhead.extra[r.gzindex]),r.gzindex++;r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),r.gzindex===r.gzhead.extra.length&&(r.gzindex=0,r.status=73)}else r.status=73;if(73===r.status)if(r.gzhead.name){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),la(e),o=r.pending,r.pending===r.pending_buf_size)){a=1;break}a=r.gzindex<r.gzhead.name.length?255&r.gzhead.name.charCodeAt(r.gzindex++):0,ua(r,a)}while(0!==a);r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),0===a&&(r.gzindex=0,r.status=91)}else r.status=91;if(91===r.status)if(r.gzhead.comment){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),la(e),o=r.pending,r.pending===r.pending_buf_size)){a=1;break}a=r.gzindex<r.gzhead.comment.length?255&r.gzhead.comment.charCodeAt(r.gzindex++):0,ua(r,a)}while(0!==a);r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),0===a&&(r.status=na)}else r.status=na;if(r.status===na&&(r.gzhead.hcrc?(r.pending+2>r.pending_buf_size&&la(e),r.pending+2<=r.pending_buf_size&&(ua(r,255&e.adler),ua(r,e.adler>>8&255),e.adler=0,r.status=ra)):r.status=ra),0!==r.pending){if(la(e),0===e.avail_out)return r.last_flush=-1,Go}else if(0===e.avail_in&&ia(t)<=ia(n)&&4!==t)return aa(e,-5);if(r.status===oa&&0!==e.avail_in)return aa(e,-5);if(0!==e.avail_in||0!==r.lookahead||t!==zo&&r.status!==oa){var s=2===r.strategy?function(e,t){for(var n;;){if(0===e.lookahead&&(pa(e),0===e.lookahead)){if(t===zo)return 1;break}if(e.match_length=0,n=Do._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++,n&&(ca(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(ca(e,!1),0===e.strm.avail_out)?1:2}(r,t):3===r.strategy?function(e,t){for(var n,r,o,a,i=e.window;;){if(e.lookahead<=Qo){if(pa(e),e.lookahead<=Qo&&t===zo)return 1;if(0===e.lookahead)break}if(e.match_length=0,e.lookahead>=Xo&&e.strstart>0&&(r=i[o=e.strstart-1])===i[++o]&&r===i[++o]&&r===i[++o]){a=e.strstart+Qo;do{}while(r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&o<a);e.match_length=Qo-(a-o),e.match_length>e.lookahead&&(e.match_length=e.lookahead)}if(e.match_length>=Xo?(n=Do._tr_tally(e,1,e.match_length-Xo),e.lookahead-=e.match_length,e.strstart+=e.match_length,e.match_length=0):(n=Do._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++),n&&(ca(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(ca(e,!1),0===e.strm.avail_out)?1:2}(r,t):Po[r.level].func(r,t);if(3!==s&&4!==s||(r.status=oa),1===s||3===s)return 0===e.avail_out&&(r.last_flush=-1),Go;if(2===s&&(1===t?Do._tr_align(r):5!==t&&(Do._tr_stored_block(r,0,0,!1),3===t&&(sa(r.head),0===r.lookahead&&(r.strstart=0,r.block_start=0,r.insert=0))),la(e),0===e.avail_out))return r.last_flush=-1,Go}return 4!==t?Go:r.wrap<=0?1:(2===r.wrap?(ua(r,255&e.adler),ua(r,e.adler>>8&255),ua(r,e.adler>>16&255),ua(r,e.adler>>24&255),ua(r,255&e.total_in),ua(r,e.total_in>>8&255),ua(r,e.total_in>>16&255),ua(r,e.total_in>>24&255)):(fa(r,e.adler>>>16),fa(r,65535&e.adler)),la(e),r.wrap>0&&(r.wrap=-r.wrap),0!==r.pending?Go:1)},Vr.deflateEnd=function(e){var t;return e&&e.state?(t=e.state.status)!==ta&&69!==t&&73!==t&&91!==t&&t!==na&&t!==ra&&t!==oa?aa(e,Ho):(e.state=null,t===ra?aa(e,-3):Go):Ho},Vr.deflateSetDictionary=function(e,t){var n,r,o,a,i,s,l,c,u=t.length;if(!e||!e.state)return Ho;if(2===(a=(n=e.state).wrap)||1===a&&n.status!==ta||n.lookahead)return Ho;for(1===a&&(e.adler=qo(e.adler,t,u,0)),n.wrap=0,u>=n.w_size&&(0===a&&(sa(n.head),n.strstart=0,n.block_start=0,n.insert=0),c=new 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this.onEnd(n),this.ended=!0,!1;0!==o.avail_out&&(0!==o.avail_in||4!==r&&2!==r)||this.onData("string"===this.options.to?Ia.buf2binstring(Ta.shrinkBuf(o.output,o.next_out)):Ta.shrinkBuf(o.output,o.next_out))}while((o.avail_in>0||0===o.avail_out)&&1!==n);return 4===r?(n=Ra.deflateEnd(this.strm),this.onEnd(n),this.ended=!0,n===ja):2!==r||(this.onEnd(ja),o.avail_out=0,!0)},Ba.prototype.onData=function(e){this.chunks.push(e)},Ba.prototype.onEnd=function(e){e===ja&&(this.result="string"===this.options.to?this.chunks.join(""):Ta.flattenChunks(this.chunks)),this.chunks=[],this.err=e,this.msg=this.strm.msg},$r.Deflate=Ba,$r.deflate=Ua,$r.deflateRaw=function(e,t){return(t=t||{}).raw=!0,Ua(e,t)},$r.gzip=function(e,t){return(t=t||{}).gzip=!0,Ua(e,t)};var za={},Ga={},Ha=Wr,Wa=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],$a=[16,16,16,16,16,16,16,16,17,17,17,17,18,18,18,18,19,19,19,19,20,20,20,20,21,21,21,21,16,72,78],Va=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577,0,0],Ja=[16,16,16,16,17,17,18,18,19,19,20,20,21,21,22,22,23,23,24,24,25,25,26,26,27,27,28,28,29,29,64,64],Ya=Wr,Ka=To,Za=Fo,Xa=function(e,t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b,w,S,x,E,k,A;k=e.input,o=(r=e.next_in)+(e.avail_in-5),A=e.output,i=(a=e.next_out)-(t-e.avail_out),s=a+(e.avail_out-257),l=(n=e.state).dmax,c=n.wsize,u=n.whave,f=n.wnext,d=n.window,p=n.hold,h=n.bits,m=n.lencode,g=n.distcode,y=(1<<n.lenbits)-1,v=(1<<n.distbits)-1;e:do{h<15&&(p+=k[r++]<<h,p+=k[r++]<<(h+=8),h+=8),_=m[p&y];t:for(;;){if(p>>>=b=_>>>24,h-=b,0==(b=_>>>16&255))A[a++]=65535&_;else{if(!(16&b)){if(0==(64&b)){_=m[(65535&_)+(p&(1<<b)-1)];continue t}if(32&b){n.mode=12;break e}e.msg="invalid literal/length code",n.mode=30;break e}w=65535&_,(b&=15)&&(h<b&&(p+=k[r++]<<h,h+=8),w+=p&(1<<b)-1,p>>>=b,h-=b),h<15&&(p+=k[r++]<<h,p+=k[r++]<<(h+=8),h+=8),_=g[p&v];n:for(;;){if(p>>>=b=_>>>24,h-=b,!(16&(b=_>>>16&255))){if(0==(64&b)){_=g[(65535&_)+(p&(1<<b)-1)];continue n}e.msg="invalid distance code",n.mode=30;break e}if(S=65535&_,h<(b&=15)&&(p+=k[r++]<<h,(h+=8)<b&&(p+=k[r++]<<h,h+=8)),(S+=p&(1<<b)-1)>l){e.msg="invalid distance too far back",n.mode=30;break e}if(p>>>=b,h-=b,S>(b=a-i)){if((b=S-b)>u&&n.sane){e.msg="invalid distance too far back",n.mode=30;break e}if(x=0,E=d,0===f){if(x+=c-b,b<w){w-=b;do{A[a++]=d[x++]}while(--b);x=a-S,E=A}}else if(f<b){if(x+=c+f-b,(b-=f)<w){w-=b;do{A[a++]=d[x++]}while(--b);if(x=0,f<w){w-=b=f;do{A[a++]=d[x++]}while(--b);x=a-S,E=A}}}else if(x+=f-b,b<w){w-=b;do{A[a++]=d[x++]}while(--b);x=a-S,E=A}for(;w>2;)A[a++]=E[x++],A[a++]=E[x++],A[a++]=E[x++],w-=3;w&&(A[a++]=E[x++],w>1&&(A[a++]=E[x++]))}else{x=a-S;do{A[a++]=A[x++],A[a++]=A[x++],A[a++]=A[x++],w-=3}while(w>2);w&&(A[a++]=A[x++],w>1&&(A[a++]=A[x++]))}break}}break}}while(r<o&&a<s);p&=(1<<(h-=(w=h>>3)<<3))-1,e.next_in=r-=w,e.next_out=a,e.avail_in=r<o?o-r+5:5-(r-o),e.avail_out=a<s?s-a+257:257-(a-s),n.hold=p,n.bits=h},Qa=function(e,t,n,r,o,a,i,s){var l,c,u,f,d,p,h,m,g,y=s.bits,v=0,_=0,b=0,w=0,S=0,x=0,E=0,k=0,A=0,O=0,C=null,N=0,R=new Ha.Buf16(16),T=new Ha.Buf16(16),I=null,P=0;for(v=0;v<=15;v++)R[v]=0;for(_=0;_<r;_++)R[t[n+_]]++;for(S=y,w=15;w>=1&&0===R[w];w--);if(S>w&&(S=w),0===w)return 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li(){this.mode=0,this.last=!1,this.wrap=0,this.havedict=!1,this.flags=0,this.dmax=0,this.check=0,this.total=0,this.head=null,this.wbits=0,this.wsize=0,this.whave=0,this.wnext=0,this.window=null,this.hold=0,this.bits=0,this.length=0,this.offset=0,this.extra=0,this.lencode=null,this.distcode=null,this.lenbits=0,this.distbits=0,this.ncode=0,this.nlen=0,this.ndist=0,this.have=0,this.next=null,this.lens=new Ya.Buf16(320),this.work=new Ya.Buf16(288),this.lendyn=null,this.distdyn=null,this.sane=0,this.back=0,this.was=0}function ci(e){var t;return e&&e.state?(e.total_in=e.total_out=(t=e.state).total=0,e.msg="",t.wrap&&(e.adler=1&t.wrap),t.mode=ni,t.last=0,t.havedict=0,t.dmax=32768,t.head=null,t.hold=0,t.bits=0,t.lencode=t.lendyn=new Ya.Buf32(ai),t.distcode=t.distdyn=new Ya.Buf32(ii),t.sane=1,t.back=-1,ei):ti}function ui(e){var t;return e&&e.state?((t=e.state).wsize=0,t.whave=0,t.wnext=0,ci(e)):ti}function fi(e,t){var n,r;return e&&e.state?(t<0?(n=0,t=-t):(n=1+(t>>4),t<48&&(t&=15)),t&&(t<8||t>15)?ti:(null!==(r=e.state).window&&r.wbits!==t&&(r.window=null),r.wrap=n,r.wbits=t,ui(e))):ti}function di(e,t){var n,r;return e?(r=new li,e.state=r,r.window=null,(n=fi(e,t))!==ei&&(e.state=null),n):ti}var pi,hi,mi=!0;function gi(e){if(mi){var t;for(pi=new Ya.Buf32(512),hi=new Ya.Buf32(32),t=0;t<144;)e.lens[t++]=8;for(;t<256;)e.lens[t++]=9;for(;t<280;)e.lens[t++]=7;for(;t<288;)e.lens[t++]=8;for(Qa(1,e.lens,0,288,pi,0,e.work,{bits:9}),t=0;t<32;)e.lens[t++]=5;Qa(2,e.lens,0,32,hi,0,e.work,{bits:5}),mi=!1}e.lencode=pi,e.lenbits=9,e.distcode=hi,e.distbits=5}function yi(e,t,n,r){var o,a=e.state;return null===a.window&&(a.wsize=1<<a.wbits,a.wnext=0,a.whave=0,a.window=new Ya.Buf8(a.wsize)),r>=a.wsize?(Ya.arraySet(a.window,t,n-a.wsize,a.wsize,0),a.wnext=0,a.whave=a.wsize):((o=a.wsize-a.wnext)>r&&(o=r),Ya.arraySet(a.window,t,n-r,o,a.wnext),(r-=o)?(Ya.arraySet(a.window,t,n-r,r,0),a.wnext=r,a.whave=a.wsize):(a.wnext+=o,a.wnext===a.wsize&&(a.wnext=0),a.whave<a.wsize&&(a.whave+=o))),0}Ga.inflateReset=ui,Ga.inflateReset2=fi,Ga.inflateResetKeep=ci,Ga.inflateInit=function(e){return di(e,15)},Ga.inflateInit2=di,Ga.inflate=function(e,t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b,w,S,x,E,k,A=0,O=new Ya.Buf8(4),C=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];if(!e||!e.state||!e.output||!e.input&&0!==e.avail_in)return ti;(n=e.state).mode===ri&&(n.mode=13),i=e.next_out,o=e.output,a=e.next_in,r=e.input,c=n.hold,u=n.bits,f=s=e.avail_in,d=l=e.avail_out,x=ei;e:for(;;)switch(n.mode){case ni:if(0===n.wrap){n.mode=13;break}for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(2&n.wrap&&35615===c){n.check=0,O[0]=255&c,O[1]=c>>>8&255,n.check=Za(n.check,O,2,0),c=0,u=0,n.mode=2;break}if(n.flags=0,n.head&&(n.head.done=!1),!(1&n.wrap)||(((255&c)<<8)+(c>>8))%31){e.msg="incorrect header check",n.mode=oi;break}if(8!=(15&c)){e.msg="unknown compression method",n.mode=oi;break}if(u-=4,S=8+(15&(c>>>=4)),0===n.wbits)n.wbits=S;else if(S>n.wbits){e.msg="invalid window size",n.mode=oi;break}n.dmax=1<<S,e.adler=n.check=1,n.mode=512&c?10:ri,c=0,u=0;break;case 2:for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(n.flags=c,8!=(255&n.flags)){e.msg="unknown compression method",n.mode=oi;break}if(57344&n.flags){e.msg="unknown header flags set",n.mode=oi;break}n.head&&(n.head.text=c>>8&1),512&n.flags&&(O[0]=255&c,O[1]=c>>>8&255,n.check=Za(n.check,O,2,0)),c=0,u=0,n.mode=3;case 3:for(;u<32;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.head&&(n.head.time=c),512&n.flags&&(O[0]=255&c,O[1]=c>>>8&255,O[2]=c>>>16&255,O[3]=c>>>24&255,n.check=Za(n.check,O,4,0)),c=0,u=0,n.mode=4;case 4:for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.head&&(n.head.xflags=255&c,n.head.os=c>>8),512&n.flags&&(O[0]=255&c,O[1]=c>>>8&255,n.check=Za(n.check,O,2,0)),c=0,u=0,n.mode=5;case 5:if(1024&n.flags){for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.length=c,n.head&&(n.head.extra_len=c),512&n.flags&&(O[0]=255&c,O[1]=c>>>8&255,n.check=Za(n.check,O,2,0)),c=0,u=0}else n.head&&(n.head.extra=null);n.mode=6;case 6:if(1024&n.flags&&((p=n.length)>s&&(p=s),p&&(n.head&&(S=n.head.extra_len-n.length,n.head.extra||(n.head.extra=new Array(n.head.extra_len)),Ya.arraySet(n.head.extra,r,a,p,S)),512&n.flags&&(n.check=Za(n.check,r,p,a)),s-=p,a+=p,n.length-=p),n.length))break e;n.length=0,n.mode=7;case 7:if(2048&n.flags){if(0===s)break e;p=0;do{S=r[a+p++],n.head&&S&&n.length<65536&&(n.head.name+=String.fromCharCode(S))}while(S&&p<s);if(512&n.flags&&(n.check=Za(n.check,r,p,a)),s-=p,a+=p,S)break e}else n.head&&(n.head.name=null);n.length=0,n.mode=8;case 8:if(4096&n.flags){if(0===s)break e;p=0;do{S=r[a+p++],n.head&&S&&n.length<65536&&(n.head.comment+=String.fromCharCode(S))}while(S&&p<s);if(512&n.flags&&(n.check=Za(n.check,r,p,a)),s-=p,a+=p,S)break e}else n.head&&(n.head.comment=null);n.mode=9;case 9:if(512&n.flags){for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(c!==(65535&n.check)){e.msg="header crc mismatch",n.mode=oi;break}c=0,u=0}n.head&&(n.head.hcrc=n.flags>>9&1,n.head.done=!0),e.adler=n.check=0,n.mode=ri;break;case 10:for(;u<32;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}e.adler=n.check=si(c),c=0,u=0,n.mode=11;case 11:if(0===n.havedict)return e.next_out=i,e.avail_out=l,e.next_in=a,e.avail_in=s,n.hold=c,n.bits=u,2;e.adler=n.check=1,n.mode=ri;case ri:if(5===t||6===t)break e;case 13:if(n.last){c>>>=7&u,u-=7&u,n.mode=27;break}for(;u<3;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}switch(n.last=1&c,u-=1,3&(c>>>=1)){case 0:n.mode=14;break;case 1:if(gi(n),n.mode=20,6===t){c>>>=2,u-=2;break e}break;case 2:n.mode=17;break;case 3:e.msg="invalid block type",n.mode=oi}c>>>=2,u-=2;break;case 14:for(c>>>=7&u,u-=7&u;u<32;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if((65535&c)!=(c>>>16^65535)){e.msg="invalid stored block lengths",n.mode=oi;break}if(n.length=65535&c,c=0,u=0,n.mode=15,6===t)break e;case 15:n.mode=16;case 16:if(p=n.length){if(p>s&&(p=s),p>l&&(p=l),0===p)break e;Ya.arraySet(o,r,a,p,i),s-=p,a+=p,l-=p,i+=p,n.length-=p;break}n.mode=ri;break;case 17:for(;u<14;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(n.nlen=257+(31&c),u-=5,n.ndist=1+(31&(c>>>=5)),u-=5,n.ncode=4+(15&(c>>>=5)),c>>>=4,u-=4,n.nlen>286||n.ndist>30){e.msg="too many length or distance symbols",n.mode=oi;break}n.have=0,n.mode=18;case 18:for(;n.have<n.ncode;){for(;u<3;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.lens[C[n.have++]]=7&c,c>>>=3,u-=3}for(;n.have<19;)n.lens[C[n.have++]]=0;if(n.lencode=n.lendyn,n.lenbits=7,x=Qa(0,n.lens,0,19,n.lencode,0,n.work,E={bits:n.lenbits}),n.lenbits=E.bits,x){e.msg="invalid code lengths set",n.mode=oi;break}n.have=0,n.mode=19;case 19:for(;n.have<n.nlen+n.ndist;){for(;y=(A=n.lencode[c&(1<<n.lenbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(v<16)c>>>=g,u-=g,n.lens[n.have++]=v;else{if(16===v){for(k=g+2;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(c>>>=g,u-=g,0===n.have){e.msg="invalid bit length repeat",n.mode=oi;break}S=n.lens[n.have-1],p=3+(3&c),c>>>=2,u-=2}else if(17===v){for(k=g+3;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}u-=g,S=0,p=3+(7&(c>>>=g)),c>>>=3,u-=3}else{for(k=g+7;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}u-=g,S=0,p=11+(127&(c>>>=g)),c>>>=7,u-=7}if(n.have+p>n.nlen+n.ndist){e.msg="invalid bit length repeat",n.mode=oi;break}for(;p--;)n.lens[n.have++]=S}}if(n.mode===oi)break;if(0===n.lens[256]){e.msg="invalid code -- missing end-of-block",n.mode=oi;break}if(n.lenbits=9,x=Qa(1,n.lens,0,n.nlen,n.lencode,0,n.work,E={bits:n.lenbits}),n.lenbits=E.bits,x){e.msg="invalid literal/lengths set",n.mode=oi;break}if(n.distbits=6,n.distcode=n.distdyn,x=Qa(2,n.lens,n.nlen,n.ndist,n.distcode,0,n.work,E={bits:n.distbits}),n.distbits=E.bits,x){e.msg="invalid distances set",n.mode=oi;break}if(n.mode=20,6===t)break e;case 20:n.mode=21;case 21:if(s>=6&&l>=258){e.next_out=i,e.avail_out=l,e.next_in=a,e.avail_in=s,n.hold=c,n.bits=u,Xa(e,d),i=e.next_out,o=e.output,l=e.avail_out,a=e.next_in,r=e.input,s=e.avail_in,c=n.hold,u=n.bits,n.mode===ri&&(n.back=-1);break}for(n.back=0;y=(A=n.lencode[c&(1<<n.lenbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(y&&0==(240&y)){for(_=g,b=y,w=v;y=(A=n.lencode[w+((c&(1<<_+b)-1)>>_)])>>>16&255,v=65535&A,!(_+(g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}c>>>=_,u-=_,n.back+=_}if(c>>>=g,u-=g,n.back+=g,n.length=v,0===y){n.mode=26;break}if(32&y){n.back=-1,n.mode=ri;break}if(64&y){e.msg="invalid literal/length code",n.mode=oi;break}n.extra=15&y,n.mode=22;case 22:if(n.extra){for(k=n.extra;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.length+=c&(1<<n.extra)-1,c>>>=n.extra,u-=n.extra,n.back+=n.extra}n.was=n.length,n.mode=23;case 23:for(;y=(A=n.distcode[c&(1<<n.distbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(0==(240&y)){for(_=g,b=y,w=v;y=(A=n.distcode[w+((c&(1<<_+b)-1)>>_)])>>>16&255,v=65535&A,!(_+(g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}c>>>=_,u-=_,n.back+=_}if(c>>>=g,u-=g,n.back+=g,64&y){e.msg="invalid distance code",n.mode=oi;break}n.offset=v,n.extra=15&y,n.mode=24;case 24:if(n.extra){for(k=n.extra;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.offset+=c&(1<<n.extra)-1,c>>>=n.extra,u-=n.extra,n.back+=n.extra}if(n.offset>n.dmax){e.msg="invalid distance too far back",n.mode=oi;break}n.mode=25;case 25:if(0===l)break e;if(n.offset>(p=d-l)){if((p=n.offset-p)>n.whave&&n.sane){e.msg="invalid distance too far back",n.mode=oi;break}h=p>n.wnext?n.wsize-(p-=n.wnext):n.wnext-p,p>n.length&&(p=n.length),m=n.window}else m=o,h=i-n.offset,p=n.length;p>l&&(p=l),l-=p,n.length-=p;do{o[i++]=m[h++]}while(--p);0===n.length&&(n.mode=21);break;case 26:if(0===l)break e;o[i++]=n.length,l--,n.mode=21;break;case 27:if(n.wrap){for(;u<32;){if(0===s)break e;s--,c|=r[a++]<<u,u+=8}if(e.total_out+=d-=l,n.total+=d,d&&(e.adler=n.check=n.flags?Za(n.check,o,d,i-d):Ka(n.check,o,d,i-d)),d=l,(n.flags?c:si(c))!==n.check){e.msg="incorrect data check",n.mode=oi;break}c=0,u=0}n.mode=28;case 28:if(n.wrap&&n.flags){for(;u<32;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(c!==(4294967295&n.total)){e.msg="incorrect length check",n.mode=oi;break}c=0,u=0}n.mode=29;case 29:x=1;break e;case oi:x=-3;break e;case 31:return-4;default:return ti}return e.next_out=i,e.avail_out=l,e.next_in=a,e.avail_in=s,n.hold=c,n.bits=u,(n.wsize||d!==e.avail_out&&n.mode<oi&&(n.mode<27||4!==t))&&yi(e,e.output,e.next_out,d-e.avail_out),d-=e.avail_out,e.total_in+=f-=e.avail_in,e.total_out+=d,n.total+=d,n.wrap&&d&&(e.adler=n.check=n.flags?Za(n.check,o,d,e.next_out-d):Ka(n.check,o,d,e.next_out-d)),e.data_type=n.bits+(n.last?64:0)+(n.mode===ri?128:0)+(20===n.mode||15===n.mode?256:0),(0===f&&0===d||4===t)&&x===ei&&(x=-5),x},Ga.inflateEnd=function(e){if(!e||!e.state)return ti;var t=e.state;return t.window&&(t.window=null),e.state=null,ei},Ga.inflateGetHeader=function(e,t){var n;return e&&e.state?0==(2&(n=e.state).wrap)?ti:(n.head=t,t.done=!1,ei):ti},Ga.inflateSetDictionary=function(e,t){var n,r=t.length;return e&&e.state?0!==(n=e.state).wrap&&11!==n.mode?ti:11===n.mode&&Ka(1,t,r,0)!==n.check?-3:yi(e,t,r,r)?(n.mode=31,-4):(n.havedict=1,ei):ti},Ga.inflateInfo="pako inflate (from Nodeca project)";var vi={Z_NO_FLUSH:0,Z_PARTIAL_FLUSH:1,Z_SYNC_FLUSH:2,Z_FULL_FLUSH:3,Z_FINISH:4,Z_BLOCK:5,Z_TREES:6,Z_OK:0,Z_STREAM_END:1,Z_NEED_DICT:2,Z_ERRNO:-1,Z_STREAM_ERROR:-2,Z_DATA_ERROR:-3,Z_BUF_ERROR:-5,Z_NO_COMPRESSION:0,Z_BEST_SPEED:1,Z_BEST_COMPRESSION:9,Z_DEFAULT_COMPRESSION:-1,Z_FILTERED:1,Z_HUFFMAN_ONLY:2,Z_RLE:3,Z_FIXED:4,Z_DEFAULT_STRATEGY:0,Z_BINARY:0,Z_TEXT:1,Z_UNKNOWN:2,Z_DEFLATED:8},_i=Ga,bi=Wr,wi=Sa,Si=vi,xi=jo,Ei=Na,ki=function(){this.text=0,this.time=0,this.xflags=0,this.os=0,this.extra=null,this.extra_len=0,this.name="",this.comment="",this.hcrc=0,this.done=!1},Ai=Object.prototype.toString;function Oi(e){if(!(this instanceof Oi))return new Oi(e);this.options=bi.assign({chunkSize:16384,windowBits:0,to:""},e||{});var t=this.options;t.raw&&t.windowBits>=0&&t.windowBits<16&&(t.windowBits=-t.windowBits,0===t.windowBits&&(t.windowBits=-15)),!(t.windowBits>=0&&t.windowBits<16)||e&&e.windowBits||(t.windowBits+=32),t.windowBits>15&&t.windowBits<48&&0==(15&t.windowBits)&&(t.windowBits|=15),this.err=0,this.msg="",this.ended=!1,this.chunks=[],this.strm=new Ei,this.strm.avail_out=0;var n=_i.inflateInit2(this.strm,t.windowBits);if(n!==Si.Z_OK)throw new Error(xi[n]);if(this.header=new ki,_i.inflateGetHeader(this.strm,this.header),t.dictionary&&("string"==typeof t.dictionary?t.dictionary=wi.string2buf(t.dictionary):"[object ArrayBuffer]"===Ai.call(t.dictionary)&&(t.dictionary=new Uint8Array(t.dictionary)),t.raw&&(n=_i.inflateSetDictionary(this.strm,t.dictionary))!==Si.Z_OK))throw new Error(xi[n])}function Ci(e,t){var n=new Oi(t);if(n.push(e,!0),n.err)throw n.msg||xi[n.err];return n.result}Oi.prototype.push=function(e,t){var n,r,o,a,i,s=this.strm,l=this.options.chunkSize,c=this.options.dictionary,u=!1;if(this.ended)return!1;r=t===~~t?t:!0===t?Si.Z_FINISH:Si.Z_NO_FLUSH,s.input="string"==typeof e?wi.binstring2buf(e):"[object ArrayBuffer]"===Ai.call(e)?new Uint8Array(e):e,s.next_in=0,s.avail_in=s.input.length;do{if(0===s.avail_out&&(s.output=new bi.Buf8(l),s.next_out=0,s.avail_out=l),(n=_i.inflate(s,Si.Z_NO_FLUSH))===Si.Z_NEED_DICT&&c&&(n=_i.inflateSetDictionary(this.strm,c)),n===Si.Z_BUF_ERROR&&!0===u&&(n=Si.Z_OK,u=!1),n!==Si.Z_STREAM_END&&n!==Si.Z_OK)return this.onEnd(n),this.ended=!0,!1;s.next_out&&(0!==s.avail_out&&n!==Si.Z_STREAM_END&&(0!==s.avail_in||r!==Si.Z_FINISH&&r!==Si.Z_SYNC_FLUSH)||("string"===this.options.to?(o=wi.utf8border(s.output,s.next_out),a=s.next_out-o,i=wi.buf2string(s.output,o),s.next_out=a,s.avail_out=l-a,a&&bi.arraySet(s.output,s.output,o,a,0),this.onData(i)):this.onData(bi.shrinkBuf(s.output,s.next_out)))),0===s.avail_in&&0===s.avail_out&&(u=!0)}while((s.avail_in>0||0===s.avail_out)&&n!==Si.Z_STREAM_END);return n===Si.Z_STREAM_END&&(r=Si.Z_FINISH),r===Si.Z_FINISH?(n=_i.inflateEnd(this.strm),this.onEnd(n),this.ended=!0,n===Si.Z_OK):r!==Si.Z_SYNC_FLUSH||(this.onEnd(Si.Z_OK),s.avail_out=0,!0)},Oi.prototype.onData=function(e){this.chunks.push(e)},Oi.prototype.onEnd=function(e){e===Si.Z_OK&&(this.result="string"===this.options.to?this.chunks.join(""):bi.flattenChunks(this.chunks)),this.chunks=[],this.err=e,this.msg=this.strm.msg},za.Inflate=Oi,za.inflate=Ci,za.inflateRaw=function(e,t){return(t=t||{}).raw=!0,Ci(e,t)},za.ungzip=Ci;var Ni={};(0,Wr.assign)(Ni,$r,za,vi);var Ri=Ni;function Ti(e){return Ii.apply(this,arguments)}function Ii(){return Ii=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:e.prev=0,r=0,o=0,a=[],i=0;case 5:if(l=t.subarray(r),s=new Ri.Inflate,n=s.strm,s.push(l,Ri.Z_SYNC_FLUSH),!s.err){e.next=12;break}throw new Error(s.msg);case 12:r+=n.next_in,a[o]=s.result,i+=a[o].length,o+=1;case 16:if(n.avail_in){e.next=5;break}case 17:for(c=new Uint8Array(i),u=0,f=0;u<a.length;u++)c.set(a[u],f),f+=a[u].length;return e.abrupt("return",Kt.from(c));case 22:if(e.prev=22,e.t0=e.catch(0),!"".concat(e.t0).match(/incorrect header check/)){e.next=26;break}throw new Error("problem decompressing block: incorrect gzip header check");case 26:throw e.t0;case 27:case"end":return e.stop()}}),e,null,[[0,22]])}))),Ii.apply(this,arguments)}var Pi=null;try{Pi=new WebAssembly.Instance(new WebAssembly.Module(new Uint8Array([0,97,115,109,1,0,0,0,1,13,2,96,0,1,127,96,4,127,127,127,127,1,127,3,7,6,0,1,1,1,1,1,6,6,1,127,1,65,0,11,7,50,6,3,109,117,108,0,1,5,100,105,118,95,115,0,2,5,100,105,118,95,117,0,3,5,114,101,109,95,115,0,4,5,114,101,109,95,117,0,5,8,103,101,116,95,104,105,103,104,0,0,10,191,1,6,4,0,35,0,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,126,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,127,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,128,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,129,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,130,34,4,66,32,135,167,36,0,32,4,167,11])),{}).exports}catch(bl){}function Mi(e,t,n){this.low=0|e,this.high=0|t,this.unsigned=!!n}function Fi(e){return!0===(e&&e.__isLong__)}function ji(e){var t=Math.clz32(e&-e);return e?31-t:t}Object.defineProperty(Mi.prototype,"__isLong__",{value:!0}),Mi.isLong=Fi;var Li={},Di={};function qi(e,t){var n,r,o;return t?(o=0<=(e>>>=0)&&e<256)&&(r=Di[e])?r:(n=Ui(e,0,!0),o&&(Di[e]=n),n):(o=-128<=(e|=0)&&e<128)&&(r=Li[e])?r:(n=Ui(e,e<0?-1:0,!1),o&&(Li[e]=n),n)}function Bi(e,t){if(isNaN(e))return t?Ki:Yi;if(t){if(e<0)return Ki;if(e>=$i)return ts}else{if(e<=-Vi)return ns;if(e+1>=Vi)return es}return e<0?Bi(-e,t).neg():Ui(e%Wi|0,e/Wi|0,t)}function Ui(e,t,n){return new Mi(e,t,n)}Mi.fromInt=qi,Mi.fromNumber=Bi,Mi.fromBits=Ui;var zi=Math.pow;function Gi(e,t,n){if(0===e.length)throw Error("empty string");if("number"==typeof t?(n=t,t=!1):t=!!t,"NaN"===e||"Infinity"===e||"+Infinity"===e||"-Infinity"===e)return t?Ki:Yi;if((n=n||10)<2||36<n)throw RangeError("radix");var r;if((r=e.indexOf("-"))>0)throw Error("interior hyphen");if(0===r)return Gi(e.substring(1),t,n).neg();for(var o=Bi(zi(n,8)),a=Yi,i=0;i<e.length;i+=8){var s=Math.min(8,e.length-i),l=parseInt(e.substring(i,i+s),n);if(s<8){var c=Bi(zi(n,s));a=a.mul(c).add(Bi(l))}else a=(a=a.mul(o)).add(Bi(l))}return a.unsigned=t,a}function Hi(e,t){return"number"==typeof e?Bi(e,t):"string"==typeof e?Gi(e,t):Ui(e.low,e.high,"boolean"==typeof t?t:e.unsigned)}Mi.fromString=Gi,Mi.fromValue=Hi;var Wi=4294967296,$i=Wi*Wi,Vi=$i/2,Ji=qi(16777216),Yi=qi(0);Mi.ZERO=Yi;var Ki=qi(0,!0);Mi.UZERO=Ki;var Zi=qi(1);Mi.ONE=Zi;var Xi=qi(1,!0);Mi.UONE=Xi;var Qi=qi(-1);Mi.NEG_ONE=Qi;var es=Ui(-1,2147483647,!1);Mi.MAX_VALUE=es;var ts=Ui(-1,-1,!0);Mi.MAX_UNSIGNED_VALUE=ts;var ns=Ui(0,-2147483648,!1);Mi.MIN_VALUE=ns;var rs=Mi.prototype;rs.toInt=function(){return this.unsigned?this.low>>>0:this.low},rs.toNumber=function(){return this.unsigned?(this.high>>>0)*Wi+(this.low>>>0):this.high*Wi+(this.low>>>0)},rs.toString=function(e){if((e=e||10)<2||36<e)throw RangeError("radix");if(this.isZero())return"0";if(this.isNegative()){if(this.eq(ns)){var t=Bi(e),n=this.div(t),r=n.mul(t).sub(this);return n.toString(e)+r.toInt().toString(e)}return"-"+this.neg().toString(e)}for(var o=Bi(zi(e,6),this.unsigned),a=this,i="";;){var s=a.div(o),l=(a.sub(s.mul(o)).toInt()>>>0).toString(e);if((a=s).isZero())return l+i;for(;l.length<6;)l="0"+l;i=""+l+i}},rs.getHighBits=function(){return this.high},rs.getHighBitsUnsigned=function(){return this.high>>>0},rs.getLowBits=function(){return this.low},rs.getLowBitsUnsigned=function(){return this.low>>>0},rs.getNumBitsAbs=function(){if(this.isNegative())return this.eq(ns)?64:this.neg().getNumBitsAbs();for(var e=0!=this.high?this.high:this.low,t=31;t>0&&0==(e&1<<t);t--);return 0!=this.high?t+33:t+1},rs.isZero=function(){return 0===this.high&&0===this.low},rs.eqz=rs.isZero,rs.isNegative=function(){return!this.unsigned&&this.high<0},rs.isPositive=function(){return this.unsigned||this.high>=0},rs.isOdd=function(){return 1==(1&this.low)},rs.isEven=function(){return 0==(1&this.low)},rs.equals=function(e){return Fi(e)||(e=Hi(e)),(this.unsigned===e.unsigned||this.high>>>31!=1||e.high>>>31!=1)&&this.high===e.high&&this.low===e.low},rs.eq=rs.equals,rs.notEquals=function(e){return!this.eq(e)},rs.neq=rs.notEquals,rs.ne=rs.notEquals,rs.lessThan=function(e){return this.comp(e)<0},rs.lt=rs.lessThan,rs.lessThanOrEqual=function(e){return this.comp(e)<=0},rs.lte=rs.lessThanOrEqual,rs.le=rs.lessThanOrEqual,rs.greaterThan=function(e){return this.comp(e)>0},rs.gt=rs.greaterThan,rs.greaterThanOrEqual=function(e){return this.comp(e)>=0},rs.gte=rs.greaterThanOrEqual,rs.ge=rs.greaterThanOrEqual,rs.compare=function(e){if(Fi(e)||(e=Hi(e)),this.eq(e))return 0;var t=this.isNegative(),n=e.isNegative();return t&&!n?-1:!t&&n?1:this.unsigned?e.high>>>0>this.high>>>0||e.high===this.high&&e.low>>>0>this.low>>>0?-1:1:this.sub(e).isNegative()?-1:1},rs.comp=rs.compare,rs.negate=function(){return!this.unsigned&&this.eq(ns)?ns:this.not().add(Zi)},rs.neg=rs.negate,rs.add=function(e){Fi(e)||(e=Hi(e));var t=0,n=0,r=0,o=0;return r+=(o+=(65535&this.low)+(65535&e.low))>>>16,n+=(r+=(this.low>>>16)+(e.low>>>16))>>>16,t+=(n+=(65535&this.high)+(65535&e.high))>>>16,t+=(this.high>>>16)+(e.high>>>16),Ui((r&=65535)<<16|(o&=65535),(t&=65535)<<16|(n&=65535),this.unsigned)},rs.subtract=function(e){return Fi(e)||(e=Hi(e)),this.add(e.neg())},rs.sub=rs.subtract,rs.multiply=function(e){if(this.isZero())return this;if(Fi(e)||(e=Hi(e)),Pi)return Ui(Pi.mul(this.low,this.high,e.low,e.high),Pi.get_high(),this.unsigned);if(e.isZero())return this.unsigned?Ki:Yi;if(this.eq(ns))return e.isOdd()?ns:Yi;if(e.eq(ns))return this.isOdd()?ns:Yi;if(this.isNegative())return e.isNegative()?this.neg().mul(e.neg()):this.neg().mul(e).neg();if(e.isNegative())return this.mul(e.neg()).neg();if(this.lt(Ji)&&e.lt(Ji))return Bi(this.toNumber()*e.toNumber(),this.unsigned);var t=65535&this.high,n=this.low>>>16,r=65535&this.low,o=65535&e.high,a=e.low>>>16,i=65535&e.low,s=0,l=0,c=0,u=0;return c+=(u+=r*i)>>>16,l+=(c+=n*i)>>>16,c&=65535,l+=(c+=r*a)>>>16,s+=(l+=t*i)>>>16,l&=65535,s+=(l+=n*a)>>>16,l&=65535,s+=(l+=r*o)>>>16,s+=(this.high>>>16)*i+t*a+n*o+r*(e.high>>>16),Ui((c&=65535)<<16|(u&=65535),(s&=65535)<<16|(l&=65535),this.unsigned)},rs.mul=rs.multiply,rs.divide=function(e){if(Fi(e)||(e=Hi(e)),e.isZero())throw Error("division by zero");var t,n,r;if(Pi)return this.unsigned||-2147483648!==this.high||-1!==e.low||-1!==e.high?Ui((this.unsigned?Pi.div_u:Pi.div_s)(this.low,this.high,e.low,e.high),Pi.get_high(),this.unsigned):this;if(this.isZero())return this.unsigned?Ki:Yi;if(this.unsigned){if(e.unsigned||(e=e.toUnsigned()),e.gt(this))return Ki;if(e.gt(this.shru(1)))return Xi;r=Ki}else{if(this.eq(ns))return e.eq(Zi)||e.eq(Qi)?ns:e.eq(ns)?Zi:(t=this.shr(1).div(e).shl(1)).eq(Yi)?e.isNegative()?Zi:Qi:(n=this.sub(e.mul(t)),r=t.add(n.div(e)));if(e.eq(ns))return this.unsigned?Ki:Yi;if(this.isNegative())return e.isNegative()?this.neg().div(e.neg()):this.neg().div(e).neg();if(e.isNegative())return this.div(e.neg()).neg();r=Yi}for(n=this;n.gte(e);){t=Math.max(1,Math.floor(n.toNumber()/e.toNumber()));for(var o=Math.ceil(Math.log(t)/Math.LN2),a=o<=48?1:zi(2,o-48),i=Bi(t),s=i.mul(e);s.isNegative()||s.gt(n);)s=(i=Bi(t-=a,this.unsigned)).mul(e);i.isZero()&&(i=Zi),r=r.add(i),n=n.sub(s)}return r},rs.div=rs.divide,rs.modulo=function(e){return Fi(e)||(e=Hi(e)),Pi?Ui((this.unsigned?Pi.rem_u:Pi.rem_s)(this.low,this.high,e.low,e.high),Pi.get_high(),this.unsigned):this.sub(this.div(e).mul(e))},rs.mod=rs.modulo,rs.rem=rs.modulo,rs.not=function(){return Ui(~this.low,~this.high,this.unsigned)},rs.countLeadingZeros=function(){return this.high?Math.clz32(this.high):Math.clz32(this.low)+32},rs.clz=rs.countLeadingZeros,rs.countTrailingZeros=function(){return this.low?ji(this.low):ji(this.high)+32},rs.ctz=rs.countTrailingZeros,rs.and=function(e){return Fi(e)||(e=Hi(e)),Ui(this.low&e.low,this.high&e.high,this.unsigned)},rs.or=function(e){return Fi(e)||(e=Hi(e)),Ui(this.low|e.low,this.high|e.high,this.unsigned)},rs.xor=function(e){return Fi(e)||(e=Hi(e)),Ui(this.low^e.low,this.high^e.high,this.unsigned)},rs.shiftLeft=function(e){return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ui(this.low<<e,this.high<<e|this.low>>>32-e,this.unsigned):Ui(0,this.low<<e-32,this.unsigned)},rs.shl=rs.shiftLeft,rs.shiftRight=function(e){return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ui(this.low>>>e|this.high<<32-e,this.high>>e,this.unsigned):Ui(this.high>>e-32,this.high>=0?0:-1,this.unsigned)},rs.shr=rs.shiftRight,rs.shiftRightUnsigned=function(e){return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ui(this.low>>>e|this.high<<32-e,this.high>>>e,this.unsigned):Ui(32===e?this.high:this.high>>>e-32,0,this.unsigned)},rs.shru=rs.shiftRightUnsigned,rs.shr_u=rs.shiftRightUnsigned,rs.rotateLeft=function(e){var t;return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ui(this.high,this.low,this.unsigned):e<32?Ui(this.low<<e|this.high>>>(t=32-e),this.high<<e|this.low>>>t,this.unsigned):Ui(this.high<<(e-=32)|this.low>>>(t=32-e),this.low<<e|this.high>>>t,this.unsigned)},rs.rotl=rs.rotateLeft,rs.rotateRight=function(e){var t;return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ui(this.high,this.low,this.unsigned):e<32?Ui(this.high<<(t=32-e)|this.low>>>e,this.low<<t|this.high>>>e,this.unsigned):Ui(this.low<<(t=32-(e-=32))|this.high>>>e,this.high<<t|this.low>>>e,this.unsigned)},rs.rotr=rs.rotateRight,rs.toSigned=function(){return this.unsigned?Ui(this.low,this.high,!1):this},rs.toUnsigned=function(){return this.unsigned?this:Ui(this.low,this.high,!0)},rs.toBytes=function(e){return e?this.toBytesLE():this.toBytesBE()},rs.toBytesLE=function(){var e=this.high,t=this.low;return[255&t,t>>>8&255,t>>>16&255,t>>>24,255&e,e>>>8&255,e>>>16&255,e>>>24]},rs.toBytesBE=function(){var e=this.high,t=this.low;return[e>>>24,e>>>16&255,e>>>8&255,255&e,t>>>24,t>>>16&255,t>>>8&255,255&t]},Mi.fromBytes=function(e,t,n){return n?Mi.fromBytesLE(e,t):Mi.fromBytesBE(e,t)},Mi.fromBytesLE=function(e,t){return new Mi(e[0]|e[1]<<8|e[2]<<16|e[3]<<24,e[4]|e[5]<<8|e[6]<<16|e[7]<<24,t)},Mi.fromBytesBE=function(e,t){return new Mi(e[4]<<24|e[5]<<16|e[6]<<8|e[7],e[0]<<24|e[1]<<16|e[2]<<8|e[3],t)};var os=function(){function e(t){var n=t.filehandle,r=t.path;if(X(this,e),n)this.filehandle=n;else{if(!r)throw new TypeError("either filehandle or path must be defined");this.filehandle=new Dr(r)}}var t,n,r;return ee(e,[{key:"_readLongWithOverflow",value:function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:0,n=!(arguments.length>2&&void 0!==arguments[2])||arguments[2],r=Mi.fromBytesLE(e.slice(t,t+8),n);if(r.greaterThan(Number.MAX_SAFE_INTEGER)||r.lessThan(Number.MIN_SAFE_INTEGER))throw new TypeError("integer overflow");return r.toNumber()}},{key:"_getIndex",value:function(){return this.index||(this.index=this._readIndex()),this.index}},{key:"_readIndex",value:(r=Z(J().mark((function e(){var t,n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return t=Kt.allocUnsafe(8),e.next=3,this.filehandle.read(t,0,8,0);case 3:if(n=this._readLongWithOverflow(t,0,!0)){e.next=6;break}return e.abrupt("return",[[0,0]]);case 6:if((r=new Array(n+1))[0]=[0,0],!((o=16*n)>Number.MAX_SAFE_INTEGER)){e.next=11;break}throw new TypeError("integer overflow");case 11:return t=Kt.allocUnsafe(o),e.next=14,this.filehandle.read(t,0,o,8);case 14:for(a=0;a<n;a+=1)i=this._readLongWithOverflow(t,16*a),s=this._readLongWithOverflow(t,16*a+8),r[a+1]=[i,s];return e.abrupt("return",r);case 16:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"getLastBlock",value:(n=Z(J().mark((function e(){var t;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndex();case 2:if((t=e.sent).length){e.next=5;break}return e.abrupt("return",void 0);case 5:return e.abrupt("return",t[t.length-1]);case 6:case"end":return e.stop()}}),e,this)}))),function(){return n.apply(this,arguments)})},{key:"getRelevantBlocksForRead",value:(t=Z(J().mark((function e(t,n){var r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=n+t,0!==t){e.next=3;break}return e.abrupt("return",[]);case 3:return e.next=5,this._getIndex();case 5:for(a=[],i=function(e,t){var r=e[1];return r<=n&&(t?t[1]:Infinity)>n?0:r<n?-1:1},s=0,l=(o=e.sent).length-1,c=Math.floor(o.length/2),u=i(o[c],o[c+1]);0!==u;)u>0?l=c-1:u<0&&(s=c+1),c=Math.ceil((l-s)/2)+s,u=i(o[c],o[c+1]);a.push(o[c]),f=c+1;case 15:if(!(f<o.length)){e.next=22;break}if(a.push(o[f]),!(o[f][1]>=r)){e.next=19;break}return e.abrupt("break",22);case 19:f+=1,e.next=15;break;case 22:return a[a.length-1][1]<r&&a.push([]),e.abrupt("return",a);case 24:case"end":return e.stop()}}),e,this)}))),function(e,n){return t.apply(this,arguments)})}]),e}(),as=function(){function e(t){var n=t.filehandle,r=t.path,o=t.gziFilehandle,a=t.gziPath;if(X(this,e),n)this.filehandle=n;else{if(!r)throw new TypeError("either filehandle or path must be defined");this.filehandle=new Dr(r)}if(!o&&!a&&!r)throw new TypeError("either gziFilehandle or gziPath must be defined");this.gzi=new os({filehandle:o,path:o||a||!r?"".concat(r,".gzi"):a})}var t,n,r,o;return ee(e,[{key:"stat",value:(o=Z(J().mark((function e(){var t;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.filehandle.stat();case 2:return t=e.sent,e.t0=Object,e.t1=t,e.next=7,this.getUncompressedFileSize();case 7:return e.t2=e.sent,e.t3=void 0,e.t4=void 0,e.t5={size:e.t2,blocks:e.t3,blksize:e.t4},e.abrupt("return",e.t0.assign.call(e.t0,e.t1,e.t5));case 12:case"end":return e.stop()}}),e,this)}))),function(){return o.apply(this,arguments)})},{key:"getUncompressedFileSize",value:(r=Z(J().mark((function e(){var t,n,r,o,a;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getLastBlock();case 2:return t=fe(e.sent,2),n=t[1],e.next=7,this.filehandle.stat();case 7:return r=e.sent.size,o=Kt.allocUnsafe(4),e.next=12,this.filehandle.read(o,0,4,r-28-4);case 12:if(4===e.sent.bytesRead){e.next=16;break}throw new Error("read error");case 16:return a=o.readUInt32LE(0),e.abrupt("return",n+a);case 18:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"_readAndUncompressBlock",value:(n=Z(J().mark((function e(t,n,r){var o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(o=fe(n,1)[0],a=fe(r,1)[0]){e.next=7;break}return e.next=6,this.filehandle.stat();case 6:a=e.sent.size;case 7:return i=a-o,e.next=10,this.filehandle.read(t,0,i,o);case 10:return e.next=12,Ti(t.slice(0,i));case 12:return e.abrupt("return",e.sent);case 14:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"read",value:(t=Z(J().mark((function e(t,n,r,o){var a,i,s,l,c,u,f,d,p,h;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getRelevantBlocksForRead(r,o);case 2:a=e.sent,i=Kt.allocUnsafe(65536),s=n,l=0,c=0;case 7:if(!(c<a.length-1)){e.next=18;break}return e.next=10,this._readAndUncompressBlock(i,a[c],a[c+1]);case 10:u=e.sent,f=fe(a[c],2),p=(d=f[1])>=o?0:o-d,h=Math.min(o+r,d+u.length)-d,p>=0&&p<u.length&&(u.copy(t,s,p,h),s+=h-p,l+=h-p);case 15:c+=1,e.next=7;break;case 18:return e.abrupt("return",{bytesRead:l,buffer:t});case 19:case"end":return e.stop()}}),e,this)}))),function(e,n,r,o){return t.apply(this,arguments)})}]),e}();function is(e,t){return e.offset+e.lineBytes*Math.floor(t/e.lineLength)+t%e.lineLength}function ss(e,t){return ls.apply(this,arguments)}function ls(){return ls=Z(J().mark((function e(t,n){var r,o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,t.readFile(n);case 2:if((r=e.sent)&&r.length){e.next=5;break}throw new Error("No data read from FASTA index (FAI) file");case 5:return o=0,i=r.toString("utf8").split(/\r?\n/).filter((function(e){return/\S/.test(e)})).map((function(e){return e.split("\t")})).filter((function(e){return""!==e[0]})).map((function(e){return a&&a.name===e[0]||(a={name:e[0],id:o},o+=1),{id:a.id,name:e[0],length:+e[1],start:0,end:+e[1],offset:+e[2],lineLength:+e[3],lineBytes:+e[4]}})),e.abrupt("return",{name:Object.fromEntries(i.map((function(e){return[e.name,e]}))),id:Object.fromEntries(i.map((function(e){return[e.id,e]})))});case 8:case"end":return e.stop()}}),e)}))),ls.apply(this,arguments)}var cs=function(){function e(t){var n=t.fasta,r=t.fai,o=t.path,a=t.faiPath;if(X(this,e),n)this.fasta=n;else{if(!o)throw new Error("Need to pass filehandle for fasta or path to localfile");this.fasta=new Dr(o)}if(r)this.fai=r;else if(a)this.fai=new Dr(a);else{if(!o)throw new Error("Need to pass filehandle for  or path to localfile");this.fai=new Dr("".concat(o,".fai"))}}var t,n,r,o,a,i,s,l,c;return ee(e,[{key:"_getIndexes",value:(c=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return this.indexes||(this.indexes=ss(this.fai,t)),e.abrupt("return",this.indexes);case 2:case"end":return e.stop()}}),e,this)}))),function(e){return c.apply(this,arguments)})},{key:"getSequenceNames",value:(l=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.t0=Object,e.next=3,this._getIndexes(t);case 3:return e.t1=e.sent.name,e.abrupt("return",e.t0.keys.call(e.t0,e.t1));case 5:case"end":return e.stop()}}),e,this)}))),function(e){return l.apply(this,arguments)})},{key:"getSequenceSizes",value:(s=Z(J().mark((function e(t){var n,r,o;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n={},e.next=3,this._getIndexes(t);case 3:for(r=Object.values(e.sent.id),o=0;o<r.length;o+=1)n[r[o].name]=r[o].length;return e.abrupt("return",n);case 7:case"end":return e.stop()}}),e,this)}))),function(e){return s.apply(this,arguments)})},{key:"getSequenceSize",value:(i=Z(J().mark((function e(t,n){var r;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.abrupt("return",null===(r=e.sent.name[t])||void 0===r?void 0:r.length);case 4:case"end":return e.stop()}}),e,this)}))),function(e,t){return i.apply(this,arguments)})},{key:"hasReferenceSequence",value:(a=Z(J().mark((function e(t,n){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndexes(n);case 2:return e.t0=t,e.abrupt("return",!!e.sent.name[e.t0]);case 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e(t,n,r,o){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.abrupt("return",this.getResiduesByName(t,n,r,o));case 1:case"end":return e.stop()}}),e,this)}))),function(e,t,r,o){return n.apply(this,arguments)})},{key:"_fetchFromIndexEntry",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s,l=arguments;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=l.length>3?l[3]:void 0,o=l.length>2?l[2]:void 0,!((n=l.length>1&&void 0!==l[1]?l[1]:0)<0)){e.next=6;break}throw new TypeError("regionStart cannot be less than 0");case 6:if((void 0===o||o>t.length)&&(o=t.length),!(n>=o)){e.next=9;break}return e.abrupt("return","");case 9:return a=is(t,n),i=is(t,o)-a,s=Kt.allocUnsafe(i),e.next=14,this.fasta.read(s,0,i,a,r);case 14:return e.abrupt("return",s.toString("utf8").replace(/\s+/g,""));case 15:case"end":return e.stop()}}),e,this)}))),function(e){return t.apply(this,arguments)})}]),e}(),us=function(e){ne(n,e);var t=ce(n);function n(e){var r,o=e.fasta,a=e.path,i=e.fai,s=e.faiPath,l=e.gzi,c=e.gziPath;return X(this,n),r=t.call(this,{fasta:o,path:a,fai:i,faiPath:s}),o&&l?r.fasta=new as({filehandle:o,gziFilehandle:l}):a&&c&&(r.fasta=new as({path:a,gziPath:c})),r}return ee(n)}(cs);function fs(e){return e.split(">").filter((function(e){return/\S/.test(e)})).map((function(e){var t=de(e.split("\n")),n=t[0],r=t.slice(1),o=de(n.split(" ")),a=o[0],i=o.slice(1),s=r.join("").replace(/\s/g,"");return{id:a,description:i.join(" "),sequence:s}}))}var ds=function(){function e(t){var n=t.fasta,r=t.path;if(X(this,e),n)this.fasta=n;else{if(!r)throw new Error("Need to pass fasta or path");this.fasta=new Dr(r)}this.data=this.fasta.readFile().then((function(e){return fs(e.toString("utf8"))}))}var t,n;return ee(e,[{key:"fetch",value:(n=Z(J().mark((function e(t,n,r){var o,a;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:if(o=e.sent.find((function(e){return e.id===t})),a=r-n,o){e.next=7;break}throw new Error("no sequence with id ".concat(t," exists"));case 7:return e.abrupt("return",o.sequence.substr(n,a));case 8:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"getSequenceNames",value:(t=Z(J().mark((function e(){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:return e.abrupt("return",e.sent.map((function(e){return e.id})));case 4:case"end":return e.stop()}}),e,this)}))),function(){return t.apply(this,arguments)})}]),e}(),ps=D({__proto__:null,parseSmallFasta:fs,FetchableSmallFasta:ds,IndexedFasta:cs,BgzipIndexedFasta:us}),hs=D(Hr);Object.defineProperty(Lr,"__esModule",{value:!0}),Lr.AddAssemblyFromExternalChange=void 0;var ms=ps,gs=hs,ys=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","AddAssemblyFromExternalChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"notification",get:function(){return'Assembly "'.concat(this.changes[0].assemblyName,'" added successfully. To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=fe(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,externalLocation:r.externalLocation}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b,w,S,x,E,k,A,O,C;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.assemblyModel,r=t.checkModel,o=t.refSeqModel,a=t.user,i=this.assembly,s=this.changes,l=this.logger,u=(c=Lt.env.CHUNK_SIZE)&&Number(c),f=_e(s),e.prev=5,f.s();case 7:if((d=f.n()).done){e.next=45;break}return m=(h=d.value).assemblyName,y=(g=h.externalLocation).fa,v=g.fai,b=(_=g.gzi)?new ms.BgzipIndexedFasta({fasta:new gs.RemoteFile(y,{fetch:fetch}),fai:new gs.RemoteFile(v,{fetch:fetch}),gzi:new gs.RemoteFile(_,{fetch:fetch})}):new ms.IndexedFasta({fasta:new gs.RemoteFile(y,{fetch:fetch}),fai:new gs.RemoteFile(v,{fetch:fetch})}),e.next=14,b.getSequenceSizes();case 14:if(w=e.sent){e.next=17;break}throw new Error("No data read from indexed fasta getSequenceSizes");case 17:return e.next=19,n.findOne({name:m}).exec();case 19:if(!e.sent){e.next=22;break}throw new Error('Assembly "'.concat(m,'" already exists'));case 22:return e.next=24,r.find({default:!0}).exec();case 24:return S=e.sent.map((function(e){return e._id.toHexString()})),e.next=28,n.create([{_id:i,name:m,user:a,status:-1,externalLocation:g,checks:S}]);case 28:x=fe(e.sent,1),E=x[0],null===(p=l.debug)||void 0===p||p.call(l,'Added new assembly "'.concat(m,'", docId "').concat(E._id,'"')),e.t0=J().keys(w);case 33:if((e.t1=e.t0()).done){e.next=43;break}return k=e.t1.value,e.next=37,o.create([V(V({name:k,assembly:E._id,length:w[k]},u?{chunkSize:u}:null),{},{user:a,status:-1})]);case 37:O=fe(e.sent,1),C=O[0],null===(A=l.debug)||void 0===A||A.call(l,'Added new refSeq "'.concat(k,'", docId "').concat(C._id,'"')),e.next=33;break;case 43:e.next=7;break;case 45:e.next=50;break;case 47:e.prev=47,e.t2=e.catch(5),f.e(e.t2);case 50:return e.prev=50,f.f(),e.finish(50);case 53:case"end":return e.stop()}}),e,this,[[5,47,50,53]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),a}(or.AssemblySpecificChange);Lr.AddAssemblyFromExternalChange=ys;var vs={};Object.defineProperty(vs,"__esModule",{value:!0}),vs.AddAssemblyFromFileChange=void 0;var _s=ps,bs=function(e){ne(s,e);var t,n,r,o,a,i=ce(s);function s(e,t){var n;return X(this,s),te(le(n=i.call(this,e,t)),"typeName","AddAssemblyFromFileChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(s,[{key:"notification",get:function(){return'Assembly "'.concat(this.changes[0].assemblyName,'" added successfully. To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=fe(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,fileIds:r.fileIds}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(a=Z(J().mark((function e(t){var n,r,o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=_e(this.changes),e.prev=2,n.s();case 4:if((r=n.n()).done){e.next=11;break}return a=(o=r.value).assemblyName,i=o.fileIds,e.next=9,"gzi"in i?this.executeOnServerIndexed(t,a,i):this.executeOnServerFasta(t,a,i.fa);case 9:e.next=4;break;case 11:e.next=16;break;case 13:e.prev=13,e.t0=e.catch(2),n.e(e.t0);case 16:return e.prev=16,n.f(),e.finish(16);case 19:case"end":return e.stop()}}),e,this,[[2,13,16,19]])}))),function(e){return a.apply(this,arguments)})},{key:"executeOnServerIndexed",value:(o=Z(J().mark((function e(t,n,r){var o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b,w,S,x,E,k,A,O,C,N,R,T,I;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(s=(i=Lt.env.CHUNK_SIZE)&&Number(i),Lt.env.FILE_UPLOAD_FOLDER){e.next=5;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 5:return l=r.fa,c=r.fai,u=r.gzi,f=t.assemblyModel,d=t.checkModel,p=t.fileModel,h=t.filesService,m=t.refSeqModel,g=t.user,e.next=9,p.findById(l);case 9:if(null==(y=e.sent)?void 0:y.checksum){e.next=13;break}throw new Error("No checksum for file document ".concat(null==y?void 0:y.id));case 13:return e.next=15,p.findById(c);case 15:if(null==(v=e.sent)?void 0:v.checksum){e.next=19;break}throw new Error("No checksum for file document ".concat(null==v?void 0:v.id));case 19:return e.next=21,p.findById(u);case 21:if(null==(_=e.sent)?void 0:_.checksum){e.next=25;break}throw new Error("No checksum for file document ".concat(null==_?void 0:_.id));case 25:return b=h.getFileHandle(y),w=h.getFileHandle(v),S=h.getFileHandle(_),x=new _s.BgzipIndexedFasta({fasta:b,fai:w,gzi:S}),e.next=31,x.getSequenceSizes();case 31:return E=e.sent,e.next=34,Promise.all([b.close(),w.close(),S.close()]);case 34:return e.next=36,f.findOne({name:n}).exec();case 36:if(!e.sent){e.next=39;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 39:return e.next=41,d.find({default:!0}).exec();case 41:return k=e.sent.map((function(e){return e._id.toHexString()})),e.next=45,f.create([{_id:this.assembly,name:n,user:g,status:-1,fileIds:r,checks:k}]);case 45:A=fe(e.sent,1),O=A[0],null===(o=(a=this.logger).debug)||void 0===o||o.call(a,'Added new assembly "'.concat(n,'", docId "').concat(O._id,'"')),e.t0=J().keys(E);case 50:if((e.t1=e.t0()).done){e.next=60;break}return C=e.t1.value,e.next=54,m.create([V(V({name:C,assembly:O._id,length:E[C]},s?{chunkSize:s}:null),{},{user:g,status:-1})]);case 54:T=fe(e.sent,1),I=T[0],null===(N=(R=this.logger).debug)||void 0===N||N.call(R,'Added new refSeq "'.concat(C,'", docId "').concat(I._id,'"')),e.next=50;break;case 60:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return o.apply(this,arguments)})},{key:"executeOnServerFasta",value:(r=Z(J().mark((function e(t,n,r){var o,a,i,s,l,c,u,f,d,p,h,m,g,y;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return u=t.assemblyModel,f=t.checkModel,d=t.fileModel,p=t.user,e.next=3,d.findById(r).exec();case 3:if(h=e.sent){e.next=6;break}throw new Error('File "'.concat(r,'" not found in Mongo'));case 6:return null===(o=(a=this.logger).debug)||void 0===o||o.call(a,'FileId "'.concat(r,'", checksum "').concat(h.checksum,'"')),e.next=9,u.findOne({name:n}).exec();case 9:if(!e.sent){e.next=12;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 12:return e.next=14,f.find({default:!0}).exec();case 14:return m=e.sent.map((function(e){return e._id.toHexString()})),e.next=18,u.create([{_id:this.assembly,name:n,user:p,status:-1,fileIds:{fa:r},checks:m}]);case 18:return g=fe(e.sent,1),y=g[0],null===(i=(s=this.logger).debug)||void 0===i||i.call(s,'Added new assembly "'.concat(n,'", docId "').concat(y._id,'"')),null===(l=(c=this.logger).debug)||void 0===l||l.call(c,'File type: "'.concat(h.type,'", assemblyId: "').concat(y._id,'"')),e.next=25,this.addRefSeqIntoDb(h,y._id.toString(),t);case 25:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new s({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),s}(rr.FromFileBaseChange);vs.AddAssemblyFromFileChange=bs;var ws={},Ss={};Object.defineProperty(Ss,"__esModule",{value:!0}),Ss.DeleteFeatureChange=void 0,Ss.isDeleteFeatureChange=function(e){return"DeleteFeatureChange"===e.typeName};var xs=ws,Es=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","DeleteFeatureChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,deletedFeature:o.deletedFeature,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l=this;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,o=this.logger,a=_e(this.changes),e.prev=3,s=J().mark((function e(){var t,a,s,c,u,f,d,p,h;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return s=(a=i.value).deletedFeature,c=a.parentFeatureId,e.next=4,n.findOne({allIds:s._id}).session(r).exec();case 4:if(u=e.sent){e.next=9;break}throw f="*** ERROR: The following featureId was not found in database ='".concat(s._id,"'"),o.error(f),new Error(f);case 9:if(!u._id.equals(s._id)){e.next=16;break}if(!c){e.next=12;break}throw new Error('Feature "'.concat(s._id,'" is top-level, but received a parent feature ID'));case 12:return e.next=14,n.findByIdAndDelete(u._id);case 14:return null===(d=o.debug)||void 0===d||d.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(u._id,'". Whole document deleted.')),e.abrupt("return",1);case 16:return(p=l.findAndDeleteChildFeature(u,s._id)).push(s._id),u.allIds=u.allIds.filter((function(e){return!p.includes(e)})),u.markModified("children"),e.prev=20,e.next=23,u.save();case 23:e.next=29;break;case 25:throw e.prev=25,e.t0=e.catch(20),null===(h=o.debug)||void 0===h||h.call(o,"*** FAILED: ".concat(e.t0)),e.t0;case 29:null===(t=o.debug)||void 0===t||t.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(u._id,'"'));case 30:case"end":return e.stop()}}),e,null,[[20,25]])})),a.s();case 6:if((i=a.n()).done){e.next=12;break}return e.delegateYield(s(),"t0",8);case 8:if(!e.t0){e.next=10;break}return e.abrupt("continue",10);case 10:e.next=6;break;case 12:e.next=17;break;case 14:e.prev=14,e.t1=e.catch(3),a.e(e.t1);case 17:return e.prev=17,a.f(),e.finish(17);case 20:case"end":return e.stop()}}),e,this,[[3,14,17,20]])}))),function(e){return r.apply(this,arguments)})},{key:"findAndDeleteChildFeature",value:function(e,t){if(!e.children)throw new Error("Feature ".concat(e._id," has no children"));var n=e._id,r=e.children,o=r.get(t);if(o){var a=this.getChildFeatureIds(o);return r.delete(t),a}var i,s=_e(r);try{for(s.s();!(i=s.n()).done;){var l=fe(i.value,2)[1];try{return this.findAndDeleteChildFeature(l,t)}catch(e){}}}catch(e){s.e(e)}finally{s.f()}throw new Error('Feature "'.concat(t,'" not found in ').concat(n))}},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=_e(this.changes),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=18;break}if(a=(o=r.value).deletedFeature,!(i=o.parentFeatureId)){e.next=15;break}if(s=t.getFeature(i)){e.next=12;break}throw new Error('Could not find parent feature "'.concat(i,'"'));case 12:s.deleteChild(a._id),e.next=16;break;case 15:t.getFeature(a._id)&&t.deleteFeature(a._id);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),n.e(e.t0);case 23:return e.prev=23,n.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=pe(this.changedIds).reverse(),a=pe(n).reverse().map((function(e){return{addedFeature:e.deletedFeature,parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(a),"'")),new xs.AddFeatureChange({changedIds:o,typeName:"AddFeatureChange",changes:a,assembly:t},{logger:r})}}]),a}(or.FeatureChange);Ss.DeleteFeatureChange=Es,Object.defineProperty(ws,"__esModule",{value:!0}),ws.AddFeatureChange=void 0,ws.isAddFeatureChange=function(e){return"AddFeatureChange"===e.typeName};var ks=Ss,As=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","AddFeatureChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,addedFeature:o.addedFeature,parentFeatureId:o.parentFeatureId,copyFeature:o.copyFeature,allIds:o.allIds}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b,w,S,x,E,k,A,O,C,N,R,T,I,P,M,F,j,L;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return o=t.assemblyModel,a=t.featureModel,i=t.refSeqModel,s=t.session,l=t.user,c=this.assembly,u=this.changes,f=this.logger,e.next=4,o.findById(c).session(s).exec();case 4:if(e.sent){e.next=9;break}throw d='*** ERROR: Assembly with id "'.concat(c,'" not found'),f.error(d),new Error(d);case 9:p=0,null===(n=f.debug)||void 0===n||n.call(f,"changes: ".concat(JSON.stringify(u))),h=_e(u),e.prev=12,h.s();case 14:if((m=h.n()).done){e.next=64;break}return y=m.value,null===(g=f.debug)||void 0===g||g.call(f,"change: ".concat(JSON.stringify(y))),_=y.allIds,b=y.copyFeature,w=y.parentFeatureId,S=(v=y.addedFeature)._id,x=v.refSeq,e.next=21,i.findById(x).session(s).exec();case 21:if(e.sent){e.next=24;break}throw new Error('RefSeq was not found by assembly "'.concat(c,'" and seq_id "').concat(x,'" not found'));case 24:if(!b){e.next=34;break}return e.next=27,a.create([V(V({},v),{},{allIds:_,status:-1,user:l})],{session:s});case 27:k=fe(e.sent,1),A=k[0],null===(E=f.debug)||void 0===E||E.call(f,'Copied feature, docId "'.concat(A._id,'" to assembly "').concat(c,'"')),p++,e.next=61;break;case 34:if(!w){e.next=53;break}return e.next=37,a.findOne({allIds:w}).session(s).exec();case 37:if(N=e.sent){e.next=40;break}throw new Error('Could not find feature with ID "'.concat(w,'"'));case 40:if(R=this.getFeatureFromId(N,w)){e.next=43;break}throw new Error('Could not find feature with ID "'.concat(w,'" in feature "').concat(N._id,'"'));case 43:return R.children||(R.children=new Map),null!==(O=R.attributes)&&void 0!==O&&O._id||((T=R.attributes)||(T={}),T=V({_id:[R._id.toString()]},JSON.parse(JSON.stringify(T))),R.attributes=T),R.children.set(S,V(V({allIds:[]},v),{},{_id:S})),R.children=new Map(pe(R.children.entries()).sort((function(e,t){return e[1].min-t[1].min}))),I=this.getChildFeatureIds(v),(C=N.allIds).push.apply(C,[S].concat(pe(I))),e.next=51,N.save();case 51:e.next=61;break;case 53:return M=this.getChildFeatureIds(v),F=[S].concat(pe(M)),e.next=57,a.create([V({allIds:F,status:0},v)],{session:s});case 57:j=fe(e.sent,1),L=j[0],null===(P=f.verbose)||void 0===P||P.call(f,'Added docId "'.concat(L._id,'"'));case 61:p++;case 62:e.next=14;break;case 64:e.next=69;break;case 66:e.prev=66,e.t0=e.catch(12),h.e(e.t0);case 69:return e.prev=69,h.f(),e.finish(69);case 72:null===(r=f.debug)||void 0===r||r.call(f,"Added ".concat(p," new feature(s) into database."));case 73:case"end":return e.stop()}}),e,this,[[12,66,69,72]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s,l;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=this.assembly,r=_e(this.changes),e.prev=4,r.s();case 6:if((o=r.n()).done){e.next=20;break}if(i=(a=o.value).addedFeature,!(s=a.parentFeatureId)){e.next=17;break}if(l=t.getFeature(s)){e.next=13;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 13:l.attributes.get("_id")||l.setAttribute("_id",[l._id]),l.addChild(i),e.next=18;break;case 17:t.addFeature(n,i);case 18:e.next=6;break;case 20:e.next=25;break;case 22:e.prev=22,e.t0=e.catch(4),r.e(e.t0);case 25:return e.prev=25,r.f(),e.finish(25);case 28:case"end":return e.stop()}}),e,this,[[4,22,25,28]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=pe(this.changedIds).reverse(),o=pe(t).reverse().map((function(e){return{deletedFeature:e.addedFeature,parentFeatureId:e.parentFeatureId}}));return new ks.DeleteFeatureChange({changedIds:r,typeName:"DeleteFeatureChange",changes:o,assembly:e},{logger:n})}}]),a}(or.FeatureChange);ws.AddFeatureChange=As;var Os={};Object.defineProperty(Os,"__esModule",{value:!0}),Os.AddFeaturesFromFileChange=void 0;var Cs=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n,r;return X(this,a),te(le(r=o.call(this,e,t)),"typeName","AddFeaturesFromFileChange"),te(le(r),"changes",void 0),te(le(r),"deleteExistingFeatures",!1),r.deleteExistingFeatures=null!==(n=e.deleteExistingFeatures)&&void 0!==n&&n,r.changes="changes"in e?e.changes:[e],r}return ee(a,[{key:"notification",get:function(){return"Features have been added. To see them, please refresh the page."}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.deleteExistingFeatures,r=this.typeName;return 1===t.length?{typeName:r,assembly:e,fileId:fe(t,1)[0].fileId,deleteExistingFeatures:n}:{typeName:r,assembly:e,changes:t,deleteExistingFeatures:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=t.fileModel,o=t.filesService,a=this.changes,i=this.logger,!this.deleteExistingFeatures){e.next=5;break}return e.next=5,this.removeExistingFeatures(t);case 5:s=_e(a),e.prev=6,s.s();case 8:if((l=s.n()).done){e.next=56;break}if(u=l.value.fileId,Lt.env.FILE_UPLOAD_FOLDER){e.next=14;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 14:return e.next=16,r.findById(u).exec();case 16:if(f=e.sent){e.next=19;break}throw new Error('File "'.concat(u,'" not found in Mongo'));case 19:null===(c=i.debug)||void 0===c||c.call(i,'FileId "'.concat(u,'", checksum "').concat(f.checksum,'"')),d=o.parseGFF3(o.getFileStream(f)),p=0,h=!1,m=!1,e.prev=24,y=G(d);case 26:return e.next=28,y.next();case 28:if(!(h=!(v=e.sent).done)){e.next=38;break}return _=v.value,e.next=33,this.addFeatureIntoDb(_,t);case 33:++p%1e3==0&&(null===(b=i.debug)||void 0===b||b.call(i,"Processed ".concat(p," features")));case 35:h=!1,e.next=26;break;case 38:e.next=44;break;case 40:e.prev=40,e.t0=e.catch(24),m=!0,g=e.t0;case 44:if(e.prev=44,e.prev=45,!h||null==y.return){e.next=49;break}return e.next=49,y.return();case 49:if(e.prev=49,!m){e.next=52;break}throw g;case 52:return e.finish(49);case 53:return e.finish(44);case 54:e.next=8;break;case 56:e.next=61;break;case 58:e.prev=58,e.t1=e.catch(6),s.e(e.t1);case 61:return e.prev=61,s.f(),e.finish(61);case 64:null===(n=i.debug)||void 0===n||n.call(i,"New features added into database!");case 65:case"end":return e.stop()}}),e,this,[[6,58,61,64],[24,40,44,54],[45,,49,53]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),a}(rr.FromFileBaseChange);Os.AddFeaturesFromFileChange=Cs;var Ns={};Object.defineProperty(Ns,"__esModule",{value:!0}),Ns.AddRefSeqAliasesChange=void 0;var Rs=O.default,Ts=function(e){ne(r,e);var t,n=ce(r);function r(e,t){var o;return X(this,r),te(le(o=n.call(this,e,t)),"typeName","AddRefSeqAliasesChange"),te(le(o),"refSeqAliases",void 0),o.refSeqAliases=e.refSeqAliases,o}return ee(r,[{key:"executeOnClient",value:function(e){var t=(0,Rs.getSession)(e).assemblyManager.get(this.assembly);if(!t)throw new Error("assembly ".concat(this.assembly," not found"));var n=t.refNameAliases,r=t.lowerCaseRefNameAliases;if(!n||!r)throw new Error("Session refNameAliases not found in assembly");var o,a=_e(this.refSeqAliases);try{for(a.s();!(o=a.n()).done;){var i,s=o.value,l=s.refName,c=_e(s.aliases);try{for(c.s();!(i=c.n()).done;){var u=i.value;n[u]=l,r[u.toLowerCase()]=l}}catch(e){c.e(e)}finally{c.f()}}}catch(e){a.e(e)}finally{a.f()}return t.setRefNameAliases(n,r),Promise.resolve()}},{key:"getInverse",value:function(){throw new Error("Method not implemented.")}},{key:"toJSON",value:function(){return{assembly:this.assembly,typeName:this.typeName,refSeqAliases:this.refSeqAliases}}},{key:"executeOnServer",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.refSeqModel,r=t.session,o=this.assembly,a=this.logger,i=_e(this.refSeqAliases),e.prev=3,i.s();case 5:if((s=i.n()).done){e.next=13;break}return c=s.value,null===(l=a.debug)||void 0===l||l.call(a,"Updating Refname alias for assembly: ".concat(o,", refSeqAlias: ").concat(JSON.stringify(c))),u=c.aliases,f=c.refName,e.next=11,n.updateOne({assembly:o,name:f},{$set:{aliases:u}}).session(r);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),i.e(e.t0);case 18:return e.prev=18,i.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:function(e){throw new Error("Method not implemented.")}},{key:"notification",get:function(){return"RefSeq aliases have been added."}}]),r}(or.AssemblySpecificChange);Ns.AddRefSeqAliasesChange=Ts;var Is={};Object.defineProperty(Is,"__esModule",{value:!0}),Is.DeleteAssemblyChange=void 0;var Ps=O.default,Ms=function(e){ne(a,e);var t,n,r,o=ce(a);function a(){var e;X(this,a);for(var t=arguments.length,n=new Array(t),r=0;r<t;r++)n[r]=arguments[r];return te(le(e=o.call.apply(o,[this].concat(n))),"typeName","DeleteAssemblyChange"),e}return ee(a,[{key:"notification",get:function(){return'Assembly "'.concat(this.assembly,'" deleted successfully.')}},{key:"toJSON",value:function(){return{typeName:this.typeName,assembly:this.assembly}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return r=t.assemblyModel,o=t.featureModel,a=t.refSeqChunkModel,i=t.refSeqModel,s=t.session,l=this.assembly,c=this.logger,e.next=4,r.findById(l).session(s).exec();case 4:if(e.sent){e.next=9;break}throw u='*** ERROR: Assembly with id "'.concat(l,'" not found'),c.error(u),new Error(u);case 9:return e.next=11,i.find({assembly:l}).exec();case 11:return f=e.sent.map((function(e){return e._id})),e.next=15,a.deleteMany({refSeq:f}).exec();case 15:return e.next=17,o.deleteMany({refSeq:f}).exec();case 17:return e.next=19,i.deleteMany({assembly:l}).exec();case 19:return e.next=21,r.findByIdAndDelete(l).exec();case 21:null===(n=c.debug)||void 0===n||n.call(c,'Assembly "'.concat(l,'" deleted from database.'));case 22:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(o=this.assembly,t){e.next=3;break}throw new Error("No data store");case 3:return a=(0,Ps.getSession)(t),t.assemblies.has(o)&&t.deleteAssembly(o),e.next=7,null===(n=a.removeAssembly)||void 0===n?void 0:n.call(a,o);case 7:return e.next=9,null===(r=a.removeSessionAssembly)||void 0===r?void 0:r.call(a,o);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:"DeleteAssemblyChange",assembly:this.assembly},{logger:this.logger})}}]),a}(or.AssemblySpecificChange);Is.DeleteAssemblyChange=Ms;var Fs={};Object.defineProperty(Fs,"__esModule",{value:!0}),Fs.DeleteUserChange=void 0;var js=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","DeleteUserChange"),te(le(n),"changes",void 0),te(le(n),"userId",void 0),n.changes="changes"in e?e.changes:[e],n.userId=e.userId,n}return ee(a,[{key:"toJSON",value:function(){return{typeName:this.typeName,userId:this.userId}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n=t.session,r=t.userModel,o=this.logger,a=this.userId,e.next=4,r.findOneAndDelete({_id:a}).session(n).exec();case 4:if(e.sent){e.next=9;break}throw i='*** ERROR: User with id "'.concat(a,'" not found'),o.error(i),new Error(i);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:this.typeName,userId:this.userId},{logger:this.logger})}}]),a}(or.Change);Fs.DeleteUserChange=js;var Ls={};Object.defineProperty(Ls,"__esModule",{value:!0}),Ls.FeatureAttributeChange=void 0,Ls.isFeatureAttributeChange=function(e){return"FeatureAttributeChange"===e.typeName};var Ds=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","FeatureAttributeChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,attributes:o.attributes}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b,w,S;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,i=[],s=_e(o=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=26;break}return f=l.value.featureId,e.next=11,n.findOne({allIds:f}).session(r).exec();case 11:if(d=e.sent){e.next=16;break}throw p="*** ERROR: The following featureId was not found in database ='".concat(f,"'"),a.error(p),new Error(p);case 16:if(null===(c=a.debug)||void 0===c||c.call(a,"*** Feature found: ".concat(JSON.stringify(d))),h=this.getFeatureFromId(d,f)){e.next=22;break}throw a.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:null===(u=a.debug)||void 0===u||u.call(a,"*** Found feature: ".concat(JSON.stringify(h))),i.push({feature:h,topLevelFeature:d});case 24:e.next=6;break;case 26:e.next=31;break;case 28:e.prev=28,e.t0=e.catch(4),s.e(e.t0);case 31:return e.prev=31,s.f(),e.finish(31);case 34:m=_e(o.entries()),e.prev=35,m.s();case 37:if((g=m.n()).done){e.next=55;break}return v=fe(g.value,2),w=(_=i[v[0]]).topLevelFeature,(b=_.feature).attributes=v[1].attributes,w._id.equals(b._id)?w.markModified("attributes"):w.markModified("children"),e.prev=43,e.next=46,w.save();case 46:e.next=52;break;case 48:throw e.prev=48,e.t1=e.catch(43),null===(S=a.debug)||void 0===S||S.call(a,"*** FAILED: ".concat(e.t1)),e.t1;case 52:null===(y=a.debug)||void 0===y||y.call(a,"*** Feature attributes modified (added, edited or deleted), docId: ".concat(JSON.stringify(w)));case 53:e.next=37;break;case 55:e.next=60;break;case 57:e.prev=57,e.t2=e.catch(35),m.e(e.t2);case 60:return e.prev=60,m.f(),e.finish(60);case 63:case"end":return e.stop()}}),e,this,[[4,28,31,34],[35,57,60,63],[43,48]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("applyToLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=_e(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=fe(r.value,2),a=o[0],s=t.getFeature(i=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 10:s.setAttributes(new Map(Object.entries(this.changes[a].attributes)));case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger;return new a({changedIds:pe(this.changedIds).reverse(),typeName:"FeatureAttributeChange",changes:pe(t).reverse().map((function(e){return{featureId:e.featureId,attributes:e.attributes}})),assembly:e},{logger:n})}}]),a}(or.FeatureChange);Ls.FeatureAttributeChange=Ds;var qs={},Bs=["__v","_id","assemblies","internetAccounts","plugins","tracks"];function Us(e){var t=e.assemblies,n=e.internetAccounts,r=e.plugins,o=e.tracks,a=function(e,t){if(null==e)return{};var n,r,o=function(e,t){if(null==e)return{};var n,r,o={},a=Object.keys(e);for(r=0;r<a.length;r++)t.indexOf(n=a[r])>=0||(o[n]=e[n]);return o}(e,t);if(Object.getOwnPropertySymbols){var a=Object.getOwnPropertySymbols(e);for(r=0;r<a.length;r++)t.indexOf(n=a[r])>=0||Object.prototype.propertyIsEnumerable.call(e,n)&&(o[n]=e[n])}return o}(e,Bs),i=null==t?void 0:t.filter((function(e){return"ApolloSequenceAdapter"!==e.sequence.adapter.type})),s=null==o?void 0:o.filter((function(e){return"ApolloTrack"!==e.type})),l=null==r?void 0:r.filter((function(e){return"Apollo"!==e.name})),c=null==n?void 0:n.filter((function(e){return"ApolloInternetAccount"!==e.type})),u=a;return i&&(u.assemblies=i),s&&(u.tracks=s),l&&(u.plugins=l),c&&(u.internetAccounts=c),u}Object.defineProperty(qs,"__esModule",{value:!0}),qs.ImportJBrowseConfigChange=void 0,qs.filterJBrowseConfig=Us;var zs=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","ImportJBrowseConfigChange"),te(le(n),"oldJBrowseConfig",void 0),te(le(n),"newJBrowseConfig",void 0),n.oldJBrowseConfig=e.oldJBrowseConfig,n.newJBrowseConfig=e.newJBrowseConfig,n}return ee(a,[{key:"toJSON",value:function(){return{typeName:this.typeName,oldJBrowseConfig:this.oldJBrowseConfig,newJBrowseConfig:this.newJBrowseConfig}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return r=t.jbrowseConfigModel,o=this.logger,a=this.newJBrowseConfig,e.next=4,r.deleteMany();case 4:if(a){e.next=6;break}return e.abrupt("return");case 6:return i=Us(a),e.next=9,r.create(i);case 9:null===(n=o.debug)||void 0===n||n.call(o,"Stored new JBrowse Config");case 10:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:this.newJBrowseConfig,newJBrowseConfig:this.oldJBrowseConfig},{logger:this.logger})}}]),a}(or.Change);qs.ImportJBrowseConfigChange=zs;var Gs={};Object.defineProperty(Gs,"__esModule",{value:!0}),Gs.LocationEndChange=void 0,Gs.isLocationEndChange=function(e){return"LocationEndChange"===e.typeName};var Hs=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","LocationEndChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldEnd:o.oldEnd,newEnd:o.newEnd}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,_,b,w,S,x,E,k,A,O,C,N;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,i=[],s=_e(o=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=49;break}return d=(f=l.value).featureId,p=f.oldEnd,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(h=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),a.error(m),new Error(m);case 16:if(null===(c=a.debug)||void 0===c||c.call(a,"*** TOP level feature found: ".concat(JSON.stringify(h))),g=this.getFeatureFromId(h,d)){e.next=22;break}throw a.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(u=a.debug)||void 0===u||u.call(a,"*** Found feature: ".concat(JSON.stringify(g))),g.max!==p){e.next=27;break}i.push({feature:g,topLevelFeature:h}),e.next=47;break;case 27:if(!g.children){e.next=47;break}y=_e(g.children),e.prev=29,y.s();case 31:if((v=y.n()).done){e.next=39;break}if(_=fe(v.value,2),(b=_[1]).max!==p){e.next=37;break}return null===(w=a.debug)||void 0===w||w.call(a,"*************** UPDATE CHILD FEATURE ID= ".concat(d,", CHILD: ").concat(JSON.stringify(b))),i.push({feature:b,topLevelFeature:h}),e.abrupt("break",39);case 37:e.next=31;break;case 39:e.next=44;break;case 41:e.prev=41,e.t0=e.catch(29),y.e(e.t0);case 44:return e.prev=44,y.f(),e.finish(44);case 47:e.next=6;break;case 49:e.next=54;break;case 51:e.prev=51,e.t1=e.catch(4),s.e(e.t1);case 54:return e.prev=54,s.f(),e.finish(54);case 57:S=_e(o.entries()),e.prev=58,S.s();case 60:if((x=S.n()).done){e.next=78;break}return k=fe(x.value,2),C=(A=i[k[0]]).topLevelFeature,(O=A.feature).max=k[1].newEnd,C._id.equals(O._id)?C.markModified("end"):C.markModified("children"),e.prev=66,e.next=69,C.save();case 69:e.next=75;break;case 71:throw e.prev=71,e.t2=e.catch(66),null===(N=a.debug)||void 0===N||N.call(a,"*** FAILED: ".concat(e.t2)),e.t2;case 75:null===(E=a.debug)||void 0===E||E.call(a,"*** Object updated in Mongo. 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New object: ".concat(JSON.stringify(E)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=_e(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=fe(r.value,2),a=o[0],s=t.getFeature(i=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier 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ee(a,[{key:"toJSON",value:function(){var e=this.changes,t=this.typeName,n=this.userId;return 1===e.length?{typeName:t,userId:n,role:fe(e,1)[0].role}:{typeName:t,userId:n,changes:e}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.session,r=t.userModel,a=this.logger,i=this.userId,s=_e(o=this.changes),e.prev=3,s.s();case 5:if((l=s.n()).done){e.next=18;break}return u=l.value,null===(c=a.debug)||void 0===c||c.call(a,"change: ".concat(JSON.stringify(o))),f=u.role,e.next=11,r.findByIdAndUpdate(i,{role:f}).session(n).exec();case 11:if(e.sent){e.next=16;break}throw d='*** ERROR: User with id "'.concat(i,'" not found'),a.error(d),new Error(d);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),s.e(e.t0);case 23:return e.prev=23,s.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:this.typeName,changes:this.changes,userId:this.userId},{logger:this.logger})}}]),a}(or.Change);Zs.UserChange=Xs,function(e){Object.defineProperty(e,"__esModule",{value:!0}),e.changes=void 0;var 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n=this,r=this.request({method:"POST",data:e});r.on("success",t),r.on("error",(function(e,t){n.onError("xhr post error",e,t)}))}},{key:"doPoll",value:function(){var e=this,t=this.request();t.on("data",this.onData.bind(this)),t.on("error",(function(t,n){e.onError("xhr poll error",t,n)})),this.pollXhr=t}}]),n}(Nc),Uc=function(e){ne(n,e);var t=ce(n);function n(e,r){var o;return X(this,n),Ac(le(o=t.call(this)),r),o.opts=r,o.method=r.method||"GET",o.uri=e,o.data=void 0!==r.data?r.data:null,o.create(),o}return ee(n,[{key:"create",value:function(){var e,t=this,r=xc(this.opts,"agent","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","autoUnref");r.xdomain=!!this.opts.xd;var o=this.xhr=new Lc(r);try{o.open(this.method,this.uri,!0);try{if(this.opts.extraHeaders)for(var a in o.setDisableHeaderCheck&&o.setDisableHeaderCheck(!0),this.opts.extraHeaders)this.opts.extraHeaders.hasOwnProperty(a)&&o.setRequestHeader(a,this.opts.extraHeaders[a])}catch(e){}if("POST"===this.method)try{o.setRequestHeader("Content-type","text/plain;charset=UTF-8")}catch(e){}try{o.setRequestHeader("Accept","*/*")}catch(e){}null===(e=this.opts.cookieJar)||void 0===e||e.addCookies(o),"withCredentials"in o&&(o.withCredentials=this.opts.withCredentials),this.opts.requestTimeout&&(o.timeout=this.opts.requestTimeout),o.onreadystatechange=function(){var e;3===o.readyState&&(null===(e=t.opts.cookieJar)||void 0===e||e.parseCookies(o)),4===o.readyState&&(200===o.status||1223===o.status?t.onLoad():t.setTimeoutFn((function(){t.onError("number"==typeof o.status?o.status:0)}),0))},o.send(this.data)}catch(e){return void this.setTimeoutFn((function(){t.onError(e)}),0)}"undefined"!=typeof document&&(this.index=n.requestsCount++,n.requests[this.index]=this)}},{key:"onError",value:function(e){this.emitReserved("error",e,this.xhr),this.cleanup(!0)}},{key:"cleanup",value:function(e){if(null!=this.xhr){if(this.xhr.onreadystatechange=Dc,e)try{this.xhr.abort()}catch(e){}"undefined"!=typeof document&&delete n.requests[this.index],this.xhr=null}}},{key:"onLoad",value:function(){var e=this.xhr.responseText;null!==e&&(this.emitReserved("data",e),this.emitReserved("success"),this.cleanup())}},{key:"abort",value:function(){this.cleanup()}}]),n}(wc);function zc(){for(var e in Uc.requests)Uc.requests.hasOwnProperty(e)&&Uc.requests[e].abort()}Uc.requestsCount=0,Uc.requests={},"undefined"!=typeof document&&("function"==typeof attachEvent?attachEvent("onunload",zc):"function"==typeof addEventListener&&addEventListener("onpagehide"in Sc?"pagehide":"unload",zc,!1));var Gc=function(){return"function"==typeof Promise&&"function"==typeof Promise.resolve?function(e){return Promise.resolve().then(e)}:function(e,t){return t(e,0)}}(),Hc=Sc.WebSocket||Sc.MozWebSocket,Wc="undefined"!=typeof navigator&&"string"==typeof navigator.product&&"reactnative"===navigator.product.toLowerCase(),$c=function(e){ne(n,e);var t=ce(n);function n(e){var r;return X(this,n),(r=t.call(this,e)).supportsBinary=!e.forceBase64,r}return ee(n,[{key:"name",get:function(){return"websocket"}},{key:"doOpen",value:function(){if(this.check()){var e=this.uri(),t=this.opts.protocols,n=Wc?{}:xc(this.opts,"agent","perMessageDeflate","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","localAddress","protocolVersion","origin","maxPayload","family","checkServerIdentity");this.opts.extraHeaders&&(n.headers=this.opts.extraHeaders);try{this.ws=Wc?new Hc(e,t,n):t?new Hc(e,t):new Hc(e)}catch(e){return this.emitReserved("error",e)}this.ws.binaryType=this.socket.binaryType,this.addEventListeners()}}},{key:"addEventListeners",value:function(){var e=this;this.ws.onopen=function(){e.opts.autoUnref&&e.ws._socket.unref(),e.onOpen()},this.ws.onclose=function(t){return e.onClose({description:"websocket connection closed",context:t})},this.ws.onmessage=function(t){return e.onData(t.data)},this.ws.onerror=function(t){return e.onError("websocket error",t)}}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;lc(e[r],t.supportsBinary,(function(e){try{t.ws.send(e)}catch(e){}n&&Gc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){void 0!==this.ws&&(this.ws.close(),this.ws=null)}},{key:"uri",value:function(){var e=this.opts.secure?"wss":"ws",t=this.query||{};return this.opts.timestampRequests&&(t[this.opts.timestampParam]=Mc()),this.supportsBinary||(t.b64=1),this.createUri(e,t)}},{key:"check",value:function(){return!!Hc}}]),n}(Nc),Vc=function(e){ne(n,e);var t=ce(n);function n(){return X(this,n),t.apply(this,arguments)}return ee(n,[{key:"name",get:function(){return"webtransport"}},{key:"doOpen",value:function(){var e=this;"function"==typeof WebTransport&&(this.transport=new WebTransport(this.createUri("https"),this.opts.transportOptions[this.name]),this.transport.closed.then((function(){e.onClose()})).catch((function(t){e.onError("webtransport error",t)})),this.transport.ready.then((function(){e.transport.createBidirectionalStream().then((function(t){var n=function(e,t){pc||(pc=new TextDecoder);var n=[],r=0,o=-1,a=!1;return new TransformStream({transform:function(i,s){for(n.push(i);;){if(0===r){if(_c(n)<1)break;var l=bc(n,1);a=128==(128&l[0]),r=(o=127&l[0])<126?3:126===o?1:2}else if(1===r){if(_c(n)<2)break;var c=bc(n,2);o=new DataView(c.buffer,c.byteOffset,c.length).getUint16(0),r=3}else if(2===r){if(_c(n)<8)break;var u=bc(n,8),f=new DataView(u.buffer,u.byteOffset,u.length),d=f.getUint32(0);if(d>Math.pow(2,21)-1){s.enqueue(oc);break}o=d*Math.pow(2,32)+f.getUint32(4),r=3}else{if(_c(n)<o)break;var p=bc(n,o);s.enqueue(mc(a?p:pc.decode(p),t)),r=0}if(0===o||o>e){s.enqueue(oc);break}}}})}(Number.MAX_SAFE_INTEGER,e.socket.binaryType),r=t.readable.pipeThrough(n).getReader(),o=new TransformStream({transform:function(e,t){!function(e,t){ac&&e.data instanceof Blob?e.data.arrayBuffer().then(uc).then(t):ic&&(e.data instanceof ArrayBuffer||sc(e.data))?t(uc(e.data)):lc(e,!1,(function(e){rc||(rc=new TextEncoder),t(rc.encode(e))}))}(e,(function(n){var r,o=n.length;if(o<126)r=new Uint8Array(1),new DataView(r.buffer).setUint8(0,o);else if(o<65536){r=new Uint8Array(3);var a=new DataView(r.buffer);a.setUint8(0,126),a.setUint16(1,o)}else{r=new Uint8Array(9);var i=new DataView(r.buffer);i.setUint8(0,127),i.setBigUint64(1,BigInt(o))}e.data&&"string"!=typeof e.data&&(r[0]|=128),t.enqueue(r),t.enqueue(n)}))}});o.readable.pipeTo(t.writable),e.writer=o.writable.getWriter(),function t(){r.read().then((function(n){n.done||(e.onPacket(n.value),t())})).catch((function(e){}))}();var a={type:"open"};e.query.sid&&(a.data='{"sid":"'.concat(e.query.sid,'"}')),e.writer.write(a).then((function(){return e.onOpen()}))}))})))}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;t.writer.write(e[r]).then((function(){n&&Gc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){var e;null===(e=this.transport)||void 0===e||e.close()}}]),n}(Nc),Jc={websocket:$c,webtransport:Vc,polling:Bc},Yc=/^(?:(?![^:@\/?#]+:[^:@\/]*@)(http|https|ws|wss):\/\/)?((?:(([^:@\/?#]*)(?::([^:@\/?#]*))?)?@)?((?:[a-f0-9]{0,4}:){2,7}[a-f0-9]{0,4}|[^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/,Kc=["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"];function Zc(e){var t,n,r=e,o=e.indexOf("["),a=e.indexOf("]");-1!=o&&-1!=a&&(e=e.substring(0,o)+e.substring(o,a).replace(/:/g,";")+e.substring(a,e.length));for(var i,s=Yc.exec(e||""),l={},c=14;c--;)l[Kc[c]]=s[c]||"";return-1!=o&&-1!=a&&(l.source=r,l.host=l.host.substring(1,l.host.length-1).replace(/;/g,":"),l.authority=l.authority.replace("[","").replace("]","").replace(/;/g,":"),l.ipv6uri=!0),l.pathNames=(n=(t=l.path).replace(/\/{2,9}/g,"/").split("/"),"/"!=t.slice(0,1)&&0!==t.length||n.splice(0,1),"/"==t.slice(-1)&&n.splice(n.length-1,1),n),l.queryKey=(i={},l.query.replace(/(?:^|&)([^&=]*)=?([^&]*)/g,(function(e,t,n){t&&(i[t]=n)})),i),l}var Xc=function(e){ne(n,e);var t=ce(n);function n(e){var r,o=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{};return X(this,n),(r=t.call(this)).binaryType="arraybuffer",r.writeBuffer=[],e&&"object"===Y(e)&&(o=e,e=null),e?(e=Zc(e),o.hostname=e.host,o.secure="https"===e.protocol||"wss"===e.protocol,o.port=e.port,e.query&&(o.query=e.query)):o.host&&(o.hostname=Zc(o.host).host),Ac(le(r),o),r.secure=null!=o.secure?o.secure:"undefined"!=typeof location&&"https:"===location.protocol,o.hostname&&!o.port&&(o.port=r.secure?"443":"80"),r.hostname=o.hostname||("undefined"!=typeof location?location.hostname:"localhost"),r.port=o.port||("undefined"!=typeof location&&location.port?location.port:r.secure?"443":"80"),r.transports=o.transports||["polling","websocket","webtransport"],r.writeBuffer=[],r.prevBufferLen=0,r.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},o),r.opts.path=r.opts.path.replace(/\/$/,"")+(r.opts.addTrailingSlash?"/":""),"string"==typeof r.opts.query&&(r.opts.query=function(e){for(var t={},n=e.split("&"),r=0,o=n.length;r<o;r++){var a=n[r].split("=");t[decodeURIComponent(a[0])]=decodeURIComponent(a[1])}return t}(r.opts.query)),r.id=null,r.upgrades=null,r.pingInterval=null,r.pingTimeout=null,r.pingTimeoutTimer=null,"function"==typeof addEventListener&&(r.opts.closeOnBeforeunload&&(r.beforeunloadEventListener=function(){r.transport&&(r.transport.removeAllListeners(),r.transport.close())},addEventListener("beforeunload",r.beforeunloadEventListener,!1)),"localhost"!==r.hostname&&(r.offlineEventListener=function(){r.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",r.offlineEventListener,!1))),r.open(),r}return ee(n,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new Jc[e](n)}},{key:"open",value:function(){var e,t=this;if(this.opts.rememberUpgrade&&n.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){t.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var t=this,r=this.createTransport(e),o=!1;n.priorWebsocketSuccess=!1;var a=function(){o||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!o)if("pong"===e.type&&"probe"===e.data){if(t.upgrading=!0,t.emitReserved("upgrading",r),!r)return;n.priorWebsocketSuccess="websocket"===r.name,t.transport.pause((function(){o||"closed"!==t.readyState&&(f(),t.setTransport(r),r.send([{type:"upgrade"}]),t.emitReserved("upgrade",r),r=null,t.upgrading=!1,t.flush())}))}else{var a=new Error("probe error");a.transport=r.name,t.emitReserved("upgradeError",a)}})))};function i(){o||(o=!0,f(),r.close(),r=null)}var s=function(e){var n=new Error("probe error: "+e);n.transport=r.name,i(),t.emitReserved("upgradeError",n)};function l(){s("transport closed")}function c(){s("socket closed")}function u(e){r&&e.name!==r.name&&i()}var f=function(){r.removeListener("open",a),r.removeListener("error",s),r.removeListener("close",l),t.off("close",c),t.off("upgrading",u)};r.once("open",a),r.once("error",s),r.once("close",l),this.once("close",c),this.once("upgrading",u),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){o||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",n.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,t=this.upgrades.length;e<t;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,o=e.length;r<o;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var o={type:e,data:t,options:n};this.emitReserved("packetCreate",o),this.writeBuffer.push(o),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced close"),e.transport.close()},n=function n(){e.off("upgrade",n),e.off("upgradeError",n),t()},r=function(){e.once("upgrade",n),e.once("upgradeError",n)};return"opening"!==this.readyState&&"open"!==this.readyState||(this.readyState="closing",this.writeBuffer.length?this.once("drain",(function(){e.upgrading?r():t()})):this.upgrading?r():t()),this}},{key:"onError",value:function(e){n.priorWebsocketSuccess=!1,this.emitReserved("error",e),this.onClose("transport error",e)}},{key:"onClose",value:function(e,t){"opening"!==this.readyState&&"open"!==this.readyState&&"closing"!==this.readyState||(this.clearTimeoutFn(this.pingTimeoutTimer),this.transport.removeAllListeners("close"),this.transport.close(),this.transport.removeAllListeners(),"function"==typeof removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}]),n}(wc);Xc.protocol=4;var Qc="function"==typeof ArrayBuffer,eu=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},tu=Object.prototype.toString,nu="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===tu.call(Blob),ru="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===tu.call(File);function ou(e){return Qc&&(e instanceof ArrayBuffer||eu(e))||nu&&e instanceof Blob||ru&&e instanceof File}function au(e,t){if(!e||"object"!==Y(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(au(e[n]))return!0;return!1}if(ou(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return au(e.toJSON(),!0);for(var o in e)if(Object.prototype.hasOwnProperty.call(e,o)&&au(e[o]))return!0;return!1}function iu(e){var t=[],n=e;return n.data=su(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function su(e,t){if(!e)return e;if(ou(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),o=0;o<e.length;o++)r[o]=su(e[o],t);return r}if("object"===Y(e)&&!(e instanceof Date)){var a={};for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(a[i]=su(e[i],t));return a}return e}function lu(e,t){return e.data=cu(e.data,t),delete e.attachments,e}function cu(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=cu(e[n],t);else if("object"===Y(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=cu(e[r],t));return e}var uu,fu=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(uu||(uu={}));var du=function(){function e(t){X(this,e),this.replacer=t}return ee(e,[{key:"encode",value:function(e){return e.type!==uu.EVENT&&e.type!==uu.ACK||!au(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===uu.EVENT?uu.BINARY_EVENT:uu.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==uu.BINARY_EVENT&&e.type!==uu.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=iu(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}]),e}();function pu(e){return"[object Object]"===Object.prototype.toString.call(e)}var hu=function(e){ne(n,e);var t=ce(n);function n(e){var r;return X(this,n),(r=t.call(this)).reviver=e,r}return ee(n,[{key:"add",value:function(e){var t;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(t=this.decodeString(e)).type===uu.BINARY_EVENT;r||t.type===uu.BINARY_ACK?(t.type=r?uu.EVENT:uu.ACK,this.reconstructor=new mu(t),0===t.attachments&&ue(re(n.prototype),"emitReserved",this).call(this,"decoded",t)):ue(re(n.prototype),"emitReserved",this).call(this,"decoded",t)}else{if(!ou(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(t=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,ue(re(n.prototype),"emitReserved",this).call(this,"decoded",t))}}},{key:"decodeString",value:function(e){var t=0,r={type:Number(e.charAt(0))};if(void 0===uu[r.type])throw new Error("unknown packet type "+r.type);if(r.type===uu.BINARY_EVENT||r.type===uu.BINARY_ACK){for(var o=t+1;"-"!==e.charAt(++t)&&t!=e.length;);var a=e.substring(o,t);if(a!=Number(a)||"-"!==e.charAt(t))throw new Error("Illegal attachments");r.attachments=Number(a)}if("/"===e.charAt(t+1)){for(var i=t+1;++t&&","!==e.charAt(t)&&t!==e.length;);r.nsp=e.substring(i,t)}else r.nsp="/";var s=e.charAt(t+1);if(""!==s&&Number(s)==s){for(var l=t+1;++t;){var c=e.charAt(t);if(null==c||Number(c)!=c){--t;break}if(t===e.length)break}r.id=Number(e.substring(l,t+1))}if(e.charAt(++t)){var u=this.tryParse(e.substr(t));if(!n.isPayloadValid(r.type,u))throw new Error("invalid payload");r.data=u}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case uu.CONNECT:return pu(t);case uu.DISCONNECT:return void 0===t;case uu.CONNECT_ERROR:return"string"==typeof t||pu(t);case uu.EVENT:case uu.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===fu.indexOf(t[0]));case uu.ACK:case uu.BINARY_ACK:return Array.isArray(t)}}}]),n}(wc),mu=function(){function e(t){X(this,e),this.packet=t,this.buffers=[],this.reconPack=t}return ee(e,[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=lu(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}]),e}(),gu={__proto__:null,protocol:5,get PacketType(){return uu},Encoder:du,Decoder:hu};function yu(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var vu=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),_u=function(e){ne(n,e);var t=ce(n);function n(e,r,o){var a;return X(this,n),(a=t.call(this)).connected=!1,a.recovered=!1,a.receiveBuffer=[],a.sendBuffer=[],a._queue=[],a._queueSeq=0,a.ids=0,a.acks={},a.flags={},a.io=e,a.nsp=r,o&&o.auth&&(a.auth=o.auth),a._opts=Object.assign({},o),a.io._autoConnect&&a.open(),a}return ee(n,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[yu(e,"open",this.onopen.bind(this)),yu(e,"packet",this.onpacket.bind(this)),yu(e,"error",this.onerror.bind(this)),yu(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(vu.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var o={type:uu.EVENT,data:n,options:{}};if(o.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var a=this.ids++,i=n.pop();this._registerAckCallback(a,i),o.id=a}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(o),this.packet(o)):this.sendBuffer.push(o)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,o=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==o){var a=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),o);this.acks[e]=function(){r.io.clearTimeoutFn(a);for(var e=arguments.length,n=new Array(e),o=0;o<e;o++)n[o]=arguments[o];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),o=1;o<n;o++)r[o-1]=arguments[o];var a=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,o){r.push((function(e,t){return a?e?o(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var o=arguments.length,a=new Array(o>1?o-1:0),i=1;i<o;i++)a[i-1]=arguments[i];t.apply(void 0,[null].concat(a))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:uu.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case uu.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case uu.EVENT:case uu.BINARY_EVENT:this.onevent(e);break;case uu.ACK:case uu.BINARY_ACK:this.onack(e);break;case uu.DISCONNECT:this.ondisconnect();break;case uu.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var t,r=_e(this._anyListeners.slice());try{for(r.s();!(t=r.n()).done;)t.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}ue(re(n.prototype),"emit",this).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,o=new Array(r),a=0;a<r;a++)o[a]=arguments[a];t.packet({type:uu.ACK,id:e,data:o})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:uu.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var t=this._anyOutgoingListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyOutgoingListeners=[];return this}},{key:"listenersAnyOutgoing",value:function(){return this._anyOutgoingListeners||[]}},{key:"notifyOutgoingListeners",value:function(e){if(this._anyOutgoingListeners&&this._anyOutgoingListeners.length){var t,n=_e(this._anyOutgoingListeners.slice());try{for(n.s();!(t=n.n()).done;)t.value.apply(this,e.data)}catch(e){n.e(e)}finally{n.f()}}}}]),n}(wc);function bu(e){this.ms=(e=e||{}).min||100,this.max=e.max||1e4,this.factor=e.factor||2,this.jitter=e.jitter>0&&e.jitter<=1?e.jitter:0,this.attempts=0}bu.prototype.duration=function(){var e=this.ms*Math.pow(this.factor,this.attempts++);if(this.jitter){var t=Math.random(),n=Math.floor(t*this.jitter*e);e=0==(1&Math.floor(10*t))?e-n:e+n}return 0|Math.min(e,this.max)},bu.prototype.reset=function(){this.attempts=0},bu.prototype.setMin=function(e){this.ms=e},bu.prototype.setMax=function(e){this.max=e},bu.prototype.setJitter=function(e){this.jitter=e};var wu=function(e){ne(n,e);var t=ce(n);function n(e,r){var o,a;X(this,n),(o=t.call(this)).nsps={},o.subs=[],e&&"object"===Y(e)&&(r=e,e=void 0),(r=r||{}).path=r.path||"/socket.io",o.opts=r,Ac(le(o),r),o.reconnection(!1!==r.reconnection),o.reconnectionAttempts(r.reconnectionAttempts||Infinity),o.reconnectionDelay(r.reconnectionDelay||1e3),o.reconnectionDelayMax(r.reconnectionDelayMax||5e3),o.randomizationFactor(null!==(a=r.randomizationFactor)&&void 0!==a?a:.5),o.backoff=new bu({min:o.reconnectionDelay(),max:o.reconnectionDelayMax(),jitter:o.randomizationFactor()}),o.timeout(null==r.timeout?2e4:r.timeout),o._readyState="closed",o.uri=e;var i=r.parser||gu;return o.encoder=new i.Encoder,o.decoder=new i.Decoder,o._autoConnect=!1!==r.autoConnect,o._autoConnect&&o.open(),o}return ee(n,[{key:"reconnection",value:function(e){return arguments.length?(this._reconnection=!!e,this):this._reconnection}},{key:"reconnectionAttempts",value:function(e){return void 0===e?this._reconnectionAttempts:(this._reconnectionAttempts=e,this)}},{key:"reconnectionDelay",value:function(e){var t;return void 0===e?this._reconnectionDelay:(this._reconnectionDelay=e,null===(t=this.backoff)||void 0===t||t.setMin(e),this)}},{key:"randomizationFactor",value:function(e){var t;return void 0===e?this._randomizationFactor:(this._randomizationFactor=e,null===(t=this.backoff)||void 0===t||t.setJitter(e),this)}},{key:"reconnectionDelayMax",value:function(e){var t;return void 0===e?this._reconnectionDelayMax:(this._reconnectionDelayMax=e,null===(t=this.backoff)||void 0===t||t.setMax(e),this)}},{key:"timeout",value:function(e){return arguments.length?(this._timeout=e,this):this._timeout}},{key:"maybeReconnectOnOpen",value:function(){!this._reconnecting&&this._reconnection&&0===this.backoff.attempts&&this.reconnect()}},{key:"open",value:function(e){var t=this;if(~this._readyState.indexOf("open"))return this;this.engine=new Xc(this.uri,this.opts);var n=this.engine,r=this;this._readyState="opening",this.skipReconnect=!1;var o=yu(n,"open",(function(){r.onopen(),e&&e()})),a=function(n){t.cleanup(),t._readyState="closed",t.emitReserved("error",n),e?e(n):t.maybeReconnectOnOpen()},i=yu(n,"error",a);if(!1!==this._timeout){var s=this.setTimeoutFn((function(){o(),a(new Error("timeout")),n.close()}),this._timeout);this.opts.autoUnref&&s.unref(),this.subs.push((function(){t.clearTimeoutFn(s)}))}return this.subs.push(o),this.subs.push(i),this}},{key:"connect",value:function(e){return this.open(e)}},{key:"onopen",value:function(){this.cleanup(),this._readyState="open",this.emitReserved("open");var e=this.engine;this.subs.push(yu(e,"ping",this.onping.bind(this)),yu(e,"data",this.ondata.bind(this)),yu(e,"error",this.onerror.bind(this)),yu(e,"close",this.onclose.bind(this)),yu(this.decoder,"decoded",this.ondecoded.bind(this)))}},{key:"onping",value:function(){this.emitReserved("ping")}},{key:"ondata",value:function(e){try{this.decoder.add(e)}catch(e){this.onclose("parse error",e)}}},{key:"ondecoded",value:function(e){var t=this;Gc((function(){t.emitReserved("packet",e)}),this.setTimeoutFn)}},{key:"onerror",value:function(e){this.emitReserved("error",e)}},{key:"socket",value:function(e,t){var n=this.nsps[e];return n?this._autoConnect&&!n.active&&n.connect():(n=new _u(this,e,t),this.nsps[e]=n),n}},{key:"_destroy",value:function(e){for(var t=0,n=Object.keys(this.nsps);t<n.length;t++)if(this.nsps[n[t]].active)return;this._close()}},{key:"_packet",value:function(e){for(var t=this.encoder.encode(e),n=0;n<t.length;n++)this.engine.write(t[n],e.options)}},{key:"cleanup",value:function(){this.subs.forEach((function(e){return e()})),this.subs.length=0,this.decoder.destroy()}},{key:"_close",value:function(){this.skipReconnect=!0,this._reconnecting=!1,this.onclose("forced close"),this.engine&&this.engine.close()}},{key:"disconnect",value:function(){return this._close()}},{key:"onclose",value:function(e,t){this.cleanup(),this.backoff.reset(),this._readyState="closed",this.emitReserved("close",e,t),this._reconnection&&!this.skipReconnect&&this.reconnect()}},{key:"reconnect",value:function(){var e=this;if(this._reconnecting||this.skipReconnect)return this;var t=this;if(this.backoff.attempts>=this._reconnectionAttempts)this.backoff.reset(),this.emitReserved("reconnect_failed"),this._reconnecting=!1;else{var n=this.backoff.duration();this._reconnecting=!0;var r=this.setTimeoutFn((function(){t.skipReconnect||(e.emitReserved("reconnect_attempt",t.backoff.attempts),t.skipReconnect||t.open((function(n){n?(t._reconnecting=!1,t.reconnect(),e.emitReserved("reconnect_error",n)):t.onreconnect()})))}),n);this.opts.autoUnref&&r.unref(),this.subs.push((function(){e.clearTimeoutFn(r)}))}}},{key:"onreconnect",value:function(){var e=this.backoff.attempts;this._reconnecting=!1,this.backoff.reset(),this.emitReserved("reconnect",e)}}]),n}(wc),Su={};function xu(e,t){"object"===Y(e)&&(t=e,e=void 0);var n,r=function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:"",n=arguments.length>2?arguments[2]:void 0,r=e;n=n||"undefined"!=typeof location&&location,null==e&&(e=n.protocol+"//"+n.host),"string"==typeof e&&("/"===e.charAt(0)&&(e="/"===e.charAt(1)?n.protocol+e:n.host+e),/^(https?|wss?):\/\//.test(e)||(e=void 0!==n?n.protocol+"//"+e:"https://"+e),r=Zc(e)),r.port||(/^(http|ws)$/.test(r.protocol)?r.port="80":/^(http|ws)s$/.test(r.protocol)&&(r.port="443")),r.path=r.path||"/";var o=-1!==r.host.indexOf(":")?"["+r.host+"]":r.host;return r.id=r.protocol+"://"+o+":"+r.port+t,r.href=r.protocol+"://"+o+(n&&n.port===r.port?"":":"+r.port),r}(e,(t=t||{}).path||"/socket.io"),o=r.source,a=r.id;return t.forceNew||t["force new connection"]||!1===t.multiplex||Su[a]&&r.path in Su[a].nsps?n=new wu(o,t):(Su[a]||(Su[a]=new wu(o,t)),n=Su[a]),r.query&&!t.query&&(t.query=r.queryKey),n.socket(r.path,t)}function Eu(){}function ku(){ku.init.call(this)}function Au(e){return void 0===e._maxListeners?ku.defaultMaxListeners:e._maxListeners}function Ou(e,t,n,r){var o,a,i;if("function"!=typeof n)throw new TypeError('"listener" argument must be a function');if((a=e._events)?(a.newListener&&(e.emit("newListener",t,n.listener?n.listener:n),a=e._events),i=a[t]):(a=e._events=new Eu,e._eventsCount=0),i){if("function"==typeof 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a=Tf(n);a||n.corked||n.bufferProcessing||!n.bufferedRequest||Rf(e,n),r?Et(Nf,e,n,a,o):Nf(e,n,a,o)}}(t,e)},this.writecb=null,this.writelen=0,this.bufferedRequest=null,this.lastBufferedRequest=null,this.pendingcb=0,this.prefinished=!1,this.errorEmitted=!1,this.bufferedRequestCount=0,this.corkedRequestsFree=new Mf(this)}function Of(e){if(!(this instanceof Of||this instanceof Df))return new Of(e);this._writableState=new Af(e,this),this.writable=!0,e&&("function"==typeof e.write&&(this._write=e.write),"function"==typeof e.writev&&(this._writev=e.writev)),ku.call(this)}function Cf(e,t,n,r,o,a,i){t.writelen=r,t.writecb=i,t.writing=!0,t.sync=!0,n?e._writev(o,t.onwrite):e._write(o,a,t.onwrite),t.sync=!1}function Nf(e,t,n,r){n||function(e,t){0===t.length&&t.needDrain&&(t.needDrain=!1,e.emit("drain"))}(e,t),t.pendingcb--,r(),Pf(e,t)}function Rf(e,t){t.bufferProcessing=!0;var n=t.bufferedRequest;if(e._writev&&n&&n.next){var r=new Array(t.bufferedRequestCount),o=t.corkedRequestsFree;o.entry=n;for(var a=0;n;)r[a]=n,n=n.next,a+=1;Cf(e,t,!0,t.length,r,"",o.finish),t.pendingcb++,t.lastBufferedRequest=null,o.next?(t.corkedRequestsFree=o.next,o.next=null):t.corkedRequestsFree=new Mf(t)}else{for(;n;){var i=n.chunk;if(Cf(e,t,!1,t.objectMode?1:i.length,i,n.encoding,n.callback),n=n.next,t.writing)break}null===n&&(t.lastBufferedRequest=null)}t.bufferedRequestCount=0,t.bufferedRequest=n,t.bufferProcessing=!1}function Tf(e){return e.ending&&0===e.length&&null===e.bufferedRequest&&!e.finished&&!e.writing}function If(e,t){t.prefinished||(t.prefinished=!0,e.emit("prefinish"))}function Pf(e,t){var n=Tf(t);return n&&(0===t.pendingcb?(If(e,t),t.finished=!0,e.emit("finish")):If(e,t)),n}function Mf(e){var t=this;this.next=null,this.entry=null,this.finish=function(n){var r=t.entry;for(t.entry=null;r;){var o=r.callback;e.pendingcb--,o(n),r=r.next}e.corkedRequestsFree?e.corkedRequestsFree.next=t:e.corkedRequestsFree=t}}uf.prototype.read=function(e){lf("read",e),e=parseInt(e,10);var t=this._readableState,n=e;if(0!==e&&(t.emittedReadable=!1),0===e&&t.needReadable&&(t.length>=t.highWaterMark||t.ended))return lf("read: emitReadable",t.length,t.ended),0===t.length&&t.ended?wf(this):hf(this),null;if(0===(e=pf(e,t))&&t.ended)return 0===t.length&&wf(this),null;var r,o=t.needReadable;return lf("need readable",o),(0===t.length||t.length-e<t.highWaterMark)&&lf("length less than watermark",o=!0),t.ended||t.reading?lf("reading or ended",o=!1):o&&(lf("do read"),t.reading=!0,t.sync=!0,0===t.length&&(t.needReadable=!0),this._read(t.highWaterMark),t.sync=!1,t.reading||(e=pf(n,t))),null===(r=e>0?bf(e,t):null)?(t.needReadable=!0,e=0):t.length-=e,0===t.length&&(t.ended||(t.needReadable=!0),n!==e&&t.ended&&wf(this)),null!==r&&this.emit("data",r),r},uf.prototype._read=function(e){this.emit("error",new 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".concat(e.description):"","\n").concat(e.sequence,"\n")}function id(e){function t(e){return"attributes"in e?nd(e):"directive"in e?rd(e):"sequence"in e?ad(e):"comment"in e?od(e):"# (invalid item found during format)\n"}return Array.isArray(e)?e.map(t):t(e)}Tu(zf,Df),zf.prototype.push=function(e,t){return this._transformState.needTransform=!1,Df.prototype.push.call(this,e,t)},zf.prototype._transform=function(e,t,n){throw new Error("Not implemented")},zf.prototype._write=function(e,t,n){var r=this._transformState;if(r.writecb=n,r.writechunk=e,r.writeencoding=t,!r.transforming){var o=this._readableState;(r.needTransform||o.needReadable||o.length<o.highWaterMark)&&this._read(o.highWaterMark)}},zf.prototype._read=function(e){var t=this._transformState;null!==t.writechunk&&t.writecb&&!t.transforming?(t.transforming=!0,this._transform(t.writechunk,t.writeencoding,t.afterTransform)):t.needTransform=!0},Tu(Hf,zf),Hf.prototype._transform=function(e,t,n){n(null,e)},Tu(Wf,ku),Wf.Readable=uf,Wf.Writable=Of,Wf.Duplex=Df,Wf.Transform=zf,Wf.PassThrough=Hf,Wf.Stream=Wf,Wf.prototype.pipe=function(e,t){var n=this;function r(t){e.writable&&!1===e.write(t)&&n.pause&&n.pause()}function o(){n.readable&&n.resume&&n.resume()}n.on("data",r),e.on("drain",o),e._isStdio||t&&!1===t.end||(n.on("end",i),n.on("close",s));var a=!1;function i(){a||(a=!0,e.end())}function s(){a||(a=!0,"function"==typeof e.destroy&&e.destroy())}function l(e){if(c(),0===ku.listenerCount(this,"error"))throw e}function c(){n.removeListener("data",r),e.removeListener("drain",o),n.removeListener("end",i),n.removeListener("close",s),n.removeListener("error",l),e.removeListener("error",l),n.removeListener("end",c),n.removeListener("close",c),e.removeListener("close",c)}return n.on("error",l),e.on("error",l),n.on("end",c),n.on("close",c),e.on("close",c),e.emit("pipe",n),e};var sd={__proto__:null,unescape:$f,escape:Jf,escapeColumn:Yf,parseAttributes:Kf,parseFeature:Zf,parseDirective:Xf,formatAttributes:Qf,formatFeature:nd,formatDirective:rd,formatComment:od,formatSequence:ad,formatItem:id},ld=function(){function e(t){X(this,e),this.seqCallback=t,this.currentSequence=void 0}return ee(e,[{key:"addLine",value:function(e){var t=/^>\s*(\S+)\s*(.*)/.exec(e);t?(this._flush(),this.currentSequence={id:t[1],sequence:""},t[2]&&(this.currentSequence.description=t[2].trim())):this.currentSequence&&/\S/.test(e)&&(this.currentSequence.sequence+=e.replace(/\s/g,""))}},{key:"_flush",value:function(){this.currentSequence&&this.seqCallback(this.currentSequence)}},{key:"finish",value:function(){this._flush()}}]),e}(),cd=function(){function e(t){X(this,e),this.fastaParser=void 0,this.eof=!1,this.lineNumber=0,this._underConstructionTopLevel=[],this._underConstructionById={},this._completedReferences={},this._underConstructionOrphans={};var n=function(){};this.featureCallback=t.featureCallback||n,this.endCallback=t.endCallback||n,this.commentCallback=t.commentCallback||n,this.errorCallback=t.errorCallback||n,this.directiveCallback=t.directiveCallback||n,this.sequenceCallback=t.sequenceCallback||n,this.bufferSize=void 0===t.bufferSize?1e3:t.bufferSize}return ee(e,[{key:"addLine",value:function(e){if(this.fastaParser)this.fastaParser.addLine(e);else if(!this.eof)if(this.lineNumber+=1,/^\s*[^#\s>]/.test(e))this._bufferLine(e);else{var t=/^\s*(#+)(.*)/.exec(e);if(t){var n=fe(t,2)[1],r=fe(t,3)[2];if(3===n.length)this._emitAllUnderConstructionFeatures();else if(2===n.length){var o=Xf(e);o&&("FASTA"===o.directive?(this._emitAllUnderConstructionFeatures(),this.eof=!0,this.fastaParser=new ld(this.sequenceCallback)):this._emitItem(o))}else r=r.replace(/\s*/,""),this._emitItem({comment:r})}else if(/^\s*$/.test(e));else{if(!/^\s*>/.test(e)){var a=e.replace(/\r?\n?$/g,"");throw new Error("GFF3 parse error.  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".concat(JSON.stringify(this._underConstructionOrphans)))}},{key:"_bufferLine",value:function(e){var t,n,r,o=this,a=V(V({},Zf(e)),{},{child_features:[],derived_features:[]}),i=(null===(t=a.attributes)||void 0===t?void 0:t.ID)||[],s=(null===(n=a.attributes)||void 0===n?void 0:n.Parent)||[],l=(null===(r=a.attributes)||void 0===r?void 0:r.Derives_from)||[];if(i.length||s.length||l.length){var c=void 0;i.forEach((function(e){var t=o._underConstructionById[e];t?(t[t.length-1].type!==a.type&&o._parseError('multi-line feature "'.concat(e,'" has inconsistent types: "').concat(a.type,'", "').concat(t[t.length-1].type,'"')),t.push(a),c=t):(c=[a],o._enforceBufferSizeLimit(1),s.length||l.length||o._underConstructionTopLevel.push(c),o._underConstructionById[e]=c,o._resolveReferencesTo(c,e))})),this._resolveReferencesFrom(c||[a],{Parent:s,Derives_from:l},i)}else this._emitItem([a])}},{key:"_resolveReferencesTo",value:function(e,t){var n=this._underConstructionOrphans[t];n&&(e.forEach((function(e){var t;(t=e.child_features).push.apply(t,pe(n.Parent))})),e.forEach((function(e){var t;(t=e.derived_features).push.apply(t,pe(n.Derives_from))})),delete this._underConstructionOrphans[t])}},{key:"_parseError",value:function(e){this.eof=!0,this.errorCallback("".concat(this.lineNumber,": ").concat(e))}},{key:"_resolveReferencesFrom",value:function(e,t,n){var r=this;function o(e,t,n){var r=e[t];r||(e[t]=r={});var o=r[n]||!1;return r[n]=!0,o}t.Parent.forEach((function(t){var a=r._underConstructionById[t];if(a)n.filter((function(e){return o(r._completedReferences,e,"Parent,".concat(t))})).length||a.forEach((function(t){t.child_features.push(e)}));else{var i=r._underConstructionOrphans[t];i||(r._underConstructionOrphans[t]=i={Parent:[],Derives_from:[]}),i.Parent.push(e)}})),t.Derives_from.forEach((function(t){var a=r._underConstructionById[t];if(a)n.filter((function(e){return o(r._completedReferences,e,"Derives_from,".concat(t))})).length||a.forEach((function(t){t.derived_features.push(e)}));else{var i=r._underConstructionOrphans[t];i||(r._underConstructionOrphans[t]=i={Parent:[],Derives_from:[]}),i.Derives_from.push(e)}}))}}]),e}();function ud(e){Lt&&Et?Et(e):e()}function fd(e){var t=V({encoding:"utf8",parseFeatures:!0,parseDirectives:!1,parseSequences:!0,parseComments:!1,bufferSize:1e3},e);return e.parseAll&&(t.parseFeatures=!0,t.parseDirectives=!0,t.parseComments=!0,t.parseSequences=!0),t}var dd=function(e){ne(n,e);var t=ce(n);function n(){var e,r=arguments.length>0&&void 0!==arguments[0]?arguments[0]:{};X(this,n),(e=t.call(this,{objectMode:!0})).textBuffer="";var o=fd(r);e.encoding=r.encoding||"utf8",e.decoder=new rf;var a=e.push.bind(le(e));return e.parser=new cd({featureCallback:o.parseFeatures?a:void 0,directiveCallback:o.parseDirectives?a:void 0,commentCallback:o.parseComments?a:void 0,sequenceCallback:o.parseSequences?a:void 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r;if(!this.haveWeEmittedData&&this.insertVersionDirective){var o=Array.isArray(e)?e[0]:e;"directive"in o&&"gff-version"!==o.directive&&this.push("##gff-version 3\n")}if("sequence"in e&&!this.fastaMode&&(this.push("##FASTA\n"),this.fastaMode=!0),r=Array.isArray(e)?e.map(id).join(""):id(e),this.push(r),this.linesSinceLastSyncMark>=this.minLinesBetweenSyncMarks)this.push("###\n"),this.linesSinceLastSyncMark=0;else{for(var a=0,i=0;i<r.length;i+=1)"\n"===r[i]&&(a+=1);this.linesSinceLastSyncMark+=a}this.haveWeEmittedData=!0,ud(n)}}]),n}(zf),hd={parseStream:function(){return new dd(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},parseStringSync:function(e){if(!e)return[];var t=fd(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}),n=[],r=n.push.bind(n),o=new cd({featureCallback:t.parseFeatures?r:void 0,directiveCallback:t.parseDirectives?r:void 0,commentCallback:t.parseComments?r:void 0,sequenceCallback:t.parseSequences?r:void 0,bufferSize:Infinity,errorCallback:function(e){throw e}});return e.split(/\r?\n/).forEach(o.addLine.bind(o)),o.finish(),n},formatSync:function(e){var t=[],n=[];e.forEach((function(e){"sequence"in e?n.push(e):t.push(e)}));var r=t.map(id).join("");return n.length&&(r+="##FASTA\n",r+=n.map(ad).join("")),r},formatStream:function(){return new pd(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},formatFile:function(e,t){var n=V({insertVersionDirective:!0},arguments.length>2&&void 0!==arguments[2]?arguments[2]:{});return new Promise((function(r,o){e.pipe(new pd(n)).on("end",(function(){return r(null)})).on("error",o).pipe(t)}))},util:sd};async function md(e,t,n){const r=hd.parseStringSync(t,{parseSequences:!0,parseComments:!0,parseDirectives:!1,parseFeatures:!0});if(0===r.length)throw new Error("No features found in GFF3 file");let o=0,a=n.assemblies.get(e);a||(a=n.addAssembly(e,"InMemoryFileDriver"));for(const e of r)if(Array.isArray(e)){const t=er.gff3ToAnnotationFeature(e),n=a.refSeqs.get(t.refSeq)??a.addRefSeq(t.refSeq,t.refSeq);n.features.has(t._id)||n.addFeature(t)}else if("comment"in e)a.addComment(e.comment);else{o++;let t=a.refSeqs.get(e.id);t||(t=a.addRefSeq(e.id,e.id,e.description)),e.description&&!t.description&&t.setDescription(e.description),t.addSequence({start:0,stop:e.sequence.length,sequence:e.sequence})}if(0===o)throw new Error("No embedded FASTA section found in GFF3");const i=await gd(a);return n.addCheckResults(i),a}async function gd(e){const t=[];for(const n of e.refSeqs.values())for(const e of n.features.values())for(const r of B.checkRegistry.getChecks().values()){const o=await r.checkFeature(l.getSnapshot(e),((e,t)=>Promise.resolve(n.getSequence(e,t))));t.push(...o)}return t}function yd(e){const{attributes:t}=e,n=t.get("gff_name");return n?n[0]:""}function vd(e){const{attributes:t}=e,n=t.get("gff_id"),r=t.get("transcript_id"),o=t.get("exon_id"),a=t.get("protein_id");return n?n[0]:r?r[0]:o?o[0]:a?a[0]:""}function _d(e){const t=yd(e),n=vd(e);return t?`: ${t}`:n?`: ${n}`:""}async function bd(e,t){let n;try{n=await e.text()}catch{n=""}return`${t?`${t} — `:""}${e.status} ${e.statusText}${n?` (${n})`:""}`}var wd={},Sd=Kl.exports;Object.defineProperty(wd,"__esModule",{value:!0});var xd=wd.default=void 0;xd=wd.default=(0,Sd(Zl).default)((0,N.default.jsx)("path",{d:"M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"}),"Close");const Ed=u.makeStyles()((e=>({dialogTitle:{background:e.palette.primary.main,color:e.palette.primary.contrastText,padding:e.spacing(2)},closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1.5),color:e.palette.primary.contrastText}}))),kd=p.observer((function(e){const{classes:t}=Ed(),{handleClose:n,title:r,...o}=e;return T.default.createElement(d.Dialog,{...o,header:T.default.createElement(T.default.Fragment,null,T.default.createElement(c.DialogTitle,{className:t.dialogTitle},r),T.default.createElement(c.IconButton,{"aria-label":"close",onClick:n,className:t.closeButton},T.default.createElement(xd,null)))})}));var Ad={},Od=Kl.exports;Object.defineProperty(Ad,"__esModule",{value:!0});var Cd=Ad.default=void 0;Cd=Ad.default=(0,Od(Zl).default)((0,N.default.jsx)("path",{d:"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm0 18c-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8-3.58 8-8 8z"}),"RadioButtonUnchecked");var Nd={},Rd=Kl.exports;Object.defineProperty(Nd,"__esModule",{value:!0});var Td=Nd.default=void 0;Td=Nd.default=(0,Rd(Zl).default)((0,N.default.jsx)("path",{d:"M12 7c-2.76 0-5 2.24-5 5s2.24 5 5 5 5-2.24 5-5-2.24-5-5-5zm0-5C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm0 18c-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8-3.58 8-8 8z"}),"RadioButtonChecked");var Id={},Pd=Kl.exports;Object.defineProperty(Id,"__esModule",{value:!0});var Md=Id.default=void 0;Md=Id.default=(0,Pd(Zl).default)((0,N.default.jsx)("path",{d:"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm1 15h-2v-6h2v6zm0-8h-2V7h2v2z"}),"Info");var Fd={},jd=Kl.exports;Object.defineProperty(Fd,"__esModule",{value:!0});var Ld,Dd=Fd.default=void 0;Dd=Fd.default=(0,jd(Zl).default)((0,N.default.jsx)("path",{d:"M3.9 12c0-1.71 1.39-3.1 3.1-3.1h4V7H7c-2.76 0-5 2.24-5 5s2.24 5 5 5h4v-1.9H7c-1.71 0-3.1-1.39-3.1-3.1zM8 13h8v-2H8v2zm9-6h-4v1.9h4c1.71 0 3.1 1.39 3.1 3.1s-1.39 3.1-3.1 3.1h-4V17h4c2.76 0 5-2.24 5-5s-2.24-5-5-5z"}),"Link"),function(e){e.GFF3="text/x-gff3",e.FASTA="text/x-fasta",e.BGZIP_FASTA="application/x-bgzip-fasta",e.FAI="text/x-fai",e.GZI="application/x-gzi",e.EXTERNAL="text/x-external"}(Ld||(Ld={}));const qd=u.makeStyles()((e=>({accordion:{border:`1px solid ${e.palette.divider}`,"&:not(:last-child)":{borderBottom:0}},accordionSummary:{flexDirection:"row-reverse"},accordionDetails:{padding:e.spacing(2),borderTop:"1px solid rgba(0, 0, 0, .125)"},radioIcon:{color:e?.palette?.tertiary?.contrastText},dialog:{minWidth:550,maxWidth:800}})));function Bd(e,t,n,r,o,a,i,s,l){return!(!e||!(t&&r||n===Ld.GFF3&&r||r&&o&&a||i&&s&&l))}function Ud({changeManager:e,handleClose:t,session:n}){const{classes:o}=qd(),{internetAccounts:a}=l.getRoot(n),{notify:i}=n,s=a.filter((e=>"ApolloInternetAccount"===e.type));if(0===s.length)throw new Error("No Apollo internet account found");const[u,d]=f.useState(""),[p,h]=f.useState(""),[m,g]=f.useState(!1),[y,v]=f.useState(Ld.BGZIP_FASTA),[_,b]=f.useState(!0),[w,S]=f.useState(!1),[x,E]=f.useState(!1),[k,A]=f.useState(null),[O,C]=f.useState(null),[N,R]=f.useState(null),[I,P]=f.useState(""),[M,F]=f.useState(""),[j,L]=f.useState(""),[D,q]=f.useState(!1),[B,U]=f.useState(!1);async function z(e,t){const{jobsManager:r}=n,o=new AbortController,[{baseURL:a,getFetcher:i}]=s,l=new URL("files",a);l.searchParams.set("type",t);const c=l.href,f=new FormData;let d=e.name;t===Ld.FAI||t===Ld.GZI?d=`${d}.txt`:B&&!e.name.toLocaleLowerCase().endsWith(".gz")?d=`${d}.gz`:!B&&e.name.toLocaleLowerCase().endsWith(".gz")&&(d=`${d}.txt`),f.append("file",e,d),f.append("type",t);const p=i({locationType:"UriLocation",uri:c});if(p){const t={name:`UploadAssemblyFile for ${u}`,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{o.abort(),r.abortJob(t.name)}};r.runJob(t),r.update(t.name,`Uploading ${e.name}, this may take awhile`);const{signal:n}=o,a=await p(c,{method:"POST",body:f,signal:n});if(!a.ok){const e=await bd(a,"Error when inserting new assembly (while uploading file)");return r.abortJob(t.name,e),h(e),""}const i=(await a.json())._id;return r.done(t),i}throw new Error("Failed to 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34:this.$=i[l]}},table:[{3:1,4:[1,2],6:3,13:4,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{1:[3]},{1:[2,1],5:10,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,3],5:21,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,12],12:[2,12],14:[2,12],22:[2,12]},{1:[2,14],12:[2,14],14:[2,14],22:[2,14]},{1:[2,15],12:[2,15],14:[2,15],22:[2,15]},{1:[2,16],12:[2,16],14:[2,16],22:[2,16]},{1:[2,17],12:[2,17],14:[2,17],22:[2,17]},{1:[2,18],12:[2,18],14:[2,18],22:[2,18]},{1:[2,2],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,5],12:[2,5],14:[2,5],22:[2,5]},{1:[2,7],12:[2,7],14:[2,7],22:[2,7]},{1:[2,8],12:[2,8],14:[2,8],22:[2,8]},{1:[2,9],12:[2,9],14:[2,9],22:[2,9]},{1:[2,10],12:[2,10],14:[2,10],22:[2,10]},{1:[2,19],12:[2,19],14:[2,19],22:[2,19]},{1:[2,20],12:[2,20],14:[2,20],22:[2,20]},{13:23,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{13:24,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9],22:[1,25]},{15:[1,29],17:[1,30],18:[1,33],23:26,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{1:[2,4],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,6],12:[2,6],14:[2,6],22:[2,6]},{1:[2,11],12:[2,11],14:[2,11],22:[2,11]},{1:[2,13],12:[2,13],14:[2,13],22:[2,13]},{15:[1,29],17:[1,30],18:[1,33],23:38,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{24:[1,39]},{24:[2,23]},{24:[2,24],28:[1,40]},{24:[2,30]},{24:[2,31]},{24:[2,32]},{24:[2,25],28:[2,25]},{24:[2,27],28:[2,27]},{24:[2,28],28:[2,28]},{24:[2,29],28:[2,29]},{24:[2,33],28:[2,33]},{24:[2,34],28:[2,34]},{24:[1,41]},{1:[2,21],12:[2,21],14:[2,21],22:[2,21]},{18:[1,33],27:42,29:34,30:[1,35],32:[1,36],33:[1,37]},{1:[2,22],12:[2,22],14:[2,22],22:[2,22]},{24:[2,26],28:[2,26]}],defaultActions:{27:[2,23],29:[2,30],30:[2,31],31:[2,32]},parseError:function(e,t){if(!t.recoverable)throw new Error(e);this.trace(e)},parse:function(e){var t=this,n=[0],r=[null],o=[],a=this.table,i="",s=0,l=0,c=o.slice.call(arguments,1);this.lexer.setInput(e),this.lexer.yy=this.yy,this.yy.lexer=this.lexer,this.yy.parser=this,void 0===this.lexer.yylloc&&(this.lexer.yylloc={});var u=this.lexer.yylloc;o.push(u);var f=this.lexer.options&&this.lexer.options.ranges;function d(){var e;return"number"!=typeof(e=t.lexer.lex()||1)&&(e=t.symbols_[e]||e),e}this.parseError="function"==typeof this.yy.parseError?this.yy.parseError:Object.getPrototypeOf(this).parseError;for(var p,h,m,g,y,v,_,b={};;){if(this.defaultActions[h=n[n.length-1]]?m=this.defaultActions[h]:(null==p&&(p=d()),m=a[h]&&a[h][p]),void 0===m||!m.length||!m[0]){var w;for(y in _=[],a[h])this.terminals_[y]&&y>2&&_.push("'"+this.terminals_[y]+"'");w=this.lexer.showPosition?"Parse error on line "+(s+1)+":\n"+this.lexer.showPosition()+"\nExpecting "+_.join(", ")+", got '"+(this.terminals_[p]||p)+"'":"Parse error on line "+(s+1)+": Unexpected "+(1==p?"end of input":"'"+(this.terminals_[p]||p)+"'"),this.parseError(w,{text:this.lexer.match,token:this.terminals_[p]||p,line:this.lexer.yylineno,loc:u,expected:_})}if(m[0]instanceof Array&&m.length>1)throw new Error("Parse Error: multiple actions possible at state: "+h+", token: "+p);switch(m[0]){case 1:n.push(p),r.push(this.lexer.yytext),o.push(this.lexer.yylloc),n.push(m[1]),p=null,l=this.lexer.yyleng,i=this.lexer.yytext,s=this.lexer.yylineno,u=this.lexer.yylloc;break;case 2:if(b.$=r[r.length-(v=this.productions_[m[1]][1])],b._$={first_line:o[o.length-(v||1)].first_line,last_line:o[o.length-1].last_line,first_column:o[o.length-(v||1)].first_column,last_column:o[o.length-1].last_column},f&&(b._$.range=[o[o.length-(v||1)].range[0],o[o.length-1].range[1]]),void 0!==(g=this.performAction.apply(b,[i,l,s,this.yy,m[1],r,o].concat(c))))return g;v&&(n=n.slice(0,-1*v*2),r=r.slice(0,-1*v),o=o.slice(0,-1*v)),n.push(this.productions_[m[1]][0]),r.push(b.$),o.push(b._$),n.push(a[n[n.length-2]][n[n.length-1]]);break;case 3:return!0}}return!0}},t={initialize:function(){this._nodes=[],this._node={},this._stash=[]},set:function(e){for(var t in e)this._node[t]=e[t];return this._node},node:function(e){return arguments.length&&(this._node=e),this._node},push:function(){this._nodes.push(this._node),this._node={}},unshift:function(){this._nodes.unshift(this._node),this._node={}},yield:function(){var e=this._nodes;return this.initialize(),e}},n=function(){var e={EOF:1,parseError:function(e,t){if(!this.yy.parser)throw new Error(e);this.yy.parser.parseError(e,t)},setInput:function(e){return this._input=e,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var e=this._input[0];return this.yytext+=e,this.yyleng++,this.offset++,this.match+=e,this.matched+=e,e.match(/(?:\r\n?|\n).*/g)?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),e},unput:function(e){var t=e.length,n=e.split(/(?:\r\n?|\n)/g);this._input=e+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-t-1),this.offset-=t;var r=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),n.length-1&&(this.yylineno-=n.length-1);var o=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:n?(n.length===r.length?this.yylloc.first_column:0)+r[r.length-n.length].length-n[0].length:this.yylloc.first_column-t},this.options.ranges&&(this.yylloc.range=[o[0],o[0]+this.yyleng-t]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,o;if(this.options.backtrack_lexer&&(o={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(o.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var a in o)this[a]=o[a];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var o=this._currentRules(),a=0;a<o.length;a++)if((n=this._input.match(this.rules[o[a]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=a,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,o[a])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,o[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){return this.next()||this.lex()},begin:function(e){this.conditionStack.push(e)},popState:function(){return this.conditionStack.length-1>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(e){return(e=this.conditionStack.length-1-Math.abs(e||0))>=0?this.conditionStack[e]:"INITIAL"},pushState:function(e){this.begin(e)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(e,t,n,r){switch(n){case 0:return 4;case 1:return 14;case 2:return 12;case 3:return 15;case 4:return 16;case 5:return 22;case 6:return 24;case 7:return 28;case 8:return 30;case 9:return 18;case 10:return t.yytext=t.yytext.substr(1,t.yyleng-2),32;case 11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=o,n.Parser=o.Parser,n.parse=function(){return o.parse.apply(o,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var o=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(o)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),o=e("fs"),a={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT MEMBER_EXPRESSION",""]],LEADING_CHILD_MEMBER_EXPRESSION:[["MEMBER_EXPRESSION",'yy.ast.set({ scope: "child", operation: "member" })']],DESCENDANT_MEMBER_COMPONENT:[["DOT_DOT MEMBER_EXPRESSION",""]],MEMBER_EXPRESSION:[["STAR",'yy.ast.set({ expression: { type: "wildcard", value: $1 } })'],["IDENTIFIER",'yy.ast.set({ expression: { type: "identifier", value: $1 } })'],["SCRIPT_EXPRESSION",'yy.ast.set({ expression: { type: "script_expression", value: $1 } })'],["INTEGER",'yy.ast.set({ expression: { type: "numeric_literal", value: parseInt($1) } })'],["END",""]],SUBSCRIPT_COMPONENT:[["CHILD_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_SUBSCRIPT_COMPONENT:[["[ SUBSCRIPT ]",""]],DESCENDANT_SUBSCRIPT_COMPONENT:[["DOT_DOT [ SUBSCRIPT ]",""]],SUBSCRIPT:[["SUBSCRIPT_EXPRESSION",""],["SUBSCRIPT_EXPRESSION_LIST",'$1.length > 1? yy.ast.set({ expression: { type: "union", value: $1 } }) : $$ = $1']],SUBSCRIPT_EXPRESSION_LIST:[["SUBSCRIPT_EXPRESSION_LISTABLE","$$ = [$1]"],["SUBSCRIPT_EXPRESSION_LIST , SUBSCRIPT_EXPRESSION_LISTABLE","$$ = $1.concat($3)"]],SUBSCRIPT_EXPRESSION_LISTABLE:[["INTEGER",'$$ = { expression: { type: "numeric_literal", value: parseInt($1) } }; yy.ast.set($$)'],["STRING_LITERAL",'$$ = { expression: { type: "string_literal", value: $1 } }; yy.ast.set($$)'],["ARRAY_SLICE",'$$ = { expression: { type: "slice", value: $1 } }; yy.ast.set($$)']],SUBSCRIPT_EXPRESSION:[["STAR",'$$ = { expression: { type: "wildcard", value: $1 } }; yy.ast.set($$)'],["SCRIPT_EXPRESSION",'$$ = { expression: { type: "script_expression", value: $1 } }; yy.ast.set($$)'],["FILTER_EXPRESSION",'$$ = { expression: { type: "filter_expression", value: $1 } }; yy.ast.set($$)']],STRING_LITERAL:[["QQ_STRING","$$ = $1"],["Q_STRING","$$ = $1"]]}};o.readFileSync&&(a.moduleInclude=o.readFileSync(e.resolve("../include/module.js")),a.actionInclude=o.readFileSync(e.resolve("../include/action.js"))),t.exports=a},{"./dict":2,fs:12}],4:[function(e,t,n){var r=e("./aesprim"),o=e("./slice"),a=e("static-eval"),i=e("underscore").uniq,s=function(){return this.initialize.apply(this,arguments)};function l(t,n,o){var a=e("./index"),i=p(r.parse(n).body[0].expression,{"@":t.value}),s=o.replace(/\{\{\s*value\s*\}\}/g,i),l=a.nodes(t.value,s);return l.forEach((function(e){e.path=t.path.concat(e.path.slice(1))})),l}function c(e){return Array.isArray(e)}function u(e){return function(t,n,r,o){var a=t.value,i=t.path,s=[],l=function(t,a){var i;c(t)?(t.forEach((function(e,t){s.length>=o||r(t,e,n)&&s.push({path:a.concat(t),value:e})})),t.forEach((function(t,n){s.length>=o||e&&l(t,a.concat(n))}))):(i=t)&&!(i instanceof Array)&&i instanceof 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Function)throw new Error("handler must be a function");this._fns[e]=t},s.prototype._fns={"member-child-identifier":function(e,t){var n=e.expression.value,r=t.value;if(r instanceof Object&&n in r)return[{value:r[n],path:t.path.concat(n)}]},"member-descendant-identifier":d((function(e,t,n){return e==n})),"subscript-child-numeric_literal":f((function(e,t,n){return e===n})),"member-child-numeric_literal":f((function(e,t,n){return String(e)===String(n)})),"subscript-descendant-numeric_literal":d((function(e,t,n){return e===n})),"member-child-wildcard":f((function(){return!0})),"member-descendant-wildcard":d((function(){return!0})),"subscript-descendant-wildcard":d((function(){return!0})),"subscript-child-wildcard":f((function(){return!0})),"subscript-child-slice":function(e,t){if(c(t.value)){var n=e.expression.value.split(":").map(m),r=t.value.map((function(e,n){return{value:e,path:t.path.concat(n)}}));return o.apply(null,[r].concat(n))}},"subscript-child-union":function(e,t){var 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$N({changeManager:e,handleClose:t,session:n,sourceAssemblyId:r,sourceFeature:o}){const{notify:a}=n,[i,s]=f.useState(String(o.max)),[l,u]=f.useState(String(o.min+1)),[d,p]=f.useState(""),[h,m]=f.useState(""),[g,y]=f.useState(""),v=Number(i)<=Number(l);return T.default.createElement(kd,{open:!0,title:"Add new child feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog"},T.default.createElement("form",{onSubmit:async function(n){n.preventDefault(),m("");const s=new er.AddFeatureChange({changedIds:[o._id],typeName:"AddFeatureChange",assembly:r,addedFeature:{_id:(new $n).toHexString(),refSeq:o.refSeq,min:Number(l)-1,max:Number(i),type:d},parentFeatureId:o._id});await e.submit(s),a("Feature added successfully","success"),t(),n.preventDefault()}},T.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(c.TextField,{margin:"dense",id:"start",label:"Start",type:"number",fullWidth:!0,variant:"outlined",value:l,onChange:e=>{u(e.target.value)}}),T.default.createElement(c.TextField,{margin:"dense",id:"end",label:"End",type:"number",fullWidth:!0,variant:"outlined",value:i,onChange:e=>{s(e.target.value)},error:v,helperText:v?'"End" must be greater than "Start"':null}),T.default.createElement(WN,{session:n,ontologyName:"Sequence Ontology",style:{width:170},value:d,filterTerms:zN,fetchValidTerms:async function(e,t,n){const r=await HN(e,t);if(r)return r;y(`Type "${e?.type}" does not have any children in the ontology`)}.bind(null,o),renderInput:e=>T.default.createElement(c.TextField,{...e,label:"Type",variant:"outlined",fullWidth:!0,error:Boolean(g),helperText:g}),onChange:(e,t)=>{var n;t&&(n=t,m(""),p(n))}})),T.default.createElement(c.DialogActions,null,T.default.createElement(c.Button,{variant:"contained",type:"submit",disabled:v||!(l&&i&&d)},"Submit"),T.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),h?T.default.createElement(c.DialogContent,null,T.default.createElement(c.DialogContentText,{color:"error"},h)):null)}function VN({changeManager:e,handleClose:t,region:n,session:r}){const{notify:o}=r,[a,i]=f.useState(String(n.end)),[s,l]=f.useState(String(n.start+1)),[u,d]=f.useState(""),[p,h]=f.useState(),[m,g]=f.useState(""),y=Number(a)<=Number(s);return T.default.createElement(kd,{open:!0,title:"Add new feature",handleClose:t,maxWidth:!1,"data-testid":"add-feature-dialog"},T.default.createElement("form",{onSubmit:async function(i){let l;i.preventDefault(),g("");for(const[,e]of r.apolloDataStore.assemblies??new Map)if(e._id===n.assemblyName)for(const[,t]of e.refSeqs??new Map)t.name===n.refName&&(l=t._id);if(!l)return void 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0}),T.default.createElement(c.MenuItem,{value:1},"+"),T.default.createElement(c.MenuItem,{value:-1},"-")))),T.default.createElement(c.DialogActions,null,T.default.createElement(c.Button,{variant:"contained",type:"submit",disabled:y||!(s&&a&&u)},"Submit"),T.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),m?T.default.createElement(c.DialogContent,null,T.default.createElement(c.DialogContentText,{color:"error"},m)):null)}function JN(e,t){const n=(new $n).toHexString();t.push(n);const r={};if(e.children)for(const n of Object.values(e.children)){const e=JN(n,t);r[e._id]=e}const o="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString();return{...e,refSeq:o,children:e.children&&r,_id:n}}function YN({changeManager:e,handleClose:t,session:n,sourceAssemblyId:o,sourceFeature:a}){const{assemblyManager:i,notify:s}=n,u=i.assemblyList,[d,p]=f.useState(u.find((e=>e.name!==o))?.name),[h,m]=f.useState([]),[g,y]=f.useState(""),[v,_]=f.useState(a.min),[b,w]=f.useState("");function S(e,t){const n={};if(e.children)for(const r of Object.values(e.children)){const e=S(r,t);e.refSeq=g,e.min=e.min+t,e.max=e.max+t,n[e._id]=e}const r="string"==typeof e.refSeq?e.refSeq:e.refSeq.toHexString(),o="string"==typeof e._id?e._id:e._id.toHexString();return{...e,refSeq:r,children:e.children&&n,_id:o}}return f.useEffect((()=>{y(""),async function(){if(!d)return void w("No assemblies to copy to");const e=await i.waitForAssembly(d);if(!e)return;const{refNameAliases:t}=e;if(!t)return;const n=[...Object.entries(t)].filter((([e,t])=>e!==t)).map((([e,t])=>({_id:e,name:t})));m(n),y(n[0]?._id||"")}().catch((e=>{w(String(e))}))}),[d,i]),T.default.createElement(kd,{open:!0,title:"Copy features and annotations",handleClose:t,maxWidth:!1,"data-testid":"copy-feature"},T.default.createElement("form",{onSubmit:async function(n){if(!d)return;n.preventDefault(),w("");const r=a.length,o=await i.waitForAssembly(d);if(!o)return void w(`Assembly not found: ${d}.`);const c=o.getCanonicalRefName(g),u=o.regions?.find((e=>e.refName===c));if(!u)return void w(`RefSeq not found: ${g}.`);const f=v+r;if(f>u.end)return void w(`Feature would extend beyond the bounds of the selected reference sequence. 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assembly"),T.default.createElement(c.Select,{labelId:"label",value:d,onChange:function(e){p(e.target.value)}},u.filter((e=>e.name!==o)).map((e=>T.default.createElement(c.MenuItem,{key:e.name,value:e.name},r.readConfObject(e,"displayName"))))),T.default.createElement(c.DialogContentText,null,"Target reference sequence"),T.default.createElement(c.Select,{labelId:"label",value:g,onChange:function(e){y(e.target.value)}},h.map((e=>T.default.createElement(c.MenuItem,{key:e._id,value:e._id},e.name)))),T.default.createElement(c.DialogContentText,null,"Start position in target reference sequence"),T.default.createElement(c.TextField,{margin:"dense",type:"number",fullWidth:!0,variant:"outlined",value:v,onChange:e=>{_(Number(e.target.value))}})),T.default.createElement(c.DialogActions,null,T.default.createElement(c.Button,{disabled:!d||!g||!v,variant:"contained",type:"submit"},"Submit"),T.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),b?T.default.createElement(c.DialogContent,null,T.default.createElement(c.DialogContentText,{color:"error"},b)):null)}function KN({changeManager:e,handleClose:t,session:n}){const{internetAccounts:r}=l.getRoot(n),[o,a]=f.useState(),[i,s]=f.useState(""),[u,d]=f.useState(!1),[p,h]=f.useState(!1),m=r.filter((e=>"ApolloInternetAccount"===e.type));if(0===m.length)throw new Error("No Apollo internet account found");const[g,y]=f.useState(m[0]),{collaborationServerDriver:v}=n.apolloDataStore,_=v.getAssemblies();return f.useEffect((()=>{_.length>0&&void 0===o&&a(_[0])}),[_,o]),T.default.createElement(kd,{open:!0,title:"Delete Assembly",handleClose:t,maxWidth:!1,"data-testid":"delete-assembly"},T.default.createElement("form",{onSubmit:async function(n){if(n.preventDefault(),h(!0),s(""),!o)return void s("Must select assembly!");const r=new er.DeleteAssemblyChange({typeName:"DeleteAssemblyChange",assembly:o.name});await e.submit(r,{internetAccountId:g.internetAccountId}),t(),n.preventDefault()}},T.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},m.length>1?T.default.createElement(T.default.Fragment,null,T.default.createElement(c.DialogContentText,null,"Select account"),T.default.createElement(c.Select,{value:g.internetAccountId,onChange:function(e){h(!1);const t=m.find((t=>t.internetAccountId===e.target.value));if(!t)throw new Error(`Could not find internetAccount with ID 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deleted"}))),T.default.createElement(c.DialogActions,null,T.default.createElement(c.Button,{disabled:!o||!u,variant:"contained",type:"submit"},"Delete"),T.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),i?T.default.createElement(c.DialogContent,null,T.default.createElement(c.DialogContentText,{color:"error"},i)):null)}function ZN({changeManager:e,handleClose:t,selectedFeature:n,session:r,setSelectedFeature:o,sourceAssemblyId:a,sourceFeature:i}){const{notify:s}=r,[u,d]=f.useState("");return T.default.createElement(kd,{open:!0,title:"Delete feature",handleClose:t,maxWidth:!1,"data-testid":"delete-feature"},T.default.createElement("form",{onSubmit:async function(r){r.preventDefault(),d(""),n?._id===i._id&&o();const c=new er.DeleteFeatureChange({changedIds:[i._id],typeName:"DeleteFeatureChange",assembly:a,deletedFeature:l.getSnapshot(i),parentFeatureId:i.parent?._id});await e.submit(c),s("Feature deleted successfully","success"),t(),r.preventDefault()}},T.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(c.DialogContentText,null,"Are you sure you want to delete the selected feature?")),T.default.createElement(c.DialogActions,null,T.default.createElement(c.Button,{variant:"contained",type:"submit"},"Yes"),T.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:t},"Cancel"))),u?T.default.createElement(c.DialogContent,null,T.default.createElement(c.DialogContentText,{color:"error"},u)):null)}var XN={exports:{}};function QN({handleClose:e,session:t}){const[n,o]=f.useState(),[a,i]=f.useState(""),{collaborationServerDriver:s,getInternetAccount:u,inMemoryFileDriver:d}=t.apolloDataStore,p=[...s.getAssemblies(),...d.getAssemblies()];return T.default.createElement(kd,{open:!0,title:"Export GFF3",handleClose:e,maxWidth:!1,"data-testid":"download-gff3"},T.default.createElement("form",{onSubmit:async function(o){if(o.preventDefault(),i(""),!n)return void i("Must select assembly to download");const{internetAccountConfigId:a}=r.getConf(n,["sequence","metadata"]);a?await async function(e){if(!n)return void i("Must select assembly to download");const t=u(n.configuration.name,e),r=new URL("export/getID",t.baseURL),o=new URLSearchParams({assembly:n.name});r.search=o.toString();const a=r.toString(),s=t.getFetcher({locationType:"UriLocation",uri:a}),l=await s(a,{method:"GET"});if(!l.ok){const e=await bd(l,"Error when exporting ID");return void i(e)}const{exportID:c}=await l.json(),f=new URL("export",t.baseURL),d=new URLSearchParams({exportID:c,includeFASTA:"true"});f.search=d.toString();const p=f.toString();window.open(p,"_blank")}(a):function(e){if(!n)return void i("Must select assembly to download");const{assemblies:t}=e.apolloDataStore,o=t.get(n.name),a=o?.refSeqs;if(!a)return void i(`No refSeqs found for assembly "${n.name}"`);const s=[{directive:"gff-version",value:"3"}],c=r.getConf(n,["sequence","adapter","features"]);for(const e of c){const{end:t,refName:n,start:r}=e;s.push({directive:"sequence-region",value:`${n} ${r+1} ${t}`})}for(const[,e]of a){const{features:t}=e;if(t)for(const[,e]of t)s.push(er.annotationFeatureToGFF3(l.getSnapshot(e)))}for(const e of c){const{refName:t,seq:n}=e;s.push({id:t,description:"",sequence:n})}const u=hd.formatSync(s),f=new Blob([u],{type:"text/plain;charset=utf-8"});XN.exports.saveAs(f,`${n.displayName??n.name}.gff3`)}(t),e()}},T.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(c.DialogContentText,null,"Select assembly"),T.default.createElement(c.Select,{labelId:"label",value:n?.name??"",onChange:function(e){const t=p.find((t=>t.name===e.target.value));o(t)},disabled:0===p.length},p.map((e=>T.default.createElement(c.MenuItem,{key:e.name,value:e.name},e.displayName??e.name)))),T.default.createElement(c.DialogContentText,null,"Select assembly to export to GFF3")),T.default.createElement(c.DialogActions,null,T.default.createElement(c.Button,{disabled:!n,variant:"contained",type:"submit"},"Download"),T.default.createElement(c.Button,{variant:"outlined",type:"submit",onClick:e},"Cancel"))),a?T.default.createElement(c.DialogContent,null,T.default.createElement(c.DialogContentText,{color:"error"},a)):null)}function eR({changeManager:e,handleClose:t,session:n}){const{apolloDataStore:o}=n,[a,i]=f.useState(),[s,l]=f.useState(),[u,d]=f.useState(""),[p,h]=f.useState(!1),[m,g]=f.useState(),[y,v]=f.useState(!1),[_,b]=f.useState(!1),{collaborationServerDriver:w,getInternetAccount:S}=o,x=w.getAssemblies();return f.useEffect((()=>{s&&(async()=>{const{internetAccountConfigId:e}=r.getConf(s,["sequence","metadata"]),t=S(s.name,e);if(!t)throw new Error("No Apollo internet account found");const{baseURL:n}=t,o=new URL("features/count",n),a=new URLSearchParams({assemblyId:s.name});o.search=a.toString();const i=t.getFetcher({locationType:"UriLocation",uri:o.toString()});b(!0);const l=await i(o.toString(),{method:"GET"});if(!l.ok)throw new Error(await bd(l));{const e=await l.json();g(e.count)}b(!1)})().catch((e=>{console.error(e),d(e.message??e)}))}),[S,n,s]),T.default.createElement(kd,{open:!0,title:"Import Features from GFF3 file",handleClose:t,maxWidth:!1,"data-testid":"import-features-dialog"},_?T.default.createElement(F.default,null):null,T.default.createElement("form",{onSubmit:async function(o){o.preventDefault(),d(""),b(!0),h(!0);let i="";if(!a)return void d("must select a file");if(!s)return void d("Must select assembly to 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e.submit(x,{updateJobsManager:!0})}},T.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(c.DialogContentText,null,"Select assembly"),T.default.createElement(c.Select,{labelId:"label",value:s?.name??"",onChange:function(e){const t=x.find((t=>t.name===e.target.value));l(t),h(!1)},disabled:p&&!u},x.map((e=>T.default.createElement(c.MenuItem,{key:e.name,value:e.name},e.displayName??e.name))))),T.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(c.DialogContentText,null,"Upload GFF3 to load features"),T.default.createElement("input",{type:"file",onChange:function(e){h(!1),e.target.files&&i(e.target.files[0])},disabled:p&&!u})),m&&m>0?T.default.createElement(c.DialogContent,null,T.default.createElement(c.DialogContentText,null,"This assembly already has ",m," features, would you like to delete the existing features before importing new 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s="application/octet-stream"===e.type,l=/constructor/i.test(o.HTMLElement)||o.safari,c=/CriOS\/[\d]+/.test(navigator.userAgent);if((c||s&&l||a)&&"undefined"!=typeof FileReader){var u=new FileReader;u.onloadend=function(){var e=u.result;e=c?e:e.replace(/^data:[^;]*;/,"data:attachment/file;"),i?i.location.href=e:location=e,i=null},u.readAsDataURL(e)}else{var f=o.URL||o.webkitURL,d=f.createObjectURL(e);i?i.location=d:location.href=d,i=null,setTimeout((function(){f.revokeObjectURL(d)}),4e4)}});o.saveAs=i.saveAs=i,e.exports=i}()}(XN);var rR={},oR=Kl.exports;Object.defineProperty(rR,"__esModule",{value:!0});var aR=rR.default=void 0;function iR({changeManager:e,handleClose:t,session:n}){const{internetAccounts:r}=l.getRoot(n),o=r.filter((e=>"ApolloInternetAccount"===e.type&&e.role?.includes("admin")));if(0===o.length)throw new Error("No Apollo internet account found");const[a,i]=f.useState(""),[s,u]=f.useState(o[0]),[d,p]=f.useState([]),h=f.useCallback((async()=>{const{baseURL:e}=s,t=new 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p={name:f,aliases:[d],displayName:d,sequence:{trackId:`sequenceConfigId-${d}`,type:"ReferenceSequenceTrack",adapter:{type:"ApolloSequenceAdapter",assemblyId:f},metadata:{apollo:!0,...n.isElectron?{file:l.path}:{}}}};await(a||o)(p);const h=await i.waitForAssembly(p.name);h?(t.addApolloTrackConfig(h),s(`Loaded GFF3 ${l.name}`,"success")):s(`Error loading GFF3 ${l.name}`,"error"),e()}},T.default.createElement(c.DialogContent,{style:{display:"flex",flexDirection:"column"}},T.default.createElement(c.FormControl,null,T.default.createElement("div",{style:{flexDirection:"row"}},T.default.createElement(c.Button,{variant:"contained",component:"label",style:{marginRight:v.spacing()}},"Choose File",T.default.createElement("input",{type:"file",required:!0,hidden:!0,onChange:function(e){const t=e.target.files?.item(0);if(t&&(m(""),u(t),!d)){const e=t.name,n=e.lastIndexOf(".");p(-1===n?e:e.slice(0,n))}}})),l?l.name:"No file chosen"),T.default.createElement(c.FormHelperText,null,"Make sure your GFF3 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r){if(i.refSeq!==a.refName)continue;const{end:r,refSeq:s,start:l}=i,c=e.lgv.bpToPx({refName:s,coord:l,regionNumber:o});if(!c)continue;const u=c.offsetPx-e.lgv.offsetPx,f=(r-l)/e.lgv.bpPerPx;t.fillStyle="rgba(0,255,0,.2)",t.fillRect(u,1,f,100),t.fillStyle="black",t.fillText(n.name,u+1,11,f-2)}o++}}}}),{name:"LinearApolloDisplayRenderCollaborators"}))}})))}(0,t);return a.actions((e=>({afterAttach(){l.addDisposer(e,s.autorun((async()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;if(e.lgv.bpPerPx>3)return;const t=e.seqTrackCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.lgv.bpPerPx<=1?125:95);const r=e.lgv.bpPerPx<=1?[3,2,1,0,0,-1,-2,-3]:[3,2,1,-1,-2,-3];let o=0;for(const n of r){const r=e.theme?.palette.framesCDS.at(n)?.main;r&&(t.fillStyle=r,t.fillRect(0,o,e.lgv.dynamicBlocks.totalWidthPx,e.sequenceRowHeight)),o+=e.sequenceRowHeight}for(const[r,o]of e.regions.entries()){const a=e.session.apolloDataStore.getBackendDriver(o.assemblyName);if(!a)throw new Error("Failed to get the backend driver");const{seq:i}=await a.getSequence(o);if(!i)return;for(const[a,s]of[...i].entries()){const l=(e.lgv.bpToPx({refName:o.refName,coord:o.start+a,regionNumber:r})?.offsetPx??0)-e.lgv.offsetPx,c=3/e.lgv.bpPerPx,u=e.lgv.displayedRegions[r].reversed?l-c:l;for(let n=2;n>=0;n--)(o.start+a)%3===n&&sF(t,e.lgv.bpPerPx,u,e.sequenceRowHeight*(2-n),c,e.sequenceRowHeight,i,a,!1);if(e.lgv.bpPerPx<=1){const i=(e.lgv.bpToPx({refName:o.refName,coord:o.start+a,regionNumber:r})?.offsetPx??0)-e.lgv.offsetPx,l=1/e.lgv.bpPerPx,c=e.lgv.displayedRegions[r].reversed?i-l:i;t.beginPath(),t.fillStyle=aF(s,e.theme),t.rect(c,3*e.sequenceRowHeight,l,e.sequenceRowHeight),t.fill(),e.lgv.bpPerPx<=.1&&(t.stroke(),iF(t,c,l,s,3*e.sequenceRowHeight));const u=n.revcom(s);t.beginPath(),t.fillStyle=aF(u,e.theme),t.rect(c,4*e.sequenceRowHeight,l,e.sequenceRowHeight),t.fill(),e.lgv.bpPerPx<=.1&&(t.stroke(),iF(t,c,l,u,4*e.sequenceRowHeight))}for(let n=0;n<=2;n++)(o.start+a)%3===n&&sF(t,e.lgv.bpPerPx,u,e.sequenceRowHeight*((e.lgv.bpPerPx<=1?5:3)+n),c,e.sequenceRowHeight,i,a,!0)}}}),{name:"LinearApolloDisplayRenderSequence"}))}})))}(0,t).actions((e=>({afterAttach(){l.addDisposer(e,s.autorun((()=>{const{canvas:t,featureLayouts:r,featuresHeight:o,lgv:a}=e;if(!a.initialized||e.regionCannotBeRendered())return;const{displayedRegions:i,dynamicBlocks:s}=a,l=t?.getContext("2d");if(l){l.clearRect(0,0,s.totalWidthPx,o);for(const[t,o]of r.entries()){const r=i[t];for(const[a,i]of o.entries())for(const[o,s]of i){const i=e.getAnnotationFeatureById(s);o>0||!i||n.doesIntersect2(r.start,r.end,i.min,i.max)&&e.getGlyph(i).draw(l,i,a,e,t)}}}}),{name:"LinearApolloDisplayRenderFeatures"}))}})))}(0,t);return a.named("LinearApolloDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0,apolloHover:void 0}))).views((e=>({getMousePosition(t){const n=function(e,t){const n=e.currentTarget,{clientX:r,clientY:o}=e,{left:a,top:i}=n.getBoundingClientRect(),s=r-a,l=o-i,{coord:c,index:u,refName:f}=t.pxToBp(s);return{x:s,y:l,refName:f,bp:c,regionNumber:u}}(t,e.lgv),{bp:r,regionNumber:o,y:a}=n,i=Math.floor(a/e.apolloRowHeight),s=e.featureLayouts[o].get(i);if(!s)return n;const l=s.find((t=>{const n=e.getAnnotationFeatureById(t[1]);return n&&r>=n.min&&r<=n.max}));if(!l)return n;const[c,u]=l,f=e.getAnnotationFeatureById(u);if(!f)return n;const d=e.getGlyph(f),{featureTypeOntology:p}=e.session.apolloDataStore.ontologyManager;if(!p)throw new Error("featureTypeOntology is undefined");const h=d.getFeatureFromLayout(f,r,c,p);return h?{...n,featureAndGlyphUnderMouse:{feature:h,topLevelFeature:f,glyph:d}}:n}}))).actions((e=>({continueDrag(t,n){if(!e.apolloDragging)throw new Error("continueDrag() 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s=cF(n.getFrame(a.min,a.max,c.strand??1,a.phase),o.bpPerPx),u=(o.bpToPx({refName:r.refName,coord:a.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,f=(a.max-a.min)/o.bpPerPx;fF(t,l,o.displayedRegions[e].reversed?u-f:u,i,s,f)}}else{const n=uF(c.strand,o.bpPerPx),a=(o.bpToPx({refName:r.refName,coord:c.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,s=c.length/o.bpPerPx;fF(t,l,o.displayedRegions[e].reversed?a-s:a,i,n,s)}}),{name:"LinearApolloDisplayRenderSeqHighlight"}))}})))}(0,t);return a.views((e=>({contextMenuItems(t){const{apolloHover:n}=e;if(!n||!t)return[];const{topLevelFeature:r}=n;return e.getGlyph(r).getContextMenuItems(e)}}))).actions((e=>({startDrag(t,n,r){e.apolloDragging={start:t,current:t,feature:n,edge:r}},endDrag(){if(!e.apolloDragging)throw new Error("endDrag() called with no current drag in progress");const{current:t,edge:n,feature:r,start:o}=e.apolloDragging;if(Math.abs(t.x-o.x)<=4)return e.setDragging(),void e.setCursor();const{displayedRegions:a}=e.lgv,i=e.getAssemblyId(a[o.regionNumber].assemblyName);let s;if("max"===n){const e=r._id;s=new er.LocationEndChange({typeName:"LocationEndChange",changedIds:[e],featureId:e,oldEnd:r.max,newEnd:t.bp,assembly:i})}else{const e=r._id;s=new er.LocationStartChange({typeName:"LocationStartChange",changedIds:[e],featureId:e,oldStart:r.min,newStart:t.bp,assembly:i})}e.changeManager.submit(s),e.setDragging(),e.setCursor()}}))).actions((e=>({onMouseDown(t){const n=e.getMousePosition(t);lF(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);lF(n)?n.featureAndGlyphUnderMouse.glyph.onMouseMove(e,n,t):(e.setApolloHover(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setApolloHover();const n=e.getMousePosition(t);lF(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);lF(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseUp(e,n,t),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){l.addDisposer(e,s.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,apolloHover:r}=e;if(!r)return;const{glyph:o}=r;o.drawHover(e,t),o.drawTooltip(e,t),n&&e.getGlyph(n.feature.topLevelFeature).drawDragPreview(e,t)}),{name:"LinearApolloDisplayRenderMouseoverAndDrag"}))}})))}(0,t).props({tabularEditor:l.types.optional(EM,{})}).named("LinearApolloDisplay")}var pF={},hF=Kl.exports;Object.defineProperty(pF,"__esModule",{value:!0});var mF=pF.default=void 0;mF=pF.default=(0,hF(Zl).default)((0,N.default.jsx)("path",{d:"m12 8-6 6 1.41 1.41L12 10.83l4.59 4.58L18 14z"}),"ExpandLess");var gF={},yF=Kl.exports;Object.defineProperty(gF,"__esModule",{value:!0});var vF=gF.default=void 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t=c.useTheme(),{model:r}=e,{loading:o,apolloDragging:a,apolloRowHeight:i,contextMenuItems:s,cursor:l,featuresHeight:u,isShown:p,onMouseDown:h,onMouseLeave:m,onMouseMove:g,onMouseUp:y,regionCannotBeRendered:v,session:_,setCanvas:b,setCollaboratorCanvas:w,setOverlayCanvas:S,setSeqTrackCanvas:x,setSeqTrackOverlayCanvas:E,setTheme:k}=r,{classes:A}=_F(),O=n.getContainingView(r);f.useEffect((()=>{k(t)}),[t,k]);const[C,N]=f.useState(),[R,I]=f.useState([]),P=v();if(!p)return null;const{assemblyManager:M}=_;return T.default.createElement(T.default.Fragment,null,O.bpPerPx<=3?T.default.createElement("div",{className:A.canvasContainer,style:{width:O.dynamicBlocks.totalWidthPx,height:O.bpPerPx<=1?125:95}},T.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),x(e)},width:O.dynamicBlocks.totalWidthPx,height:O.bpPerPx<=1?125:95,className:A.canvas,"data-testid":"seqTrackCanvas"}),T.default.createElement("canvas",{ref:async e=>{await 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Promise.resolve(),b(e)},width:O.dynamicBlocks.totalWidthPx,height:u,className:A.canvas,"data-testid":"canvas"}),T.default.createElement("canvas",{ref:async e=>{await Promise.resolve(),S(e)},width:O.dynamicBlocks.totalWidthPx,height:u,onMouseMove:g,onMouseLeave:m,onMouseDown:h,onMouseUp:y,className:A.canvas,style:{cursor:l??"default"},"data-testid":"overlayCanvas"}),O.displayedRegions.flatMap(((e,t)=>{const o=M.get(e.assemblyName);return[..._.apolloDataStore.checkResults.values()].filter((t=>o?.isValidRefName(t.refSeq)&&o.getCanonicalRefName(t.refSeq)===e.refName&&n.doesIntersect2(e.start,e.end,t.start,t.end))).map((n=>{const o=(O.bpToPx({refName:e.refName,coord:n.start,regionNumber:t})?.offsetPx??0)-O.offsetPx,[s]=n.ids;if(!s)return null;let l=0;const u=r.getFeatureLayoutPosition(s);return u&&(l=u.layoutRow+u.featureRow),T.default.createElement(c.Tooltip,{key:n._id,title:n.message},T.default.createElement(c.Avatar,{className:A.avatar,style:{top:l*i,left:o,height:i,width:i,pointerEvents:a?"none":"auto"}},T.default.createElement(vF,null)))}))})),T.default.createElement(d.Menu,{open:R.length>0,onMenuItemClick:(e,t)=>{t(),I([])},onClose:()=>{I([])},TransitionProps:{onExit:()=>{I([])}},anchorReference:"anchorPosition",anchorPosition:C?{top:C[1],left:C[0]}:void 0,style:{zIndex:t.zIndex.tooltip},menuItems:R}))))})),wF=p.observer((function({model:e}){const{height:t}=e;return T.default.createElement("div",{style:{position:"absolute",left:0,top:t/2,width:"100%"}},T.default.createElement("hr",{style:{margin:0,top:0,color:"black"}}))})),SF=u.makeStyles()((e=>({shading:{background:c.alpha(e.palette.primary.main,.2),overflowY:"scroll",overflowX:"hidden"},details:{background:e.palette.background.paper},accordionControl:{height:12,width:"100%","&:hover":{background:e.palette.action.hover},display:"flex",alignItems:"center",justifyContent:"center"},accordionRoot:{background:e.palette.divider},resizeHandle:{width:"100%",height:4,position:"absolute",cursor:"row-resize",zIndex:100},expandIcon:{},title:{userSelect:"none"},alertContainer:{display:"flex",alignItems:"center",justifyContent:"center"}}))),xF=({onResize:e})=>{const{classes:t}=SF(),n=f.useCallback((t=>{t.stopPropagation(),t.preventDefault(),e(t.movementY)}),[e]),r=f.useCallback((e=>{e.stopPropagation(),e.preventDefault(),globalThis.removeEventListener("mousemove",n),globalThis.removeEventListener("mouseup",r),globalThis.removeEventListener("mouseleave",r)}),[n]);return T.default.createElement("div",{onMouseDown:e=>{e.stopPropagation(),globalThis.addEventListener("mousemove",n),globalThis.addEventListener("mouseup",r),globalThis.addEventListener("mouseleave",r)},onClick:e=>{e.stopPropagation(),e.preventDefault()},className:t.resizeHandle})},EF=p.observer((function({onClick:e,onResize:t,open:n,title:r}){const{classes:o}=SF();return T.default.createElement("div",{className:o.accordionRoot},n&&t?T.default.createElement(xF,{onResize:t}):null,T.default.createElement("div",{className:o.accordionControl,onClick:e},T.default.createElement(n?mF:iT,{className:o.expandIcon}),r?T.default.createElement(c.Typography,{className:o.title,variant:"caption",component:"span"},r):null))})),kF=p.observer((function({model:e,...t}){const r=n.getSession(e),{ontologyManager:o}=r.apolloDataStore,{featureTypeOntology:a}=o,i=a?.dataStore,{classes:s}=SF(),{graphical:l,height:u,isShown:d,selectedFeature:p,table:h,tabularEditor:m,toggleShown:g}=e,y=f.useRef(null);f.useEffect((()=>{!function(e,t){const{apolloRowHeight:n,selectedFeature:r}=e;if(t.current&&r){const o=e.getFeatureLayoutPosition(r);o&&t.current.scroll({top:(o.layoutRow+o.featureRow)*n,behavior:"smooth"})}}(e,y)}),[e,p]);const v=t=>{e.setDetailsHeight(e.detailsHeight-t)};if(!i)return T.default.createElement("div",{className:s.alertContainer},T.default.createElement(c.Alert,{severity:"error"},"Could not load feature type ontology."));if(l&&h){const n=m.isShown?e.detailsHeight:0,r=d?u-e.detailsHeight-24:0;return T.default.createElement("div",{style:{height:u}},T.default.createElement(EF,{open:d,title:"Graphical",onClick:g}),T.default.createElement("div",{className:s.shading,ref:y,style:{height:r}},T.default.createElement(bF,{model:e,...t})),T.default.createElement(EF,{title:"Table",open:m.isShown,onClick:m.togglePane,onResize:v}),T.default.createElement("div",{className:s.details,style:{height:n}},T.default.createElement(xM,{model:e})))}return l?T.default.createElement("div",{className:s.shading,ref:y,style:{height:u}},T.default.createElement(bF,{model:e,...t})):T.default.createElement("div",{className:s.details,style:{height:u}},T.default.createElement(xM,{model:e}))}));var AF={},OF=Kl.exports;Object.defineProperty(AF,"__esModule",{value:!0});var CF=AF.default=void 0;CF=AF.default=(0,OF(Zl).default)((0,N.default.jsx)("path",{d:"M17 3H5c-1.11 0-2 .9-2 2v14c0 1.1.89 2 2 2h14c1.1 0 2-.9 2-2V7l-4-4zm-5 16c-1.66 0-3-1.34-3-3s1.34-3 3-3 3 1.34 3 3-1.34 3-3 3zm3-10H5V5h10v4z"}),"Save");const NF=l.types.model("JobsManager",{}).views((e=>({get jobStatusWidget(){const{widgets:t}=n.getSession(e);let r=t.get("JobsList");return r||(r=n.getSession(e).addWidget("JobsListWidget","JobsList")),r}}))).actions((e=>({update(t,n,r){e.jobStatusWidget.updateJobStatusMessage(t,n),r&&e.jobStatusWidget.updateJobProgressPct(t,r)},abortJob(t,r){const o=n.getSession(e);if(n.isSessionModelWithWidgets(o)){o.showWidget(e.jobStatusWidget),e.jobStatusWidget.updateJobStatusMessage(t,r??"Aborted unexpectedly");const n=e.jobStatusWidget.jobs.findIndex((e=>e.name===t));e.jobStatusWidget.addAbortedJob({...e.jobStatusWidget.jobs[n]}),e.jobStatusWidget.removeJob(t),o.notify("Job aborted","info")}},runJob(t){const r=n.getSession(e);n.isSessionModelWithWidgets(r)&&(r.showWidget(e.jobStatusWidget),e.jobStatusWidget.addJob(t))},done(t){const r=n.getSession(e);n.isSessionModelWithWidgets(r)&&(r.showWidget(e.jobStatusWidget),e.jobStatusWidget.removeJob(t.name),e.jobStatusWidget.addFinishedJob({name:t.name,statusMessage:"All operations successful",progressPct:100,cancelCallback:t.cancelCallback}))}})));class RF{clientStore;constructor(e){this.clientStore=e}}class TF{dataStore;constructor(e){this.dataStore=e}recentChanges=[];async submit(e,t={}){const{addToRecents:r=!0,submitToBackend:o=!0,updateJobsManager:a=!1}=t,i=n.getSession(this.dataStore),s=new AbortController,{jobsManager:l}=n.getSession(this.dataStore),c={name:e.typeName,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{s.abort()}};a&&l.runJob(c);const u=await er.validationRegistry.frontendPreValidate(e);if(!u.ok){const e=`Pre-validation failed: "${u.resultsMessages}"`;return a&&l.abortJob(c.name,e),void i.notify(e,"error")}try{await e.execute(this.dataStore)}catch(e){return a&&l.abortJob(c.name,String(e)),console.error(e),void i.notify(String(e),"error")}if((await er.validationRegistry.frontendPostValidate(e,this.dataStore)).ok||await this.revert(e),o){a&&l.update(c.name,"Submitting to driver");const{collaborationServerDriver:n,getBackendDriver:r}=this.dataStore,o=B.isAssemblySpecificChange(e)?r(e.assembly):n;let s;try{s=await o.submitChange(e,t)}catch(t){return a&&l.abortJob(c.name,String(t)),console.error(t),i.notify(String(t),"error"),void await this.revert(e,!1)}if(!s.ok){const t=`Post-validation failed: "${u.resultsMessages}"`;return a&&l.abortJob(c.name,t),i.notify(t,"error"),void await this.revert(e,!1)}e.notification&&i.notify(e.notification,"success")}r&&this.recentChanges.push(e),a&&l.done(c)}async revert(e,t=!0){const n=e.getInverse();return this.submit(n,{submitToBackend:t,addToRecents:!1})}async revertLastChange(){const e=this.recentChanges.pop();if(e)return this.revert(e);n.getSession(this.dataStore).notify("No changes to undo!","warning")}}class IF extends RF{inFlight=new Map;async fetch(e,t,n){return e.getFetcher({locationType:"UriLocation",uri:t.toString()})(t,n)}async searchFeatures(e,t){const n=this.clientStore.getInternetAccount(t[0]),{baseURL:r}=n,o=new URL("features/searchFeatures",r),a=new URLSearchParams({assemblies:t.join(","),term:e});o.search=a.toString();const i=o.toString(),s=await this.fetch(n,i);if(!s.ok){const e=await bd(s,"searchFeatures failed");throw new Error(e)}return s.json()}async getFeatures(e){const{assemblyName:t,end:o,refName:a,start:i}=e,{assemblyManager:s}=n.getSession(this.clientStore),l=s.get(t);if(!l)throw new Error(`Could not find assembly with name "${t}"`);const{ids:c}=r.getConf(l,["sequence","metadata"]),u=c[a];if(!u)throw new Error(`Could not find refSeq "${a}"`);const f=this.clientStore.getInternetAccount(t),{baseURL:d}=f,p=new URL("features/getFeatures",d),h=new URLSearchParams({refSeq:u,start:String(i),end:String(o)});p.search=h.toString();const m=p.toString(),g=await this.fetch(f,m);if(!g.ok){const e=await bd(g,"getFeatures failed");throw new Error(e)}return this.checkSocket(t,a,f),g.json()}checkSocket(e,t,n){const{socket:r}=n,o=n.retrieveToken(),a=`${e}-${t}`,i=new TF(this.clientStore);r.hasListeners(a)||r.on(a,(async e=>{if(n.setLastChangeSequenceNumber(Number(e.changeSequence)),e.userSessionId!==o&&e.channel===a){const t=B.Change.fromJSON(e.changeInfo);await i.submit(t,{submitToBackend:!1})}}))}async getSequence(e){const t=`${e.refName}:${e.start}-${e.end}`,o=this.inFlight.get(t),{assemblyName:a,end:i,refName:s,start:l}=e,{assemblyManager:c}=n.getSession(this.clientStore),u=c.get(a);if(!u)throw new Error(`Could not find assembly with name "${a}"`);const{ids:f}=r.getConf(u,["sequence","metadata"]),d=f[s];if(!d)throw new Error(`Could not find refSeq "${s}"`);if(o)return{seq:await o,refSeq:d};let p=this.clientStore.assemblies.get(a);p||(p=this.clientStore.addAssembly(a));let h=p.refSeqs.get(d);h||(h=p.addRefSeq(d,s));const m=h.getSequence(l,i);if(m.length===i-l)return{seq:m,refSeq:d};const g=this.clientStore.getInternetAccount(a),{baseURL:y}=g,v=new URL("sequence",y),_=new URLSearchParams({refSeq:d,start:String(l),end:String(i)});v.search=_.toString();const b=v.toString(),w=this.getSeqFromServer(g,b,h,l,i);this.inFlight.set(t,w);const S=await w;return this.checkSocket(a,s,g),this.inFlight.delete(t),{seq:S,refSeq:d}}async getSeqFromServer(e,t,n,r,o){const a=await this.fetch(e,t);if(!a.ok){let e;try{e=await a.text()}catch{e=""}throw new Error(`getSequence failed: ${a.status} (${a.statusText})${e?` (${e})`:""}`)}const i=await a.text();return n.addSequence({sequence:i,start:r,stop:o}),i}async getRefNameAliases(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,a=new URL("refSeqs",o),i=new URLSearchParams({assembly:e});a.search=i.toString();const s=a.toString(),l=await this.fetch(r,s);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}return(await l.json()).map((e=>({refName:e.name,aliases:[e._id,...e.aliases],uniqueId:`alias-${e._id}`})))}async getRegions(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,a=new URL("refSeqs",o),i=new URLSearchParams({assembly:e});a.search=i.toString();const s=a.toString(),l=await this.fetch(r,s);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRegions failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}return(await l.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=n.getSession(this.clientStore);return t.assemblies.filter((t=>{const n=r.getConf(t,["sequence","metadata"]);return!(!(n&&n.apollo&&n.internetAccountConfigId)||e&&n.internetAccountConfigId!==e)}))}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:o}=r,a=new URL("changes",o).href,i=await this.fetch(r,a,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!i.ok){const e=await bd(i,"submitChange failed");throw new Error(e)}const s=new er.ValidationResultSet;return i.ok||(s.ok=!1),s}}class PF extends RF{async getFeatures(){return[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,a=this.clientStore.assemblies.get(t);if(!a)return{seq:"",refSeq:r};const i=a.refSeqs.get(r);return i?{seq:i.getSequence(o,n),refSeq:r}:{seq:"",refSeq:r}}async getRefNameAliases(e){const t=this.clientStore.assemblies.get(e),n=[];if(!t)return n;for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getRegions(e){const t=this.clientStore.assemblies.get(e);if(!t)return[];const n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.file&&!t.internetAccountConfigId)}))}async submitChange(e,t={}){const{clientStore:n}=this,{assemblies:r}=n;n.clearCheckResults();for(const[,e]of r)if("InMemoryFileDriver"===e.backendDriverType){const t=await gd(e);n.addCheckResults(t)}return new er.ValidationResultSet}async searchFeatures(e,t){return[]}}class MF extends RF{async loadAssembly(e){const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e);if(!o)throw new Error(`Assembly ${e} not found`);const{file:a}=r.getConf(o,["sequence","metadata"]),i=require("node:fs");return md(e,await i.promises.readFile(a,"utf8"),this.clientStore)}async getAssembly(e){let t=this.clientStore.assemblies.get(e);return t||(t=await this.loadAssembly(e)),t}async getRefNameAliases(e){const t=await this.getAssembly(e),n=[];for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getFeatures(e){return await this.getAssembly(e.assemblyName),[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,a=(await this.getAssembly(t)).refSeqs.get(r);if(!a)throw new Error(`refSeq ${r} not found in client data store`);return{seq:a.getSequence(o,n),refSeq:r}}async getRegions(e){const t=await this.getAssembly(e),n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.internetAccountConfigId&&t.file)}))}async submitChange(e){if(!B.isAssemblySpecificChange(e))throw new Error(`Cannot use this type of change with local file: "${e.typeName}"`);const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e.assembly);if(!o)throw new Error(`Could not find assembly with name "${e.assembly}"`);const{file:a}=r.getConf(o,["sequence","metadata"]),i=this.clientStore.assemblies.get(e.assembly);if(!i)throw new Error(`Could not find assembly in client with name "${e.assembly}"`);const s=new Set(...i.refSeqs.keys()),{checkResults:c}=this.clientStore;for(const e of c.values())s.has(e.refSeq)&&c.delete(e._id);const u=await gd(i);this.clientStore.addCheckResults(u);const f=[{directive:"gff-version",value:"3"}];for(const[,e]of i.refSeqs)f.push({directive:"sequence-region",value:`${e.name} 1 ${e.sequence[0].stop}`});for(const e of i.comments)f.push({comment:e});for(const[,e]of i.refSeqs){const{features:t}=e;for(const[,e]of t)f.push(er.annotationFeatureToGFF3(l.getSnapshot(e)))}for(const[,e]of i.refSeqs){const[t]=e.sequence,n=er.splitStringIntoChunks(t.sequence,80).join("\n");f.push({id:e.name,description:e.description,sequence:n})}const d=hd.formatSync(f),p=require("node:fs");return await p.promises.writeFile(a,d,"utf8"),new er.ValidationResultSet}async searchFeatures(e,t){return[]}}function FF(e,t){const o=new AbortController,{signal:a}=o,i=e.evaluateExtensionPoint("Apollo-extendAnnotationFeature",NT.AnnotationFeatureModel),c=function(e){return l.types.model("ClientDataStore",{typeName:l.types.optional(l.types.literal("Client"),"Client"),assemblies:l.types.map(NT.ApolloAssembly),checkResults:l.types.map(NT.CheckResult),ontologyManager:l.types.optional(qN,{})}).views((t=>({get internetAccounts(){return l.getRoot(t).internetAccounts},get pluginConfiguration(){return l.getRoot(t).jbrowse.configuration.ApolloPlugin},getFeature:n=>l.resolveIdentifier(e,t.assemblies,n)}))).actions((e=>({addAssembly(t,n){const r={_id:t,refSeqs:{}};return n&&(r.backendDriverType=n),e.assemblies.put(r)},addFeature(t,n){const r=e.assemblies.get(t);if(!r)throw new Error(`Could not find assembly "${t}" to add feature "${n._id}"`);const o=r.refSeqs.get(n.refSeq);if(!o)throw new Error(`Could not find refSeq "${n.refSeq}" to add feature "${n._id}"`);o.features.put(n)},deleteFeature(t){const n=e.getFeature(t);if(!n)throw new Error(`Could not find feature "${t}" to delete`);const{_id:r,parent:o}=n;o?o.deleteChild(t):l.getParentOfType(n,NT.ApolloRefSeq).deleteFeature(r)},deleteAssembly(t){e.assemblies.delete(t)},addCheckResult(t){e.checkResults.put(t)},addCheckResults(t){for(const n of t)e.checkResults.has(n._id)||e.checkResults.put(n)},deleteCheckResult(t){e.checkResults.delete(t)},clearCheckResults(){e.checkResults.clear()}}))).volatile((e=>({changeManager:new TF(e),collaborationServerDriver:new IF(e),inMemoryFileDriver:new PF(e),desktopFileDriver:n.isElectron?new MF(e):void 0}))).actions((e=>({afterCreate(){l.addDisposer(e,s.autorun((()=>{const{ontologyManager:t,pluginConfiguration:o}=e,a=o.ontologies;for(const o of a||[]){const[a,i,s,l]=[r.readConfObject(o,"name"),r.readConfObject(o,"version"),r.readConfObject(o,"source"),r.readConfObject(o,"textIndexFields")];if(!t.findOntology(a)){const r=n.getSession(e),{jobsManager:o}=r,c=new AbortController,u=`Loading ontology "${a}"`,f={name:u,statusMessage:`Loading ontology "${a}", version "${i}", this may take a while`,progressPct:0,cancelCallback:()=>{c.abort(),o.abortJob(f.name)}};t.addOntology(a,i,s,{textIndexing:{indexFields:l},update:(e,t)=>{0!==t?100!==t?o.update(u,e,t):o.done(f):o.runJob(f)}})}}})))}}))).views((e=>({getBackendDriver(t){if(!t)return e.collaborationServerDriver;const o=n.getSession(e),{assemblyManager:a}=o,i=a.get(t);if(!i)return e.collaborationServerDriver;const{file:s,internetAccountConfigId:l}=r.getConf(i,["sequence","metadata"]);return n.isElectron&&s?e.desktopFileDriver:l?e.collaborationServerDriver:e.inMemoryFileDriver},getInternetAccount(t,o){if(!(t??o))throw new Error("Must provide either assemblyName or internetAccountId");let a=o;if(t&&!a){const{assemblyManager:o}=n.getSession(e),i=o.get(t);if(!i)throw new Error(`No assembly found with name ${t}`);({internetAccountConfigId:a}=r.getConf(i,["sequence","metadata"]))}const{internetAccounts:i}=e,s=i.find((e=>e.internetAccountId===a));if(!s)throw new Error(`No InternetAccount found with config id ${o}`);return s}}))).actions((e=>({loadFeatures:l.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const[r,o]=yield t.getFeatures(n);if(0===r.length)continue;const{assemblyName:a,refName:i}=n;let s=e.assemblies.get(a);s||(s=e.assemblies.put({_id:a,refSeqs:{}}));const[l]=r;let c=s.refSeqs.get(l.refSeq);c||(c=s.refSeqs.put({_id:l.refSeq,name:i,features:{}}));for(const e of r)c.features.has(e._id)||c.features.put(e);e.addCheckResults(o)}})),loadRefSeq:l.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const{refSeq:r,seq:o}=yield t.getSequence(n),{assemblyName:a,end:i,refName:s,start:l}=n;let c=e.assemblies.get(a);c||(c=e.assemblies.put({_id:a,refSeqs:{}}));let u=c.refSeqs.get(r);u||(u=c.refSeqs.put({_id:r,name:s,sequence:[]})),u.addSequence({start:l,stop:i,sequence:o})}}))})))}(i),u=t.props({apolloDataStore:l.types.optional(c,{typeName:"Client"}),apolloSelectedFeature:l.types.safeReference(i),jobsManager:l.types.optional(NF,{})}).extend((()=>{const e=s.observable.array([]);return{views:{get collaborators(){return e}},actions:{addOrUpdateCollaborator(t){const n=e.find((e=>e.id===t.id));n?n.locations=t.locations:e.push(t)}}}})).actions((e=>({apolloSetSelectedFeature(t){e.apolloSelectedFeature=t},addApolloTrackConfig(t,n){const o=`apollo_track_${t.name}`;e.tracks.some((e=>e.trackId===o))||e.addTrackConf({type:"ApolloTrack",trackId:o,name:`Annotations (${r.getConf(t,"displayName")||t.name})`,assemblyNames:[t.name],textSearching:{textSearchAdapter:{type:"ApolloTextSearchAdapter",trackId:o,assemblyNames:[t.name],textSearchAdapterId:`apollo_search_${t.name}`,...n?{baseURL:{uri:n,locationType:"UriLocation"}}:{}}},displays:[{type:"LinearApolloDisplay",displayId:`${o}-LinearApolloDisplay`},{type:"SixFrameFeatureDisplay",displayId:`${o}-SixFrameFeatureDisplay`}]})},broadcastLocations(){const{internetAccounts:t}=l.getRoot(e),n=[];for(const t of e.views){if("LinearGenomeView"!==t.type)return;const r=t;if(r.initialized){const{dynamicBlocks:t}=r;t.forEach((t=>{if(void 0!==t.regionNumber){const{assemblyName:r,end:o,refName:a,start:i}=t,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&n.push({assemblyName:r,refName:a,start:i,end:o})}}))}}if(0===n.length){for(const e of t)"baseURL"in e&&e.postUserLocation([]);return}const r=[];for(const e of t)if("baseURL"in e){for(const e of n)r.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(r)}}}))).actions((e=>({afterCreate:l.flow((function*(){const t=l.getSnapshot(e),{id:n,name:r}=t;l.applySnapshot(e,{name:r,id:n});const{internetAccounts:o,jbrowse:i}=l.getRoot(e);s.autorun((()=>{const t=[];for(const n of e.views){if("LinearGenomeView"!==n.type)return;const r=n;if(r.initialized){const{dynamicBlocks:n}=r;n.forEach((n=>{if(void 0!==n.regionNumber){const{assemblyName:r,end:o,refName:a,start:i}=n,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&t.push({assemblyName:r,refName:a,start:i,end:o})}}))}}if(0===t.length){for(const e of o)"baseURL"in e&&e.postUserLocation([]);return}const n=[];for(const e of o)if("baseURL"in e){for(const e of t)n.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(n)}}),{name:"ApolloSession"});for(const n of o){if("ApolloInternetAccount"!==n.type)continue;const{baseURL:r}=n,o=new URL("jbrowse/config.json",r).href,s=n.getFetcher({locationType:"UriLocation",uri:o});let c,u;try{c=yield s(o,{signal:a})}catch(e){console.error(e);continue}if(c.ok){try{u=yield c.json()}catch(e){console.error(e);continue}l.applySnapshot(i,u),l.applySnapshot(e,t)}else{const e=yield bd(c,"Failed to fetch assemblies");console.error(e)}}})),beforeDestroy(){o.abort("destroying session model")}}))).views((e=>{const t=e.getTrackActionMenuItems;return{getTrackActionMenuItems(n){if("ApolloTrack"===n.type||"ReferenceSequenceTrack"===n.type)return t?.(n);const o=r.readConfObject(n,"trackId");return o.endsWith("-sessionTrack")?[...t?.(n)??[],{label:"Save track to Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=l.getRoot(e),a=l.getSnapshot(r);let i;i=er.filterJBrowseConfig(a),0===Object.keys(i).length&&(i=void 0);const s={...l.getSnapshot(n),trackId:o.slice(0,o.length-13)};for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new er.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:i?.tracks&&[...i.tracks,s]}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track added","success")}e.deleteTrackConf(n),r.addTrackConf(s)},icon:CF}]:[...t?.(n)??[],{label:"Remove track from Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=l.getRoot(e),a=l.getSnapshot(r);let i;i=er.filterJBrowseConfig(a),0===Object.keys(i).length&&(i=void 0);const s=i?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new er.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:s}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track removed","success")}e.deleteTrackConf(n),r.deleteTrackConf(n)},icon:CF}]}}}));return l.types.snapshotProcessor(u,{postProcessor(e,t){e.apolloSelectedFeature=void 0;const n=Object.fromEntries(Object.entries(e.apolloDataStore.assemblies).filter((([,e])=>"InMemoryFileDriver"===e.backendDriverType)));if(e.apolloDataStore={typeName:"Client",assemblies:n,checkResults:{}},!t)return e;const{apolloDataStore:r}=t,{checkResults:o}=r;for(const[,t]of o){const[n]=t.ids;if(!n)continue;const o=r.assemblies.get(n.assemblyId);o&&"InMemoryFileDriver"===o.backendDriverType&&(e.apolloDataStore.checkResults[t._id]=l.getSnapshot(t))}return e}})}const jF={0:2,1:1,2:0},LF={3:0,4:1,5:2};function DF(e,t){const o=e.getPlugin("LinearGenomeViewPlugin"),{BaseLinearDisplay:a}=o.exports;return a.named("SixFrameFeatureDisplay").props({type:l.types.literal("SixFrameFeatureDisplay"),configuration:r.ConfigurationReference(t),apolloRowHeight:20,detailsMinHeight:200,showStartCodons:!1,showStopCodons:!0,showIntronLines:!0}).volatile((()=>({apolloFeatureUnderMouse:void 0,apolloRowUnderMouse:void 0}))).views((e=>{const{configuration:t,renderProps:n}=e;return{renderProps:()=>({...n(),...x.getParentRenderProps(e),config:t.renderer})}})).views((e=>({get regions(){let t;try{({blockDefinitions:t}=e)}catch{return[]}return t.contentBlocks.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))},regionCannotBeRendered(){const t=n.getContainingView(e);if(t&&t.bpPerPx>=200)return"Zoom in to see annotations"},get session(){return n.getSession(e)}}))).actions((e=>{let t=[];return{afterAttach(){l.addDisposer(e,s.autorun((()=>{const r=n.getSession(e);if(n.getContainingView(e).initialized){if(e.regionCannotBeRendered())return;const n=[],o=[];for(const r of e.blockDefinitions.contentBlocks)n.push(r.key),t.includes(r.key)||o.push(r);r.apolloDataStore.loadFeatures(o.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))),r.apolloDataStore.loadRefSeq(o.map((({assemblyName:e,end:t,refName:n,start:r})=>({assemblyName:e,refName:n,start:r,end:t})))),t=n}}),{name:"SixFrameFeatureDisplay"}))}}})).views((e=>({get rendererTypeName(){return e.configuration.renderer.type},get changeManager(){return n.getSession(e).apolloDataStore.changeManager},get sequence(){const{regions:t}=e,r=n.getSession(e),o=new Map;for(const e of t){const t=r.apolloDataStore.assemblies.get(e.assemblyName),n=t?.getByRefName(e.refName),a=n?.getSequence(e.start,e.end);o.set(e.start,a??"")}return o},get features(){const{regions:t}=e,r=n.getSession(e),o=new Map;for(const e of t){const t=r.apolloDataStore.assemblies.get(e.assemblyName),n=t?.getByRefName(e.refName);let a=o.get(e.refName);a||(a=new Map,o.set(e.refName,a));for(const[t,r]of n?.features.entries()??new Map)e.start<r.end&&e.end>r.start&&a.set(t,r)}return o},get featuresMinMax(){const e={};for(const[t,n]of this.features||[]){let r,o;for(const[,e]of n)void 0===r&&({min:r}=e),void 0===o&&({max:o}=e),e.min<r&&({min:r}=e),e.max>o&&({max:o}=e);void 0!==r&&void 0!==o&&(e[t]=[r,o])}return e},get codonLayout(){const e=new Map;let t="",r=0;for(const[e,n]of this.sequence||[])n&&(t||(r=e),t+=n);for(let o=0;o<6;o++){const a=[],i=[],s=o in LF;let l,c,u;s?(l=(t.length+r)%3,c=(LF[o]+l+3)%3,u=n.reverse(t).slice(c)):(l=3-r%3,c=(jF[o]+l+3)%3,u=t.slice(c));for(let e=0;e<u.length;e+=3){const t=u.slice(e,e+3),o=s?n.reverse(n.revcom(t)):t,l=s?r+u.length-(3+e):r+e+c;n.defaultStarts.includes(o.toUpperCase())?a.push(l):n.defaultStops.includes(o.toUpperCase())&&i.push(l)}e.set(o,{starts:a,stops:i})}return e},get featureLayout(){const{featureTypeOntology:t}=e.session.apolloDataStore.ontologyManager;if(!t)throw new Error("featureTypeOntology is undefined");const n=new Map;for(const[e,r]of this.features||[]){if(!r)continue;const o=this.featuresMinMax[e];if(!o)continue;const[a,i]=o,s=[],l=6;for(let e=0;e<l;e++){const e=s.length;s[e]=Array.from({length:i-a}),n.set(e,[])}for(const e of[...r.values()].sort(((e,t)=>{const{max:n,min:r}=e,{max:o,min:a}=t;return r-a||n-o})))for(const[,r]of e.children??new Map)if(t.isTypeOf(r.type,"transcript")||t.isTypeOf(e.type,"pseudogenic_transcript"))for(const[,o]of r.children||new Map){let a;if(t.isTypeOf(o.type,"CDS")){let t;o.discontinuousLocations.length>0?({discontinuousLocations:t}=o):t=[o];for(const o of t){const 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T=function(e){if(0===e.length)return[];e.sort((function(e,t){return e.min-t.min}));var t=[];t.push(e[0]);for(var n=1;n<e.length;n++){var r=t.at(-1),o=e[n];r&&o.min<=r.max?r.max=Math.max(r.max,o.max):t.push(o)}return t}(p);if(o){var I,P=be(T);try{for(P.s();!(I=P.n()).done;){var M=I.value;o.includes(M._id)||o.push(M._id)}}catch(e){P.e(e)}finally{P.f()}}return T}(s,l,c,m[0].refSeq,r),_=be(b);try{for(_.s();!(v=_.n()).done;){var w=v.value;o[w._id]=w}}catch(e){_.e(e)}finally{_.f()}}return Object.keys(o).length>0?o:void 0}}(t,n,r),h=function(e){var t={},n=e.map((function(e){return e.score})).filter((function(e){return null!==e})),r=e.map((function(e){return e.source})).filter((function(e){return null!==e})),o=e.map((function(e){return e.attributes})).filter((function(e){return null!==e}));if(n.length>0){var a=fe(n,1)[0];n.length>1&&(a=n.reduce((function(e,t){return e+t}),0)/n.length),t.gff_score=[String(a)]}if(r.length>0){var i=fe(r,1)[0];r.length>1&&(i=pe(new 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n,r,o=e.max_chain_length,a=e.strstart,i=e.prev_length,s=e.nice_match,l=e.strstart>e.w_size-ea?e.strstart-(e.w_size-ea):0,c=e.window,u=e.w_mask,f=e.prev,d=e.strstart+Qo,p=c[a+i-1],h=c[a+i];e.prev_length>=e.good_match&&(o>>=2),s>e.lookahead&&(s=e.lookahead);do{if(c[(n=t)+i]===h&&c[n+i-1]===p&&c[n]===c[a]&&c[++n]===c[a+1]){a+=2,n++;do{}while(c[++a]===c[++n]&&c[++a]===c[++n]&&c[++a]===c[++n]&&c[++a]===c[++n]&&c[++a]===c[++n]&&c[++a]===c[++n]&&c[++a]===c[++n]&&c[++a]===c[++n]&&a<d);if(r=Qo-(d-a),a=d-Qo,r>i){if(e.match_start=t,i=r,r>=s)break;p=c[a+i-1],h=c[a+i]}}}while((t=f[t&u])>l&&0!=--o);return i<=e.lookahead?i:e.lookahead}function pa(e){var t,n,r,o,a,i,s,l,c,u,f=e.w_size;do{if(o=e.window_size-e.lookahead-e.strstart,e.strstart>=f+(f-ea)){Do.arraySet(e.window,e.window,f,f,0),e.match_start-=f,e.strstart-=f,e.block_start-=f,t=n=e.hash_size;do{r=e.head[--t],e.head[t]=r>=f?r-f:0}while(--n);t=n=f;do{r=e.prev[--t],e.prev[t]=r>=f?r-f:0}while(--n);o+=f}if(0===e.strm.avail_in)break;if(s=e.window,l=e.strstart+e.lookahead,u=void 0,(u=(i=e.strm).avail_in)>(c=o)&&(u=c),n=0===u?0:(i.avail_in-=u,Do.arraySet(s,i.input,i.next_in,u,l),1===i.state.wrap?i.adler=qo(i.adler,s,u,l):2===i.state.wrap&&(i.adler=Bo(i.adler,s,u,l)),i.next_in+=u,i.total_in+=u,u),e.lookahead+=n,e.lookahead+e.insert>=Xo)for(e.ins_h=e.window[a=e.strstart-e.insert],e.ins_h=(e.ins_h<<e.hash_shift^e.window[a+1])&e.hash_mask;e.insert&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[a+Xo-1])&e.hash_mask,e.prev[a&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=a,a++,e.insert--,!(e.lookahead+e.insert<Xo)););}while(e.lookahead<ea&&0!==e.strm.avail_in)}function ha(e,t){var n=65535;for(n>e.pending_buf_size-5&&(n=e.pending_buf_size-5);;){if(e.lookahead<=1){if(pa(e),0===e.lookahead&&t===zo)return 1;if(0===e.lookahead)break}e.strstart+=e.lookahead,e.lookahead=0;var r=e.block_start+n;if((0===e.strstart||e.strstart>=r)&&(e.lookahead=e.strstart-r,e.strstart=r,ca(e,!1),0===e.strm.avail_out))return 1;if(e.strstart-e.block_start>=e.w_size-ea&&(ca(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):(e.strstart>e.block_start&&ca(e,!1),1)}function ma(e,t){for(var n,r;;){if(e.lookahead<ea){if(pa(e),e.lookahead<ea&&t===zo)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=Xo&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Xo-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),0!==n&&e.strstart-n<=e.w_size-ea&&(e.match_length=da(e,n)),e.match_length>=Xo)if(r=Lo._tr_tally(e,e.strstart-e.match_start,e.match_length-Xo),e.lookahead-=e.match_length,e.match_length<=e.max_lazy_match&&e.lookahead>=Xo){e.match_length--;do{e.strstart++,e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Xo-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart}while(0!=--e.match_length);e.strstart++}else e.strstart+=e.match_length,e.match_length=0,e.ins_h=e.window[e.strstart],e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+1])&e.hash_mask;else r=Lo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++;if(r&&(ca(e,!1),0===e.strm.avail_out))return 1}return e.insert=e.strstart<Xo-1?e.strstart:Xo-1,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(ca(e,!1),0===e.strm.avail_out)?1:2}function ga(e,t){for(var n,r,o;;){if(e.lookahead<ea){if(pa(e),e.lookahead<ea&&t===zo)return 1;if(0===e.lookahead)break}if(n=0,e.lookahead>=Xo&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Xo-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart),e.prev_length=e.match_length,e.prev_match=e.match_start,e.match_length=Xo-1,0!==n&&e.prev_length<e.max_lazy_match&&e.strstart-n<=e.w_size-ea&&(e.match_length=da(e,n),e.match_length<=5&&(1===e.strategy||e.match_length===Xo&&e.strstart-e.match_start>4096)&&(e.match_length=Xo-1)),e.prev_length>=Xo&&e.match_length<=e.prev_length){o=e.strstart+e.lookahead-Xo,r=Lo._tr_tally(e,e.strstart-1-e.prev_match,e.prev_length-Xo),e.lookahead-=e.prev_length-1,e.prev_length-=2;do{++e.strstart<=o&&(e.ins_h=(e.ins_h<<e.hash_shift^e.window[e.strstart+Xo-1])&e.hash_mask,n=e.prev[e.strstart&e.w_mask]=e.head[e.ins_h],e.head[e.ins_h]=e.strstart)}while(0!=--e.prev_length);if(e.match_available=0,e.match_length=Xo-1,e.strstart++,r&&(ca(e,!1),0===e.strm.avail_out))return 1}else if(e.match_available){if((r=Lo._tr_tally(e,0,e.window[e.strstart-1]))&&ca(e,!1),e.strstart++,e.lookahead--,0===e.strm.avail_out)return 1}else e.match_available=1,e.strstart++,e.lookahead--}return e.match_available&&(r=Lo._tr_tally(e,0,e.window[e.strstart-1]),e.match_available=0),e.insert=e.strstart<Xo-1?e.strstart:Xo-1,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(ca(e,!1),0===e.strm.avail_out)?1:2}function ya(e,t,n,r,o){this.good_length=e,this.max_lazy=t,this.nice_length=n,this.max_chain=r,this.func=o}function va(){this.strm=null,this.status=0,this.pending_buf=null,this.pending_buf_size=0,this.pending_out=0,this.pending=0,this.wrap=0,this.gzhead=null,this.gzindex=0,this.method=$o,this.last_flush=-1,this.w_size=0,this.w_bits=0,this.w_mask=0,this.window=null,this.window_size=0,this.prev=null,this.head=null,this.ins_h=0,this.hash_size=0,this.hash_bits=0,this.hash_mask=0,this.hash_shift=0,this.block_start=0,this.match_length=0,this.prev_match=0,this.match_available=0,this.strstart=0,this.match_start=0,this.lookahead=0,this.prev_length=0,this.max_chain_length=0,this.max_lazy_match=0,this.level=0,this.strategy=0,this.good_match=0,this.nice_match=0,this.dyn_ltree=new Do.Buf16(2*Ko),this.dyn_dtree=new Do.Buf16(2*(2*Jo+1)),this.bl_tree=new Do.Buf16(2*(2*Yo+1)),sa(this.dyn_ltree),sa(this.dyn_dtree),sa(this.bl_tree),this.l_desc=null,this.d_desc=null,this.bl_desc=null,this.bl_count=new Do.Buf16(Zo+1),this.heap=new Do.Buf16(2*Vo+1),sa(this.heap),this.heap_len=0,this.heap_max=0,this.depth=new Do.Buf16(2*Vo+1),sa(this.depth),this.l_buf=0,this.lit_bufsize=0,this.last_lit=0,this.d_buf=0,this.opt_len=0,this.static_len=0,this.matches=0,this.insert=0,this.bi_buf=0,this.bi_valid=0}function ba(e){var t;return e&&e.state?(e.total_in=e.total_out=0,e.data_type=Wo,(t=e.state).pending=0,t.pending_out=0,t.wrap<0&&(t.wrap=-t.wrap),t.status=t.wrap?ta:ra,e.adler=2===t.wrap?0:1,t.last_flush=zo,Lo._tr_init(t),Ho):aa(e,Go)}function _a(e){var t,n=ba(e);return n===Ho&&((t=e.state).window_size=2*t.w_size,sa(t.head),t.max_lazy_match=Po[t.level].max_lazy,t.good_match=Po[t.level].good_length,t.nice_match=Po[t.level].nice_length,t.max_chain_length=Po[t.level].max_chain,t.strstart=0,t.block_start=0,t.lookahead=0,t.insert=0,t.match_length=t.prev_length=Xo-1,t.match_available=0,t.ins_h=0),n}function wa(e,t,n,r,o,a){if(!e)return Go;var i=1;if(-1===t&&(t=6),r<0?(i=0,r=-r):r>15&&(i=2,r-=16),o<1||o>9||n!==$o||r<8||r>15||t<0||t>9||a<0||a>4)return aa(e,Go);8===r&&(r=9);var s=new va;return e.state=s,s.strm=e,s.wrap=i,s.gzhead=null,s.w_bits=r,s.w_size=1<<s.w_bits,s.w_mask=s.w_size-1,s.hash_bits=o+7,s.hash_size=1<<s.hash_bits,s.hash_mask=s.hash_size-1,s.hash_shift=~~((s.hash_bits+Xo-1)/Xo),s.window=new Do.Buf8(2*s.w_size),s.head=new Do.Buf16(s.hash_size),s.prev=new Do.Buf16(s.w_size),s.lit_bufsize=1<<o+6,s.pending_buf_size=4*s.lit_bufsize,s.pending_buf=new Do.Buf8(s.pending_buf_size),s.d_buf=1*s.lit_bufsize,s.l_buf=3*s.lit_bufsize,s.level=t,s.strategy=a,s.method=n,_a(e)}Po=[new ya(0,0,0,0,ha),new ya(4,4,8,4,ma),new ya(4,5,16,8,ma),new ya(4,6,32,32,ma),new ya(4,4,16,16,ga),new ya(8,16,32,32,ga),new ya(8,16,128,128,ga),new ya(8,32,128,256,ga),new ya(32,128,258,1024,ga),new ya(32,258,258,4096,ga)],Vr.deflateInit=function(e,t){return wa(e,t,$o,15,8,0)},Vr.deflateInit2=wa,Vr.deflateReset=_a,Vr.deflateResetKeep=ba,Vr.deflateSetHeader=function(e,t){return e&&e.state?2!==e.state.wrap?Go:(e.state.gzhead=t,Ho):Go},Vr.deflate=function(e,t){var n,r,o,a;if(!e||!e.state||t>5||t<0)return e?aa(e,Go):Go;if(r=e.state,!e.output||!e.input&&0!==e.avail_in||r.status===oa&&4!==t)return aa(e,0===e.avail_out?-5:Go);if(r.strm=e,n=r.last_flush,r.last_flush=t,r.status===ta)if(2===r.wrap)e.adler=0,ua(r,31),ua(r,139),ua(r,8),r.gzhead?(ua(r,(r.gzhead.text?1:0)+(r.gzhead.hcrc?2:0)+(r.gzhead.extra?4:0)+(r.gzhead.name?8:0)+(r.gzhead.comment?16:0)),ua(r,255&r.gzhead.time),ua(r,r.gzhead.time>>8&255),ua(r,r.gzhead.time>>16&255),ua(r,r.gzhead.time>>24&255),ua(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),ua(r,255&r.gzhead.os),r.gzhead.extra&&r.gzhead.extra.length&&(ua(r,255&r.gzhead.extra.length),ua(r,r.gzhead.extra.length>>8&255)),r.gzhead.hcrc&&(e.adler=Bo(e.adler,r.pending_buf,r.pending,0)),r.gzindex=0,r.status=69):(ua(r,0),ua(r,0),ua(r,0),ua(r,0),ua(r,0),ua(r,9===r.level?2:r.strategy>=2||r.level<2?4:0),ua(r,3),r.status=ra);else{var i=$o+(r.w_bits-8<<4)<<8;i|=(r.strategy>=2||r.level<2?0:r.level<6?1:6===r.level?2:3)<<6,0!==r.strstart&&(i|=32),i+=31-i%31,r.status=ra,fa(r,i),0!==r.strstart&&(fa(r,e.adler>>>16),fa(r,65535&e.adler)),e.adler=1}if(69===r.status)if(r.gzhead.extra){for(o=r.pending;r.gzindex<(65535&r.gzhead.extra.length)&&(r.pending!==r.pending_buf_size||(r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),la(e),o=r.pending,r.pending!==r.pending_buf_size));)ua(r,255&r.gzhead.extra[r.gzindex]),r.gzindex++;r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),r.gzindex===r.gzhead.extra.length&&(r.gzindex=0,r.status=73)}else r.status=73;if(73===r.status)if(r.gzhead.name){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),la(e),o=r.pending,r.pending===r.pending_buf_size)){a=1;break}a=r.gzindex<r.gzhead.name.length?255&r.gzhead.name.charCodeAt(r.gzindex++):0,ua(r,a)}while(0!==a);r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),0===a&&(r.gzindex=0,r.status=91)}else r.status=91;if(91===r.status)if(r.gzhead.comment){o=r.pending;do{if(r.pending===r.pending_buf_size&&(r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),la(e),o=r.pending,r.pending===r.pending_buf_size)){a=1;break}a=r.gzindex<r.gzhead.comment.length?255&r.gzhead.comment.charCodeAt(r.gzindex++):0,ua(r,a)}while(0!==a);r.gzhead.hcrc&&r.pending>o&&(e.adler=Bo(e.adler,r.pending_buf,r.pending-o,o)),0===a&&(r.status=na)}else r.status=na;if(r.status===na&&(r.gzhead.hcrc?(r.pending+2>r.pending_buf_size&&la(e),r.pending+2<=r.pending_buf_size&&(ua(r,255&e.adler),ua(r,e.adler>>8&255),e.adler=0,r.status=ra)):r.status=ra),0!==r.pending){if(la(e),0===e.avail_out)return r.last_flush=-1,Ho}else if(0===e.avail_in&&ia(t)<=ia(n)&&4!==t)return aa(e,-5);if(r.status===oa&&0!==e.avail_in)return aa(e,-5);if(0!==e.avail_in||0!==r.lookahead||t!==zo&&r.status!==oa){var s=2===r.strategy?function(e,t){for(var n;;){if(0===e.lookahead&&(pa(e),0===e.lookahead)){if(t===zo)return 1;break}if(e.match_length=0,n=Lo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++,n&&(ca(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(ca(e,!1),0===e.strm.avail_out)?1:2}(r,t):3===r.strategy?function(e,t){for(var n,r,o,a,i=e.window;;){if(e.lookahead<=Qo){if(pa(e),e.lookahead<=Qo&&t===zo)return 1;if(0===e.lookahead)break}if(e.match_length=0,e.lookahead>=Xo&&e.strstart>0&&(r=i[o=e.strstart-1])===i[++o]&&r===i[++o]&&r===i[++o]){a=e.strstart+Qo;do{}while(r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&r===i[++o]&&o<a);e.match_length=Qo-(a-o),e.match_length>e.lookahead&&(e.match_length=e.lookahead)}if(e.match_length>=Xo?(n=Lo._tr_tally(e,1,e.match_length-Xo),e.lookahead-=e.match_length,e.strstart+=e.match_length,e.match_length=0):(n=Lo._tr_tally(e,0,e.window[e.strstart]),e.lookahead--,e.strstart++),n&&(ca(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(ca(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(ca(e,!1),0===e.strm.avail_out)?1:2}(r,t):Po[r.level].func(r,t);if(3!==s&&4!==s||(r.status=oa),1===s||3===s)return 0===e.avail_out&&(r.last_flush=-1),Ho;if(2===s&&(1===t?Lo._tr_align(r):5!==t&&(Lo._tr_stored_block(r,0,0,!1),3===t&&(sa(r.head),0===r.lookahead&&(r.strstart=0,r.block_start=0,r.insert=0))),la(e),0===e.avail_out))return 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this.onEnd(n),this.ended=!0,!1;0!==o.avail_out&&(0!==o.avail_in||4!==r&&2!==r)||this.onData("string"===this.options.to?Ia.buf2binstring(Ta.shrinkBuf(o.output,o.next_out)):Ta.shrinkBuf(o.output,o.next_out))}while((o.avail_in>0||0===o.avail_out)&&1!==n);return 4===r?(n=Ra.deflateEnd(this.strm),this.onEnd(n),this.ended=!0,n===ja):2!==r||(this.onEnd(ja),o.avail_out=0,!0)},Ba.prototype.onData=function(e){this.chunks.push(e)},Ba.prototype.onEnd=function(e){e===ja&&(this.result="string"===this.options.to?this.chunks.join(""):Ta.flattenChunks(this.chunks)),this.chunks=[],this.err=e,this.msg=this.strm.msg},$r.Deflate=Ba,$r.deflate=Ua,$r.deflateRaw=function(e,t){return(t=t||{}).raw=!0,Ua(e,t)},$r.gzip=function(e,t){return(t=t||{}).gzip=!0,Ua(e,t)};var za={},Ha={},Ga=Wr,Wa=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],$a=[16,16,16,16,16,16,16,16,17,17,17,17,18,18,18,18,19,19,19,19,20,20,20,20,21,21,21,21,16,72,78],Va=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577,0,0],Ja=[16,16,16,16,17,17,18,18,19,19,20,20,21,21,22,22,23,23,24,24,25,25,26,26,27,27,28,28,29,29,64,64],Ya=Wr,Ka=To,Za=Fo,Xa=function(e,t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k,A;k=e.input,o=(r=e.next_in)+(e.avail_in-5),A=e.output,i=(a=e.next_out)-(t-e.avail_out),s=a+(e.avail_out-257),l=(n=e.state).dmax,c=n.wsize,u=n.whave,f=n.wnext,d=n.window,p=n.hold,h=n.bits,m=n.lencode,g=n.distcode,y=(1<<n.lenbits)-1,v=(1<<n.distbits)-1;e:do{h<15&&(p+=k[r++]<<h,p+=k[r++]<<(h+=8),h+=8),b=m[p&y];t:for(;;){if(p>>>=_=b>>>24,h-=_,0==(_=b>>>16&255))A[a++]=65535&b;else{if(!(16&_)){if(0==(64&_)){b=m[(65535&b)+(p&(1<<_)-1)];continue t}if(32&_){n.mode=12;break 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Ya.Buf8(a.wsize)),r>=a.wsize?(Ya.arraySet(a.window,t,n-a.wsize,a.wsize,0),a.wnext=0,a.whave=a.wsize):((o=a.wsize-a.wnext)>r&&(o=r),Ya.arraySet(a.window,t,n-r,o,a.wnext),(r-=o)?(Ya.arraySet(a.window,t,n-r,r,0),a.wnext=r,a.whave=a.wsize):(a.wnext+=o,a.wnext===a.wsize&&(a.wnext=0),a.whave<a.wsize&&(a.whave+=o))),0}Ha.inflateReset=ui,Ha.inflateReset2=fi,Ha.inflateResetKeep=ci,Ha.inflateInit=function(e){return di(e,15)},Ha.inflateInit2=di,Ha.inflate=function(e,t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k,A=0,C=new Ya.Buf8(4),O=[16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15];if(!e||!e.state||!e.output||!e.input&&0!==e.avail_in)return ti;(n=e.state).mode===ri&&(n.mode=13),i=e.next_out,o=e.output,a=e.next_in,r=e.input,c=n.hold,u=n.bits,f=s=e.avail_in,d=l=e.avail_out,x=ei;e:for(;;)switch(n.mode){case ni:if(0===n.wrap){n.mode=13;break}for(;u<16;){if(0===s)break 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e;s--,c+=r[a++]<<u,u+=8}n.head&&(n.head.time=c),512&n.flags&&(C[0]=255&c,C[1]=c>>>8&255,C[2]=c>>>16&255,C[3]=c>>>24&255,n.check=Za(n.check,C,4,0)),c=0,u=0,n.mode=4;case 4:for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.head&&(n.head.xflags=255&c,n.head.os=c>>8),512&n.flags&&(C[0]=255&c,C[1]=c>>>8&255,n.check=Za(n.check,C,2,0)),c=0,u=0,n.mode=5;case 5:if(1024&n.flags){for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.length=c,n.head&&(n.head.extra_len=c),512&n.flags&&(C[0]=255&c,C[1]=c>>>8&255,n.check=Za(n.check,C,2,0)),c=0,u=0}else n.head&&(n.head.extra=null);n.mode=6;case 6:if(1024&n.flags&&((p=n.length)>s&&(p=s),p&&(n.head&&(S=n.head.extra_len-n.length,n.head.extra||(n.head.extra=new Array(n.head.extra_len)),Ya.arraySet(n.head.extra,r,a,p,S)),512&n.flags&&(n.check=Za(n.check,r,p,a)),s-=p,a+=p,n.length-=p),n.length))break e;n.length=0,n.mode=7;case 7:if(2048&n.flags){if(0===s)break e;p=0;do{S=r[a+p++],n.head&&S&&n.length<65536&&(n.head.name+=String.fromCharCode(S))}while(S&&p<s);if(512&n.flags&&(n.check=Za(n.check,r,p,a)),s-=p,a+=p,S)break e}else n.head&&(n.head.name=null);n.length=0,n.mode=8;case 8:if(4096&n.flags){if(0===s)break e;p=0;do{S=r[a+p++],n.head&&S&&n.length<65536&&(n.head.comment+=String.fromCharCode(S))}while(S&&p<s);if(512&n.flags&&(n.check=Za(n.check,r,p,a)),s-=p,a+=p,S)break e}else n.head&&(n.head.comment=null);n.mode=9;case 9:if(512&n.flags){for(;u<16;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(c!==(65535&n.check)){e.msg="header crc mismatch",n.mode=oi;break}c=0,u=0}n.head&&(n.head.hcrc=n.flags>>9&1,n.head.done=!0),e.adler=n.check=0,n.mode=ri;break;case 10:for(;u<32;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}e.adler=n.check=si(c),c=0,u=0,n.mode=11;case 11:if(0===n.havedict)return e.next_out=i,e.avail_out=l,e.next_in=a,e.avail_in=s,n.hold=c,n.bits=u,2;e.adler=n.check=1,n.mode=ri;case ri:if(5===t||6===t)break e;case 13:if(n.last){c>>>=7&u,u-=7&u,n.mode=27;break}for(;u<3;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}switch(n.last=1&c,u-=1,3&(c>>>=1)){case 0:n.mode=14;break;case 1:if(gi(n),n.mode=20,6===t){c>>>=2,u-=2;break e}break;case 2:n.mode=17;break;case 3:e.msg="invalid block type",n.mode=oi}c>>>=2,u-=2;break;case 14:for(c>>>=7&u,u-=7&u;u<32;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if((65535&c)!=(c>>>16^65535)){e.msg="invalid stored block lengths",n.mode=oi;break}if(n.length=65535&c,c=0,u=0,n.mode=15,6===t)break e;case 15:n.mode=16;case 16:if(p=n.length){if(p>s&&(p=s),p>l&&(p=l),0===p)break e;Ya.arraySet(o,r,a,p,i),s-=p,a+=p,l-=p,i+=p,n.length-=p;break}n.mode=ri;break;case 17:for(;u<14;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(n.nlen=257+(31&c),u-=5,n.ndist=1+(31&(c>>>=5)),u-=5,n.ncode=4+(15&(c>>>=5)),c>>>=4,u-=4,n.nlen>286||n.ndist>30){e.msg="too many length or distance symbols",n.mode=oi;break}n.have=0,n.mode=18;case 18:for(;n.have<n.ncode;){for(;u<3;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.lens[O[n.have++]]=7&c,c>>>=3,u-=3}for(;n.have<19;)n.lens[O[n.have++]]=0;if(n.lencode=n.lendyn,n.lenbits=7,x=Qa(0,n.lens,0,19,n.lencode,0,n.work,E={bits:n.lenbits}),n.lenbits=E.bits,x){e.msg="invalid code lengths set",n.mode=oi;break}n.have=0,n.mode=19;case 19:for(;n.have<n.nlen+n.ndist;){for(;y=(A=n.lencode[c&(1<<n.lenbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(v<16)c>>>=g,u-=g,n.lens[n.have++]=v;else{if(16===v){for(k=g+2;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(c>>>=g,u-=g,0===n.have){e.msg="invalid bit length repeat",n.mode=oi;break}S=n.lens[n.have-1],p=3+(3&c),c>>>=2,u-=2}else if(17===v){for(k=g+3;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}u-=g,S=0,p=3+(7&(c>>>=g)),c>>>=3,u-=3}else{for(k=g+7;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}u-=g,S=0,p=11+(127&(c>>>=g)),c>>>=7,u-=7}if(n.have+p>n.nlen+n.ndist){e.msg="invalid bit length repeat",n.mode=oi;break}for(;p--;)n.lens[n.have++]=S}}if(n.mode===oi)break;if(0===n.lens[256]){e.msg="invalid code -- missing end-of-block",n.mode=oi;break}if(n.lenbits=9,x=Qa(1,n.lens,0,n.nlen,n.lencode,0,n.work,E={bits:n.lenbits}),n.lenbits=E.bits,x){e.msg="invalid literal/lengths set",n.mode=oi;break}if(n.distbits=6,n.distcode=n.distdyn,x=Qa(2,n.lens,n.nlen,n.ndist,n.distcode,0,n.work,E={bits:n.distbits}),n.distbits=E.bits,x){e.msg="invalid distances set",n.mode=oi;break}if(n.mode=20,6===t)break e;case 20:n.mode=21;case 21:if(s>=6&&l>=258){e.next_out=i,e.avail_out=l,e.next_in=a,e.avail_in=s,n.hold=c,n.bits=u,Xa(e,d),i=e.next_out,o=e.output,l=e.avail_out,a=e.next_in,r=e.input,s=e.avail_in,c=n.hold,u=n.bits,n.mode===ri&&(n.back=-1);break}for(n.back=0;y=(A=n.lencode[c&(1<<n.lenbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(y&&0==(240&y)){for(b=g,_=y,w=v;y=(A=n.lencode[w+((c&(1<<b+_)-1)>>b)])>>>16&255,v=65535&A,!(b+(g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}c>>>=b,u-=b,n.back+=b}if(c>>>=g,u-=g,n.back+=g,n.length=v,0===y){n.mode=26;break}if(32&y){n.back=-1,n.mode=ri;break}if(64&y){e.msg="invalid literal/length code",n.mode=oi;break}n.extra=15&y,n.mode=22;case 22:if(n.extra){for(k=n.extra;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.length+=c&(1<<n.extra)-1,c>>>=n.extra,u-=n.extra,n.back+=n.extra}n.was=n.length,n.mode=23;case 23:for(;y=(A=n.distcode[c&(1<<n.distbits)-1])>>>16&255,v=65535&A,!((g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(0==(240&y)){for(b=g,_=y,w=v;y=(A=n.distcode[w+((c&(1<<b+_)-1)>>b)])>>>16&255,v=65535&A,!(b+(g=A>>>24)<=u);){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}c>>>=b,u-=b,n.back+=b}if(c>>>=g,u-=g,n.back+=g,64&y){e.msg="invalid distance code",n.mode=oi;break}n.offset=v,n.extra=15&y,n.mode=24;case 24:if(n.extra){for(k=n.extra;u<k;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}n.offset+=c&(1<<n.extra)-1,c>>>=n.extra,u-=n.extra,n.back+=n.extra}if(n.offset>n.dmax){e.msg="invalid distance too far back",n.mode=oi;break}n.mode=25;case 25:if(0===l)break e;if(n.offset>(p=d-l)){if((p=n.offset-p)>n.whave&&n.sane){e.msg="invalid distance too far back",n.mode=oi;break}h=p>n.wnext?n.wsize-(p-=n.wnext):n.wnext-p,p>n.length&&(p=n.length),m=n.window}else m=o,h=i-n.offset,p=n.length;p>l&&(p=l),l-=p,n.length-=p;do{o[i++]=m[h++]}while(--p);0===n.length&&(n.mode=21);break;case 26:if(0===l)break e;o[i++]=n.length,l--,n.mode=21;break;case 27:if(n.wrap){for(;u<32;){if(0===s)break e;s--,c|=r[a++]<<u,u+=8}if(e.total_out+=d-=l,n.total+=d,d&&(e.adler=n.check=n.flags?Za(n.check,o,d,i-d):Ka(n.check,o,d,i-d)),d=l,(n.flags?c:si(c))!==n.check){e.msg="incorrect data check",n.mode=oi;break}c=0,u=0}n.mode=28;case 28:if(n.wrap&&n.flags){for(;u<32;){if(0===s)break e;s--,c+=r[a++]<<u,u+=8}if(c!==(4294967295&n.total)){e.msg="incorrect length check",n.mode=oi;break}c=0,u=0}n.mode=29;case 29:x=1;break e;case oi:x=-3;break e;case 31:return-4;default:return ti}return e.next_out=i,e.avail_out=l,e.next_in=a,e.avail_in=s,n.hold=c,n.bits=u,(n.wsize||d!==e.avail_out&&n.mode<oi&&(n.mode<27||4!==t))&&yi(e,e.output,e.next_out,d-e.avail_out),d-=e.avail_out,e.total_in+=f-=e.avail_in,e.total_out+=d,n.total+=d,n.wrap&&d&&(e.adler=n.check=n.flags?Za(n.check,o,d,e.next_out-d):Ka(n.check,o,d,e.next_out-d)),e.data_type=n.bits+(n.last?64:0)+(n.mode===ri?128:0)+(20===n.mode||15===n.mode?256:0),(0===f&&0===d||4===t)&&x===ei&&(x=-5),x},Ha.inflateEnd=function(e){if(!e||!e.state)return ti;var t=e.state;return t.window&&(t.window=null),e.state=null,ei},Ha.inflateGetHeader=function(e,t){var n;return e&&e.state?0==(2&(n=e.state).wrap)?ti:(n.head=t,t.done=!1,ei):ti},Ha.inflateSetDictionary=function(e,t){var n,r=t.length;return e&&e.state?0!==(n=e.state).wrap&&11!==n.mode?ti:11===n.mode&&Ka(1,t,r,0)!==n.check?-3:yi(e,t,r,r)?(n.mode=31,-4):(n.havedict=1,ei):ti},Ha.inflateInfo="pako inflate (from Nodeca project)";var vi={Z_NO_FLUSH:0,Z_PARTIAL_FLUSH:1,Z_SYNC_FLUSH:2,Z_FULL_FLUSH:3,Z_FINISH:4,Z_BLOCK:5,Z_TREES:6,Z_OK:0,Z_STREAM_END:1,Z_NEED_DICT:2,Z_ERRNO:-1,Z_STREAM_ERROR:-2,Z_DATA_ERROR:-3,Z_BUF_ERROR:-5,Z_NO_COMPRESSION:0,Z_BEST_SPEED:1,Z_BEST_COMPRESSION:9,Z_DEFAULT_COMPRESSION:-1,Z_FILTERED:1,Z_HUFFMAN_ONLY:2,Z_RLE:3,Z_FIXED:4,Z_DEFAULT_STRATEGY:0,Z_BINARY:0,Z_TEXT:1,Z_UNKNOWN:2,Z_DEFLATED:8},bi=Ha,_i=Wr,wi=Sa,Si=vi,xi=jo,Ei=Na,ki=function(){this.text=0,this.time=0,this.xflags=0,this.os=0,this.extra=null,this.extra_len=0,this.name="",this.comment="",this.hcrc=0,this.done=!1},Ai=Object.prototype.toString;function Ci(e){if(!(this instanceof Ci))return new Ci(e);this.options=_i.assign({chunkSize:16384,windowBits:0,to:""},e||{});var t=this.options;t.raw&&t.windowBits>=0&&t.windowBits<16&&(t.windowBits=-t.windowBits,0===t.windowBits&&(t.windowBits=-15)),!(t.windowBits>=0&&t.windowBits<16)||e&&e.windowBits||(t.windowBits+=32),t.windowBits>15&&t.windowBits<48&&0==(15&t.windowBits)&&(t.windowBits|=15),this.err=0,this.msg="",this.ended=!1,this.chunks=[],this.strm=new Ei,this.strm.avail_out=0;var n=bi.inflateInit2(this.strm,t.windowBits);if(n!==Si.Z_OK)throw new Error(xi[n]);if(this.header=new ki,bi.inflateGetHeader(this.strm,this.header),t.dictionary&&("string"==typeof t.dictionary?t.dictionary=wi.string2buf(t.dictionary):"[object ArrayBuffer]"===Ai.call(t.dictionary)&&(t.dictionary=new Uint8Array(t.dictionary)),t.raw&&(n=bi.inflateSetDictionary(this.strm,t.dictionary))!==Si.Z_OK))throw new Error(xi[n])}function Oi(e,t){var n=new Ci(t);if(n.push(e,!0),n.err)throw n.msg||xi[n.err];return n.result}Ci.prototype.push=function(e,t){var n,r,o,a,i,s=this.strm,l=this.options.chunkSize,c=this.options.dictionary,u=!1;if(this.ended)return!1;r=t===~~t?t:!0===t?Si.Z_FINISH:Si.Z_NO_FLUSH,s.input="string"==typeof e?wi.binstring2buf(e):"[object ArrayBuffer]"===Ai.call(e)?new Uint8Array(e):e,s.next_in=0,s.avail_in=s.input.length;do{if(0===s.avail_out&&(s.output=new _i.Buf8(l),s.next_out=0,s.avail_out=l),(n=bi.inflate(s,Si.Z_NO_FLUSH))===Si.Z_NEED_DICT&&c&&(n=bi.inflateSetDictionary(this.strm,c)),n===Si.Z_BUF_ERROR&&!0===u&&(n=Si.Z_OK,u=!1),n!==Si.Z_STREAM_END&&n!==Si.Z_OK)return this.onEnd(n),this.ended=!0,!1;s.next_out&&(0!==s.avail_out&&n!==Si.Z_STREAM_END&&(0!==s.avail_in||r!==Si.Z_FINISH&&r!==Si.Z_SYNC_FLUSH)||("string"===this.options.to?(o=wi.utf8border(s.output,s.next_out),a=s.next_out-o,i=wi.buf2string(s.output,o),s.next_out=a,s.avail_out=l-a,a&&_i.arraySet(s.output,s.output,o,a,0),this.onData(i)):this.onData(_i.shrinkBuf(s.output,s.next_out)))),0===s.avail_in&&0===s.avail_out&&(u=!0)}while((s.avail_in>0||0===s.avail_out)&&n!==Si.Z_STREAM_END);return n===Si.Z_STREAM_END&&(r=Si.Z_FINISH),r===Si.Z_FINISH?(n=bi.inflateEnd(this.strm),this.onEnd(n),this.ended=!0,n===Si.Z_OK):r!==Si.Z_SYNC_FLUSH||(this.onEnd(Si.Z_OK),s.avail_out=0,!0)},Ci.prototype.onData=function(e){this.chunks.push(e)},Ci.prototype.onEnd=function(e){e===Si.Z_OK&&(this.result="string"===this.options.to?this.chunks.join(""):_i.flattenChunks(this.chunks)),this.chunks=[],this.err=e,this.msg=this.strm.msg},za.Inflate=Ci,za.inflate=Oi,za.inflateRaw=function(e,t){return(t=t||{}).raw=!0,Oi(e,t)},za.ungzip=Oi;var Ni={};(0,Wr.assign)(Ni,$r,za,vi);var Ri=Ni;function Ti(e){return Ii.apply(this,arguments)}function Ii(){return Ii=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:e.prev=0,r=0,o=0,a=[],i=0;case 5:if(l=t.subarray(r),s=new Ri.Inflate,n=s.strm,s.push(l,Ri.Z_SYNC_FLUSH),!s.err){e.next=12;break}throw new Error(s.msg);case 12:r+=n.next_in,a[o]=s.result,i+=a[o].length,o+=1;case 16:if(n.avail_in){e.next=5;break}case 17:for(c=new Uint8Array(i),u=0,f=0;u<a.length;u++)c.set(a[u],f),f+=a[u].length;return e.abrupt("return",Kt.from(c));case 22:if(e.prev=22,e.t0=e.catch(0),!"".concat(e.t0).match(/incorrect header check/)){e.next=26;break}throw new Error("problem decompressing block: incorrect gzip header check");case 26:throw e.t0;case 27:case"end":return e.stop()}}),e,null,[[0,22]])}))),Ii.apply(this,arguments)}var Pi=null;try{Pi=new WebAssembly.Instance(new WebAssembly.Module(new Uint8Array([0,97,115,109,1,0,0,0,1,13,2,96,0,1,127,96,4,127,127,127,127,1,127,3,7,6,0,1,1,1,1,1,6,6,1,127,1,65,0,11,7,50,6,3,109,117,108,0,1,5,100,105,118,95,115,0,2,5,100,105,118,95,117,0,3,5,114,101,109,95,115,0,4,5,114,101,109,95,117,0,5,8,103,101,116,95,104,105,103,104,0,0,10,191,1,6,4,0,35,0,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,126,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,127,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,128,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,129,34,4,66,32,135,167,36,0,32,4,167,11,36,1,1,126,32,0,173,32,1,173,66,32,134,132,32,2,173,32,3,173,66,32,134,132,130,34,4,66,32,135,167,36,0,32,4,167,11])),{}).exports}catch(wl){}function Mi(e,t,n){this.low=0|e,this.high=0|t,this.unsigned=!!n}function Fi(e){return!0===(e&&e.__isLong__)}function ji(e){var t=Math.clz32(e&-e);return e?31-t:t}Object.defineProperty(Mi.prototype,"__isLong__",{value:!0}),Mi.isLong=Fi;var Di={},Li={};function qi(e,t){var n,r,o;return t?(o=0<=(e>>>=0)&&e<256)&&(r=Li[e])?r:(n=Ui(e,0,!0),o&&(Li[e]=n),n):(o=-128<=(e|=0)&&e<128)&&(r=Di[e])?r:(n=Ui(e,e<0?-1:0,!1),o&&(Di[e]=n),n)}function Bi(e,t){if(isNaN(e))return t?Ki:Yi;if(t){if(e<0)return Ki;if(e>=$i)return ts}else{if(e<=-Vi)return ns;if(e+1>=Vi)return es}return e<0?Bi(-e,t).neg():Ui(e%Wi|0,e/Wi|0,t)}function Ui(e,t,n){return new Mi(e,t,n)}Mi.fromInt=qi,Mi.fromNumber=Bi,Mi.fromBits=Ui;var zi=Math.pow;function Hi(e,t,n){if(0===e.length)throw Error("empty string");if("number"==typeof t?(n=t,t=!1):t=!!t,"NaN"===e||"Infinity"===e||"+Infinity"===e||"-Infinity"===e)return t?Ki:Yi;if((n=n||10)<2||36<n)throw RangeError("radix");var r;if((r=e.indexOf("-"))>0)throw Error("interior hyphen");if(0===r)return Hi(e.substring(1),t,n).neg();for(var o=Bi(zi(n,8)),a=Yi,i=0;i<e.length;i+=8){var s=Math.min(8,e.length-i),l=parseInt(e.substring(i,i+s),n);if(s<8){var c=Bi(zi(n,s));a=a.mul(c).add(Bi(l))}else a=(a=a.mul(o)).add(Bi(l))}return a.unsigned=t,a}function Gi(e,t){return"number"==typeof e?Bi(e,t):"string"==typeof e?Hi(e,t):Ui(e.low,e.high,"boolean"==typeof t?t:e.unsigned)}Mi.fromString=Hi,Mi.fromValue=Gi;var Wi=4294967296,$i=Wi*Wi,Vi=$i/2,Ji=qi(16777216),Yi=qi(0);Mi.ZERO=Yi;var Ki=qi(0,!0);Mi.UZERO=Ki;var Zi=qi(1);Mi.ONE=Zi;var Xi=qi(1,!0);Mi.UONE=Xi;var Qi=qi(-1);Mi.NEG_ONE=Qi;var es=Ui(-1,2147483647,!1);Mi.MAX_VALUE=es;var ts=Ui(-1,-1,!0);Mi.MAX_UNSIGNED_VALUE=ts;var ns=Ui(0,-2147483648,!1);Mi.MIN_VALUE=ns;var rs=Mi.prototype;rs.toInt=function(){return this.unsigned?this.low>>>0:this.low},rs.toNumber=function(){return this.unsigned?(this.high>>>0)*Wi+(this.low>>>0):this.high*Wi+(this.low>>>0)},rs.toString=function(e){if((e=e||10)<2||36<e)throw RangeError("radix");if(this.isZero())return"0";if(this.isNegative()){if(this.eq(ns)){var t=Bi(e),n=this.div(t),r=n.mul(t).sub(this);return n.toString(e)+r.toInt().toString(e)}return"-"+this.neg().toString(e)}for(var o=Bi(zi(e,6),this.unsigned),a=this,i="";;){var s=a.div(o),l=(a.sub(s.mul(o)).toInt()>>>0).toString(e);if((a=s).isZero())return l+i;for(;l.length<6;)l="0"+l;i=""+l+i}},rs.getHighBits=function(){return this.high},rs.getHighBitsUnsigned=function(){return this.high>>>0},rs.getLowBits=function(){return this.low},rs.getLowBitsUnsigned=function(){return this.low>>>0},rs.getNumBitsAbs=function(){if(this.isNegative())return this.eq(ns)?64:this.neg().getNumBitsAbs();for(var e=0!=this.high?this.high:this.low,t=31;t>0&&0==(e&1<<t);t--);return 0!=this.high?t+33:t+1},rs.isZero=function(){return 0===this.high&&0===this.low},rs.eqz=rs.isZero,rs.isNegative=function(){return!this.unsigned&&this.high<0},rs.isPositive=function(){return this.unsigned||this.high>=0},rs.isOdd=function(){return 1==(1&this.low)},rs.isEven=function(){return 0==(1&this.low)},rs.equals=function(e){return Fi(e)||(e=Gi(e)),(this.unsigned===e.unsigned||this.high>>>31!=1||e.high>>>31!=1)&&this.high===e.high&&this.low===e.low},rs.eq=rs.equals,rs.notEquals=function(e){return!this.eq(e)},rs.neq=rs.notEquals,rs.ne=rs.notEquals,rs.lessThan=function(e){return this.comp(e)<0},rs.lt=rs.lessThan,rs.lessThanOrEqual=function(e){return this.comp(e)<=0},rs.lte=rs.lessThanOrEqual,rs.le=rs.lessThanOrEqual,rs.greaterThan=function(e){return this.comp(e)>0},rs.gt=rs.greaterThan,rs.greaterThanOrEqual=function(e){return this.comp(e)>=0},rs.gte=rs.greaterThanOrEqual,rs.ge=rs.greaterThanOrEqual,rs.compare=function(e){if(Fi(e)||(e=Gi(e)),this.eq(e))return 0;var t=this.isNegative(),n=e.isNegative();return t&&!n?-1:!t&&n?1:this.unsigned?e.high>>>0>this.high>>>0||e.high===this.high&&e.low>>>0>this.low>>>0?-1:1:this.sub(e).isNegative()?-1:1},rs.comp=rs.compare,rs.negate=function(){return!this.unsigned&&this.eq(ns)?ns:this.not().add(Zi)},rs.neg=rs.negate,rs.add=function(e){Fi(e)||(e=Gi(e));var t=0,n=0,r=0,o=0;return r+=(o+=(65535&this.low)+(65535&e.low))>>>16,n+=(r+=(this.low>>>16)+(e.low>>>16))>>>16,t+=(n+=(65535&this.high)+(65535&e.high))>>>16,t+=(this.high>>>16)+(e.high>>>16),Ui((r&=65535)<<16|(o&=65535),(t&=65535)<<16|(n&=65535),this.unsigned)},rs.subtract=function(e){return Fi(e)||(e=Gi(e)),this.add(e.neg())},rs.sub=rs.subtract,rs.multiply=function(e){if(this.isZero())return this;if(Fi(e)||(e=Gi(e)),Pi)return Ui(Pi.mul(this.low,this.high,e.low,e.high),Pi.get_high(),this.unsigned);if(e.isZero())return this.unsigned?Ki:Yi;if(this.eq(ns))return e.isOdd()?ns:Yi;if(e.eq(ns))return this.isOdd()?ns:Yi;if(this.isNegative())return e.isNegative()?this.neg().mul(e.neg()):this.neg().mul(e).neg();if(e.isNegative())return this.mul(e.neg()).neg();if(this.lt(Ji)&&e.lt(Ji))return Bi(this.toNumber()*e.toNumber(),this.unsigned);var t=65535&this.high,n=this.low>>>16,r=65535&this.low,o=65535&e.high,a=e.low>>>16,i=65535&e.low,s=0,l=0,c=0,u=0;return c+=(u+=r*i)>>>16,l+=(c+=n*i)>>>16,c&=65535,l+=(c+=r*a)>>>16,s+=(l+=t*i)>>>16,l&=65535,s+=(l+=n*a)>>>16,l&=65535,s+=(l+=r*o)>>>16,s+=(this.high>>>16)*i+t*a+n*o+r*(e.high>>>16),Ui((c&=65535)<<16|(u&=65535),(s&=65535)<<16|(l&=65535),this.unsigned)},rs.mul=rs.multiply,rs.divide=function(e){if(Fi(e)||(e=Gi(e)),e.isZero())throw Error("division by zero");var t,n,r;if(Pi)return this.unsigned||-2147483648!==this.high||-1!==e.low||-1!==e.high?Ui((this.unsigned?Pi.div_u:Pi.div_s)(this.low,this.high,e.low,e.high),Pi.get_high(),this.unsigned):this;if(this.isZero())return this.unsigned?Ki:Yi;if(this.unsigned){if(e.unsigned||(e=e.toUnsigned()),e.gt(this))return Ki;if(e.gt(this.shru(1)))return Xi;r=Ki}else{if(this.eq(ns))return e.eq(Zi)||e.eq(Qi)?ns:e.eq(ns)?Zi:(t=this.shr(1).div(e).shl(1)).eq(Yi)?e.isNegative()?Zi:Qi:(n=this.sub(e.mul(t)),r=t.add(n.div(e)));if(e.eq(ns))return this.unsigned?Ki:Yi;if(this.isNegative())return e.isNegative()?this.neg().div(e.neg()):this.neg().div(e).neg();if(e.isNegative())return this.div(e.neg()).neg();r=Yi}for(n=this;n.gte(e);){t=Math.max(1,Math.floor(n.toNumber()/e.toNumber()));for(var o=Math.ceil(Math.log(t)/Math.LN2),a=o<=48?1:zi(2,o-48),i=Bi(t),s=i.mul(e);s.isNegative()||s.gt(n);)s=(i=Bi(t-=a,this.unsigned)).mul(e);i.isZero()&&(i=Zi),r=r.add(i),n=n.sub(s)}return r},rs.div=rs.divide,rs.modulo=function(e){return Fi(e)||(e=Gi(e)),Pi?Ui((this.unsigned?Pi.rem_u:Pi.rem_s)(this.low,this.high,e.low,e.high),Pi.get_high(),this.unsigned):this.sub(this.div(e).mul(e))},rs.mod=rs.modulo,rs.rem=rs.modulo,rs.not=function(){return Ui(~this.low,~this.high,this.unsigned)},rs.countLeadingZeros=function(){return this.high?Math.clz32(this.high):Math.clz32(this.low)+32},rs.clz=rs.countLeadingZeros,rs.countTrailingZeros=function(){return this.low?ji(this.low):ji(this.high)+32},rs.ctz=rs.countTrailingZeros,rs.and=function(e){return Fi(e)||(e=Gi(e)),Ui(this.low&e.low,this.high&e.high,this.unsigned)},rs.or=function(e){return Fi(e)||(e=Gi(e)),Ui(this.low|e.low,this.high|e.high,this.unsigned)},rs.xor=function(e){return Fi(e)||(e=Gi(e)),Ui(this.low^e.low,this.high^e.high,this.unsigned)},rs.shiftLeft=function(e){return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ui(this.low<<e,this.high<<e|this.low>>>32-e,this.unsigned):Ui(0,this.low<<e-32,this.unsigned)},rs.shl=rs.shiftLeft,rs.shiftRight=function(e){return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ui(this.low>>>e|this.high<<32-e,this.high>>e,this.unsigned):Ui(this.high>>e-32,this.high>=0?0:-1,this.unsigned)},rs.shr=rs.shiftRight,rs.shiftRightUnsigned=function(e){return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:e<32?Ui(this.low>>>e|this.high<<32-e,this.high>>>e,this.unsigned):Ui(32===e?this.high:this.high>>>e-32,0,this.unsigned)},rs.shru=rs.shiftRightUnsigned,rs.shr_u=rs.shiftRightUnsigned,rs.rotateLeft=function(e){var t;return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ui(this.high,this.low,this.unsigned):e<32?Ui(this.low<<e|this.high>>>(t=32-e),this.high<<e|this.low>>>t,this.unsigned):Ui(this.high<<(e-=32)|this.low>>>(t=32-e),this.low<<e|this.high>>>t,this.unsigned)},rs.rotl=rs.rotateLeft,rs.rotateRight=function(e){var t;return Fi(e)&&(e=e.toInt()),0==(e&=63)?this:32===e?Ui(this.high,this.low,this.unsigned):e<32?Ui(this.high<<(t=32-e)|this.low>>>e,this.low<<t|this.high>>>e,this.unsigned):Ui(this.low<<(t=32-(e-=32))|this.high>>>e,this.high<<t|this.low>>>e,this.unsigned)},rs.rotr=rs.rotateRight,rs.toSigned=function(){return this.unsigned?Ui(this.low,this.high,!1):this},rs.toUnsigned=function(){return this.unsigned?this:Ui(this.low,this.high,!0)},rs.toBytes=function(e){return e?this.toBytesLE():this.toBytesBE()},rs.toBytesLE=function(){var e=this.high,t=this.low;return[255&t,t>>>8&255,t>>>16&255,t>>>24,255&e,e>>>8&255,e>>>16&255,e>>>24]},rs.toBytesBE=function(){var e=this.high,t=this.low;return[e>>>24,e>>>16&255,e>>>8&255,255&e,t>>>24,t>>>16&255,t>>>8&255,255&t]},Mi.fromBytes=function(e,t,n){return n?Mi.fromBytesLE(e,t):Mi.fromBytesBE(e,t)},Mi.fromBytesLE=function(e,t){return new Mi(e[0]|e[1]<<8|e[2]<<16|e[3]<<24,e[4]|e[5]<<8|e[6]<<16|e[7]<<24,t)},Mi.fromBytesBE=function(e,t){return new Mi(e[4]<<24|e[5]<<16|e[6]<<8|e[7],e[0]<<24|e[1]<<16|e[2]<<8|e[3],t)};var os=function(){function e(t){var n=t.filehandle,r=t.path;if(X(this,e),n)this.filehandle=n;else{if(!r)throw new TypeError("either filehandle or path must be defined");this.filehandle=new Lr(r)}}var t,n,r;return ee(e,[{key:"_readLongWithOverflow",value:function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:0,n=!(arguments.length>2&&void 0!==arguments[2])||arguments[2],r=Mi.fromBytesLE(e.slice(t,t+8),n);if(r.greaterThan(Number.MAX_SAFE_INTEGER)||r.lessThan(Number.MIN_SAFE_INTEGER))throw new TypeError("integer overflow");return r.toNumber()}},{key:"_getIndex",value:function(){return this.index||(this.index=this._readIndex()),this.index}},{key:"_readIndex",value:(r=Z(J().mark((function e(){var t,n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return t=Kt.allocUnsafe(8),e.next=3,this.filehandle.read(t,0,8,0);case 3:if(n=this._readLongWithOverflow(t,0,!0)){e.next=6;break}return e.abrupt("return",[[0,0]]);case 6:if((r=new Array(n+1))[0]=[0,0],!((o=16*n)>Number.MAX_SAFE_INTEGER)){e.next=11;break}throw new TypeError("integer overflow");case 11:return t=Kt.allocUnsafe(o),e.next=14,this.filehandle.read(t,0,o,8);case 14:for(a=0;a<n;a+=1)i=this._readLongWithOverflow(t,16*a),s=this._readLongWithOverflow(t,16*a+8),r[a+1]=[i,s];return e.abrupt("return",r);case 16:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"getLastBlock",value:(n=Z(J().mark((function e(){var t;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this._getIndex();case 2:if((t=e.sent).length){e.next=5;break}return e.abrupt("return",void 0);case 5:return e.abrupt("return",t[t.length-1]);case 6:case"end":return e.stop()}}),e,this)}))),function(){return n.apply(this,arguments)})},{key:"getRelevantBlocksForRead",value:(t=Z(J().mark((function e(t,n){var r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=n+t,0!==t){e.next=3;break}return e.abrupt("return",[]);case 3:return e.next=5,this._getIndex();case 5:for(a=[],i=function(e,t){var r=e[1];return r<=n&&(t?t[1]:Infinity)>n?0:r<n?-1:1},s=0,l=(o=e.sent).length-1,c=Math.floor(o.length/2),u=i(o[c],o[c+1]);0!==u;)u>0?l=c-1:u<0&&(s=c+1),c=Math.ceil((l-s)/2)+s,u=i(o[c],o[c+1]);a.push(o[c]),f=c+1;case 15:if(!(f<o.length)){e.next=22;break}if(a.push(o[f]),!(o[f][1]>=r)){e.next=19;break}return e.abrupt("break",22);case 19:f+=1,e.next=15;break;case 22:return a[a.length-1][1]<r&&a.push([]),e.abrupt("return",a);case 24:case"end":return e.stop()}}),e,this)}))),function(e,n){return t.apply(this,arguments)})}]),e}(),as=function(){function e(t){var n=t.filehandle,r=t.path,o=t.gziFilehandle,a=t.gziPath;if(X(this,e),n)this.filehandle=n;else{if(!r)throw new TypeError("either filehandle or path must be defined");this.filehandle=new Lr(r)}if(!o&&!a&&!r)throw new TypeError("either gziFilehandle or gziPath must be defined");this.gzi=new os({filehandle:o,path:o||a||!r?"".concat(r,".gzi"):a})}var t,n,r,o;return ee(e,[{key:"stat",value:(o=Z(J().mark((function e(){var t;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.filehandle.stat();case 2:return t=e.sent,e.t0=Object,e.t1=t,e.next=7,this.getUncompressedFileSize();case 7:return e.t2=e.sent,e.t3=void 0,e.t4=void 0,e.t5={size:e.t2,blocks:e.t3,blksize:e.t4},e.abrupt("return",e.t0.assign.call(e.t0,e.t1,e.t5));case 12:case"end":return e.stop()}}),e,this)}))),function(){return o.apply(this,arguments)})},{key:"getUncompressedFileSize",value:(r=Z(J().mark((function e(){var t,n,r,o,a;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getLastBlock();case 2:return t=fe(e.sent,2),n=t[1],e.next=7,this.filehandle.stat();case 7:return r=e.sent.size,o=Kt.allocUnsafe(4),e.next=12,this.filehandle.read(o,0,4,r-28-4);case 12:if(4===e.sent.bytesRead){e.next=16;break}throw new Error("read error");case 16:return a=o.readUInt32LE(0),e.abrupt("return",n+a);case 18:case"end":return e.stop()}}),e,this)}))),function(){return r.apply(this,arguments)})},{key:"_readAndUncompressBlock",value:(n=Z(J().mark((function e(t,n,r){var o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(o=fe(n,1)[0],a=fe(r,1)[0]){e.next=7;break}return e.next=6,this.filehandle.stat();case 6:a=e.sent.size;case 7:return i=a-o,e.next=10,this.filehandle.read(t,0,i,o);case 10:return e.next=12,Ti(t.slice(0,i));case 12:return e.abrupt("return",e.sent);case 14:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"read",value:(t=Z(J().mark((function e(t,n,r,o){var a,i,s,l,c,u,f,d,p,h;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.gzi.getRelevantBlocksForRead(r,o);case 2:a=e.sent,i=Kt.allocUnsafe(65536),s=n,l=0,c=0;case 7:if(!(c<a.length-1)){e.next=18;break}return e.next=10,this._readAndUncompressBlock(i,a[c],a[c+1]);case 10:u=e.sent,f=fe(a[c],2),p=(d=f[1])>=o?0:o-d,h=Math.min(o+r,d+u.length)-d,p>=0&&p<u.length&&(u.copy(t,s,p,h),s+=h-p,l+=h-p);case 15:c+=1,e.next=7;break;case 18:return e.abrupt("return",{bytesRead:l,buffer:t});case 19:case"end":return e.stop()}}),e,this)}))),function(e,n,r,o){return t.apply(this,arguments)})}]),e}();function is(e,t){return e.offset+e.lineBytes*Math.floor(t/e.lineLength)+t%e.lineLength}function ss(e,t){return ls.apply(this,arguments)}function ls(){return ls=Z(J().mark((function e(t,n){var r,o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,t.readFile(n);case 2:if((r=e.sent)&&r.length){e.next=5;break}throw new Error("No data read from FASTA index (FAI) file");case 5:return o=0,i=r.toString("utf8").split(/\r?\n/).filter((function(e){return/\S/.test(e)})).map((function(e){return e.split("\t")})).filter((function(e){return""!==e[0]})).map((function(e){return a&&a.name===e[0]||(a={name:e[0],id:o},o+=1),{id:a.id,name:e[0],length:+e[1],start:0,end:+e[1],offset:+e[2],lineLength:+e[3],lineBytes:+e[4]}})),e.abrupt("return",{name:Object.fromEntries(i.map((function(e){return[e.name,e]}))),id:Object.fromEntries(i.map((function(e){return[e.id,e]})))});case 8:case"end":return e.stop()}}),e)}))),ls.apply(this,arguments)}var cs=function(){function e(t){var 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r,o=e.fasta,a=e.path,i=e.fai,s=e.faiPath,l=e.gzi,c=e.gziPath;return X(this,n),r=t.call(this,{fasta:o,path:a,fai:i,faiPath:s}),o&&l?r.fasta=new as({filehandle:o,gziFilehandle:l}):a&&c&&(r.fasta=new as({path:a,gziPath:c})),r}return ee(n)}(cs);function fs(e){return e.split(">").filter((function(e){return/\S/.test(e)})).map((function(e){var t=de(e.split("\n")),n=t[0],r=t.slice(1),o=de(n.split(" ")),a=o[0],i=o.slice(1),s=r.join("").replace(/\s/g,"");return{id:a,description:i.join(" "),sequence:s}}))}var ds=function(){function e(t){var n=t.fasta,r=t.path;if(X(this,e),n)this.fasta=n;else{if(!r)throw new Error("Need to pass fasta or path");this.fasta=new Lr(r)}this.data=this.fasta.readFile().then((function(e){return fs(e.toString("utf8"))}))}var t,n;return ee(e,[{key:"fetch",value:(n=Z(J().mark((function e(t,n,r){var o,a;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:if(o=e.sent.find((function(e){return e.id===t})),a=r-n,o){e.next=7;break}throw new Error("no sequence with id ".concat(t," exists"));case 7:return e.abrupt("return",o.sequence.substr(n,a));case 8:case"end":return e.stop()}}),e,this)}))),function(e,t,r){return n.apply(this,arguments)})},{key:"getSequenceNames",value:(t=Z(J().mark((function e(){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return e.next=2,this.data;case 2:return e.abrupt("return",e.sent.map((function(e){return e.id})));case 4:case"end":return e.stop()}}),e,this)}))),function(){return t.apply(this,arguments)})}]),e}(),ps=L({__proto__:null,parseSmallFasta:fs,FetchableSmallFasta:ds,IndexedFasta:cs,BgzipIndexedFasta:us}),hs=L(Gr);Object.defineProperty(Dr,"__esModule",{value:!0}),Dr.AddAssemblyFromExternalChange=void 0;var ms=ps,gs=hs,ys=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","AddAssemblyFromExternalChange"),te(le(n),"changes",void 0),n.changes="changes"in 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To use it, please refresh the page.')}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.typeName;if(1===t.length){var r=fe(t,1)[0];return{typeName:n,assembly:e,assemblyName:r.assemblyName,fileIds:r.fileIds}}return{typeName:n,assembly:e,changes:t}}},{key:"executeOnServer",value:(a=Z(J().mark((function e(t){var n,r,o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=be(this.changes),e.prev=2,n.s();case 4:if((r=n.n()).done){e.next=11;break}return a=(o=r.value).assemblyName,i=o.fileIds,e.next=9,"gzi"in i?this.executeOnServerIndexed(t,a,i):this.executeOnServerFasta(t,a,i.fa);case 9:e.next=4;break;case 11:e.next=16;break;case 13:e.prev=13,e.t0=e.catch(2),n.e(e.t0);case 16:return e.prev=16,n.f(),e.finish(16);case 19:case"end":return e.stop()}}),e,this,[[2,13,16,19]])}))),function(e){return a.apply(this,arguments)})},{key:"executeOnServerIndexed",value:(o=Z(J().mark((function e(t,n,r){var o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k,A,C,O,N,R,T,I;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(s=(i=Dt.env.CHUNK_SIZE)&&Number(i),Dt.env.FILE_UPLOAD_FOLDER){e.next=5;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 5:return l=r.fa,c=r.fai,u=r.gzi,f=t.assemblyModel,d=t.checkModel,p=t.fileModel,h=t.filesService,m=t.refSeqModel,g=t.user,e.next=9,p.findById(l);case 9:if(null==(y=e.sent)?void 0:y.checksum){e.next=13;break}throw new Error("No checksum for file document ".concat(null==y?void 0:y.id));case 13:return e.next=15,p.findById(c);case 15:if(null==(v=e.sent)?void 0:v.checksum){e.next=19;break}throw new Error("No checksum for file document ".concat(null==v?void 0:v.id));case 19:return e.next=21,p.findById(u);case 21:if(null==(b=e.sent)?void 0:b.checksum){e.next=25;break}throw new Error("No checksum for file document ".concat(null==b?void 0:b.id));case 25:return _=h.getFileHandle(y),w=h.getFileHandle(v),S=h.getFileHandle(b),x=new bs.BgzipIndexedFasta({fasta:_,fai:w,gzi:S}),e.next=31,x.getSequenceSizes();case 31:return E=e.sent,e.next=34,Promise.all([_.close(),w.close(),S.close()]);case 34:return e.next=36,f.findOne({name:n}).exec();case 36:if(!e.sent){e.next=39;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 39:return e.next=41,d.find({default:!0}).exec();case 41:return k=e.sent.map((function(e){return e._id.toHexString()})),e.next=45,f.create([{_id:this.assembly,name:n,user:g,status:-1,fileIds:r,checks:k}]);case 45:A=fe(e.sent,1),C=A[0],null===(o=(a=this.logger).debug)||void 0===o||o.call(a,'Added new assembly "'.concat(n,'", docId "').concat(C._id,'"')),e.t0=J().keys(E);case 50:if((e.t1=e.t0()).done){e.next=60;break}return O=e.t1.value,e.next=54,m.create([V(V({name:O,assembly:C._id,length:E[O]},s?{chunkSize:s}:null),{},{user:g,status:-1})]);case 54:T=fe(e.sent,1),I=T[0],null===(N=(R=this.logger).debug)||void 0===N||N.call(R,'Added new refSeq "'.concat(O,'", docId "').concat(I._id,'"')),e.next=50;break;case 60:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return o.apply(this,arguments)})},{key:"executeOnServerFasta",value:(r=Z(J().mark((function e(t,n,r){var o,a,i,s,l,c,u,f,d,p,h,m,g,y;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return u=t.assemblyModel,f=t.checkModel,d=t.fileModel,p=t.user,e.next=3,d.findById(r).exec();case 3:if(h=e.sent){e.next=6;break}throw new Error('File "'.concat(r,'" not found in Mongo'));case 6:return null===(o=(a=this.logger).debug)||void 0===o||o.call(a,'FileId "'.concat(r,'", checksum "').concat(h.checksum,'"')),e.next=9,u.findOne({name:n}).exec();case 9:if(!e.sent){e.next=12;break}throw new Error('Assembly "'.concat(n,'" already exists'));case 12:return e.next=14,f.find({default:!0}).exec();case 14:return m=e.sent.map((function(e){return e._id.toHexString()})),e.next=18,u.create([{_id:this.assembly,name:n,user:p,status:-1,fileIds:{fa:r},checks:m}]);case 18:return g=fe(e.sent,1),y=g[0],null===(i=(s=this.logger).debug)||void 0===i||i.call(s,'Added new assembly "'.concat(n,'", docId "').concat(y._id,'"')),null===(l=(c=this.logger).debug)||void 0===l||l.call(c,'File type: "'.concat(h.type,'", assemblyId: "').concat(y._id,'"')),e.next=25,this.addRefSeqIntoDb(h,y._id.toString(),t);case 25:case"end":return e.stop()}}),e,this)}))),function(e,t,n){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new s({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),s}(rr.FromFileBaseChange);vs.AddAssemblyFromFileChange=_s;var ws={},Ss={};Object.defineProperty(Ss,"__esModule",{value:!0}),Ss.DeleteFeatureChange=void 0,Ss.isDeleteFeatureChange=function(e){return"DeleteFeatureChange"===e.typeName};var xs=ws,Es=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","DeleteFeatureChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,deletedFeature:o.deletedFeature,parentFeatureId:o.parentFeatureId}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l=this;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,o=this.logger,a=be(this.changes),e.prev=3,s=J().mark((function e(){var t,a,s,c,u,f,d,p,h;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return s=(a=i.value).deletedFeature,c=a.parentFeatureId,e.next=4,n.findOne({allIds:s._id}).session(r).exec();case 4:if(u=e.sent){e.next=9;break}throw f="*** ERROR: The following featureId was not found in database ='".concat(s._id,"'"),o.error(f),new Error(f);case 9:if(!u._id.equals(s._id)){e.next=16;break}if(!c){e.next=12;break}throw new Error('Feature "'.concat(s._id,'" is top-level, but received a parent feature ID'));case 12:return e.next=14,n.findByIdAndDelete(u._id);case 14:return null===(d=o.debug)||void 0===d||d.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(u._id,'". Whole document deleted.')),e.abrupt("return",1);case 16:return(p=l.findAndDeleteChildFeature(u,s._id)).push(s._id),u.allIds=u.allIds.filter((function(e){return!p.includes(e)})),u.markModified("children"),e.prev=20,e.next=23,u.save();case 23:e.next=29;break;case 25:throw e.prev=25,e.t0=e.catch(20),null===(h=o.debug)||void 0===h||h.call(o,"*** FAILED: ".concat(e.t0)),e.t0;case 29:null===(t=o.debug)||void 0===t||t.call(o,'Feature "'.concat(s._id,'" deleted from document "').concat(u._id,'"'));case 30:case"end":return e.stop()}}),e,null,[[20,25]])})),a.s();case 6:if((i=a.n()).done){e.next=12;break}return e.delegateYield(s(),"t0",8);case 8:if(!e.t0){e.next=10;break}return e.abrupt("continue",10);case 10:e.next=6;break;case 12:e.next=17;break;case 14:e.prev=14,e.t1=e.catch(3),a.e(e.t1);case 17:return e.prev=17,a.f(),e.finish(17);case 20:case"end":return e.stop()}}),e,this,[[3,14,17,20]])}))),function(e){return r.apply(this,arguments)})},{key:"findAndDeleteChildFeature",value:function(e,t){if(!e.children)throw new Error("Feature ".concat(e._id," has no children"));var n=e._id,r=e.children,o=r.get(t);if(o){var a=this.getChildFeatureIds(o);return r.delete(t),a}var i,s=be(r);try{for(s.s();!(i=s.n()).done;){var l=fe(i.value,2)[1];try{return this.findAndDeleteChildFeature(l,t)}catch(e){}}}catch(e){s.e(e)}finally{s.f()}throw new Error('Feature "'.concat(t,'" not found in ').concat(n))}},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=be(this.changes),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=18;break}if(a=(o=r.value).deletedFeature,!(i=o.parentFeatureId)){e.next=15;break}if(s=t.getFeature(i)){e.next=12;break}throw new Error('Could not find parent feature "'.concat(i,'"'));case 12:s.deleteChild(a._id),e.next=16;break;case 15:t.getFeature(a._id)&&t.deleteFeature(a._id);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),n.e(e.t0);case 23:return e.prev=23,n.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e,t=this.assembly,n=this.changes,r=this.logger,o=pe(this.changedIds).reverse(),a=pe(n).reverse().map((function(e){return{addedFeature:e.deletedFeature,parentFeatureId:e.parentFeatureId}}));return null===(e=r.debug)||void 0===e||e.call(r,"INVERSE CHANGE '".concat(JSON.stringify(a),"'")),new xs.AddFeatureChange({changedIds:o,typeName:"AddFeatureChange",changes:a,assembly:t},{logger:r})}}]),a}(or.FeatureChange);Ss.DeleteFeatureChange=Es,Object.defineProperty(ws,"__esModule",{value:!0}),ws.AddFeatureChange=void 0,ws.isAddFeatureChange=function(e){return"AddFeatureChange"===e.typeName};var ks=Ss,As=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","AddFeatureChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,addedFeature:o.addedFeature,parentFeatureId:o.parentFeatureId,copyFeature:o.copyFeature,allIds:o.allIds}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k,A,C,O,N,R,T,I,P,M,F,j,D;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return o=t.assemblyModel,a=t.featureModel,i=t.refSeqModel,s=t.session,l=t.user,c=this.assembly,u=this.changes,f=this.logger,e.next=4,o.findById(c).session(s).exec();case 4:if(e.sent){e.next=9;break}throw d='*** ERROR: Assembly with id "'.concat(c,'" not found'),f.error(d),new Error(d);case 9:p=0,null===(n=f.debug)||void 0===n||n.call(f,"changes: ".concat(JSON.stringify(u))),h=be(u),e.prev=12,h.s();case 14:if((m=h.n()).done){e.next=64;break}return y=m.value,null===(g=f.debug)||void 0===g||g.call(f,"change: ".concat(JSON.stringify(y))),b=y.allIds,_=y.copyFeature,w=y.parentFeatureId,S=(v=y.addedFeature)._id,x=v.refSeq,e.next=21,i.findById(x).session(s).exec();case 21:if(e.sent){e.next=24;break}throw new Error('RefSeq was not found by assembly "'.concat(c,'" and seq_id "').concat(x,'" not found'));case 24:if(!_){e.next=34;break}return e.next=27,a.create([V(V({},v),{},{allIds:b,status:-1,user:l})],{session:s});case 27:k=fe(e.sent,1),A=k[0],null===(E=f.debug)||void 0===E||E.call(f,'Copied feature, docId "'.concat(A._id,'" to assembly "').concat(c,'"')),p++,e.next=61;break;case 34:if(!w){e.next=53;break}return e.next=37,a.findOne({allIds:w}).session(s).exec();case 37:if(N=e.sent){e.next=40;break}throw new Error('Could not find feature with ID "'.concat(w,'"'));case 40:if(R=this.getFeatureFromId(N,w)){e.next=43;break}throw new Error('Could not find feature with ID "'.concat(w,'" in feature "').concat(N._id,'"'));case 43:return R.children||(R.children=new Map),null!==(C=R.attributes)&&void 0!==C&&C._id||((T=R.attributes)||(T={}),T=V({_id:[R._id.toString()]},JSON.parse(JSON.stringify(T))),R.attributes=T),R.children.set(S,V(V({allIds:[]},v),{},{_id:S})),R.children=new Map(pe(R.children.entries()).sort((function(e,t){return e[1].min-t[1].min}))),I=this.getChildFeatureIds(v),(O=N.allIds).push.apply(O,[S].concat(pe(I))),e.next=51,N.save();case 51:e.next=61;break;case 53:return M=this.getChildFeatureIds(v),F=[S].concat(pe(M)),e.next=57,a.create([V({allIds:F,status:0},v)],{session:s});case 57:j=fe(e.sent,1),D=j[0],null===(P=f.verbose)||void 0===P||P.call(f,'Added docId "'.concat(D._id,'"'));case 61:p++;case 62:e.next=14;break;case 64:e.next=69;break;case 66:e.prev=66,e.t0=e.catch(12),h.e(e.t0);case 69:return e.prev=69,h.f(),e.finish(69);case 72:null===(r=f.debug)||void 0===r||r.call(f,"Added ".concat(p," new feature(s) into database."));case 73:case"end":return e.stop()}}),e,this,[[12,66,69,72]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s,l;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=this.assembly,r=be(this.changes),e.prev=4,r.s();case 6:if((o=r.n()).done){e.next=20;break}if(i=(a=o.value).addedFeature,!(s=a.parentFeatureId)){e.next=17;break}if(l=t.getFeature(s)){e.next=13;break}throw new Error('Could not find parent feature "'.concat(s,'"'));case 13:l.attributes.get("_id")||l.setAttribute("_id",[l._id]),l.addChild(i),e.next=18;break;case 17:t.addFeature(n,i);case 18:e.next=6;break;case 20:e.next=25;break;case 22:e.prev=22,e.t0=e.catch(4),r.e(e.t0);case 25:return e.prev=25,r.f(),e.finish(25);case 28:case"end":return e.stop()}}),e,this,[[4,22,25,28]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=pe(this.changedIds).reverse(),o=pe(t).reverse().map((function(e){return{deletedFeature:e.addedFeature,parentFeatureId:e.parentFeatureId}}));return new ks.DeleteFeatureChange({changedIds:r,typeName:"DeleteFeatureChange",changes:o,assembly:e},{logger:n})}}]),a}(or.FeatureChange);ws.AddFeatureChange=As;var Cs={};Object.defineProperty(Cs,"__esModule",{value:!0}),Cs.AddFeaturesFromFileChange=void 0;var Os=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n,r;return X(this,a),te(le(r=o.call(this,e,t)),"typeName","AddFeaturesFromFileChange"),te(le(r),"changes",void 0),te(le(r),"deleteExistingFeatures",!1),r.deleteExistingFeatures=null!==(n=e.deleteExistingFeatures)&&void 0!==n&&n,r.changes="changes"in e?e.changes:[e],r}return ee(a,[{key:"notification",get:function(){return"Features have been added. To see them, please refresh the page."}},{key:"toJSON",value:function(){var e=this.assembly,t=this.changes,n=this.deleteExistingFeatures,r=this.typeName;return 1===t.length?{typeName:r,assembly:e,fileId:fe(t,1)[0].fileId,deleteExistingFeatures:n}:{typeName:r,assembly:e,changes:t,deleteExistingFeatures:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(r=t.fileModel,o=t.filesService,a=this.changes,i=this.logger,!this.deleteExistingFeatures){e.next=5;break}return e.next=5,this.removeExistingFeatures(t);case 5:s=be(a),e.prev=6,s.s();case 8:if((l=s.n()).done){e.next=56;break}if(u=l.value.fileId,Dt.env.FILE_UPLOAD_FOLDER){e.next=14;break}throw new Error("No FILE_UPLOAD_FOLDER found in .env file");case 14:return e.next=16,r.findById(u).exec();case 16:if(f=e.sent){e.next=19;break}throw new Error('File "'.concat(u,'" not found in Mongo'));case 19:null===(c=i.debug)||void 0===c||c.call(i,'FileId "'.concat(u,'", checksum "').concat(f.checksum,'"')),d=o.parseGFF3(o.getFileStream(f)),p=0,h=!1,m=!1,e.prev=24,y=H(d);case 26:return e.next=28,y.next();case 28:if(!(h=!(v=e.sent).done)){e.next=38;break}return b=v.value,e.next=33,this.addFeatureIntoDb(b,t);case 33:++p%1e3==0&&(null===(_=i.debug)||void 0===_||_.call(i,"Processed ".concat(p," features")));case 35:h=!1,e.next=26;break;case 38:e.next=44;break;case 40:e.prev=40,e.t0=e.catch(24),m=!0,g=e.t0;case 44:if(e.prev=44,e.prev=45,!h||null==y.return){e.next=49;break}return e.next=49,y.return();case 49:if(e.prev=49,!m){e.next=52;break}throw g;case 52:return e.finish(49);case 53:return e.finish(44);case 54:e.next=8;break;case 56:e.next=61;break;case 58:e.prev=58,e.t1=e.catch(6),s.e(e.t1);case 61:return e.prev=61,s.f(),e.finish(61);case 64:null===(n=i.debug)||void 0===n||n.call(i,"New features added into database!");case 65:case"end":return e.stop()}}),e,this,[[6,58,61,64],[24,40,44,54],[45,,49,53]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:this.typeName,changes:this.changes,assembly:this.assembly},{logger:this.logger})}}]),a}(rr.FromFileBaseChange);Cs.AddFeaturesFromFileChange=Os;var Ns={};Object.defineProperty(Ns,"__esModule",{value:!0}),Ns.AddRefSeqAliasesChange=void 0;var Rs=C.default,Ts=function(e){ne(r,e);var t,n=ce(r);function r(e,t){var o;return X(this,r),te(le(o=n.call(this,e,t)),"typeName","AddRefSeqAliasesChange"),te(le(o),"refSeqAliases",void 0),o.refSeqAliases=e.refSeqAliases,o}return ee(r,[{key:"executeOnClient",value:function(e){var t=(0,Rs.getSession)(e).assemblyManager.get(this.assembly);if(!t)throw new Error("assembly ".concat(this.assembly," not found"));var n=t.refNameAliases,r=t.lowerCaseRefNameAliases;if(!n||!r)throw new Error("Session refNameAliases not found in assembly");var o,a=be(this.refSeqAliases);try{for(a.s();!(o=a.n()).done;){var i,s=o.value,l=s.refName,c=be(s.aliases);try{for(c.s();!(i=c.n()).done;){var u=i.value;n[u]=l,r[u.toLowerCase()]=l}}catch(e){c.e(e)}finally{c.f()}}}catch(e){a.e(e)}finally{a.f()}return t.setRefNameAliases(n,r),Promise.resolve()}},{key:"getInverse",value:function(){throw new Error("Method not implemented.")}},{key:"toJSON",value:function(){return{assembly:this.assembly,typeName:this.typeName,refSeqAliases:this.refSeqAliases}}},{key:"executeOnServer",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.refSeqModel,r=t.session,o=this.assembly,a=this.logger,i=be(this.refSeqAliases),e.prev=3,i.s();case 5:if((s=i.n()).done){e.next=13;break}return c=s.value,null===(l=a.debug)||void 0===l||l.call(a,"Updating Refname alias for assembly: ".concat(o,", refSeqAlias: ").concat(JSON.stringify(c))),u=c.aliases,f=c.refName,e.next=11,n.updateOne({assembly:o,name:f},{$set:{aliases:u}}).session(r);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),i.e(e.t0);case 18:return e.prev=18,i.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:function(e){throw new Error("Method not implemented.")}},{key:"notification",get:function(){return"RefSeq aliases have been added."}}]),r}(or.AssemblySpecificChange);Ns.AddRefSeqAliasesChange=Ts;var Is={};Object.defineProperty(Is,"__esModule",{value:!0}),Is.DeleteAssemblyChange=void 0;var Ps=C.default,Ms=function(e){ne(a,e);var t,n,r,o=ce(a);function a(){var e;X(this,a);for(var t=arguments.length,n=new Array(t),r=0;r<t;r++)n[r]=arguments[r];return te(le(e=o.call.apply(o,[this].concat(n))),"typeName","DeleteAssemblyChange"),e}return ee(a,[{key:"notification",get:function(){return'Assembly "'.concat(this.assembly,'" deleted successfully.')}},{key:"toJSON",value:function(){return{typeName:this.typeName,assembly:this.assembly}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return r=t.assemblyModel,o=t.featureModel,a=t.refSeqChunkModel,i=t.refSeqModel,s=t.session,l=this.assembly,c=this.logger,e.next=4,r.findById(l).session(s).exec();case 4:if(e.sent){e.next=9;break}throw u='*** ERROR: Assembly with id "'.concat(l,'" not found'),c.error(u),new Error(u);case 9:return e.next=11,i.find({assembly:l}).exec();case 11:return f=e.sent.map((function(e){return e._id})),e.next=15,a.deleteMany({refSeq:f}).exec();case 15:return e.next=17,o.deleteMany({refSeq:f}).exec();case 17:return e.next=19,i.deleteMany({assembly:l}).exec();case 19:return e.next=21,r.findByIdAndDelete(l).exec();case 21:null===(n=c.debug)||void 0===n||n.call(c,'Assembly "'.concat(l,'" deleted from database.'));case 22:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(o=this.assembly,t){e.next=3;break}throw new Error("No data store");case 3:return a=(0,Ps.getSession)(t),t.assemblies.has(o)&&t.deleteAssembly(o),e.next=7,null===(n=a.removeAssembly)||void 0===n?void 0:n.call(a,o);case 7:return e.next=9,null===(r=a.removeSessionAssembly)||void 0===r?void 0:r.call(a,o);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:"DeleteAssemblyChange",assembly:this.assembly},{logger:this.logger})}}]),a}(or.AssemblySpecificChange);Is.DeleteAssemblyChange=Ms;var Fs={};Object.defineProperty(Fs,"__esModule",{value:!0}),Fs.DeleteUserChange=void 0;var js=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","DeleteUserChange"),te(le(n),"changes",void 0),te(le(n),"userId",void 0),n.changes="changes"in e?e.changes:[e],n.userId=e.userId,n}return ee(a,[{key:"toJSON",value:function(){return{typeName:this.typeName,userId:this.userId}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:return n=t.session,r=t.userModel,o=this.logger,a=this.userId,e.next=4,r.findOneAndDelete({_id:a}).session(n).exec();case 4:if(e.sent){e.next=9;break}throw i='*** ERROR: User with id "'.concat(a,'" not found'),o.error(i),new Error(i);case 9:case"end":return e.stop()}}),e,this)}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:this.typeName,userId:this.userId},{logger:this.logger})}}]),a}(or.Change);Fs.DeleteUserChange=js;var Ds={};Object.defineProperty(Ds,"__esModule",{value:!0}),Ds.FeatureAttributeChange=void 0,Ds.isFeatureAttributeChange=function(e){return"FeatureAttributeChange"===e.typeName};var Ls=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","FeatureAttributeChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,attributes:o.attributes}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,i=[],s=be(o=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=26;break}return f=l.value.featureId,e.next=11,n.findOne({allIds:f}).session(r).exec();case 11:if(d=e.sent){e.next=16;break}throw p="*** ERROR: The following featureId was not found in database ='".concat(f,"'"),a.error(p),new Error(p);case 16:if(null===(c=a.debug)||void 0===c||c.call(a,"*** Feature found: ".concat(JSON.stringify(d))),h=this.getFeatureFromId(d,f)){e.next=22;break}throw a.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:null===(u=a.debug)||void 0===u||u.call(a,"*** Found feature: ".concat(JSON.stringify(h))),i.push({feature:h,topLevelFeature:d});case 24:e.next=6;break;case 26:e.next=31;break;case 28:e.prev=28,e.t0=e.catch(4),s.e(e.t0);case 31:return e.prev=31,s.f(),e.finish(31);case 34:m=be(o.entries()),e.prev=35,m.s();case 37:if((g=m.n()).done){e.next=55;break}return 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a({changedIds:pe(this.changedIds).reverse(),typeName:"FeatureAttributeChange",changes:pe(t).reverse().map((function(e){return{featureId:e.featureId,attributes:e.attributes}})),assembly:e},{logger:n})}}]),a}(or.FeatureChange);Ds.FeatureAttributeChange=Ls;var qs={},Bs=["__v","_id","assemblies","internetAccounts","plugins","tracks"];function Us(e){var t=e.assemblies,n=e.internetAccounts,r=e.plugins,o=e.tracks,a=function(e,t){if(null==e)return{};var n,r,o=function(e,t){if(null==e)return{};var n,r,o={},a=Object.keys(e);for(r=0;r<a.length;r++)t.indexOf(n=a[r])>=0||(o[n]=e[n]);return o}(e,t);if(Object.getOwnPropertySymbols){var a=Object.getOwnPropertySymbols(e);for(r=0;r<a.length;r++)t.indexOf(n=a[r])>=0||Object.prototype.propertyIsEnumerable.call(e,n)&&(o[n]=e[n])}return o}(e,Bs),i=null==t?void 0:t.filter((function(e){return"ApolloSequenceAdapter"!==e.sequence.adapter.type})),s=null==o?void 0:o.filter((function(e){return"ApolloTrack"!==e.type})),l=null==r?void 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a({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:this.newJBrowseConfig,newJBrowseConfig:this.oldJBrowseConfig},{logger:this.logger})}}]),a}(or.Change);qs.ImportJBrowseConfigChange=zs;var Hs={};Object.defineProperty(Hs,"__esModule",{value:!0}),Hs.LocationEndChange=void 0,Hs.isLocationEndChange=function(e){return"LocationEndChange"===e.typeName};var Gs=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","LocationEndChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldEnd:o.oldEnd,newEnd:o.newEnd}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k,A,C,O,N;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,i=[],s=be(o=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=49;break}return d=(f=l.value).featureId,p=f.oldEnd,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(h=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),a.error(m),new Error(m);case 16:if(null===(c=a.debug)||void 0===c||c.call(a,"*** TOP level feature found: ".concat(JSON.stringify(h))),g=this.getFeatureFromId(h,d)){e.next=22;break}throw a.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(u=a.debug)||void 0===u||u.call(a,"*** Found feature: ".concat(JSON.stringify(g))),g.max!==p){e.next=27;break}i.push({feature:g,topLevelFeature:h}),e.next=47;break;case 27:if(!g.children){e.next=47;break}y=be(g.children),e.prev=29,y.s();case 31:if((v=y.n()).done){e.next=39;break}if(b=fe(v.value,2),(_=b[1]).max!==p){e.next=37;break}return null===(w=a.debug)||void 0===w||w.call(a,"*************** UPDATE CHILD FEATURE ID= ".concat(d,", CHILD: ").concat(JSON.stringify(_))),i.push({feature:_,topLevelFeature:h}),e.abrupt("break",39);case 37:e.next=31;break;case 39:e.next=44;break;case 41:e.prev=41,e.t0=e.catch(29),y.e(e.t0);case 44:return e.prev=44,y.f(),e.finish(44);case 47:e.next=6;break;case 49:e.next=54;break;case 51:e.prev=51,e.t1=e.catch(4),s.e(e.t1);case 54:return e.prev=54,s.f(),e.finish(54);case 57:S=be(o.entries()),e.prev=58,S.s();case 60:if((x=S.n()).done){e.next=78;break}return k=fe(x.value,2),O=(A=i[k[0]]).topLevelFeature,(C=A.feature).max=k[1].newEnd,O._id.equals(C._id)?O.markModified("end"):O.markModified("children"),e.prev=66,e.next=69,O.save();case 69:e.next=75;break;case 71:throw e.prev=71,e.t2=e.catch(66),null===(N=a.debug)||void 0===N||N.call(a,"*** FAILED: ".concat(e.t2)),e.t2;case 75:null===(E=a.debug)||void 0===E||E.call(a,"*** Object updated in Mongo. New object: ".concat(JSON.stringify(O)));case 76:e.next=60;break;case 78:e.next=83;break;case 80:e.prev=80,e.t3=e.catch(58),S.e(e.t3);case 83:return e.prev=83,S.f(),e.finish(83);case 86:case"end":return e.stop()}}),e,this,[[4,51,54,57],[29,41,44,47],[58,80,83,86],[66,71]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=be(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=fe(r.value,2),a=o[0],s=t.getFeature(i=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 10:s.setMax(this.changes[a].newEnd);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new a({changedIds:pe(this.changedIds).reverse(),typeName:r,changes:pe(t).reverse().map((function(e){return{featureId:e.featureId,oldEnd:e.newEnd,newEnd:e.oldEnd}})),assembly:e},{logger:n})}}]),a}(or.FeatureChange);Hs.LocationEndChange=Gs;var Ws={};Object.defineProperty(Ws,"__esModule",{value:!0}),Ws.LocationStartChange=void 0,Ws.isLocationStartChange=function(e){return"LocationStartChange"===e.typeName};var $s=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","LocationStartChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStart:o.oldStart,newStart:o.newStart}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k,A,C,O,N;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,i=[],s=be(o=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=49;break}return d=(f=l.value).featureId,p=f.oldStart,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(h=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),a.error(m),new Error(m);case 16:if(null===(c=a.debug)||void 0===c||c.call(a,"*** TOP level feature found: ".concat(JSON.stringify(h))),g=this.getFeatureFromId(h,d)){e.next=22;break}throw a.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(u=a.debug)||void 0===u||u.call(a,"*** Found feature: ".concat(JSON.stringify(g))),g.min!==p){e.next=27;break}i.push({feature:g,topLevelFeature:h}),e.next=47;break;case 27:if(!g.children){e.next=47;break}y=be(g.children),e.prev=29,y.s();case 31:if((v=y.n()).done){e.next=39;break}if(b=fe(v.value,2),(_=b[1]).min!==p){e.next=37;break}return null===(w=a.debug)||void 0===w||w.call(a,"*** UPDATE CHILD FEATURE ID= ".concat(d,", CHILD: ").concat(JSON.stringify(_))),i.push({feature:_,topLevelFeature:h}),e.abrupt("break",39);case 37:e.next=31;break;case 39:e.next=44;break;case 41:e.prev=41,e.t0=e.catch(29),y.e(e.t0);case 44:return e.prev=44,y.f(),e.finish(44);case 47:e.next=6;break;case 49:e.next=54;break;case 51:e.prev=51,e.t1=e.catch(4),s.e(e.t1);case 54:return e.prev=54,s.f(),e.finish(54);case 57:S=be(o.entries()),e.prev=58,S.s();case 60:if((x=S.n()).done){e.next=78;break}return k=fe(x.value,2),O=(A=i[k[0]]).topLevelFeature,(C=A.feature).min=k[1].newStart,O._id.equals(C._id)?O.markModified("start"):O.markModified("children"),e.prev=66,e.next=69,O.save();case 69:e.next=75;break;case 71:throw e.prev=71,e.t2=e.catch(66),null===(N=a.debug)||void 0===N||N.call(a,"*** FAILED: ".concat(e.t2)),e.t2;case 75:null===(E=a.debug)||void 0===E||E.call(a,"*** Object updated in Mongo. New object: ".concat(JSON.stringify(O)));case 76:e.next=60;break;case 78:e.next=83;break;case 80:e.prev=80,e.t3=e.catch(58),S.e(e.t3);case 83:return e.prev=83,S.f(),e.finish(83);case 86:case"end":return e.stop()}}),e,this,[[4,51,54,57],[29,41,44,47],[58,80,83,86],[66,71]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=be(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=fe(r.value,2),a=o[0],s=t.getFeature(i=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 10:s.setMin(this.changes[a].newStart);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new a({changedIds:pe(this.changedIds).reverse(),typeName:r,changes:pe(t).reverse().map((function(e){return{featureId:e.featureId,oldStart:e.newStart,newStart:e.oldStart}})),assembly:e},{logger:n})}}]),a}(or.FeatureChange);Ws.LocationStartChange=$s;var Vs={};Object.defineProperty(Vs,"__esModule",{value:!0}),Vs.StrandChange=void 0;var Js=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","StrandChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldStrand:o.oldStrand,newStrand:o.newStrand}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,i=[],s=be(o=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=30;break}return d=(f=l.value).featureId,p=f.oldStrand,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(h=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),a.error(m),new Error(m);case 16:if(null===(c=a.debug)||void 0===c||c.call(a,"*** Feature found: ".concat(JSON.stringify(h))),g=this.getFeatureFromId(h,d)){e.next=22;break}throw a.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(u=a.debug)||void 0===u||u.call(a,"*** Found feature: ".concat(JSON.stringify(g))),g.strand===p){e.next=27;break}throw y="*** ERROR: Feature's current strand \"".concat(h.strand,'" doesn\'t match with expected value "').concat(p,'"'),a.error(y),new Error(y);case 27:i.push({feature:g,topLevelFeature:h});case 28:e.next=6;break;case 30:e.next=35;break;case 32:e.prev=32,e.t0=e.catch(4),s.e(e.t0);case 35:return e.prev=35,s.f(),e.finish(35);case 38:v=be(o.entries()),e.prev=39,v.s();case 41:if((b=v.n()).done){e.next=59;break}return w=fe(b.value,2),E=(S=i[w[0]]).topLevelFeature,(x=S.feature).strand=w[1].newStrand,E._id.equals(x._id)?E.markModified("strand"):E.markModified("children"),e.prev=47,e.next=50,E.save();case 50:e.next=56;break;case 52:throw e.prev=52,e.t1=e.catch(47),null===(k=a.debug)||void 0===k||k.call(a,"*** FAILED: ".concat(e.t1)),e.t1;case 56:null===(_=a.debug)||void 0===_||_.call(a,"*** Object updated in Mongo. New object: ".concat(JSON.stringify(E)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=be(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=fe(r.value,2),a=o[0],s=t.getFeature(i=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 10:s.setStrand(this.changes[a].newStrand);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new a({changedIds:pe(this.changedIds).reverse(),typeName:r,changes:pe(t).reverse().map((function(e){return{featureId:e.featureId,oldStrand:e.newStrand,newStrand:e.oldStrand}})),assembly:e},{logger:n})}}]),a}(or.FeatureChange);Vs.StrandChange=Js;var Ys={};Object.defineProperty(Ys,"__esModule",{value:!0}),Ys.TypeChange=void 0;var Ks=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","TypeChange"),te(le(n),"changes",void 0),n.changes="changes"in e?e.changes:[e],n}return ee(a,[{key:"toJSON",value:function(){var e=this.assembly,t=this.changedIds,n=this.changes,r=this.typeName;if(1===n.length){var o=fe(n,1)[0];return{typeName:r,changedIds:t,assembly:e,featureId:o.featureId,oldType:o.oldType,newType:o.newType}}return{typeName:r,changedIds:t,assembly:e,changes:n}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d,p,h,m,g,y,v,b,_,w,S,x,E,k;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.featureModel,r=t.session,a=this.logger,i=[],s=be(o=this.changes),e.prev=4,s.s();case 6:if((l=s.n()).done){e.next=30;break}return d=(f=l.value).featureId,p=f.oldType,e.next=11,n.findOne({allIds:d}).session(r).exec();case 11:if(h=e.sent){e.next=16;break}throw m="*** ERROR: The following featureId was not found in database ='".concat(d,"'"),a.error(m),new Error(m);case 16:if(null===(c=a.debug)||void 0===c||c.call(a,"*** Feature found: ".concat(JSON.stringify(h))),g=this.getFeatureFromId(h,d)){e.next=22;break}throw a.error("ERROR when searching feature by featureId"),new Error("ERROR when searching feature by featureId");case 22:if(null===(u=a.debug)||void 0===u||u.call(a,"*** Found feature: ".concat(JSON.stringify(g))),g.type===p){e.next=27;break}throw y="*** ERROR: Feature's current type \"".concat(h.type,'" doesn\'t match with expected value "').concat(p,'"'),a.error(y),new Error(y);case 27:i.push({feature:g,topLevelFeature:h});case 28:e.next=6;break;case 30:e.next=35;break;case 32:e.prev=32,e.t0=e.catch(4),s.e(e.t0);case 35:return e.prev=35,s.f(),e.finish(35);case 38:v=be(o.entries()),e.prev=39,v.s();case 41:if((b=v.n()).done){e.next=59;break}return w=fe(b.value,2),E=(S=i[w[0]]).topLevelFeature,(x=S.feature).type=w[1].newType,E._id.equals(x._id)?E.markModified("type"):E.markModified("children"),e.prev=47,e.next=50,E.save();case 50:e.next=56;break;case 52:throw e.prev=52,e.t1=e.catch(47),null===(k=a.debug)||void 0===k||k.call(a,"*** FAILED: ".concat(e.t1)),e.t1;case 56:null===(_=a.debug)||void 0===_||_.call(a,"*** Object updated in Mongo. New object: ".concat(JSON.stringify(E)));case 57:e.next=41;break;case 59:e.next=64;break;case 61:e.prev=61,e.t2=e.catch(39),v.e(e.t2);case 64:return e.prev=64,v.f(),e.finish(64);case 67:case"end":return e.stop()}}),e,this,[[4,32,35,38],[39,61,64,67],[47,52]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){var n,r,o,a,i,s;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:if(t){e.next=2;break}throw new Error("No data store");case 2:n=be(this.changedIds.entries()),e.prev=3,n.s();case 5:if((r=n.n()).done){e.next=13;break}if(o=fe(r.value,2),a=o[0],s=t.getFeature(i=o[1])){e.next=10;break}throw new Error('Could not find feature with identifier "'.concat(i,'"'));case 10:s.setType(this.changes[a].newType);case 11:e.next=5;break;case 13:e.next=18;break;case 15:e.prev=15,e.t0=e.catch(3),n.e(e.t0);case 18:return e.prev=18,n.f(),e.finish(18);case 21:case"end":return e.stop()}}),e,this,[[3,15,18,21]])}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){var e=this.assembly,t=this.changes,n=this.logger,r=this.typeName;return new a({changedIds:pe(this.changedIds).reverse(),typeName:r,changes:pe(t).reverse().map((function(e){return{featureId:e.featureId,oldType:e.newType,newType:e.oldType}})),assembly:e},{logger:n})}}]),a}(or.FeatureChange);Ys.TypeChange=Ks;var Zs={};Object.defineProperty(Zs,"__esModule",{value:!0}),Zs.UserChange=void 0;var Xs=function(e){ne(a,e);var t,n,r,o=ce(a);function a(e,t){var n;return X(this,a),te(le(n=o.call(this,e,t)),"typeName","UserChange"),te(le(n),"changes",void 0),te(le(n),"userId",void 0),n.changes="changes"in e?e.changes:[e],n.userId=e.userId,n}return ee(a,[{key:"toJSON",value:function(){var e=this.changes,t=this.typeName,n=this.userId;return 1===e.length?{typeName:t,userId:n,role:fe(e,1)[0].role}:{typeName:t,userId:n,changes:e}}},{key:"executeOnServer",value:(r=Z(J().mark((function e(t){var n,r,o,a,i,s,l,c,u,f,d;return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:n=t.session,r=t.userModel,a=this.logger,i=this.userId,s=be(o=this.changes),e.prev=3,s.s();case 5:if((l=s.n()).done){e.next=18;break}return u=l.value,null===(c=a.debug)||void 0===c||c.call(a,"change: ".concat(JSON.stringify(o))),f=u.role,e.next=11,r.findByIdAndUpdate(i,{role:f}).session(n).exec();case 11:if(e.sent){e.next=16;break}throw d='*** ERROR: User with id "'.concat(i,'" not found'),a.error(d),new Error(d);case 16:e.next=5;break;case 18:e.next=23;break;case 20:e.prev=20,e.t0=e.catch(3),s.e(e.t0);case 23:return e.prev=23,s.f(),e.finish(23);case 26:case"end":return e.stop()}}),e,this,[[3,20,23,26]])}))),function(e){return r.apply(this,arguments)})},{key:"executeOnLocalGFF3",value:(n=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:throw new Error("executeOnLocalGFF3 not implemented");case 1:case"end":return e.stop()}}),e)}))),function(e){return n.apply(this,arguments)})},{key:"executeOnClient",value:(t=Z(J().mark((function e(t){return J().wrap((function(e){for(;;)switch(e.prev=e.next){case 0:case"end":return e.stop()}}),e)}))),function(e){return t.apply(this,arguments)})},{key:"getInverse",value:function(){return new a({typeName:this.typeName,changes:this.changes,userId:this.userId},{logger:this.logger})}}]),a}(or.Change);Zs.UserChange=Xs,function(e){Object.defineProperty(e,"__esModule",{value:!0}),e.changes=void 0;var t=Xe;e.changes={AddAssemblyAndFeaturesFromFileChange:nr.AddAssemblyAndFeaturesFromFileChange,AddAssemblyFromFileChange:vs.AddAssemblyFromFileChange,AddAssemblyFromExternalChange:Dr.AddAssemblyFromExternalChange,AddFeatureChange:ws.AddFeatureChange,AddFeaturesFromFileChange:Cs.AddFeaturesFromFileChange,DeleteAssemblyChange:Is.DeleteAssemblyChange,DeleteFeatureChange:Ss.DeleteFeatureChange,DeleteUserChange:Fs.DeleteUserChange,FeatureAttributeChange:Ds.FeatureAttributeChange,ImportJBrowseConfigChange:qs.ImportJBrowseConfigChange,LocationEndChange:Hs.LocationEndChange,LocationStartChange:Ws.LocationStartChange,StrandChange:Vs.StrandChange,TypeChange:Ys.TypeChange,UserChange:Zs.UserChange,AddRefSeqAliasesChange:Ns.AddRefSeqAliasesChange},t.__exportStar(nr,e),t.__exportStar(vs,e),t.__exportStar(Dr,e),t.__exportStar(ws,e),t.__exportStar(Cs,e),t.__exportStar(Is,e),t.__exportStar(Ss,e),t.__exportStar(Fs,e),t.__exportStar(Ds,e),t.__exportStar(qs,e),t.__exportStar(Hs,e),t.__exportStar(Ws,e),t.__exportStar(Vs,e),t.__exportStar(Ys,e),t.__exportStar(Zs,e),t.__exportStar(Ns,e)}(tr);var 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n=this,r=this.request({method:"POST",data:e});r.on("success",t),r.on("error",(function(e,t){n.onError("xhr post error",e,t)}))}},{key:"doPoll",value:function(){var e=this,t=this.request();t.on("data",this.onData.bind(this)),t.on("error",(function(t,n){e.onError("xhr poll error",t,n)})),this.pollXhr=t}}]),n}(Rc),zc=function(e){ne(n,e);var t=ce(n);function n(e,r){var o;return X(this,n),Cc(le(o=t.call(this)),r),o.opts=r,o.method=r.method||"GET",o.uri=e,o.data=void 0!==r.data?r.data:null,o.create(),o}return ee(n,[{key:"create",value:function(){var e,t=this,r=Ec(this.opts,"agent","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","autoUnref");r.xdomain=!!this.opts.xd;var o=this.xhr=new Lc(r);try{o.open(this.method,this.uri,!0);try{if(this.opts.extraHeaders)for(var a in o.setDisableHeaderCheck&&o.setDisableHeaderCheck(!0),this.opts.extraHeaders)this.opts.extraHeaders.hasOwnProperty(a)&&o.setRequestHeader(a,this.opts.extraHeaders[a])}catch(e){}if("POST"===this.method)try{o.setRequestHeader("Content-type","text/plain;charset=UTF-8")}catch(e){}try{o.setRequestHeader("Accept","*/*")}catch(e){}null===(e=this.opts.cookieJar)||void 0===e||e.addCookies(o),"withCredentials"in o&&(o.withCredentials=this.opts.withCredentials),this.opts.requestTimeout&&(o.timeout=this.opts.requestTimeout),o.onreadystatechange=function(){var e;3===o.readyState&&(null===(e=t.opts.cookieJar)||void 0===e||e.parseCookies(o)),4===o.readyState&&(200===o.status||1223===o.status?t.onLoad():t.setTimeoutFn((function(){t.onError("number"==typeof o.status?o.status:0)}),0))},o.send(this.data)}catch(e){return void this.setTimeoutFn((function(){t.onError(e)}),0)}"undefined"!=typeof document&&(this.index=n.requestsCount++,n.requests[this.index]=this)}},{key:"onError",value:function(e){this.emitReserved("error",e,this.xhr),this.cleanup(!0)}},{key:"cleanup",value:function(e){if(null!=this.xhr){if(this.xhr.onreadystatechange=qc,e)try{this.xhr.abort()}catch(e){}"undefined"!=typeof document&&delete n.requests[this.index],this.xhr=null}}},{key:"onLoad",value:function(){var e=this.xhr.responseText;null!==e&&(this.emitReserved("data",e),this.emitReserved("success"),this.cleanup())}},{key:"abort",value:function(){this.cleanup()}}]),n}(Sc);function Hc(){for(var e in zc.requests)zc.requests.hasOwnProperty(e)&&zc.requests[e].abort()}zc.requestsCount=0,zc.requests={},"undefined"!=typeof document&&("function"==typeof attachEvent?attachEvent("onunload",Hc):"function"==typeof addEventListener&&addEventListener("onpagehide"in xc?"pagehide":"unload",Hc,!1));var Gc=function(){return"function"==typeof Promise&&"function"==typeof Promise.resolve?function(e){return Promise.resolve().then(e)}:function(e,t){return t(e,0)}}(),Wc=xc.WebSocket||xc.MozWebSocket,$c="undefined"!=typeof navigator&&"string"==typeof navigator.product&&"reactnative"===navigator.product.toLowerCase(),Vc=function(e){ne(n,e);var t=ce(n);function n(e){var r;return X(this,n),(r=t.call(this,e)).supportsBinary=!e.forceBase64,r}return ee(n,[{key:"name",get:function(){return"websocket"}},{key:"doOpen",value:function(){if(this.check()){var e=this.uri(),t=this.opts.protocols,n=$c?{}:Ec(this.opts,"agent","perMessageDeflate","pfx","key","passphrase","cert","ca","ciphers","rejectUnauthorized","localAddress","protocolVersion","origin","maxPayload","family","checkServerIdentity");this.opts.extraHeaders&&(n.headers=this.opts.extraHeaders);try{this.ws=$c?new Wc(e,t,n):t?new Wc(e,t):new Wc(e)}catch(e){return this.emitReserved("error",e)}this.ws.binaryType=this.socket.binaryType,this.addEventListeners()}}},{key:"addEventListeners",value:function(){var e=this;this.ws.onopen=function(){e.opts.autoUnref&&e.ws._socket.unref(),e.onOpen()},this.ws.onclose=function(t){return e.onClose({description:"websocket connection closed",context:t})},this.ws.onmessage=function(t){return e.onData(t.data)},this.ws.onerror=function(t){return e.onError("websocket error",t)}}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;cc(e[r],t.supportsBinary,(function(e){try{t.ws.send(e)}catch(e){}n&&Gc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){void 0!==this.ws&&(this.ws.close(),this.ws=null)}},{key:"uri",value:function(){var e=this.opts.secure?"wss":"ws",t=this.query||{};return this.opts.timestampRequests&&(t[this.opts.timestampParam]=Fc()),this.supportsBinary||(t.b64=1),this.createUri(e,t)}},{key:"check",value:function(){return!!Wc}}]),n}(Rc),Jc=function(e){ne(n,e);var t=ce(n);function n(){return X(this,n),t.apply(this,arguments)}return ee(n,[{key:"name",get:function(){return"webtransport"}},{key:"doOpen",value:function(){var e=this;"function"==typeof WebTransport&&(this.transport=new WebTransport(this.createUri("https"),this.opts.transportOptions[this.name]),this.transport.closed.then((function(){e.onClose()})).catch((function(t){e.onError("webtransport error",t)})),this.transport.ready.then((function(){e.transport.createBidirectionalStream().then((function(t){var n=function(e,t){hc||(hc=new TextDecoder);var n=[],r=0,o=-1,a=!1;return new TransformStream({transform:function(i,s){for(n.push(i);;){if(0===r){if(_c(n)<1)break;var l=wc(n,1);a=128==(128&l[0]),r=(o=127&l[0])<126?3:126===o?1:2}else if(1===r){if(_c(n)<2)break;var c=wc(n,2);o=new DataView(c.buffer,c.byteOffset,c.length).getUint16(0),r=3}else if(2===r){if(_c(n)<8)break;var u=wc(n,8),f=new DataView(u.buffer,u.byteOffset,u.length),d=f.getUint32(0);if(d>Math.pow(2,21)-1){s.enqueue(ac);break}o=d*Math.pow(2,32)+f.getUint32(4),r=3}else{if(_c(n)<o)break;var p=wc(n,o);s.enqueue(gc(a?p:hc.decode(p),t)),r=0}if(0===o||o>e){s.enqueue(ac);break}}}})}(Number.MAX_SAFE_INTEGER,e.socket.binaryType),r=t.readable.pipeThrough(n).getReader(),o=new TransformStream({transform:function(e,t){!function(e,t){ic&&e.data instanceof Blob?e.data.arrayBuffer().then(fc).then(t):sc&&(e.data instanceof ArrayBuffer||lc(e.data))?t(fc(e.data)):cc(e,!1,(function(e){oc||(oc=new TextEncoder),t(oc.encode(e))}))}(e,(function(n){var r,o=n.length;if(o<126)r=new Uint8Array(1),new DataView(r.buffer).setUint8(0,o);else if(o<65536){r=new Uint8Array(3);var a=new DataView(r.buffer);a.setUint8(0,126),a.setUint16(1,o)}else{r=new Uint8Array(9);var i=new DataView(r.buffer);i.setUint8(0,127),i.setBigUint64(1,BigInt(o))}e.data&&"string"!=typeof e.data&&(r[0]|=128),t.enqueue(r),t.enqueue(n)}))}});o.readable.pipeTo(t.writable),e.writer=o.writable.getWriter(),function t(){r.read().then((function(n){n.done||(e.onPacket(n.value),t())})).catch((function(e){}))}();var a={type:"open"};e.query.sid&&(a.data='{"sid":"'.concat(e.query.sid,'"}')),e.writer.write(a).then((function(){return e.onOpen()}))}))})))}},{key:"write",value:function(e){var t=this;this.writable=!1;for(var n=function(){var n=r===e.length-1;t.writer.write(e[r]).then((function(){n&&Gc((function(){t.writable=!0,t.emitReserved("drain")}),t.setTimeoutFn)}))},r=0;r<e.length;r++)n()}},{key:"doClose",value:function(){var e;null===(e=this.transport)||void 0===e||e.close()}}]),n}(Rc),Yc={websocket:Vc,webtransport:Jc,polling:Uc},Kc=/^(?:(?![^:@\/?#]+:[^:@\/]*@)(http|https|ws|wss):\/\/)?((?:(([^:@\/?#]*)(?::([^:@\/?#]*))?)?@)?((?:[a-f0-9]{0,4}:){2,7}[a-f0-9]{0,4}|[^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/,Zc=["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"];function Xc(e){var t,n,r=e,o=e.indexOf("["),a=e.indexOf("]");-1!=o&&-1!=a&&(e=e.substring(0,o)+e.substring(o,a).replace(/:/g,";")+e.substring(a,e.length));for(var i,s=Kc.exec(e||""),l={},c=14;c--;)l[Zc[c]]=s[c]||"";return-1!=o&&-1!=a&&(l.source=r,l.host=l.host.substring(1,l.host.length-1).replace(/;/g,":"),l.authority=l.authority.replace("[","").replace("]","").replace(/;/g,":"),l.ipv6uri=!0),l.pathNames=(n=(t=l.path).replace(/\/{2,9}/g,"/").split("/"),"/"!=t.slice(0,1)&&0!==t.length||n.splice(0,1),"/"==t.slice(-1)&&n.splice(n.length-1,1),n),l.queryKey=(i={},l.query.replace(/(?:^|&)([^&=]*)=?([^&]*)/g,(function(e,t,n){t&&(i[t]=n)})),i),l}var Qc=function(e){ne(n,e);var t=ce(n);function n(e){var r,o=arguments.length>1&&void 0!==arguments[1]?arguments[1]:{};return X(this,n),(r=t.call(this)).binaryType="arraybuffer",r.writeBuffer=[],e&&"object"===Y(e)&&(o=e,e=null),e?(e=Xc(e),o.hostname=e.host,o.secure="https"===e.protocol||"wss"===e.protocol,o.port=e.port,e.query&&(o.query=e.query)):o.host&&(o.hostname=Xc(o.host).host),Cc(le(r),o),r.secure=null!=o.secure?o.secure:"undefined"!=typeof location&&"https:"===location.protocol,o.hostname&&!o.port&&(o.port=r.secure?"443":"80"),r.hostname=o.hostname||("undefined"!=typeof location?location.hostname:"localhost"),r.port=o.port||("undefined"!=typeof location&&location.port?location.port:r.secure?"443":"80"),r.transports=o.transports||["polling","websocket","webtransport"],r.writeBuffer=[],r.prevBufferLen=0,r.opts=Object.assign({path:"/engine.io",agent:!1,withCredentials:!1,upgrade:!0,timestampParam:"t",rememberUpgrade:!1,addTrailingSlash:!0,rejectUnauthorized:!0,perMessageDeflate:{threshold:1024},transportOptions:{},closeOnBeforeunload:!1},o),r.opts.path=r.opts.path.replace(/\/$/,"")+(r.opts.addTrailingSlash?"/":""),"string"==typeof r.opts.query&&(r.opts.query=function(e){for(var t={},n=e.split("&"),r=0,o=n.length;r<o;r++){var a=n[r].split("=");t[decodeURIComponent(a[0])]=decodeURIComponent(a[1])}return t}(r.opts.query)),r.id=null,r.upgrades=null,r.pingInterval=null,r.pingTimeout=null,r.pingTimeoutTimer=null,"function"==typeof addEventListener&&(r.opts.closeOnBeforeunload&&(r.beforeunloadEventListener=function(){r.transport&&(r.transport.removeAllListeners(),r.transport.close())},addEventListener("beforeunload",r.beforeunloadEventListener,!1)),"localhost"!==r.hostname&&(r.offlineEventListener=function(){r.onClose("transport close",{description:"network connection lost"})},addEventListener("offline",r.offlineEventListener,!1))),r.open(),r}return ee(n,[{key:"createTransport",value:function(e){var t=Object.assign({},this.opts.query);t.EIO=4,t.transport=e,this.id&&(t.sid=this.id);var n=Object.assign({},this.opts,{query:t,socket:this,hostname:this.hostname,secure:this.secure,port:this.port},this.opts.transportOptions[e]);return new Yc[e](n)}},{key:"open",value:function(){var e,t=this;if(this.opts.rememberUpgrade&&n.priorWebsocketSuccess&&-1!==this.transports.indexOf("websocket"))e="websocket";else{if(0===this.transports.length)return void this.setTimeoutFn((function(){t.emitReserved("error","No transports available")}),0);e=this.transports[0]}this.readyState="opening";try{e=this.createTransport(e)}catch(e){return this.transports.shift(),void this.open()}e.open(),this.setTransport(e)}},{key:"setTransport",value:function(e){var t=this;this.transport&&this.transport.removeAllListeners(),this.transport=e,e.on("drain",this.onDrain.bind(this)).on("packet",this.onPacket.bind(this)).on("error",this.onError.bind(this)).on("close",(function(e){return t.onClose("transport close",e)}))}},{key:"probe",value:function(e){var t=this,r=this.createTransport(e),o=!1;n.priorWebsocketSuccess=!1;var a=function(){o||(r.send([{type:"ping",data:"probe"}]),r.once("packet",(function(e){if(!o)if("pong"===e.type&&"probe"===e.data){if(t.upgrading=!0,t.emitReserved("upgrading",r),!r)return;n.priorWebsocketSuccess="websocket"===r.name,t.transport.pause((function(){o||"closed"!==t.readyState&&(f(),t.setTransport(r),r.send([{type:"upgrade"}]),t.emitReserved("upgrade",r),r=null,t.upgrading=!1,t.flush())}))}else{var a=new Error("probe error");a.transport=r.name,t.emitReserved("upgradeError",a)}})))};function i(){o||(o=!0,f(),r.close(),r=null)}var s=function(e){var n=new Error("probe error: "+e);n.transport=r.name,i(),t.emitReserved("upgradeError",n)};function l(){s("transport closed")}function c(){s("socket closed")}function u(e){r&&e.name!==r.name&&i()}var f=function(){r.removeListener("open",a),r.removeListener("error",s),r.removeListener("close",l),t.off("close",c),t.off("upgrading",u)};r.once("open",a),r.once("error",s),r.once("close",l),this.once("close",c),this.once("upgrading",u),-1!==this.upgrades.indexOf("webtransport")&&"webtransport"!==e?this.setTimeoutFn((function(){o||r.open()}),200):r.open()}},{key:"onOpen",value:function(){if(this.readyState="open",n.priorWebsocketSuccess="websocket"===this.transport.name,this.emitReserved("open"),this.flush(),"open"===this.readyState&&this.opts.upgrade)for(var e=0,t=this.upgrades.length;e<t;e++)this.probe(this.upgrades[e])}},{key:"onPacket",value:function(e){if("opening"===this.readyState||"open"===this.readyState||"closing"===this.readyState)switch(this.emitReserved("packet",e),this.emitReserved("heartbeat"),this.resetPingTimeout(),e.type){case"open":this.onHandshake(JSON.parse(e.data));break;case"ping":this.sendPacket("pong"),this.emitReserved("ping"),this.emitReserved("pong");break;case"error":var t=new Error("server error");t.code=e.data,this.onError(t);break;case"message":this.emitReserved("data",e.data),this.emitReserved("message",e.data)}}},{key:"onHandshake",value:function(e){this.emitReserved("handshake",e),this.id=e.sid,this.transport.query.sid=e.sid,this.upgrades=this.filterUpgrades(e.upgrades),this.pingInterval=e.pingInterval,this.pingTimeout=e.pingTimeout,this.maxPayload=e.maxPayload,this.onOpen(),"closed"!==this.readyState&&this.resetPingTimeout()}},{key:"resetPingTimeout",value:function(){var e=this;this.clearTimeoutFn(this.pingTimeoutTimer),this.pingTimeoutTimer=this.setTimeoutFn((function(){e.onClose("ping timeout")}),this.pingInterval+this.pingTimeout),this.opts.autoUnref&&this.pingTimeoutTimer.unref()}},{key:"onDrain",value:function(){this.writeBuffer.splice(0,this.prevBufferLen),this.prevBufferLen=0,0===this.writeBuffer.length?this.emitReserved("drain"):this.flush()}},{key:"flush",value:function(){if("closed"!==this.readyState&&this.transport.writable&&!this.upgrading&&this.writeBuffer.length){var e=this.getWritablePackets();this.transport.send(e),this.prevBufferLen=e.length,this.emitReserved("flush")}}},{key:"getWritablePackets",value:function(){if(!(this.maxPayload&&"polling"===this.transport.name&&this.writeBuffer.length>1))return this.writeBuffer;for(var e,t=1,n=0;n<this.writeBuffer.length;n++){var r=this.writeBuffer[n].data;if(r&&(t+="string"==typeof(e=r)?function(e){for(var t=0,n=0,r=0,o=e.length;r<o;r++)(t=e.charCodeAt(r))<128?n+=1:t<2048?n+=2:t<55296||t>=57344?n+=3:(r++,n+=4);return n}(e):Math.ceil(1.33*(e.byteLength||e.size))),n>0&&t>this.maxPayload)return this.writeBuffer.slice(0,n);t+=2}return this.writeBuffer}},{key:"write",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"send",value:function(e,t,n){return this.sendPacket("message",e,t,n),this}},{key:"sendPacket",value:function(e,t,n,r){if("function"==typeof t&&(r=t,t=void 0),"function"==typeof n&&(r=n,n=null),"closing"!==this.readyState&&"closed"!==this.readyState){(n=n||{}).compress=!1!==n.compress;var o={type:e,data:t,options:n};this.emitReserved("packetCreate",o),this.writeBuffer.push(o),r&&this.once("flush",r),this.flush()}}},{key:"close",value:function(){var e=this,t=function(){e.onClose("forced close"),e.transport.close()},n=function n(){e.off("upgrade",n),e.off("upgradeError",n),t()},r=function(){e.once("upgrade",n),e.once("upgradeError",n)};return"opening"!==this.readyState&&"open"!==this.readyState||(this.readyState="closing",this.writeBuffer.length?this.once("drain",(function(){e.upgrading?r():t()})):this.upgrading?r():t()),this}},{key:"onError",value:function(e){n.priorWebsocketSuccess=!1,this.emitReserved("error",e),this.onClose("transport error",e)}},{key:"onClose",value:function(e,t){"opening"!==this.readyState&&"open"!==this.readyState&&"closing"!==this.readyState||(this.clearTimeoutFn(this.pingTimeoutTimer),this.transport.removeAllListeners("close"),this.transport.close(),this.transport.removeAllListeners(),"function"==typeof removeEventListener&&(removeEventListener("beforeunload",this.beforeunloadEventListener,!1),removeEventListener("offline",this.offlineEventListener,!1)),this.readyState="closed",this.id=null,this.emitReserved("close",e,t),this.writeBuffer=[],this.prevBufferLen=0)}},{key:"filterUpgrades",value:function(e){for(var t=[],n=0,r=e.length;n<r;n++)~this.transports.indexOf(e[n])&&t.push(e[n]);return t}}]),n}(Sc);Qc.protocol=4;var eu="function"==typeof ArrayBuffer,tu=function(e){return"function"==typeof ArrayBuffer.isView?ArrayBuffer.isView(e):e.buffer instanceof ArrayBuffer},nu=Object.prototype.toString,ru="function"==typeof Blob||"undefined"!=typeof Blob&&"[object BlobConstructor]"===nu.call(Blob),ou="function"==typeof File||"undefined"!=typeof File&&"[object FileConstructor]"===nu.call(File);function au(e){return eu&&(e instanceof ArrayBuffer||tu(e))||ru&&e instanceof Blob||ou&&e instanceof File}function iu(e,t){if(!e||"object"!==Y(e))return!1;if(Array.isArray(e)){for(var n=0,r=e.length;n<r;n++)if(iu(e[n]))return!0;return!1}if(au(e))return!0;if(e.toJSON&&"function"==typeof e.toJSON&&1===arguments.length)return iu(e.toJSON(),!0);for(var o in e)if(Object.prototype.hasOwnProperty.call(e,o)&&iu(e[o]))return!0;return!1}function su(e){var t=[],n=e;return n.data=lu(e.data,t),n.attachments=t.length,{packet:n,buffers:t}}function lu(e,t){if(!e)return e;if(au(e)){var n={_placeholder:!0,num:t.length};return t.push(e),n}if(Array.isArray(e)){for(var r=new Array(e.length),o=0;o<e.length;o++)r[o]=lu(e[o],t);return r}if("object"===Y(e)&&!(e instanceof Date)){var a={};for(var i in e)Object.prototype.hasOwnProperty.call(e,i)&&(a[i]=lu(e[i],t));return a}return e}function cu(e,t){return e.data=uu(e.data,t),delete e.attachments,e}function uu(e,t){if(!e)return e;if(e&&!0===e._placeholder){if("number"==typeof e.num&&e.num>=0&&e.num<t.length)return t[e.num];throw new Error("illegal attachments")}if(Array.isArray(e))for(var n=0;n<e.length;n++)e[n]=uu(e[n],t);else if("object"===Y(e))for(var r in e)Object.prototype.hasOwnProperty.call(e,r)&&(e[r]=uu(e[r],t));return e}var fu,du=["connect","connect_error","disconnect","disconnecting","newListener","removeListener"];!function(e){e[e.CONNECT=0]="CONNECT",e[e.DISCONNECT=1]="DISCONNECT",e[e.EVENT=2]="EVENT",e[e.ACK=3]="ACK",e[e.CONNECT_ERROR=4]="CONNECT_ERROR",e[e.BINARY_EVENT=5]="BINARY_EVENT",e[e.BINARY_ACK=6]="BINARY_ACK"}(fu||(fu={}));var pu=function(){function e(t){X(this,e),this.replacer=t}return ee(e,[{key:"encode",value:function(e){return e.type!==fu.EVENT&&e.type!==fu.ACK||!iu(e)?[this.encodeAsString(e)]:this.encodeAsBinary({type:e.type===fu.EVENT?fu.BINARY_EVENT:fu.BINARY_ACK,nsp:e.nsp,data:e.data,id:e.id})}},{key:"encodeAsString",value:function(e){var t=""+e.type;return e.type!==fu.BINARY_EVENT&&e.type!==fu.BINARY_ACK||(t+=e.attachments+"-"),e.nsp&&"/"!==e.nsp&&(t+=e.nsp+","),null!=e.id&&(t+=e.id),null!=e.data&&(t+=JSON.stringify(e.data,this.replacer)),t}},{key:"encodeAsBinary",value:function(e){var t=su(e),n=this.encodeAsString(t.packet),r=t.buffers;return r.unshift(n),r}}]),e}();function hu(e){return"[object Object]"===Object.prototype.toString.call(e)}var mu=function(e){ne(n,e);var t=ce(n);function n(e){var r;return X(this,n),(r=t.call(this)).reviver=e,r}return ee(n,[{key:"add",value:function(e){var t;if("string"==typeof e){if(this.reconstructor)throw new Error("got plaintext data when reconstructing a packet");var r=(t=this.decodeString(e)).type===fu.BINARY_EVENT;r||t.type===fu.BINARY_ACK?(t.type=r?fu.EVENT:fu.ACK,this.reconstructor=new gu(t),0===t.attachments&&ue(re(n.prototype),"emitReserved",this).call(this,"decoded",t)):ue(re(n.prototype),"emitReserved",this).call(this,"decoded",t)}else{if(!au(e)&&!e.base64)throw new Error("Unknown type: "+e);if(!this.reconstructor)throw new Error("got binary data when not reconstructing a packet");(t=this.reconstructor.takeBinaryData(e))&&(this.reconstructor=null,ue(re(n.prototype),"emitReserved",this).call(this,"decoded",t))}}},{key:"decodeString",value:function(e){var t=0,r={type:Number(e.charAt(0))};if(void 0===fu[r.type])throw new Error("unknown packet type "+r.type);if(r.type===fu.BINARY_EVENT||r.type===fu.BINARY_ACK){for(var o=t+1;"-"!==e.charAt(++t)&&t!=e.length;);var a=e.substring(o,t);if(a!=Number(a)||"-"!==e.charAt(t))throw new Error("Illegal attachments");r.attachments=Number(a)}if("/"===e.charAt(t+1)){for(var i=t+1;++t&&","!==e.charAt(t)&&t!==e.length;);r.nsp=e.substring(i,t)}else r.nsp="/";var s=e.charAt(t+1);if(""!==s&&Number(s)==s){for(var l=t+1;++t;){var c=e.charAt(t);if(null==c||Number(c)!=c){--t;break}if(t===e.length)break}r.id=Number(e.substring(l,t+1))}if(e.charAt(++t)){var u=this.tryParse(e.substr(t));if(!n.isPayloadValid(r.type,u))throw new Error("invalid payload");r.data=u}return r}},{key:"tryParse",value:function(e){try{return JSON.parse(e,this.reviver)}catch(e){return!1}}},{key:"destroy",value:function(){this.reconstructor&&(this.reconstructor.finishedReconstruction(),this.reconstructor=null)}}],[{key:"isPayloadValid",value:function(e,t){switch(e){case fu.CONNECT:return hu(t);case fu.DISCONNECT:return void 0===t;case fu.CONNECT_ERROR:return"string"==typeof t||hu(t);case fu.EVENT:case fu.BINARY_EVENT:return Array.isArray(t)&&("number"==typeof t[0]||"string"==typeof t[0]&&-1===du.indexOf(t[0]));case fu.ACK:case fu.BINARY_ACK:return Array.isArray(t)}}}]),n}(Sc),gu=function(){function e(t){X(this,e),this.packet=t,this.buffers=[],this.reconPack=t}return ee(e,[{key:"takeBinaryData",value:function(e){if(this.buffers.push(e),this.buffers.length===this.reconPack.attachments){var t=cu(this.reconPack,this.buffers);return this.finishedReconstruction(),t}return null}},{key:"finishedReconstruction",value:function(){this.reconPack=null,this.buffers=[]}}]),e}(),yu={__proto__:null,protocol:5,get PacketType(){return fu},Encoder:pu,Decoder:mu};function vu(e,t,n){return e.on(t,n),function(){e.off(t,n)}}var bu=Object.freeze({connect:1,connect_error:1,disconnect:1,disconnecting:1,newListener:1,removeListener:1}),_u=function(e){ne(n,e);var t=ce(n);function n(e,r,o){var a;return X(this,n),(a=t.call(this)).connected=!1,a.recovered=!1,a.receiveBuffer=[],a.sendBuffer=[],a._queue=[],a._queueSeq=0,a.ids=0,a.acks={},a.flags={},a.io=e,a.nsp=r,o&&o.auth&&(a.auth=o.auth),a._opts=Object.assign({},o),a.io._autoConnect&&a.open(),a}return ee(n,[{key:"disconnected",get:function(){return!this.connected}},{key:"subEvents",value:function(){if(!this.subs){var e=this.io;this.subs=[vu(e,"open",this.onopen.bind(this)),vu(e,"packet",this.onpacket.bind(this)),vu(e,"error",this.onerror.bind(this)),vu(e,"close",this.onclose.bind(this))]}}},{key:"active",get:function(){return!!this.subs}},{key:"connect",value:function(){return this.connected||(this.subEvents(),this.io._reconnecting||this.io.open(),"open"===this.io._readyState&&this.onopen()),this}},{key:"open",value:function(){return this.connect()}},{key:"send",value:function(){for(var e=arguments.length,t=new Array(e),n=0;n<e;n++)t[n]=arguments[n];return t.unshift("message"),this.emit.apply(this,t),this}},{key:"emit",value:function(e){if(bu.hasOwnProperty(e))throw new Error('"'+e.toString()+'" is a reserved event name');for(var t=arguments.length,n=new Array(t>1?t-1:0),r=1;r<t;r++)n[r-1]=arguments[r];if(n.unshift(e),this._opts.retries&&!this.flags.fromQueue&&!this.flags.volatile)return this._addToQueue(n),this;var o={type:fu.EVENT,data:n,options:{}};if(o.options.compress=!1!==this.flags.compress,"function"==typeof n[n.length-1]){var a=this.ids++,i=n.pop();this._registerAckCallback(a,i),o.id=a}return this.flags.volatile&&(!(this.io.engine&&this.io.engine.transport&&this.io.engine.transport.writable)||!this.connected)||(this.connected?(this.notifyOutgoingListeners(o),this.packet(o)):this.sendBuffer.push(o)),this.flags={},this}},{key:"_registerAckCallback",value:function(e,t){var n,r=this,o=null!==(n=this.flags.timeout)&&void 0!==n?n:this._opts.ackTimeout;if(void 0!==o){var a=this.io.setTimeoutFn((function(){delete r.acks[e];for(var n=0;n<r.sendBuffer.length;n++)r.sendBuffer[n].id===e&&r.sendBuffer.splice(n,1);t.call(r,new Error("operation has timed out"))}),o);this.acks[e]=function(){r.io.clearTimeoutFn(a);for(var e=arguments.length,n=new Array(e),o=0;o<e;o++)n[o]=arguments[o];t.apply(r,[null].concat(n))}}else this.acks[e]=t}},{key:"emitWithAck",value:function(e){for(var t=this,n=arguments.length,r=new Array(n>1?n-1:0),o=1;o<n;o++)r[o-1]=arguments[o];var a=void 0!==this.flags.timeout||void 0!==this._opts.ackTimeout;return new Promise((function(n,o){r.push((function(e,t){return a?e?o(e):n(t):n(e)})),t.emit.apply(t,[e].concat(r))}))}},{key:"_addToQueue",value:function(e){var t,n=this;"function"==typeof e[e.length-1]&&(t=e.pop());var r={id:this._queueSeq++,tryCount:0,pending:!1,args:e,flags:Object.assign({fromQueue:!0},this.flags)};e.push((function(e){if(r===n._queue[0]){if(null!==e)r.tryCount>n._opts.retries&&(n._queue.shift(),t&&t(e));else if(n._queue.shift(),t){for(var o=arguments.length,a=new Array(o>1?o-1:0),i=1;i<o;i++)a[i-1]=arguments[i];t.apply(void 0,[null].concat(a))}return r.pending=!1,n._drainQueue()}})),this._queue.push(r),this._drainQueue()}},{key:"_drainQueue",value:function(){if(this.connected&&0!==this._queue.length){var e=this._queue[0];e.pending&&!(arguments.length>0&&void 0!==arguments[0]&&arguments[0])||(e.pending=!0,e.tryCount++,this.flags=e.flags,this.emit.apply(this,e.args))}}},{key:"packet",value:function(e){e.nsp=this.nsp,this.io._packet(e)}},{key:"onopen",value:function(){var e=this;"function"==typeof this.auth?this.auth((function(t){e._sendConnectPacket(t)})):this._sendConnectPacket(this.auth)}},{key:"_sendConnectPacket",value:function(e){this.packet({type:fu.CONNECT,data:this._pid?Object.assign({pid:this._pid,offset:this._lastOffset},e):e})}},{key:"onerror",value:function(e){this.connected||this.emitReserved("connect_error",e)}},{key:"onclose",value:function(e,t){this.connected=!1,delete this.id,this.emitReserved("disconnect",e,t)}},{key:"onpacket",value:function(e){if(e.nsp===this.nsp)switch(e.type){case fu.CONNECT:e.data&&e.data.sid?this.onconnect(e.data.sid,e.data.pid):this.emitReserved("connect_error",new Error("It seems you are trying to reach a Socket.IO server in v2.x with a v3.x client, but they are not compatible (more information here: https://socket.io/docs/v3/migrating-from-2-x-to-3-0/)"));break;case fu.EVENT:case fu.BINARY_EVENT:this.onevent(e);break;case fu.ACK:case fu.BINARY_ACK:this.onack(e);break;case fu.DISCONNECT:this.ondisconnect();break;case fu.CONNECT_ERROR:this.destroy();var t=new Error(e.data.message);t.data=e.data.data,this.emitReserved("connect_error",t)}}},{key:"onevent",value:function(e){var t=e.data||[];null!=e.id&&t.push(this.ack(e.id)),this.connected?this.emitEvent(t):this.receiveBuffer.push(Object.freeze(t))}},{key:"emitEvent",value:function(e){if(this._anyListeners&&this._anyListeners.length){var t,r=be(this._anyListeners.slice());try{for(r.s();!(t=r.n()).done;)t.value.apply(this,e)}catch(e){r.e(e)}finally{r.f()}}ue(re(n.prototype),"emit",this).apply(this,e),this._pid&&e.length&&"string"==typeof e[e.length-1]&&(this._lastOffset=e[e.length-1])}},{key:"ack",value:function(e){var t=this,n=!1;return function(){if(!n){n=!0;for(var r=arguments.length,o=new Array(r),a=0;a<r;a++)o[a]=arguments[a];t.packet({type:fu.ACK,id:e,data:o})}}}},{key:"onack",value:function(e){var t=this.acks[e.id];"function"==typeof t&&(t.apply(this,e.data),delete this.acks[e.id])}},{key:"onconnect",value:function(e,t){this.id=e,this.recovered=t&&this._pid===t,this._pid=t,this.connected=!0,this.emitBuffered(),this.emitReserved("connect"),this._drainQueue(!0)}},{key:"emitBuffered",value:function(){var e=this;this.receiveBuffer.forEach((function(t){return e.emitEvent(t)})),this.receiveBuffer=[],this.sendBuffer.forEach((function(t){e.notifyOutgoingListeners(t),e.packet(t)})),this.sendBuffer=[]}},{key:"ondisconnect",value:function(){this.destroy(),this.onclose("io server disconnect")}},{key:"destroy",value:function(){this.subs&&(this.subs.forEach((function(e){return e()})),this.subs=void 0),this.io._destroy(this)}},{key:"disconnect",value:function(){return this.connected&&this.packet({type:fu.DISCONNECT}),this.destroy(),this.connected&&this.onclose("io client disconnect"),this}},{key:"close",value:function(){return this.disconnect()}},{key:"compress",value:function(e){return this.flags.compress=e,this}},{key:"volatile",get:function(){return this.flags.volatile=!0,this}},{key:"timeout",value:function(e){return this.flags.timeout=e,this}},{key:"onAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.push(e),this}},{key:"prependAny",value:function(e){return this._anyListeners=this._anyListeners||[],this._anyListeners.unshift(e),this}},{key:"offAny",value:function(e){if(!this._anyListeners)return this;if(e){for(var t=this._anyListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyListeners=[];return this}},{key:"listenersAny",value:function(){return this._anyListeners||[]}},{key:"onAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.push(e),this}},{key:"prependAnyOutgoing",value:function(e){return this._anyOutgoingListeners=this._anyOutgoingListeners||[],this._anyOutgoingListeners.unshift(e),this}},{key:"offAnyOutgoing",value:function(e){if(!this._anyOutgoingListeners)return this;if(e){for(var t=this._anyOutgoingListeners,n=0;n<t.length;n++)if(e===t[n])return t.splice(n,1),this}else this._anyOutgoingListeners=[];return this}},{key:"listenersAnyOutgoing",value:function(){return this._anyOutgoingListeners||[]}},{key:"notifyOutgoingListeners",value:function(e){if(this._anyOutgoingListeners&&this._anyOutgoingListeners.length){var t,n=be(this._anyOutgoingListeners.slice());try{for(n.s();!(t=n.n()).done;)t.value.apply(this,e.data)}catch(e){n.e(e)}finally{n.f()}}}}]),n}(Sc);function wu(e){this.ms=(e=e||{}).min||100,this.max=e.max||1e4,this.factor=e.factor||2,this.jitter=e.jitter>0&&e.jitter<=1?e.jitter:0,this.attempts=0}wu.prototype.duration=function(){var e=this.ms*Math.pow(this.factor,this.attempts++);if(this.jitter){var t=Math.random(),n=Math.floor(t*this.jitter*e);e=0==(1&Math.floor(10*t))?e-n:e+n}return 0|Math.min(e,this.max)},wu.prototype.reset=function(){this.attempts=0},wu.prototype.setMin=function(e){this.ms=e},wu.prototype.setMax=function(e){this.max=e},wu.prototype.setJitter=function(e){this.jitter=e};var Su=function(e){ne(n,e);var t=ce(n);function n(e,r){var o,a;X(this,n),(o=t.call(this)).nsps={},o.subs=[],e&&"object"===Y(e)&&(r=e,e=void 0),(r=r||{}).path=r.path||"/socket.io",o.opts=r,Cc(le(o),r),o.reconnection(!1!==r.reconnection),o.reconnectionAttempts(r.reconnectionAttempts||Infinity),o.reconnectionDelay(r.reconnectionDelay||1e3),o.reconnectionDelayMax(r.reconnectionDelayMax||5e3),o.randomizationFactor(null!==(a=r.randomizationFactor)&&void 0!==a?a:.5),o.backoff=new wu({min:o.reconnectionDelay(),max:o.reconnectionDelayMax(),jitter:o.randomizationFactor()}),o.timeout(null==r.timeout?2e4:r.timeout),o._readyState="closed",o.uri=e;var i=r.parser||yu;return o.encoder=new i.Encoder,o.decoder=new i.Decoder,o._autoConnect=!1!==r.autoConnect,o._autoConnect&&o.open(),o}return ee(n,[{key:"reconnection",value:function(e){return arguments.length?(this._reconnection=!!e,this):this._reconnection}},{key:"reconnectionAttempts",value:function(e){return void 0===e?this._reconnectionAttempts:(this._reconnectionAttempts=e,this)}},{key:"reconnectionDelay",value:function(e){var t;return void 0===e?this._reconnectionDelay:(this._reconnectionDelay=e,null===(t=this.backoff)||void 0===t||t.setMin(e),this)}},{key:"randomizationFactor",value:function(e){var t;return void 0===e?this._randomizationFactor:(this._randomizationFactor=e,null===(t=this.backoff)||void 0===t||t.setJitter(e),this)}},{key:"reconnectionDelayMax",value:function(e){var t;return void 0===e?this._reconnectionDelayMax:(this._reconnectionDelayMax=e,null===(t=this.backoff)||void 0===t||t.setMax(e),this)}},{key:"timeout",value:function(e){return arguments.length?(this._timeout=e,this):this._timeout}},{key:"maybeReconnectOnOpen",value:function(){!this._reconnecting&&this._reconnection&&0===this.backoff.attempts&&this.reconnect()}},{key:"open",value:function(e){var t=this;if(~this._readyState.indexOf("open"))return this;this.engine=new Qc(this.uri,this.opts);var n=this.engine,r=this;this._readyState="opening",this.skipReconnect=!1;var o=vu(n,"open",(function(){r.onopen(),e&&e()})),a=function(n){t.cleanup(),t._readyState="closed",t.emitReserved("error",n),e?e(n):t.maybeReconnectOnOpen()},i=vu(n,"error",a);if(!1!==this._timeout){var s=this.setTimeoutFn((function(){o(),a(new Error("timeout")),n.close()}),this._timeout);this.opts.autoUnref&&s.unref(),this.subs.push((function(){t.clearTimeoutFn(s)}))}return this.subs.push(o),this.subs.push(i),this}},{key:"connect",value:function(e){return this.open(e)}},{key:"onopen",value:function(){this.cleanup(),this._readyState="open",this.emitReserved("open");var e=this.engine;this.subs.push(vu(e,"ping",this.onping.bind(this)),vu(e,"data",this.ondata.bind(this)),vu(e,"error",this.onerror.bind(this)),vu(e,"close",this.onclose.bind(this)),vu(this.decoder,"decoded",this.ondecoded.bind(this)))}},{key:"onping",value:function(){this.emitReserved("ping")}},{key:"ondata",value:function(e){try{this.decoder.add(e)}catch(e){this.onclose("parse error",e)}}},{key:"ondecoded",value:function(e){var t=this;Gc((function(){t.emitReserved("packet",e)}),this.setTimeoutFn)}},{key:"onerror",value:function(e){this.emitReserved("error",e)}},{key:"socket",value:function(e,t){var n=this.nsps[e];return n?this._autoConnect&&!n.active&&n.connect():(n=new _u(this,e,t),this.nsps[e]=n),n}},{key:"_destroy",value:function(e){for(var t=0,n=Object.keys(this.nsps);t<n.length;t++)if(this.nsps[n[t]].active)return;this._close()}},{key:"_packet",value:function(e){for(var t=this.encoder.encode(e),n=0;n<t.length;n++)this.engine.write(t[n],e.options)}},{key:"cleanup",value:function(){this.subs.forEach((function(e){return e()})),this.subs.length=0,this.decoder.destroy()}},{key:"_close",value:function(){this.skipReconnect=!0,this._reconnecting=!1,this.onclose("forced close"),this.engine&&this.engine.close()}},{key:"disconnect",value:function(){return this._close()}},{key:"onclose",value:function(e,t){this.cleanup(),this.backoff.reset(),this._readyState="closed",this.emitReserved("close",e,t),this._reconnection&&!this.skipReconnect&&this.reconnect()}},{key:"reconnect",value:function(){var e=this;if(this._reconnecting||this.skipReconnect)return this;var t=this;if(this.backoff.attempts>=this._reconnectionAttempts)this.backoff.reset(),this.emitReserved("reconnect_failed"),this._reconnecting=!1;else{var n=this.backoff.duration();this._reconnecting=!0;var r=this.setTimeoutFn((function(){t.skipReconnect||(e.emitReserved("reconnect_attempt",t.backoff.attempts),t.skipReconnect||t.open((function(n){n?(t._reconnecting=!1,t.reconnect(),e.emitReserved("reconnect_error",n)):t.onreconnect()})))}),n);this.opts.autoUnref&&r.unref(),this.subs.push((function(){e.clearTimeoutFn(r)}))}}},{key:"onreconnect",value:function(){var e=this.backoff.attempts;this._reconnecting=!1,this.backoff.reset(),this.emitReserved("reconnect",e)}}]),n}(Sc),xu={};function Eu(e,t){"object"===Y(e)&&(t=e,e=void 0);var n,r=function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:"",n=arguments.length>2?arguments[2]:void 0,r=e;n=n||"undefined"!=typeof location&&location,null==e&&(e=n.protocol+"//"+n.host),"string"==typeof e&&("/"===e.charAt(0)&&(e="/"===e.charAt(1)?n.protocol+e:n.host+e),/^(https?|wss?):\/\//.test(e)||(e=void 0!==n?n.protocol+"//"+e:"https://"+e),r=Xc(e)),r.port||(/^(http|ws)$/.test(r.protocol)?r.port="80":/^(http|ws)s$/.test(r.protocol)&&(r.port="443")),r.path=r.path||"/";var o=-1!==r.host.indexOf(":")?"["+r.host+"]":r.host;return r.id=r.protocol+"://"+o+":"+r.port+t,r.href=r.protocol+"://"+o+(n&&n.port===r.port?"":":"+r.port),r}(e,(t=t||{}).path||"/socket.io"),o=r.source,a=r.id;return t.forceNew||t["force new connection"]||!1===t.multiplex||xu[a]&&r.path in xu[a].nsps?n=new Su(o,t):(xu[a]||(xu[a]=new Su(o,t)),n=xu[a]),r.query&&!t.query&&(t.query=r.queryKey),n.socket(r.path,t)}function ku(){}function Au(){Au.init.call(this)}function Cu(e){return void 0===e._maxListeners?Au.defaultMaxListeners:e._maxListeners}function Ou(e,t,n,r){var o,a,i;if("function"!=typeof n)throw new TypeError('"listener" argument must be a function');if((a=e._events)?(a.newListener&&(e.emit("newListener",t,n.listener?n.listener:n),a=e._events),i=a[t]):(a=e._events=new ku,e._eventsCount=0),i){if("function"==typeof 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a=If(n);a||n.corked||n.bufferProcessing||!n.bufferedRequest||Tf(e,n),r?Et(Rf,e,n,a,o):Rf(e,n,a,o)}}(t,e)},this.writecb=null,this.writelen=0,this.bufferedRequest=null,this.lastBufferedRequest=null,this.pendingcb=0,this.prefinished=!1,this.errorEmitted=!1,this.bufferedRequestCount=0,this.corkedRequestsFree=new Ff(this)}function Of(e){if(!(this instanceof Of||this instanceof qf))return new Of(e);this._writableState=new Cf(e,this),this.writable=!0,e&&("function"==typeof e.write&&(this._write=e.write),"function"==typeof e.writev&&(this._writev=e.writev)),Au.call(this)}function Nf(e,t,n,r,o,a,i){t.writelen=r,t.writecb=i,t.writing=!0,t.sync=!0,n?e._writev(o,t.onwrite):e._write(o,a,t.onwrite),t.sync=!1}function Rf(e,t,n,r){n||function(e,t){0===t.length&&t.needDrain&&(t.needDrain=!1,e.emit("drain"))}(e,t),t.pendingcb--,r(),Mf(e,t)}function Tf(e,t){t.bufferProcessing=!0;var n=t.bufferedRequest;if(e._writev&&n&&n.next){var r=new Array(t.bufferedRequestCount),o=t.corkedRequestsFree;o.entry=n;for(var a=0;n;)r[a]=n,n=n.next,a+=1;Nf(e,t,!0,t.length,r,"",o.finish),t.pendingcb++,t.lastBufferedRequest=null,o.next?(t.corkedRequestsFree=o.next,o.next=null):t.corkedRequestsFree=new Ff(t)}else{for(;n;){var i=n.chunk;if(Nf(e,t,!1,t.objectMode?1:i.length,i,n.encoding,n.callback),n=n.next,t.writing)break}null===n&&(t.lastBufferedRequest=null)}t.bufferedRequestCount=0,t.bufferedRequest=n,t.bufferProcessing=!1}function If(e){return e.ending&&0===e.length&&null===e.bufferedRequest&&!e.finished&&!e.writing}function Pf(e,t){t.prefinished||(t.prefinished=!0,e.emit("prefinish"))}function Mf(e,t){var n=If(t);return n&&(0===t.pendingcb?(Pf(e,t),t.finished=!0,e.emit("finish")):Pf(e,t)),n}function Ff(e){var t=this;this.next=null,this.entry=null,this.finish=function(n){var r=t.entry;for(t.entry=null;r;){var o=r.callback;e.pendingcb--,o(n),r=r.next}e.corkedRequestsFree?e.corkedRequestsFree.next=t:e.corkedRequestsFree=t}}ff.prototype.read=function(e){cf("read",e),e=parseInt(e,10);var t=this._readableState,n=e;if(0!==e&&(t.emittedReadable=!1),0===e&&t.needReadable&&(t.length>=t.highWaterMark||t.ended))return cf("read: emitReadable",t.length,t.ended),0===t.length&&t.ended?Sf(this):mf(this),null;if(0===(e=hf(e,t))&&t.ended)return 0===t.length&&Sf(this),null;var r,o=t.needReadable;return cf("need readable",o),(0===t.length||t.length-e<t.highWaterMark)&&cf("length less than watermark",o=!0),t.ended||t.reading?cf("reading or ended",o=!1):o&&(cf("do read"),t.reading=!0,t.sync=!0,0===t.length&&(t.needReadable=!0),this._read(t.highWaterMark),t.sync=!1,t.reading||(e=hf(n,t))),null===(r=e>0?wf(e,t):null)?(t.needReadable=!0,e=0):t.length-=e,0===t.length&&(t.ended||(t.needReadable=!0),n!==e&&t.ended&&Sf(this)),null!==r&&this.emit("data",r),r},ff.prototype._read=function(e){this.emit("error",new 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e&&e!==t.pipes||(e||(e=t.pipes),t.pipes=null,t.pipesCount=0,t.flowing=!1,e&&e.emit("unpipe",this)),this;if(!e){var n=t.pipes,r=t.pipesCount;t.pipes=null,t.pipesCount=0,t.flowing=!1;for(var o=0;o<r;o++)n[o].emit("unpipe",this);return this}var a=Ef(t.pipes,e);return-1===a||(t.pipes.splice(a,1),t.pipesCount-=1,1===t.pipesCount&&(t.pipes=t.pipes[0]),e.emit("unpipe",this)),this},ff.prototype.addListener=ff.prototype.on=function(e,t){var n=Au.prototype.on.call(this,e,t);if("data"===e)!1!==this._readableState.flowing&&this.resume();else if("readable"===e){var r=this._readableState;r.endEmitted||r.readableListening||(r.readableListening=r.needReadable=!0,r.emittedReadable=!1,r.reading?r.length&&mf(this):Et(vf,this))}return n},ff.prototype.resume=function(){var e=this._readableState;return e.flowing||(cf("resume"),e.flowing=!0,function(e,t){t.resumeScheduled||(t.resumeScheduled=!0,Et(bf,e,t))}(this,e)),this},ff.prototype.pause=function(){return cf("call pause 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Af(n,r,o),s?s.next=t.lastBufferedRequest:t.bufferedRequest=t.lastBufferedRequest,t.bufferedRequestCount+=1}else Nf(e,t,!1,a,n,r,o);return i}(this,r,e,t,n)),o},Of.prototype.cork=function(){this._writableState.corked++},Of.prototype.uncork=function(){var e=this._writableState;e.corked&&(e.corked--,e.writing||e.corked||e.finished||e.bufferProcessing||!e.bufferedRequest||Tf(this,e))},Of.prototype.setDefaultEncoding=function(e){if("string"==typeof e&&(e=e.toLowerCase()),!(["hex","utf8","utf-8","ascii","binary","base64","ucs2","ucs-2","utf16le","utf-16le","raw"].indexOf((e+"").toLowerCase())>-1))throw new TypeError("Unknown encoding: "+e);return this._writableState.defaultEncoding=e,this},Of.prototype._write=function(e,t,n){n(new Error("not implemented"))},Of.prototype._writev=null,Of.prototype.end=function(e,t,n){var r=this._writableState;"function"==typeof e?(n=e,e=null,t=null):"function"==typeof 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".concat(JSON.stringify(this._underConstructionOrphans)))}},{key:"_bufferLine",value:function(e){var t,n,r,o=this,a=V(V({},Xf(e)),{},{child_features:[],derived_features:[]}),i=(null===(t=a.attributes)||void 0===t?void 0:t.ID)||[],s=(null===(n=a.attributes)||void 0===n?void 0:n.Parent)||[],l=(null===(r=a.attributes)||void 0===r?void 0:r.Derives_from)||[];if(i.length||s.length||l.length){var c=void 0;i.forEach((function(e){var t=o._underConstructionById[e];t?(t[t.length-1].type!==a.type&&o._parseError('multi-line feature "'.concat(e,'" has inconsistent types: "').concat(a.type,'", "').concat(t[t.length-1].type,'"')),t.push(a),c=t):(c=[a],o._enforceBufferSizeLimit(1),s.length||l.length||o._underConstructionTopLevel.push(c),o._underConstructionById[e]=c,o._resolveReferencesTo(c,e))})),this._resolveReferencesFrom(c||[a],{Parent:s,Derives_from:l},i)}else this._emitItem([a])}},{key:"_resolveReferencesTo",value:function(e,t){var n=this._underConstructionOrphans[t];n&&(e.forEach((function(e){var t;(t=e.child_features).push.apply(t,pe(n.Parent))})),e.forEach((function(e){var t;(t=e.derived_features).push.apply(t,pe(n.Derives_from))})),delete this._underConstructionOrphans[t])}},{key:"_parseError",value:function(e){this.eof=!0,this.errorCallback("".concat(this.lineNumber,": ").concat(e))}},{key:"_resolveReferencesFrom",value:function(e,t,n){var r=this;function o(e,t,n){var r=e[t];r||(e[t]=r={});var o=r[n]||!1;return r[n]=!0,o}t.Parent.forEach((function(t){var a=r._underConstructionById[t];if(a)n.filter((function(e){return o(r._completedReferences,e,"Parent,".concat(t))})).length||a.forEach((function(t){t.child_features.push(e)}));else{var i=r._underConstructionOrphans[t];i||(r._underConstructionOrphans[t]=i={Parent:[],Derives_from:[]}),i.Parent.push(e)}})),t.Derives_from.forEach((function(t){var a=r._underConstructionById[t];if(a)n.filter((function(e){return 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r;if(!this.haveWeEmittedData&&this.insertVersionDirective){var o=Array.isArray(e)?e[0]:e;"directive"in o&&"gff-version"!==o.directive&&this.push("##gff-version 3\n")}if("sequence"in e&&!this.fastaMode&&(this.push("##FASTA\n"),this.fastaMode=!0),r=Array.isArray(e)?e.map(sd).join(""):sd(e),this.push(r),this.linesSinceLastSyncMark>=this.minLinesBetweenSyncMarks)this.push("###\n"),this.linesSinceLastSyncMark=0;else{for(var a=0,i=0;i<r.length;i+=1)"\n"===r[i]&&(a+=1);this.linesSinceLastSyncMark+=a}this.haveWeEmittedData=!0,fd(n)}}]),n}(Hf),md={parseStream:function(){return new pd(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},parseStringSync:function(e){if(!e)return[];var t=dd(arguments.length>1&&void 0!==arguments[1]?arguments[1]:{}),n=[],r=n.push.bind(n),o=new ud({featureCallback:t.parseFeatures?r:void 0,directiveCallback:t.parseDirectives?r:void 0,commentCallback:t.parseComments?r:void 0,sequenceCallback:t.parseSequences?r:void 0,bufferSize:Infinity,errorCallback:function(e){throw e}});return e.split(/\r?\n/).forEach(o.addLine.bind(o)),o.finish(),n},formatSync:function(e){var t=[],n=[];e.forEach((function(e){"sequence"in e?n.push(e):t.push(e)}));var r=t.map(sd).join("");return n.length&&(r+="##FASTA\n",r+=n.map(id).join("")),r},formatStream:function(){return new hd(arguments.length>0&&void 0!==arguments[0]?arguments[0]:{})},formatFile:function(e,t){var n=V({insertVersionDirective:!0},arguments.length>2&&void 0!==arguments[2]?arguments[2]:{});return new Promise((function(r,o){e.pipe(new hd(n)).on("end",(function(){return r(null)})).on("error",o).pipe(t)}))},util:ld};async function gd(e,t,n){const r=md.parseStringSync(t,{parseSequences:!0,parseComments:!0,parseDirectives:!1,parseFeatures:!0});if(0===r.length)throw new Error("No features found in GFF3 file");let o=0,a=n.assemblies.get(e);a||(a=n.addAssembly(e,"InMemoryFileDriver"));for(const e of r)if(Array.isArray(e)){const t=er.gff3ToAnnotationFeature(e),n=a.refSeqs.get(t.refSeq)??a.addRefSeq(t.refSeq,t.refSeq);n.features.has(t._id)||n.addFeature(t)}else if("comment"in e)a.addComment(e.comment);else{o++;let t=a.refSeqs.get(e.id);t||(t=a.addRefSeq(e.id,e.id,e.description)),e.description&&!t.description&&t.setDescription(e.description),t.addSequence({start:0,stop:e.sequence.length,sequence:e.sequence})}if(0===o)throw new Error("No embedded FASTA section found in GFF3");const i=await yd(a);return n.addCheckResults(i),a}async function yd(e){const t=[];for(const n of e.refSeqs.values())for(const e of n.features.values())for(const r of B.checkRegistry.getChecks().values()){const o=await r.checkFeature(l.getSnapshot(e),((e,t)=>Promise.resolve(n.getSequence(e,t))));t.push(...o)}return t}function vd(e){const{attributes:t}=e,n=t.get("gff_name");return n?n[0]:""}function bd(e){const{attributes:t}=e,n=t.get("gff_id"),r=t.get("transcript_id"),o=t.get("exon_id"),a=t.get("protein_id");return 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0;Rd=Od.default=(0,Nd(Xl).default)((0,N.default.jsx)("path",{d:"M12 7c-2.76 0-5 2.24-5 5s2.24 5 5 5 5-2.24 5-5-2.24-5-5-5zm0-5C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm0 18c-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8-3.58 8-8 8z"}),"RadioButtonChecked");var Td={},Id=Zl.exports;Object.defineProperty(Td,"__esModule",{value:!0});var Pd=Td.default=void 0;Pd=Td.default=(0,Id(Xl).default)((0,N.default.jsx)("path",{d:"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm0 18c-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8-3.58 8-8 8z"}),"RadioButtonUnchecked");var Md={},Fd=Zl.exports;Object.defineProperty(Md,"__esModule",{value:!0});var jd=Md.default=void 0;jd=Md.default=(0,Fd(Xl).default)((0,N.default.jsx)("path",{d:"M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"}),"Close");const Dd=f.makeStyles()((e=>({dialogTitle:{background:e.palette.primary.main,color:e.palette.primary.contrastText,padding:e.spacing(2)},closeButton:{position:"absolute",right:e.spacing(1),top:e.spacing(1.5),color:e.palette.primary.contrastText}}))),Ld=p.observer((function(e){const{classes:t}=Dd(),{handleClose:n,title:r,...o}=e;return T.default.createElement(d.Dialog,{...o,header:T.default.createElement(T.default.Fragment,null,T.default.createElement(c.DialogTitle,{className:t.dialogTitle},r),T.default.createElement(c.IconButton,{"aria-label":"close",onClick:n,className:t.closeButton},T.default.createElement(jd,null)))})}));var qd;!function(e){e.GFF3="text/x-gff3",e.FASTA="text/x-fasta",e.BGZIP_FASTA="application/x-bgzip-fasta",e.FAI="text/x-fai",e.GZI="application/x-gzi",e.EXTERNAL="text/x-external"}(qd||(qd={}));const Bd=f.makeStyles()((e=>({accordion:{border:`1px solid ${e.palette.divider}`,"&:not(:last-child)":{borderBottom:0}},accordionSummary:{flexDirection:"row-reverse"},accordionDetails:{padding:e.spacing(2),borderTop:"1px solid rgba(0, 0, 0, .125)"},radioIcon:{color:e?.palette?.tertiary?.contrastText},dialog:{minWidth:550,maxWidth:800}})));function Ud(e,t,n,r,o,a,i,s,l){return!(!e||!(t&&r||n===qd.GFF3&&r||r&&o&&a||i&&s&&l))}function zd({changeManager:e,handleClose:t,session:n}){const{classes:o}=Bd(),{internetAccounts:a}=l.getRoot(n),{notify:i}=n,s=a.filter((e=>"ApolloInternetAccount"===e.type));if(0===s.length)throw new Error("No Apollo internet account found");const[f,d]=u.useState(""),[p,h]=u.useState(""),[m,g]=u.useState(!1),[y,v]=u.useState(qd.BGZIP_FASTA),[b,_]=u.useState(!0),[w,S]=u.useState(!1),[x,E]=u.useState(!1),[k,A]=u.useState(null),[C,O]=u.useState(null),[N,R]=u.useState(null),[I,P]=u.useState(""),[M,F]=u.useState(""),[j,D]=u.useState(""),[L,q]=u.useState(!1),[B,U]=u.useState(!1);async function z(e,t){const{jobsManager:r}=n,o=new AbortController,[{baseURL:a,getFetcher:i}]=s,l=new URL("files",a);l.searchParams.set("type",t);const c=l.href,u=new FormData;let d=e.name;t===qd.FAI||t===qd.GZI?d=`${d}.txt`:B&&!e.name.toLocaleLowerCase().endsWith(".gz")?d=`${d}.gz`:!B&&e.name.toLocaleLowerCase().endsWith(".gz")&&(d=`${d}.txt`),u.append("file",e,d),u.append("type",t);const p=i({locationType:"UriLocation",uri:c});if(p){const t={name:`UploadAssemblyFile for ${f}`,statusMessage:"Pre-validating",progressPct:0,cancelCallback:()=>{o.abort(),r.abortJob(t.name)}};r.runJob(t),r.update(t.name,`Uploading ${e.name}, this may take awhile`);const{signal:n}=o,a=await p(c,{method:"POST",body:u,signal:n});if(!a.ok){const e=await wd(a,"Error when inserting new assembly (while uploading file)");return r.abortJob(t.name,e),h(e),""}const i=(await a.json())._id;return r.done(t),i}throw new Error("Failed to 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34:this.$=i[l]}},table:[{3:1,4:[1,2],6:3,13:4,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{1:[3]},{1:[2,1],5:10,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,3],5:21,7:11,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,12],12:[2,12],14:[2,12],22:[2,12]},{1:[2,14],12:[2,14],14:[2,14],22:[2,14]},{1:[2,15],12:[2,15],14:[2,15],22:[2,15]},{1:[2,16],12:[2,16],14:[2,16],22:[2,16]},{1:[2,17],12:[2,17],14:[2,17],22:[2,17]},{1:[2,18],12:[2,18],14:[2,18],22:[2,18]},{1:[2,2],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,5],12:[2,5],14:[2,5],22:[2,5]},{1:[2,7],12:[2,7],14:[2,7],22:[2,7]},{1:[2,8],12:[2,8],14:[2,8],22:[2,8]},{1:[2,9],12:[2,9],14:[2,9],22:[2,9]},{1:[2,10],12:[2,10],14:[2,10],22:[2,10]},{1:[2,19],12:[2,19],14:[2,19],22:[2,19]},{1:[2,20],12:[2,20],14:[2,20],22:[2,20]},{13:23,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9]},{13:24,15:[1,5],16:[1,6],17:[1,7],18:[1,8],19:[1,9],22:[1,25]},{15:[1,29],17:[1,30],18:[1,33],23:26,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{1:[2,4],7:22,8:12,9:13,10:14,11:15,12:[1,18],14:[1,19],20:16,21:17,22:[1,20]},{1:[2,6],12:[2,6],14:[2,6],22:[2,6]},{1:[2,11],12:[2,11],14:[2,11],22:[2,11]},{1:[2,13],12:[2,13],14:[2,13],22:[2,13]},{15:[1,29],17:[1,30],18:[1,33],23:38,25:27,26:28,27:32,29:34,30:[1,35],31:[1,31],32:[1,36],33:[1,37]},{24:[1,39]},{24:[2,23]},{24:[2,24],28:[1,40]},{24:[2,30]},{24:[2,31]},{24:[2,32]},{24:[2,25],28:[2,25]},{24:[2,27],28:[2,27]},{24:[2,28],28:[2,28]},{24:[2,29],28:[2,29]},{24:[2,33],28:[2,33]},{24:[2,34],28:[2,34]},{24:[1,41]},{1:[2,21],12:[2,21],14:[2,21],22:[2,21]},{18:[1,33],27:42,29:34,30:[1,35],32:[1,36],33:[1,37]},{1:[2,22],12:[2,22],14:[2,22],22:[2,22]},{24:[2,26],28:[2,26]}],defaultActions:{27:[2,23],29:[2,30],30:[2,31],31:[2,32]},parseError:function(e,t){if(!t.recoverable)throw new Error(e);this.trace(e)},parse:function(e){var t=this,n=[0],r=[null],o=[],a=this.table,i="",s=0,l=0,c=o.slice.call(arguments,1);this.lexer.setInput(e),this.lexer.yy=this.yy,this.yy.lexer=this.lexer,this.yy.parser=this,void 0===this.lexer.yylloc&&(this.lexer.yylloc={});var u=this.lexer.yylloc;o.push(u);var f=this.lexer.options&&this.lexer.options.ranges;function d(){var e;return"number"!=typeof(e=t.lexer.lex()||1)&&(e=t.symbols_[e]||e),e}this.parseError="function"==typeof this.yy.parseError?this.yy.parseError:Object.getPrototypeOf(this).parseError;for(var p,h,m,g,y,v,b,_={};;){if(this.defaultActions[h=n[n.length-1]]?m=this.defaultActions[h]:(null==p&&(p=d()),m=a[h]&&a[h][p]),void 0===m||!m.length||!m[0]){var w;for(y in b=[],a[h])this.terminals_[y]&&y>2&&b.push("'"+this.terminals_[y]+"'");w=this.lexer.showPosition?"Parse error on line "+(s+1)+":\n"+this.lexer.showPosition()+"\nExpecting "+b.join(", ")+", got '"+(this.terminals_[p]||p)+"'":"Parse error on line "+(s+1)+": Unexpected "+(1==p?"end of input":"'"+(this.terminals_[p]||p)+"'"),this.parseError(w,{text:this.lexer.match,token:this.terminals_[p]||p,line:this.lexer.yylineno,loc:u,expected:b})}if(m[0]instanceof Array&&m.length>1)throw new Error("Parse Error: multiple actions possible at state: "+h+", token: "+p);switch(m[0]){case 1:n.push(p),r.push(this.lexer.yytext),o.push(this.lexer.yylloc),n.push(m[1]),p=null,l=this.lexer.yyleng,i=this.lexer.yytext,s=this.lexer.yylineno,u=this.lexer.yylloc;break;case 2:if(_.$=r[r.length-(v=this.productions_[m[1]][1])],_._$={first_line:o[o.length-(v||1)].first_line,last_line:o[o.length-1].last_line,first_column:o[o.length-(v||1)].first_column,last_column:o[o.length-1].last_column},f&&(_._$.range=[o[o.length-(v||1)].range[0],o[o.length-1].range[1]]),void 0!==(g=this.performAction.apply(_,[i,l,s,this.yy,m[1],r,o].concat(c))))return g;v&&(n=n.slice(0,-1*v*2),r=r.slice(0,-1*v),o=o.slice(0,-1*v)),n.push(this.productions_[m[1]][0]),r.push(_.$),o.push(_._$),n.push(a[n[n.length-2]][n[n.length-1]]);break;case 3:return!0}}return!0}},t={initialize:function(){this._nodes=[],this._node={},this._stash=[]},set:function(e){for(var t in e)this._node[t]=e[t];return this._node},node:function(e){return arguments.length&&(this._node=e),this._node},push:function(){this._nodes.push(this._node),this._node={}},unshift:function(){this._nodes.unshift(this._node),this._node={}},yield:function(){var e=this._nodes;return this.initialize(),e}},n=function(){var e={EOF:1,parseError:function(e,t){if(!this.yy.parser)throw new Error(e);this.yy.parser.parseError(e,t)},setInput:function(e){return this._input=e,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var e=this._input[0];return this.yytext+=e,this.yyleng++,this.offset++,this.match+=e,this.matched+=e,e.match(/(?:\r\n?|\n).*/g)?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),e},unput:function(e){var t=e.length,n=e.split(/(?:\r\n?|\n)/g);this._input=e+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-t-1),this.offset-=t;var r=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),n.length-1&&(this.yylineno-=n.length-1);var o=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:n?(n.length===r.length?this.yylloc.first_column:0)+r[r.length-n.length].length-n[0].length:this.yylloc.first_column-t},this.options.ranges&&(this.yylloc.range=[o[0],o[0]+this.yyleng-t]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(e){this.unput(this.match.slice(e))},pastInput:function(){var e=this.matched.substr(0,this.matched.length-this.match.length);return(e.length>20?"...":"")+e.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var e=this.match;return e.length<20&&(e+=this._input.substr(0,20-e.length)),(e.substr(0,20)+(e.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var e=this.pastInput(),t=new Array(e.length+1).join("-");return e+this.upcomingInput()+"\n"+t+"^"},test_match:function(e,t){var n,r,o;if(this.options.backtrack_lexer&&(o={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(o.yylloc.range=this.yylloc.range.slice(0))),(r=e[0].match(/(?:\r\n?|\n).*/g))&&(this.yylineno+=r.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:r?r[r.length-1].length-r[r.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+e[0].length},this.yytext+=e[0],this.match+=e[0],this.matches=e,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(e[0].length),this.matched+=e[0],n=this.performAction.call(this,this.yy,this,t,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),n)return n;if(this._backtrack){for(var a in o)this[a]=o[a];return!1}return!1},next:function(){if(this.done)return this.EOF;var e,t,n,r;this._input||(this.done=!0),this._more||(this.yytext="",this.match="");for(var o=this._currentRules(),a=0;a<o.length;a++)if((n=this._input.match(this.rules[o[a]]))&&(!t||n[0].length>t[0].length)){if(t=n,r=a,this.options.backtrack_lexer){if(!1!==(e=this.test_match(n,o[a])))return e;if(this._backtrack){t=!1;continue}return!1}if(!this.options.flex)break}return t?!1!==(e=this.test_match(t,o[r]))&&e:""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){return this.next()||this.lex()},begin:function(e){this.conditionStack.push(e)},popState:function(){return this.conditionStack.length-1>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(e){return(e=this.conditionStack.length-1-Math.abs(e||0))>=0?this.conditionStack[e]:"INITIAL"},pushState:function(e){this.begin(e)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(e,t,n,r){switch(n){case 0:return 4;case 1:return 14;case 2:return 12;case 3:return 15;case 4:return 16;case 5:return 22;case 6:return 24;case 7:return 28;case 8:return 30;case 9:return 18;case 10:return t.yytext=t.yytext.substr(1,t.yyleng-2),32;case 11:return t.yytext=t.yytext.substr(1,t.yyleng-2),33;case 12:return 17;case 13:return 31}},rules:[/^(?:\$)/,/^(?:\.\.)/,/^(?:\.)/,/^(?:\*)/,/^(?:[a-zA-Z_]+[a-zA-Z0-9_]*)/,/^(?:\[)/,/^(?:\])/,/^(?:,)/,/^(?:((-?(?:0|[1-9][0-9]*)))?\:((-?(?:0|[1-9][0-9]*)))?(\:((-?(?:0|[1-9][0-9]*)))?)?)/,/^(?:(-?(?:0|[1-9][0-9]*)))/,/^(?:"(?:\\["bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^"\\])*")/,/^(?:'(?:\\['bfnrt/\\]|\\u[a-fA-F0-9]{4}|[^'\\])*')/,/^(?:\(.+?\)(?=\]))/,/^(?:\?\(.+?\)(?=\]))/],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6,7,8,9,10,11,12,13],inclusive:!0}}};return e}();function r(){this.yy={}}return e.lexer=n,r.prototype=e,e.Parser=r,new r}();void 0!==e&&void 0!==n&&(n.parser=o,n.Parser=o.Parser,n.parse=function(){return o.parse.apply(o,arguments)},n.main=function(t){t[1]||(console.log("Usage: "+t[0]+" FILE"),r.exit(1));var o=e("fs").readFileSync(e("path").normalize(t[1]),"utf8");return n.parser.parse(o)},void 0!==t&&e.main===t&&n.main(r.argv.slice(1)))}).call(this,e("_process"))},{_process:14,fs:12,path:13}],2:[function(e,t,n){t.exports={identifier:"[a-zA-Z_]+[a-zA-Z0-9_]*",integer:"-?(?:0|[1-9][0-9]*)",qq_string:'"(?:\\\\["bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^"\\\\])*"',q_string:"'(?:\\\\['bfnrt/\\\\]|\\\\u[a-fA-F0-9]{4}|[^'\\\\])*'"}},{}],3:[function(e,t,n){var r=e("./dict"),o=e("fs"),a={lex:{macros:{esc:"\\\\",int:r.integer},rules:[["\\$","return 'DOLLAR'"],["\\.\\.","return 'DOT_DOT'"],["\\.","return 'DOT'"],["\\*","return 'STAR'"],[r.identifier,"return 'IDENTIFIER'"],["\\[","return '['"],["\\]","return ']'"],[",","return ','"],["({int})?\\:({int})?(\\:({int})?)?","return 'ARRAY_SLICE'"],["{int}","return 'INTEGER'"],[r.qq_string,"yytext = yytext.substr(1,yyleng-2); return 'QQ_STRING';"],[r.q_string,"yytext = yytext.substr(1,yyleng-2); return 'Q_STRING';"],["\\(.+?\\)(?=\\])","return 'SCRIPT_EXPRESSION'"],["\\?\\(.+?\\)(?=\\])","return 'FILTER_EXPRESSION'"]]},start:"JSON_PATH",bnf:{JSON_PATH:[["DOLLAR",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["DOLLAR PATH_COMPONENTS",'yy.ast.set({ expression: { type: "root", value: $1 } }); yy.ast.unshift(); return yy.ast.yield()'],["LEADING_CHILD_MEMBER_EXPRESSION","yy.ast.unshift(); return yy.ast.yield()"],["LEADING_CHILD_MEMBER_EXPRESSION PATH_COMPONENTS",'yy.ast.set({ operation: "member", scope: "child", expression: { type: "identifier", value: $1 }}); yy.ast.unshift(); return yy.ast.yield()']],PATH_COMPONENTS:[["PATH_COMPONENT",""],["PATH_COMPONENTS PATH_COMPONENT",""]],PATH_COMPONENT:[["MEMBER_COMPONENT",'yy.ast.set({ operation: "member" }); yy.ast.push()'],["SUBSCRIPT_COMPONENT",'yy.ast.set({ operation: "subscript" }); yy.ast.push() ']],MEMBER_COMPONENT:[["CHILD_MEMBER_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_MEMBER_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_MEMBER_COMPONENT:[["DOT MEMBER_EXPRESSION",""]],LEADING_CHILD_MEMBER_EXPRESSION:[["MEMBER_EXPRESSION",'yy.ast.set({ scope: "child", operation: "member" })']],DESCENDANT_MEMBER_COMPONENT:[["DOT_DOT MEMBER_EXPRESSION",""]],MEMBER_EXPRESSION:[["STAR",'yy.ast.set({ expression: { type: "wildcard", value: $1 } })'],["IDENTIFIER",'yy.ast.set({ expression: { type: "identifier", value: $1 } })'],["SCRIPT_EXPRESSION",'yy.ast.set({ expression: { type: "script_expression", value: $1 } })'],["INTEGER",'yy.ast.set({ expression: { type: "numeric_literal", value: parseInt($1) } })'],["END",""]],SUBSCRIPT_COMPONENT:[["CHILD_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "child" })'],["DESCENDANT_SUBSCRIPT_COMPONENT",'yy.ast.set({ scope: "descendant" })']],CHILD_SUBSCRIPT_COMPONENT:[["[ SUBSCRIPT ]",""]],DESCENDANT_SUBSCRIPT_COMPONENT:[["DOT_DOT [ SUBSCRIPT ]",""]],SUBSCRIPT:[["SUBSCRIPT_EXPRESSION",""],["SUBSCRIPT_EXPRESSION_LIST",'$1.length > 1? yy.ast.set({ expression: { type: "union", value: $1 } }) : $$ = $1']],SUBSCRIPT_EXPRESSION_LIST:[["SUBSCRIPT_EXPRESSION_LISTABLE","$$ = [$1]"],["SUBSCRIPT_EXPRESSION_LIST , SUBSCRIPT_EXPRESSION_LISTABLE","$$ = $1.concat($3)"]],SUBSCRIPT_EXPRESSION_LISTABLE:[["INTEGER",'$$ = { expression: { type: "numeric_literal", value: parseInt($1) } }; yy.ast.set($$)'],["STRING_LITERAL",'$$ = { expression: { type: "string_literal", value: $1 } }; yy.ast.set($$)'],["ARRAY_SLICE",'$$ = { expression: { type: "slice", value: $1 } }; yy.ast.set($$)']],SUBSCRIPT_EXPRESSION:[["STAR",'$$ = { expression: { type: "wildcard", value: $1 } }; yy.ast.set($$)'],["SCRIPT_EXPRESSION",'$$ = { expression: { type: "script_expression", value: $1 } }; yy.ast.set($$)'],["FILTER_EXPRESSION",'$$ = { expression: { type: "filter_expression", value: $1 } }; yy.ast.set($$)']],STRING_LITERAL:[["QQ_STRING","$$ = $1"],["Q_STRING","$$ = $1"]]}};o.readFileSync&&(a.moduleInclude=o.readFileSync(e.resolve("../include/module.js")),a.actionInclude=o.readFileSync(e.resolve("../include/action.js"))),t.exports=a},{"./dict":2,fs:12}],4:[function(e,t,n){var r=e("./aesprim"),o=e("./slice"),a=e("static-eval"),i=e("underscore").uniq,s=function(){return this.initialize.apply(this,arguments)};function l(t,n,o){var a=e("./index"),i=p(r.parse(n).body[0].expression,{"@":t.value}),s=o.replace(/\{\{\s*value\s*\}\}/g,i),l=a.nodes(t.value,s);return l.forEach((function(e){e.path=t.path.concat(e.path.slice(1))})),l}function c(e){return Array.isArray(e)}function u(e){return function(t,n,r,o){var a=t.value,i=t.path,s=[],l=function(t,a){var i;c(t)?(t.forEach((function(e,t){s.length>=o||r(t,e,n)&&s.push({path:a.concat(t),value:e})})),t.forEach((function(t,n){s.length>=o||e&&l(t,a.concat(n))}))):(i=t)&&!(i instanceof Array)&&i instanceof 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T.default.createElement(Ld,{open:!0,title:"Export GFF3",handleClose:e,maxWidth:!1,"data-testid":"download-gff3"},T.default.createElement("form",{onSubmit:async function(o){if(o.preventDefault(),i(""),!n)return void i("Must select assembly to download");const{internetAccountConfigId:a}=r.getConf(n,["sequence","metadata"]);a?await async function(e){if(!n)return void i("Must select assembly to download");const t=f(n.configuration.name,e),r=new URL("export/getID",t.baseURL),o=new URLSearchParams({assembly:n.name});r.search=o.toString();const a=r.toString(),s=t.getFetcher({locationType:"UriLocation",uri:a}),l=await s(a,{method:"GET"});if(!l.ok){const e=await wd(l,"Error when exporting ID");return void i(e)}const{exportID:c}=await l.json(),u=new URL("export",t.baseURL),d=new URLSearchParams({exportID:c,includeFASTA:"true"});u.search=d.toString();const p=u.toString();window.open(p,"_blank")}(a):function(e){if(!n)return void i("Must select assembly to 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Error("ignore")}catch{console.error("Broadcasting user location failed")}}(t)}),300)}})()}))).actions((e=>({initialize:l.flow((function*(t){if("admin"===t){const t=l.getRoot(e);n.isAbstractMenuManager(t)&&function(e){e.appendToMenu("Apollo",{label:"Add Assembly",onClick:e=>{e.queueDialog((t=>[zd,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}}),e.appendToMenu("Apollo",{label:"Delete Assembly",onClick:e=>{e.queueDialog((t=>[QN,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}}),e.appendToMenu("Apollo",{label:"Import Features",onClick:e=>{e.queueDialog((t=>[rR,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}}),e.appendToMenu("Apollo",{label:"Add reference sequence aliases",onClick:e=>{e.queueDialog((t=>[gR,{session:e,handleClose:()=>{t()},changeManager:e.apolloDataStore.changeManager}]))}}),e.appendToMenu("Apollo",{label:"Manage 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r=(e.lgv.bpToPx({refName:a.refName,coord:a.start+i,regionNumber:t})?.offsetPx??0)-e.lgv.offsetPx,l=1/e.lgv.bpPerPx,c=e.lgv.displayedRegions[t].reversed?r-l:r;o.beginPath(),o.fillStyle=eF(s,e.theme),o.rect(c,3*e.sequenceRowHeight,l,e.sequenceRowHeight),o.fill(),e.lgv.bpPerPx<=.1&&(o.stroke(),tF(o,c,l,s,3*e.sequenceRowHeight));const u=n.revcom(s);o.beginPath(),o.fillStyle=eF(u,e.theme),o.rect(c,4*e.sequenceRowHeight,l,e.sequenceRowHeight),o.fill(),e.lgv.bpPerPx<=.1&&(o.stroke(),tF(o,c,l,u,4*e.sequenceRowHeight))}for(let t=0;t<=2;t++)(a.start+i)%3===t&&nF(o,e.lgv.bpPerPx,u,e.sequenceRowHeight*((e.lgv.bpPerPx<=1?5:3)+t),r,e.sequenceRowHeight,c,i,!0,e.showStartCodons,e.showStopCodons,e.highContrast)}}}),{name:"LinearApolloDisplayRenderSequence"}))}})))}(0,t).actions((e=>({afterAttach(){l.addDisposer(e,s.autorun((()=>{const{canvas:t,featureLayouts:r,featuresHeight:o,lgv:a}=e;if(!a.initialized||e.regionCannotBeRendered())return;const{displayedRegions:i,dynamicBlocks:s}=a,l=t?.getContext("2d");if(l){l.clearRect(0,0,s.totalWidthPx,o);for(const[t,o]of r.entries()){const r=i[t];for(const[a,i]of o.entries())for(const[o,s]of i){const i=e.getAnnotationFeatureById(s);o>0||!i||n.doesIntersect2(r.start,r.end,i.min,i.max)&&e.getGlyph(i).draw(l,i,a,e,t)}}}}),{name:"LinearApolloDisplayRenderFeatures"}))}})))}(0,t);return a.named("LinearApolloDisplayMouseEvents").volatile((()=>({apolloDragging:null,cursor:void 0,apolloHover:void 0}))).views((e=>({getMousePosition(t){const n=function(e,t){const n=e.currentTarget,{clientX:r,clientY:o}=e,{left:a,top:i}=n.getBoundingClientRect(),s=r-a,l=o-i,{coord:c,index:u,refName:f}=t.pxToBp(s);return{x:s,y:l,refName:f,bp:c,regionNumber:u}}(t,e.lgv),{bp:r,regionNumber:o,y:a}=n,i=Math.floor(a/e.apolloRowHeight),s=e.featureLayouts[o].get(i);if(!s)return n;const l=s.find((t=>{const n=e.getAnnotationFeatureById(t[1]);return n&&r>=n.min&&r<=n.max}));if(!l)return n;const[c,u]=l,f=e.getAnnotationFeatureById(u);if(!f)return n;const d=e.getGlyph(f),{featureTypeOntology:p}=e.session.apolloDataStore.ontologyManager;if(!p)throw new Error("featureTypeOntology is undefined");const h=d.getFeatureFromLayout(f,r,c,p);return h?{...n,featureAndGlyphUnderMouse:{feature:h,topLevelFeature:f,glyph:d}}:n}}))).actions((e=>({continueDrag(t,n){if(!e.apolloDragging)throw new Error("continueDrag() called with no current drag in 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s=oF(n.getFrame(a.min,a.max,c.strand??1,a.phase),o.bpPerPx),u=(o.bpToPx({refName:r.refName,coord:a.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,f=(a.max-a.min)/o.bpPerPx;iF(t,l,o.displayedRegions[e].reversed?u-f:u,i,s,f)}}else{const n=aF(c.strand,o.bpPerPx),a=(o.bpToPx({refName:r.refName,coord:c.min,regionNumber:e})?.offsetPx??0)-o.offsetPx,s=c.length/o.bpPerPx;iF(t,l,o.displayedRegions[e].reversed?a-s:a,i,n,s)}}),{name:"LinearApolloDisplayRenderSeqHighlight"}))}})))}(0,t);return a.views((e=>({contextMenuItems(t){const{apolloHover:n}=e;if(!n||!t)return[];const{topLevelFeature:r}=n;return e.getGlyph(r).getContextMenuItems(e)}}))).actions((e=>({startDrag(t,n,r){e.apolloDragging={start:t,current:t,feature:n,edge:r}},endDrag(){if(!e.apolloDragging)throw new Error("endDrag() called with no current drag in progress");const{current:t,edge:n,feature:r,start:o}=e.apolloDragging;if(Math.abs(t.x-o.x)<=4)return e.setDragging(),void e.setCursor();const{displayedRegions:a}=e.lgv,i=e.getAssemblyId(a[o.regionNumber].assemblyName);let s;if("max"===n){const e=r._id;s=new er.LocationEndChange({typeName:"LocationEndChange",changedIds:[e],featureId:e,oldEnd:r.max,newEnd:t.bp,assembly:i})}else{const e=r._id;s=new er.LocationStartChange({typeName:"LocationStartChange",changedIds:[e],featureId:e,oldStart:r.min,newStart:t.bp,assembly:i})}e.changeManager.submit(s),e.setDragging(),e.setCursor()}}))).actions((e=>({onMouseDown(t){const n=e.getMousePosition(t);rF(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseDown(e,n,t)},onMouseMove(t){const n=e.getMousePosition(t);if(e.apolloDragging)return e.setCursor("col-resize"),void e.continueDrag(n,t);rF(n)?n.featureAndGlyphUnderMouse.glyph.onMouseMove(e,n,t):(e.setApolloHover(),e.setCursor())},onMouseLeave(t){e.setDragging(),e.setApolloHover();const n=e.getMousePosition(t);rF(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseLeave(e,n,t)},onMouseUp(t){const n=e.getMousePosition(t);rF(n)&&n.featureAndGlyphUnderMouse.glyph.onMouseUp(e,n,t),e.apolloDragging&&e.endDrag()}}))).actions((e=>({afterAttach(){l.addDisposer(e,s.autorun((()=>{if(!e.lgv.initialized||e.regionCannotBeRendered())return;const t=e.overlayCanvas?.getContext("2d");if(!t)return;t.clearRect(0,0,e.lgv.dynamicBlocks.totalWidthPx,e.featuresHeight);const{apolloDragging:n,apolloHover:r}=e;if(!r)return;const{glyph:o}=r;o.drawHover(e,t),o.drawTooltip(e,t),n&&e.getGlyph(n.feature.topLevelFeature).drawDragPreview(e,t)}),{name:"LinearApolloDisplayRenderMouseoverAndDrag"}))}})))}(0,t).props({tabularEditor:l.types.optional(bM,{})}).named("LinearApolloDisplay")}const lF=r.ConfigurationSchema("LinearApolloSixFrameDisplay",{},{explicitIdentifier:"displayId",explicitlyTyped:!0});let cF=null,uF=null,fF=null,dF=null;if("document"in globalThis)for(const e of["forward","backward"])for(const t of["light","dark"]){const n=document.createElement("canvas"),r=10;n.width=n.height=r;const o=n.getContext("2d");if(o){const a="light"===t?"rgba(0,0,0,0)":"rgba(0,0,0,0.75)",i="light"===t?"rgba(255,255,255,0.25)":"rgba(0,0,0,0.50)",s="forward"===e?o.createLinearGradient(0,r,r,0):o.createLinearGradient(0,0,r,r);s.addColorStop(0,a),s.addColorStop(.25,a),s.addColorStop(.25,i),s.addColorStop(.5,i),s.addColorStop(.5,a),s.addColorStop(.75,a),s.addColorStop(.75,i),s.addColorStop(1,i),o.fillStyle=s,o.fillRect(0,0,10,10),"forward"===e?"light"===t?cF=o.createPattern(n,"repeat"):fF=o.createPattern(n,"repeat"):"light"===t?uF=o.createPattern(n,"repeat"):dF=o.createPattern(n,"repeat")}}function pF(e,t){for(const n of e)if(IN(n,t))return!0;return!1}function hF(e,t,r,o){const{session:a}=o,{apolloDataStore:i}=a,{featureTypeOntology:s}=i.ontologyManager;if(!s)throw new Error("featureTypeOntology is undefined");const l=s.isTypeOf(r.type,"transcript");if(null===t)return;const{bp:c,refName:u,regionNumber:f,x:d}=e,{lgv:p}=o,{offsetPx:h}=p,m=p.bpToPx({refName:u,coord:t.min,regionNumber:f}),g=p.bpToPx({refName:u,coord:t.max,regionNumber:f});if(void 0!==m&&void 0!==g&&!(Math.abs(g.offsetPx-h-(m.offsetPx-h))<8)&&l){const e=r;if(!e.children)return;const t=[];for(const n of e.children.values())s.isTypeOf(n.type,"exon")&&t.push(n);const o=t.find((e=>{const[t,r]=n.intersection2(c,c+1,e.min,e.max);return void 0!==t&&void 0!==r}));if(!o)return;const a=p.bpToPx({refName:u,coord:o.min,regionNumber:f}),i=p.bpToPx({refName:u,coord:o.max,regionNumber:f});if(void 0===a||void 0===i)return;const l=a.offsetPx-h,m=i.offsetPx-h;if(Math.abs(m-l)<8)return;if(Math.abs(l-d)<4)return{feature:o,edge:"min"};if(Math.abs(m-d)<4)return{feature:o,edge:"max"}}}const mF={draw:function(e,t,r,o,a){const{apolloRowHeight:i,lgv:s,session:l,theme:u,highestRow:f}=o,{bpPerPx:d,displayedRegions:p,offsetPx:h}=s,m=p[a],{refName:g,reversed:y}=m,v=i,b=Math.round(.6*v),_=Math.round(.7*v),{children:w,min:S,strand:x,_id:E}=t;if(!w)return;const{apolloSelectedFeature:k}=l,{apolloDataStore:A}=l,{featureTypeOntology:C}=A.ontologyManager;if(!C)throw new Error("featureTypeOntology is undefined");const O=(s.bpToPx({refName:g,coord:S,regionNumber:a})?.offsetPx??0)-h,N=t.length/d,R=y?O-N:O,T=(1==x?3:4)*v,I=Math.round(.7*v);e.fillStyle=u?.palette.text.primary??"black",e.fillRect(R,T,N,I),e.fillStyle=c.alpha(k&&E===k._id?"rgb(0,0,0)":u?.palette.background.paper??"#ffffff",.7),e.fillRect(R+1,T+1,N-2,I-2);const P="dark"===u?.palette.mode?fF:cF,M="dark"===u?.palette.mode?dF:uF,F=y?-1:1;let j=null,D=null;x&&([j,D]=x*F==1?[P,M]:[M,P]),j&&D&&(e.fillStyle=j,e.fillRect(R+1,T+1,N-2,(I-2)/2),e.fillStyle=D,e.fillRect(R+1,T+(I-2)/2,N-2,(I-2)/2));const L=new Set;for(const[,t]of w){if(!C.isTypeOf(t.type,"transcript")&&!C.isTypeOf(t.type,"pseudogenic_transcript"))continue;const{children:r,cdsLocations:o,_id:i}=t;if(r){for(const[,t]of r){if(!C.isTypeOf(t.type,"exon"))continue;const n=(s.bpToPx({refName:g,coord:t.min,regionNumber:a})?.offsetPx??0)-h,r=t.length/d,o=y?n-r:n,i=T+(I-b)/2;e.fillStyle=u?.palette.text.primary??"black",e.fillRect(o,i,r,b),r>2&&(e.clearRect(o+1,i+1,r-2,b-2),e.fillStyle=k&&t._id===k._id?"rgb(0,0,0)":c.alpha("#f5f500",.6),e.fillRect(o+1,i+1,r-2,b-2),j&&D&&(e.fillStyle=j,e.fillRect(o+1,i+1,r-2,(b-2)/2),e.fillStyle=D,e.fillRect(o+1,i+1+(b-2)/2,r-2,(b-2)/2)))}for(const r of o){let o=0,l=0,c=1;for(const p of r.sort(((e,t)=>e.max-t.max)))if(k&&C.isTypeOf(k.type,"CDS")&&i===k.parent?._id||!pF(L,p)){const r=(p.max-p.min)/d,m=(s.bpToPx({refName:g,coord:p.min,regionNumber:a})?.offsetPx??0)-h,b=y?m-r:m;e.fillStyle=u?.palette.text.primary??"black";const 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t=e.contextMenuItems;return{contextMenuItems:()=>e.contextMenuFeature?[...t(),{label:"Create Apollo annotation",icon:ec,onClick:e.onPileupFeatureContext}]:t()}}));return e.stateModel=r,e}const _F=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"gene")||n.isTypeOf(e.type,"transcript")||n.isTypeOf(e.type,"pseudogene")||n.isTypeOf(e.type,"pseudogenic_transcript")},wF=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"gene")||n.isTypeOf(e.type,"pseudogene")},SF=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)throw new Error("featureTypeOntology is undefined");return n.isTypeOf(e.type,"transcript")||n.isTypeOf(e.type,"pseudogenic_transcript")},xF=e=>{const{attributes:t}=e,n=t?.id;return n?n[0]:e.type},EF=(e,t)=>{const{featureTypeOntology:n}=t.apolloDataStore.ontologyManager;if(!n)return xF(e);let r="";n.isTypeOf(e.type,"gene")&&(r="gene_name"),n.isTypeOf(e.type,"transcript")&&(r="transcript_name");const{attributes:o}=e,a=o?.[r];return a?a[0]:xF(e)};function kF({annotationFeature:e,assembly:t,handleClose:n,refSeqId:r,session:o}){const a=o,i=u.useMemo((()=>Object.keys(e.children??{})),[e]),s=u.useMemo((()=>{for(const[,e]of a.apolloDataStore.assemblies)if(e._id===t.name)for(const[,t]of e.refSeqs)if(t._id===r)return t.features;return[]}),[]),[f,d]=u.useState(!0),[p,h]=u.useState(i),[m,g]=u.useState(""),[y,v]=u.useState([]),[b,_]=u.useState();return u.useEffect((()=>{g("");let t=[],n=[];if(e.children){const r=Object.values(e.children).filter((e=>SF(e,a))).filter((e=>p.includes(e._id)));t=r.map((e=>e.min)),n=r.map((e=>e.max))}const{featureTypeOntology:r}=a.apolloDataStore.ontologyManager;r&&r.isTypeOf(e.type,"transcript")&&(t=[e.min,...t],n=[e.max,...n]);const 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p=this.clientStore.assemblies.get(a);p||(p=this.clientStore.addAssembly(a));let h=p.refSeqs.get(d);h||(h=p.addRefSeq(d,s));const m=h.getSequence(l,i);if(m.length===i-l)return{seq:m,refSeq:d};const g=this.clientStore.getInternetAccount(a),{baseURL:y}=g,v=new URL("sequence",y),b=new URLSearchParams({refSeq:d,start:String(l),end:String(i)});v.search=b.toString();const _=v.toString(),w=this.getSeqFromServer(g,_,h,l,i);this.inFlight.set(t,w);const S=await w;return this.checkSocket(a,s,g),this.inFlight.delete(t),{seq:S,refSeq:d}}async getSeqFromServer(e,t,n,r,o){const a=await this.fetch(e,t);if(!a.ok){let e;try{e=await a.text()}catch{e=""}throw new Error(`getSequence failed: ${a.status} (${a.statusText})${e?` (${e})`:""}`)}const i=await a.text();return n.addSequence({sequence:i,start:r,stop:o}),i}async getRefNameAliases(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,a=new URL("refSeqs",o),i=new URLSearchParams({assembly:e});a.search=i.toString();const s=a.toString(),l=await this.fetch(r,s);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRefNameAliases failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}return(await l.json()).map((e=>({refName:e.name,aliases:[e._id,...e.aliases],uniqueId:`alias-${e._id}`})))}async getRegions(e){const{assemblyManager:t}=n.getSession(this.clientStore);if(!t.get(e))throw new Error(`Could not find assembly with name "${e}"`);const r=this.clientStore.getInternetAccount(e),{baseURL:o}=r,a=new URL("refSeqs",o),i=new URLSearchParams({assembly:e});a.search=i.toString();const s=a.toString(),l=await this.fetch(r,s);if(!l.ok){let e;try{e=await l.text()}catch{e=""}throw new Error(`getRegions failed: ${l.status} (${l.statusText})${e?` (${e})`:""}`)}return(await l.json()).map((e=>({refName:e.name,start:0,end:e.length})))}getAssemblies(e){const{assemblyManager:t}=n.getSession(this.clientStore);return t.assemblies.filter((t=>{const n=r.getConf(t,["sequence","metadata"]);return!(!(n&&n.apollo&&n.internetAccountConfigId)||e&&n.internetAccountConfigId!==e)}))}async submitChange(e,t={}){const{internetAccountId:n}=t,r=this.clientStore.getInternetAccount("assembly"in e?e.assembly:void 0,n),{baseURL:o}=r,a=new URL("changes",o).href,i=await this.fetch(r,a,{method:"POST",body:JSON.stringify(e.toJSON()),headers:{"Content-Type":"application/json"}});if(!i.ok){const e=await wd(i,"submitChange failed");throw new Error(e)}const s=new er.ValidationResultSet;return i.ok||(s.ok=!1),s}}class ej extends ZF{async getFeatures(){return[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,a=this.clientStore.assemblies.get(t);if(!a)return{seq:"",refSeq:r};const i=a.refSeqs.get(r);return i?{seq:i.getSequence(o,n),refSeq:r}:{seq:"",refSeq:r}}async getRefNameAliases(e){const t=this.clientStore.assemblies.get(e),n=[];if(!t)return n;for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getRegions(e){const t=this.clientStore.assemblies.get(e);if(!t)return[];const n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.file&&!t.internetAccountConfigId)}))}async submitChange(e,t={}){const{clientStore:n}=this,{assemblies:r}=n;n.clearCheckResults();for(const[,e]of r)if("InMemoryFileDriver"===e.backendDriverType){const t=await yd(e);n.addCheckResults(t)}return new er.ValidationResultSet}async searchFeatures(e,t){return[]}}class tj extends ZF{async loadAssembly(e){const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e);if(!o)throw new Error(`Assembly ${e} not found`);const{file:a}=r.getConf(o,["sequence","metadata"]),i=require("node:fs");return gd(e,await i.promises.readFile(a,"utf8"),this.clientStore)}async getAssembly(e){let t=this.clientStore.assemblies.get(e);return t||(t=await this.loadAssembly(e)),t}async getRefNameAliases(e){const t=await this.getAssembly(e),n=[];for(const[,e]of t.refSeqs)n.push({refName:e.name,aliases:[e._id],uniqueId:`alias-${e._id}`});return n}async getFeatures(e){return await this.getAssembly(e.assemblyName),[[],[]]}async getSequence(e){const{assemblyName:t,end:n,refName:r,start:o}=e,a=(await this.getAssembly(t)).refSeqs.get(r);if(!a)throw new Error(`refSeq ${r} not found in client data store`);return{seq:a.getSequence(o,n),refSeq:r}}async getRegions(e){const t=await this.getAssembly(e),n=[];for(const[,r]of t.refSeqs)n.push({assemblyName:e,refName:r.name,start:r.sequence[0].start,end:r.sequence[0].stop});return n}getAssemblies(){const{assemblyManager:e}=n.getSession(this.clientStore);return e.assemblies.filter((e=>{const t=r.getConf(e,["sequence","metadata"]);return Boolean(t&&t.apollo&&!t.internetAccountConfigId&&t.file)}))}async submitChange(e){if(!B.isAssemblySpecificChange(e))throw new Error(`Cannot use this type of change with local file: "${e.typeName}"`);const{assemblyManager:t}=n.getSession(this.clientStore),o=t.get(e.assembly);if(!o)throw new Error(`Could not find assembly with name "${e.assembly}"`);const{file:a}=r.getConf(o,["sequence","metadata"]),i=this.clientStore.assemblies.get(e.assembly);if(!i)throw new Error(`Could not find assembly in client with name "${e.assembly}"`);const s=new Set(...i.refSeqs.keys()),{checkResults:c}=this.clientStore;for(const e of c.values())s.has(e.refSeq)&&c.delete(e._id);const u=await yd(i);this.clientStore.addCheckResults(u);const f=[{directive:"gff-version",value:"3"}];for(const[,e]of i.refSeqs)f.push({directive:"sequence-region",value:`${e.name} 1 ${e.sequence[0].stop}`});for(const e of i.comments)f.push({comment:e});for(const[,e]of i.refSeqs){const{features:t}=e;for(const[,e]of t)f.push(er.annotationFeatureToGFF3(l.getSnapshot(e)))}for(const[,e]of i.refSeqs){const[t]=e.sequence,n=er.splitStringIntoChunks(t.sequence,80).join("\n");f.push({id:e.name,description:e.description,sequence:n})}const d=md.formatSync(f),p=require("node:fs");return await p.promises.writeFile(a,d,"utf8"),new er.ValidationResultSet}async searchFeatures(e,t){return[]}}function nj(e,t){const o=new AbortController,{signal:a}=o,i=e.evaluateExtensionPoint("Apollo-extendAnnotationFeature",xT.AnnotationFeatureModel),c=function(e){return l.types.model("ClientDataStore",{typeName:l.types.optional(l.types.literal("Client"),"Client"),assemblies:l.types.map(xT.ApolloAssembly),checkResults:l.types.map(xT.CheckResult),ontologyManager:l.types.optional(BN,{})}).views((t=>({get internetAccounts(){return l.getRoot(t).internetAccounts},get pluginConfiguration(){return l.getRoot(t).jbrowse.configuration.ApolloPlugin},getFeature:n=>l.resolveIdentifier(e,t.assemblies,n)}))).actions((e=>({addAssembly(t,n){const r={_id:t,refSeqs:{}};return n&&(r.backendDriverType=n),e.assemblies.put(r)},addFeature(t,n){const r=e.assemblies.get(t);if(!r)throw new Error(`Could not find assembly "${t}" to add feature "${n._id}"`);const o=r.refSeqs.get(n.refSeq);if(!o)throw new Error(`Could not find refSeq "${n.refSeq}" to add feature "${n._id}"`);o.features.put(n)},deleteFeature(t){const n=e.getFeature(t);if(!n)throw new Error(`Could not find feature "${t}" to delete`);const{_id:r,parent:o}=n;o?o.deleteChild(t):l.getParentOfType(n,xT.ApolloRefSeq).deleteFeature(r)},deleteAssembly(t){e.assemblies.delete(t)},addCheckResult(t){e.checkResults.put(t)},addCheckResults(t){for(const n of t)e.checkResults.has(n._id)||e.checkResults.put(n)},deleteCheckResult(t){e.checkResults.delete(t)},clearCheckResults(){e.checkResults.clear()}}))).volatile((e=>({changeManager:new XF(e),collaborationServerDriver:new QF(e),inMemoryFileDriver:new ej(e),desktopFileDriver:n.isElectron?new tj(e):void 0}))).actions((e=>({afterCreate(){l.addDisposer(e,s.autorun((()=>{const{ontologyManager:t,pluginConfiguration:o}=e,a=o.ontologies;for(const o of a||[]){const[a,i,s,l]=[r.readConfObject(o,"name"),r.readConfObject(o,"version"),r.readConfObject(o,"source"),r.readConfObject(o,"textIndexFields")];if(!t.findOntology(a)){const r=n.getSession(e),{jobsManager:o}=r,c=new AbortController,u=`Loading ontology "${a}"`,f={name:u,statusMessage:`Loading ontology "${a}", version "${i}", this may take a while`,progressPct:0,cancelCallback:()=>{c.abort(),o.abortJob(f.name)}};t.addOntology(a,i,s,{textIndexing:{indexFields:l},update:(e,t)=>{0!==t?100!==t?o.update(u,e,t):o.done(f):o.runJob(f)}})}}})))}}))).views((e=>({getBackendDriver(t){if(!t)return e.collaborationServerDriver;const o=n.getSession(e),{assemblyManager:a}=o,i=a.get(t);if(!i)return e.collaborationServerDriver;const{file:s,internetAccountConfigId:l}=r.getConf(i,["sequence","metadata"]);return n.isElectron&&s?e.desktopFileDriver:l?e.collaborationServerDriver:e.inMemoryFileDriver},getInternetAccount(t,o){if(!(t??o))throw new Error("Must provide either assemblyName or internetAccountId");let a=o;if(t&&!a){const{assemblyManager:o}=n.getSession(e),i=o.get(t);if(!i)throw new Error(`No assembly found with name ${t}`);({internetAccountConfigId:a}=r.getConf(i,["sequence","metadata"]))}const{internetAccounts:i}=e,s=i.find((e=>e.internetAccountId===a));if(!s)throw new Error(`No InternetAccount found with config id ${o}`);return s}}))).actions((e=>({loadFeatures:l.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const[r,o]=yield t.getFeatures(n);if(0===r.length)continue;const{assemblyName:a,refName:i}=n;let s=e.assemblies.get(a);s||(s=e.assemblies.put({_id:a,refSeqs:{}}));const[l]=r;let c=s.refSeqs.get(l.refSeq);c||(c=s.refSeqs.put({_id:l.refSeq,name:i,features:{}}));for(const e of r)c.features.has(e._id)||c.features.put(e);e.addCheckResults(o)}})),loadRefSeq:l.flow((function*(t){for(const n of t){const t=e.getBackendDriver(n.assemblyName);if(!t)return;const{refSeq:r,seq:o}=yield t.getSequence(n),{assemblyName:a,end:i,refName:s,start:l}=n;let c=e.assemblies.get(a);c||(c=e.assemblies.put({_id:a,refSeqs:{}}));let u=c.refSeqs.get(r);u||(u=c.refSeqs.put({_id:r,name:s,sequence:[]})),u.addSequence({start:l,stop:i,sequence:o})}}))})))}(i),u=t.props({apolloDataStore:l.types.optional(c,{typeName:"Client"}),apolloSelectedFeature:l.types.safeReference(i),jobsManager:l.types.optional(KF,{})}).extend((()=>{const e=s.observable.array([]);return{views:{get collaborators(){return e}},actions:{addOrUpdateCollaborator(t){const n=e.find((e=>e.id===t.id));n?n.locations=t.locations:e.push(t)}}}})).actions((e=>({apolloSetSelectedFeature(t){e.apolloSelectedFeature=t},addApolloTrackConfig(t,n){const o=`apollo_track_${t.name}`;e.tracks.some((e=>e.trackId===o))||e.addTrackConf({type:"ApolloTrack",trackId:o,name:`Annotations (${r.getConf(t,"displayName")||t.name})`,assemblyNames:[t.name],textSearching:{textSearchAdapter:{type:"ApolloTextSearchAdapter",trackId:o,assemblyNames:[t.name],textSearchAdapterId:`apollo_search_${t.name}`,...n?{baseURL:{uri:n,locationType:"UriLocation"}}:{}}}})},broadcastLocations(){const{internetAccounts:t}=l.getRoot(e),n=[];for(const t of e.views){if("LinearGenomeView"!==t.type)return;const r=t;if(r.initialized){const{dynamicBlocks:t}=r;t.forEach((t=>{if(void 0!==t.regionNumber){const{assemblyName:r,end:o,refName:a,start:i}=t,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&n.push({assemblyName:r,refName:a,start:i,end:o})}}))}}if(0===n.length){for(const e of t)"baseURL"in e&&e.postUserLocation([]);return}const r=[];for(const e of t)if("baseURL"in e){for(const e of n)r.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(r)}}}))).actions((e=>({afterCreate:l.flow((function*(){const t=l.getSnapshot(e),{id:n,name:r}=t;l.applySnapshot(e,{name:r,id:n});const{internetAccounts:o,jbrowse:i}=l.getRoot(e);s.autorun((()=>{const t=[];for(const n of e.views){if("LinearGenomeView"!==n.type)return;const r=n;if(r.initialized){const{dynamicBlocks:n}=r;n.forEach((n=>{if(void 0!==n.regionNumber){const{assemblyName:r,end:o,refName:a,start:i}=n,s=e.apolloDataStore.assemblies.get(r);s&&"CollaborationServerDriver"===s.backendDriverType&&t.push({assemblyName:r,refName:a,start:i,end:o})}}))}}if(0===t.length){for(const e of o)"baseURL"in e&&e.postUserLocation([]);return}const n=[];for(const e of o)if("baseURL"in e){for(const e of t)n.push({assemblyId:e.assemblyName,refSeq:e.refName,start:e.start,end:e.end});e.postUserLocation(n)}}),{name:"ApolloSession"});for(const n of o){if("ApolloInternetAccount"!==n.type)continue;const{baseURL:r}=n,o=new URL("jbrowse/config.json",r).href,s=n.getFetcher({locationType:"UriLocation",uri:o});let c,u;try{c=yield s(o,{signal:a})}catch(e){console.error(e);continue}if(c.ok){try{u=yield c.json()}catch(e){console.error(e);continue}l.applySnapshot(i,u),l.applySnapshot(e,t)}else{const e=yield wd(c,"Failed to fetch assemblies");console.error(e)}}})),beforeDestroy(){o.abort("destroying session model")}}))).views((e=>{const t=e.getTrackActionMenuItems;return{getTrackActionMenuItems(n){if("ApolloTrack"===n.type||"ReferenceSequenceTrack"===n.type)return t?.(n);const o=r.readConfObject(n,"trackId");return o.endsWith("-sessionTrack")?[...t?.(n)??[],{label:"Save track to Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=l.getRoot(e),a=l.getSnapshot(r);let i;i=er.filterJBrowseConfig(a),0===Object.keys(i).length&&(i=void 0);const s={...l.getSnapshot(n),trackId:o.slice(0,o.length-13)};for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new er.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:i?.tracks&&[...i.tracks,s]}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track added","success")}e.deleteTrackConf(n),r.addTrackConf(s)},icon:YF}]:[...t?.(n)??[],{label:"Remove track from Apollo",onClick:async()=>{const{internetAccounts:t,jbrowse:r}=l.getRoot(e),a=l.getSnapshot(r);let i;i=er.filterJBrowseConfig(a),0===Object.keys(i).length&&(i=void 0);const s=i?.tracks?.filter((e=>e.trackId!==o));for(const n of t){if("ApolloInternetAccount"!==n.type)continue;const t=new er.ImportJBrowseConfigChange({typeName:"ImportJBrowseConfigChange",oldJBrowseConfig:i,newJBrowseConfig:{...i,tracks:s}}),{internetAccountId:r}=n;await e.apolloDataStore.changeManager.submit(t,{internetAccountId:r});const{notify:o}=e;o("Track removed","success")}e.deleteTrackConf(n),r.deleteTrackConf(n)},icon:YF}]}}}));return l.types.snapshotProcessor(u,{postProcessor(e,t){e.apolloSelectedFeature=void 0;const n=Object.fromEntries(Object.entries(e.apolloDataStore.assemblies).filter((([,e])=>"InMemoryFileDriver"===e.backendDriverType)));if(e.apolloDataStore={typeName:"Client",assemblies:n,checkResults:{}},!t)return e;const{apolloDataStore:r}=t,{checkResults:o}=r;for(const[,t]of o){const[n]=t.ids;if(!n)continue;const o=r.assemblies.get(n.assemblyId);o&&"InMemoryFileDriver"===o.backendDriverType&&(e.apolloDataStore.checkResults[t._id]=l.getSnapshot(t))}return e}})}const rj="WorkerGlobalScope"in globalThis;for(const[e,t]of Object.entries(er.changes))B.changeRegistry.registerChange(e,t);const oj=new er.CDSCheck;B.checkRegistry.registerCheck(oj.name,oj),er.validationRegistry.registerValidation(new er.CoreValidation),er.validationRegistry.registerValidation(new er.ParentChildValidation),e.default=class extends A.default{name="ApolloPlugin";version="0.3.6";configurationSchema=vF;install(e){!function(e){e.addAdapterType((()=>new j.default({name:"ApolloSequenceAdapter",configSchema:UR,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:BR})))}(e),function(e){e.addAdapterType((()=>new j.default({name:"ApolloRefNameAliasAdapter",configSchema:PR,adapterMetadata:{category:void 0,hiddenFromGUI:!0,description:void 0},AdapterClass:IR})))}(e),function(e){e.addTextSearchAdapterType((()=>new o.TextSearchAdapterType({name:"ApolloTextSearchAdapter",displayName:"Apollo text search adapter",configSchema:VR,AdapterClass:$R,description:"Apollo Text Search adapter"})))}(e),e.addWidgetType((()=>{const e=r.ConfigurationSchema("ApolloFeatureDetailsWidget",{});return new o.WidgetType({name:"ApolloFeatureDetailsWidget",heading:"Apollo feature details",configSchema:e,stateModel:RT,ReactComponent:ST})})),e.addWidgetType((()=>{const e=r.ConfigurationSchema("ApolloTranscriptDetails",{});return new o.WidgetType({name:"ApolloTranscriptDetails",heading:"Apollo transcript details",configSchema:e,stateModel:TT,ReactComponent:YP})})),e.addTrackType((()=>{const t=r.ConfigurationSchema("ApolloTrack",{adapter:""},{baseConfiguration:o.createBaseTrackConfig(e),explicitIdentifier:"trackId"});return new o.TrackType({name:"ApolloTrack",configSchema:t,stateModel:o.createBaseTrackModel(e,"ApolloTrack",t)})})),e.addInternetAccountType((()=>new o.InternetAccountType({name:"ApolloInternetAccount",configSchema:tc,stateModel:RR(tc)}))),e.addDisplayType((()=>new o.DisplayType({name:"LinearApolloDisplay",configSchema:KP,stateModel:sF(0,KP),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:WF}))),e.addDisplayType((()=>new o.DisplayType({name:"LinearApolloSixFrameDisplay",configSchema:lF,stateModel:yF(0,lF),trackType:"ApolloTrack",viewType:"LinearGenomeView",ReactComponent:$F}))),e.addToExtensionPoint("Core-extendSession",nj.bind(this,e)),e.addToExtensionPoint("Core-extendPluggableElement",(e=>{if("LinearGenomeView"===e.name){const{stateModel:t}=e,r=t.views((e=>{const t=e.rubberBandMenuItems;return{rubberBandMenuItems:()=>[...t(),{label:"Add new feature",icon:ec,onClick:()=>{const t=n.getSession(e),{leftOffset:r,rightOffset:o}=e,a=e.getSelectedRegions(r,o);t.queueDialog((e=>[KN,{session:t,handleClose:()=>{e()},region:a[0],changeManager:t.apolloDataStore.changeManager}]))}}]}}));e.stateModel=r}return e})),e.addToExtensionPoint("Core-extendPluggableElement",bF),e.addToExtensionPoint("Core-extendPluggableElement",NF),rj||e.addToExtensionPoint("Core-extendWorker",(t=>"on"in t&&t.on?(t.on("apollo",(async n=>{if("object"!=typeof(r=n)||null===r||!("apollo"in r)||!0!==r.apollo)return;var r;const{apollo:o,messageId:a,method:i}=n;switch(i){case"getSequence":{const{region:r}=n,{assemblyName:i}=r,s=e.rootModel?.session?.apolloDataStore;if(!s)break;const l=s.getBackendDriver(i),{seq:c}=await l.getSequence(r);t.workers[0].postMessage({apollo:o,messageId:a,sequence:c});break}case"getRegions":{const{assembly:r}=n,i=e.rootModel?.session?.apolloDataStore;if(!i)break;const s=i.getBackendDriver(r),l=await s.getRegions(r);t.workers[0].postMessage({apollo:o,messageId:a,regions:l});break}case"getRefNameAliases":{const{assembly:r}=n,i=e.rootModel?.session?.apolloDataStore;if(!i)break;const s=i.getBackendDriver(r),l=await s.getRefNameAliases(r);t.workers[0].postMessage({apollo:o,messageId:a,refNameAliases:l});break}}})),t):t))}configure(e){n.isAbstractMenuManager(e.rootModel)&&(e.rootModel.appendToMenu("Apollo",{label:"Download GFF3",onClick:e=>{e.queueDialog((t=>[nR,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"Manage Checks",onClick:e=>{e.queueDialog((t=>[aR,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"View Change Log",onClick:e=>{e.queueDialog((t=>[pR,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"Open local GFF3 file",onClick:e=>{e.queueDialog((t=>[fR,{session:e,handleClose:()=>{t()},inMemoryFileDriver:e.apolloDataStore.inMemoryFileDriver}]))}}),e.rootModel.appendToMenu("Apollo",{label:"View check results",onClick:e=>{e.queueDialog((t=>[yR,{session:e,handleClose:()=>{t()}}]))}}),e.rootModel.appendToMenu("Apollo",{label:"Log out",onClick:e=>{e.queueDialog((t=>[oR,{session:e,handleClose:()=>{t()}}]))}}))}},Object.defineProperty(e,"__esModule",{value:!0})}));
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