@apollo-annotation/jbrowse-plugin-apollo 0.3.5 → 0.3.6

package/src/session/session.ts

@@ -1,27 +1,31 @@
 /* eslint-disable @typescript-eslint/no-unsafe-return */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-assignment */
-import { ClientDataStore as ClientDataStoreType } from '@apollo-annotation/common'
+import { type ClientDataStore as ClientDataStoreType } from '@apollo-annotation/common'
 import {
-  AnnotationFeature,
+  type AnnotationFeature,
   AnnotationFeatureModel,
 } from '@apollo-annotation/mst'
 import {
-  filterJBrowseConfig,
   ImportJBrowseConfigChange,
-  JBrowseConfig,
-  UserLocation,
+  type JBrowseConfig,
+  type UserLocation,
+  filterJBrowseConfig,
 } from '@apollo-annotation/shared'
-import { readConfObject, getConf } from '@jbrowse/core/configuration'
-import { BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes'
-import PluginManager from '@jbrowse/core/PluginManager'
-import { AbstractSessionModel, SessionWithAddTracks } from '@jbrowse/core/util'
-import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'
+import type PluginManager from '@jbrowse/core/PluginManager'
+import { type AssemblyModel } from '@jbrowse/core/assemblyManager/assembly'
+import { getConf, readConfObject } from '@jbrowse/core/configuration'
+import { type BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes'
+import {
+  type AbstractSessionModel,
+  type SessionWithAddTracks,
+} from '@jbrowse/core/util'
+import { type LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'
 import SaveIcon from '@mui/icons-material/Save'
 import { autorun, observable } from 'mobx'
 import {
-  Instance,
-  SnapshotOut,
+  type Instance,
+  type SnapshotOut,
   applySnapshot,
   flow,
   getRoot,
@@ -29,13 +33,13 @@ import {
   types,
 } from 'mobx-state-tree'
 
-import { ApolloInternetAccountModel } from '../ApolloInternetAccount/model'
+import { type ApolloInternetAccountModel } from '../ApolloInternetAccount/model'
 import { ApolloJobModel } from '../ApolloJobModel'
-import { ChangeManager } from '../ChangeManager'
-import { ApolloRootModel } from '../types'
+import { type ChangeManager } from '../ChangeManager'
+import { type ApolloRootModel } from '../types'
 import { createFetchErrorMessage } from '../util'
+
 import { clientDataStoreFactory } from './ClientDataStore'
-import { AssemblyModel } from '@jbrowse/core/assemblyManager/assembly'
 
 export interface ApolloSession extends AbstractSessionModel {
   apolloDataStore: ClientDataStoreType & { changeManager: ChangeManager }
@@ -119,16 +123,6 @@ export function extendSession(
                   : {}),
               },
             },
-            displays: [
-              {
-                type: 'LinearApolloDisplay',
-                displayId: `${trackId}-LinearApolloDisplay`,
-              },
-              {
-                type: 'SixFrameFeatureDisplay',
-                displayId: `${trackId}-SixFrameFeatureDisplay`,
-              },
-            ],
           })
         }
       },

package/src/types.ts

@@ -1,8 +1,8 @@
-import { BaseInternetAccountModel } from '@jbrowse/core/pluggableElementTypes'
-import { AppRootModel } from '@jbrowse/core/util'
+import { type BaseInternetAccountModel } from '@jbrowse/core/pluggableElementTypes'
+import { type AppRootModel } from '@jbrowse/core/util'
 
-import { ApolloInternetAccountModel } from './ApolloInternetAccount/model'
-import { ApolloSessionModel } from './session'
+import { type ApolloInternetAccountModel } from './ApolloInternetAccount/model'
+import { type ApolloSessionModel } from './session'
 
 export interface ApolloRootModel extends Omit<AppRootModel, 'session'> {
   session: ApolloSessionModel

package/src/util/annotationFeatureUtils.ts

@@ -1,4 +1,4 @@
-import { AnnotationFeature } from '@apollo-annotation/mst'
+import { type AnnotationFeature } from '@apollo-annotation/mst'
 
 export function getFeatureName(feature: AnnotationFeature) {
   const { attributes } = feature

package/src/util/index.ts

@@ -1,8 +1,8 @@
 import { getParent } from 'mobx-state-tree'
 
-import { ApolloInternetAccountModel } from '../ApolloInternetAccount/model'
-import { ApolloSessionModel } from '../session'
-import { ApolloRootModel } from '../types'
+import { type ApolloInternetAccountModel } from '../ApolloInternetAccount/model'
+import { type ApolloSessionModel } from '../session'
+import { type ApolloRootModel } from '../types'
 
 export async function createFetchErrorMessage(
   response: Response,

package/src/util/loadAssemblyIntoClient.ts

@@ -1,7 +1,14 @@
-import { ClientDataStore, checkRegistry } from '@apollo-annotation/common'
-import { ApolloAssemblyI, CheckResultSnapshot } from '@apollo-annotation/mst'
+import { type ClientDataStore, checkRegistry } from '@apollo-annotation/common'
+import {
+  type ApolloAssemblyI,
+  type CheckResultSnapshot,
+} from '@apollo-annotation/mst'
 import { gff3ToAnnotationFeature } from '@apollo-annotation/shared'
-import gff, { GFF3Comment, GFF3Feature, GFF3Sequence } from '@gmod/gff'
+import gff, {
+  type GFF3Comment,
+  type GFF3Feature,
+  type GFF3Sequence,
+} from '@gmod/gff'
 import { getSnapshot } from 'mobx-state-tree'
 
 export async function loadAssemblyIntoClient(

package/src/ApolloSixFrameRenderer/ApolloSixFrameRenderer.tsx

@@ -1,13 +0,0 @@
-/* eslint-disable @typescript-eslint/require-await */
-import { RenderProps, RendererType } from '@jbrowse/core/pluggableElementTypes'
-import RpcManager from '@jbrowse/core/rpc/RpcManager'
-
-export default class ApolloSixFrameRenderer extends RendererType {
-  async renderInClient(_rpcManager: RpcManager, args: RenderProps) {
-    return this.render(args)
-  }
-
-  async freeResourcesInClient(_rpcManager: RpcManager, _args: RenderProps) {
-    return 0
-  }
-}