@apollo-annotation/jbrowse-plugin-apollo 0.3.11 → 0.3.13
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts +6 -0
- package/dist/ApolloInternetAccount/components/AuthTypeSelector.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts +5 -0
- package/dist/ApolloInternetAccount/components/LoginButtons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts +4 -0
- package/dist/ApolloInternetAccount/components/LoginIcons.d.ts.map +1 -0
- package/dist/ApolloInternetAccount/index.d.ts +3 -0
- package/dist/ApolloInternetAccount/index.d.ts.map +1 -0
- package/dist/ApolloJobModel.d.ts +53 -0
- package/dist/ApolloJobModel.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts +12 -0
- package/dist/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.d.ts.map +1 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts +3 -0
- package/dist/ApolloRefNameAliasAdapter/index.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts +27 -0
- package/dist/ApolloSequenceAdapter/ApolloSequenceAdapter.d.ts.map +1 -0
- package/dist/ApolloSequenceAdapter/index.d.ts +3 -0
- package/dist/ApolloSequenceAdapter/index.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts +13 -0
- package/dist/ApolloTextSearchAdapter/ApolloTextSearchAdapter.d.ts.map +1 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts +3 -0
- package/dist/ApolloTextSearchAdapter/index.d.ts.map +1 -0
- package/dist/BackendDrivers/BackendDriver.d.ts +26 -0
- package/dist/BackendDrivers/BackendDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts +206 -0
- package/dist/BackendDrivers/CollaborationServerDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts +160 -0
- package/dist/BackendDrivers/DesktopFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts +162 -0
- package/dist/BackendDrivers/InMemoryFileDriver.d.ts.map +1 -0
- package/dist/BackendDrivers/index.d.ts +5 -0
- package/dist/BackendDrivers/index.d.ts.map +1 -0
- package/dist/ChangeManager.d.ts +24 -0
- package/dist/ChangeManager.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts +6 -0
- package/dist/FeatureDetailsWidget/ApolloFeatureDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts +12 -0
- package/dist/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts +4 -0
- package/dist/FeatureDetailsWidget/AttributeKey.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts +6 -0
- package/dist/FeatureDetailsWidget/AttributeKeySelector.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts +9 -0
- package/dist/FeatureDetailsWidget/Attributes.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts +8 -0
- package/dist/FeatureDetailsWidget/BasicInformation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts +9 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeEditor.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts +5 -0
- package/dist/FeatureDetailsWidget/DefaultAttributeViewer.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts +7 -0
- package/dist/FeatureDetailsWidget/FeatureDetailsNavigation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/NumberTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/Sequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts +8 -0
- package/dist/FeatureDetailsWidget/StringTextField.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts +10 -0
- package/dist/FeatureDetailsWidget/TranscriptSequence.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts +9 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetEditLocation.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts +6 -0
- package/dist/FeatureDetailsWidget/TranscriptWidgetSummary.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/index.d.ts +5 -0
- package/dist/FeatureDetailsWidget/index.d.ts.map +1 -0
- package/dist/FeatureDetailsWidget/model.d.ts +123 -0
- package/dist/FeatureDetailsWidget/model.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts +5 -0
- package/dist/LinearApolloDisplay/components/CheckResultWarnings.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts +7 -0
- package/dist/LinearApolloDisplay/components/LinearApolloDisplay.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/BoxGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts +3 -0
- package/dist/LinearApolloDisplay/glyphs/GenericChildGlyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts +26 -0
- package/dist/LinearApolloDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts +4 -0
- package/dist/LinearApolloDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts +12 -0
- package/dist/LinearApolloDisplay/glyphs/util.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/index.d.ts +3 -0
- package/dist/LinearApolloDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts +254 -0
- package/dist/LinearApolloDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts +349 -0
- package/dist/LinearApolloDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts +273 -0
- package/dist/LinearApolloDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts +656 -0
- package/dist/LinearApolloDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts +300 -0
- package/dist/LinearApolloDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloDisplay/types.d.ts +2 -0
- package/dist/LinearApolloDisplay/types.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts +7 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts +2 -0
- package/dist/LinearApolloReferenceSequenceDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts +6 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts +5 -0
- package/dist/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts +4 -0
- package/dist/LinearApolloReferenceSequenceDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts +236 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts +245 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts +246 -0
- package/dist/LinearApolloReferenceSequenceDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts +7 -0
- package/dist/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts +8 -0
- package/dist/LinearApolloSixFrameDisplay/components/TrackLines.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/components/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts +20 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/Glyph.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/glyphs/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts +3 -0
- package/dist/LinearApolloSixFrameDisplay/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts +257 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/base.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts +355 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/index.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts +283 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/layouts.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts +668 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/mouseEvents.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts +306 -0
- package/dist/LinearApolloSixFrameDisplay/stateModel/rendering.d.ts.map +1 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts +2 -0
- package/dist/LinearApolloSixFrameDisplay/types.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts +8 -0
- package/dist/OntologyManager/OntologyStore/fulltext-stopwords.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts +27 -0
- package/dist/OntologyManager/OntologyStore/fulltext.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts +93 -0
- package/dist/OntologyManager/OntologyStore/index.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts +71 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts +11 -0
- package/dist/OntologyManager/OntologyStore/indexeddb-storage.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts +107 -0
- package/dist/OntologyManager/OntologyStore/obo-graph-json-schema.d.ts.map +1 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts +20 -0
- package/dist/OntologyManager/OntologyStore/prefixes.d.ts.map +1 -0
- package/dist/OntologyManager/util.d.ts +4 -0
- package/dist/OntologyManager/util.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/ChangeHandling.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts +13 -0
- package/dist/TabularEditor/HybridGrid/Feature.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/FeatureAttributes.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts +6 -0
- package/dist/TabularEditor/HybridGrid/Highlight.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts +14 -0
- package/dist/TabularEditor/HybridGrid/HybridGrid.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts +8 -0
- package/dist/TabularEditor/HybridGrid/NumberCell.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts +5 -0
- package/dist/TabularEditor/HybridGrid/ToolBar.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts +11 -0
- package/dist/TabularEditor/HybridGrid/featureContextMenuItems.d.ts.map +1 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts +2 -0
- package/dist/TabularEditor/HybridGrid/index.d.ts.map +1 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts +5 -0
- package/dist/TabularEditor/TabularEditorPane.d.ts.map +1 -0
- package/dist/TabularEditor/index.d.ts +3 -0
- package/dist/TabularEditor/index.d.ts.map +1 -0
- package/dist/TabularEditor/model.d.ts +17 -0
- package/dist/TabularEditor/model.d.ts.map +1 -0
- package/dist/TabularEditor/types.d.ts +4 -0
- package/dist/TabularEditor/types.d.ts.map +1 -0
- package/dist/components/AddAssembly.d.ts +10 -0
- package/dist/components/AddAssembly.d.ts.map +1 -0
- package/dist/components/AddAssemblyAliases.d.ts +10 -0
- package/dist/components/AddAssemblyAliases.d.ts.map +1 -0
- package/dist/components/AddChildFeature.d.ts +13 -0
- package/dist/components/AddChildFeature.d.ts.map +1 -0
- package/dist/components/AddFeature.d.ts +12 -0
- package/dist/components/AddFeature.d.ts.map +1 -0
- package/dist/components/AddRefSeqAliases.d.ts +10 -0
- package/dist/components/AddRefSeqAliases.d.ts.map +1 -0
- package/dist/components/CopyFeature.d.ts +13 -0
- package/dist/components/CopyFeature.d.ts.map +1 -0
- package/dist/components/CreateApolloAnnotation.d.ts +20 -0
- package/dist/components/CreateApolloAnnotation.d.ts.map +1 -0
- package/dist/components/DeleteAssembly.d.ts +10 -0
- package/dist/components/DeleteAssembly.d.ts.map +1 -0
- package/dist/components/DeleteFeature.d.ts +15 -0
- package/dist/components/DeleteFeature.d.ts.map +1 -0
- package/dist/components/Dialog.d.ts +7 -0
- package/dist/components/Dialog.d.ts.map +1 -0
- package/dist/components/DownloadGFF3.d.ts +8 -0
- package/dist/components/DownloadGFF3.d.ts.map +1 -0
- package/dist/components/DuplicateTranscript.d.ts +15 -0
- package/dist/components/DuplicateTranscript.d.ts.map +1 -0
- package/dist/components/EditZoomThresholdDialog.d.ts +11 -0
- package/dist/components/EditZoomThresholdDialog.d.ts.map +1 -0
- package/dist/components/FilterFeatures.d.ts +10 -0
- package/dist/components/FilterFeatures.d.ts.map +1 -0
- package/dist/components/FilterTranscripts.d.ts +10 -0
- package/dist/components/FilterTranscripts.d.ts.map +1 -0
- package/dist/components/ImportFeatures.d.ts +10 -0
- package/dist/components/ImportFeatures.d.ts.map +1 -0
- package/dist/components/LogOut.d.ts +8 -0
- package/dist/components/LogOut.d.ts.map +1 -0
- package/dist/components/ManageChecks.d.ts +8 -0
- package/dist/components/ManageChecks.d.ts.map +1 -0
- package/dist/components/ManageUsers.d.ts +10 -0
- package/dist/components/ManageUsers.d.ts.map +1 -0
- package/dist/components/MergeExons.d.ts +15 -0
- package/dist/components/MergeExons.d.ts.map +1 -0
- package/dist/components/MergeTranscripts.d.ts +15 -0
- package/dist/components/MergeTranscripts.d.ts.map +1 -0
- package/dist/components/OntologyTermAutocomplete.d.ts +25 -0
- package/dist/components/OntologyTermAutocomplete.d.ts.map +1 -0
- package/dist/components/OntologyTermMultiSelect.d.ts +12 -0
- package/dist/components/OntologyTermMultiSelect.d.ts.map +1 -0
- package/dist/components/OpenLocalFile.d.ts +15 -0
- package/dist/components/OpenLocalFile.d.ts.map +1 -0
- package/dist/components/SplitExon.d.ts +15 -0
- package/dist/components/SplitExon.d.ts.map +1 -0
- package/dist/components/ViewChangeLog.d.ts +8 -0
- package/dist/components/ViewChangeLog.d.ts.map +1 -0
- package/dist/components/ViewCheckResults.d.ts +8 -0
- package/dist/components/ViewCheckResults.d.ts.map +1 -0
- package/dist/components/index.d.ts +21 -0
- package/dist/components/index.d.ts.map +1 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts +6 -0
- package/dist/extensions/annotationFromJBrowseFeature.d.ts.map +1 -0
- package/dist/extensions/annotationFromPileup.d.ts +3 -0
- package/dist/extensions/annotationFromPileup.d.ts.map +1 -0
- package/dist/extensions/index.d.ts +3 -0
- package/dist/extensions/index.d.ts.map +1 -0
- package/dist/index.esm.js +843 -1330
- package/dist/index.esm.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.development.js +919 -1455
- package/dist/jbrowse-plugin-apollo.cjs.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.cjs.production.min.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.development.js +46351 -63687
- package/dist/jbrowse-plugin-apollo.umd.development.js.map +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js +1 -1
- package/dist/jbrowse-plugin-apollo.umd.production.min.js.map +1 -1
- package/dist/makeDisplayComponent.d.ts +9 -0
- package/dist/makeDisplayComponent.d.ts.map +1 -0
- package/dist/menus/index.d.ts +2 -0
- package/dist/menus/index.d.ts.map +1 -0
- package/dist/menus/topLevelMenu.d.ts +3 -0
- package/dist/menus/topLevelMenu.d.ts.map +1 -0
- package/dist/menus/topLevelMenuAdmin.d.ts +3 -0
- package/dist/menus/topLevelMenuAdmin.d.ts.map +1 -0
- package/dist/session/index.d.ts +2 -0
- package/dist/session/index.d.ts.map +1 -0
- package/dist/types.d.ts +10 -0
- package/dist/types.d.ts.map +1 -0
- package/dist/util/annotationFeatureUtils.d.ts +7 -0
- package/dist/util/annotationFeatureUtils.d.ts.map +1 -0
- package/dist/util/copyToClipboard.d.ts +2 -0
- package/dist/util/copyToClipboard.d.ts.map +1 -0
- package/dist/util/glyphUtils.d.ts +31 -0
- package/dist/util/glyphUtils.d.ts.map +1 -0
- package/dist/util/index.d.ts +10 -0
- package/dist/util/index.d.ts.map +1 -0
- package/dist/util/loadAssemblyIntoClient.d.ts +5 -0
- package/dist/util/loadAssemblyIntoClient.d.ts.map +1 -0
- package/dist/util/mouseEventsUtils.d.ts +25 -0
- package/dist/util/mouseEventsUtils.d.ts.map +1 -0
- package/package.json +48 -25
- package/src/ApolloInternetAccount/components/AuthTypeSelector.tsx +7 -2
- package/src/ApolloInternetAccount/components/LoginButtons.tsx +1 -1
- package/src/ApolloInternetAccount/configSchema.ts +1 -1
- package/src/ApolloInternetAccount/model.ts +13 -6
- package/src/ApolloJobModel.ts +3 -3
- package/src/ApolloRefNameAliasAdapter/ApolloRefNameAliasAdapter.ts +2 -2
- package/src/ApolloSequenceAdapter/ApolloSequenceAdapter.ts +2 -2
- package/src/ApolloTextSearchAdapter/ApolloTextSearchAdapter.ts +28 -5
- package/src/BackendDrivers/BackendDriver.ts +8 -8
- package/src/BackendDrivers/CollaborationServerDriver.ts +6 -6
- package/src/BackendDrivers/DesktopFileDriver.ts +4 -4
- package/src/BackendDrivers/InMemoryFileDriver.ts +5 -8
- package/src/ChangeManager.ts +8 -3
- package/src/FeatureDetailsWidget/ApolloFeatureDetailsWidget.tsx +3 -3
- package/src/FeatureDetailsWidget/ApolloTranscriptDetailsWidget.tsx +7 -7
- package/src/FeatureDetailsWidget/AttributeKey.tsx +1 -1
- package/src/FeatureDetailsWidget/AttributeKeySelector.tsx +1 -1
- package/src/FeatureDetailsWidget/Attributes.tsx +4 -4
- package/src/FeatureDetailsWidget/BasicInformation.tsx +3 -3
- package/src/FeatureDetailsWidget/DefaultAttributeEditor.tsx +1 -1
- package/src/FeatureDetailsWidget/FeatureDetailsNavigation.tsx +2 -2
- package/src/FeatureDetailsWidget/Sequence.tsx +3 -3
- package/src/FeatureDetailsWidget/TranscriptSequence.tsx +2 -2
- package/src/FeatureDetailsWidget/TranscriptWidgetEditLocation.tsx +3 -6
- package/src/FeatureDetailsWidget/TranscriptWidgetSummary.tsx +1 -1
- package/src/FeatureDetailsWidget/model.ts +3 -3
- package/src/LinearApolloDisplay/components/CheckResultWarnings.tsx +2 -2
- package/src/LinearApolloDisplay/components/LinearApolloDisplay.tsx +6 -4
- package/src/LinearApolloDisplay/glyphs/BoxGlyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/GeneGlyph.ts +56 -30
- package/src/LinearApolloDisplay/glyphs/GenericChildGlyph.ts +6 -6
- package/src/LinearApolloDisplay/glyphs/Glyph.ts +7 -7
- package/src/LinearApolloDisplay/glyphs/util.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloDisplay/stateModel/layouts.ts +4 -4
- package/src/LinearApolloDisplay/stateModel/mouseEvents.ts +6 -6
- package/src/LinearApolloDisplay/stateModel/rendering.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/components/LinearApolloReferenceSequenceDisplay.tsx +4 -2
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceOverlay.ts +4 -4
- package/src/LinearApolloReferenceSequenceDisplay/drawSequenceTrack.ts +3 -3
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/base.ts +11 -8
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloReferenceSequenceDisplay/stateModel/rendering.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/components/LinearApolloSixFrameDisplay.tsx +17 -9
- package/src/LinearApolloSixFrameDisplay/components/TrackLines.tsx +1 -1
- package/src/LinearApolloSixFrameDisplay/glyphs/GeneGlyph.ts +36 -23
- package/src/LinearApolloSixFrameDisplay/glyphs/Glyph.ts +6 -6
- package/src/LinearApolloSixFrameDisplay/stateModel/base.ts +17 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/index.ts +2 -2
- package/src/LinearApolloSixFrameDisplay/stateModel/layouts.ts +12 -8
- package/src/LinearApolloSixFrameDisplay/stateModel/mouseEvents.ts +11 -10
- package/src/LinearApolloSixFrameDisplay/stateModel/rendering.ts +3 -3
- package/src/OntologyManager/OntologyStore/fulltext.test.ts +1 -1
- package/src/OntologyManager/OntologyStore/fulltext.ts +11 -4
- package/src/OntologyManager/OntologyStore/index.test.ts +3 -0
- package/src/OntologyManager/OntologyStore/indexeddb-schema.ts +6 -6
- package/src/OntologyManager/OntologyStore/indexeddb-storage.ts +2 -1
- package/src/OntologyManager/index.ts +4 -4
- package/src/OntologyManager/util.ts +1 -1
- package/src/TabularEditor/HybridGrid/ChangeHandling.ts +2 -2
- package/src/TabularEditor/HybridGrid/Feature.tsx +6 -6
- package/src/TabularEditor/HybridGrid/FeatureAttributes.tsx +2 -2
- package/src/TabularEditor/HybridGrid/Highlight.tsx +1 -1
- package/src/TabularEditor/HybridGrid/HybridGrid.tsx +2 -2
- package/src/TabularEditor/HybridGrid/NumberCell.tsx +1 -1
- package/src/TabularEditor/HybridGrid/ToolBar.tsx +3 -2
- package/src/TabularEditor/HybridGrid/featureContextMenuItems.ts +26 -4
- package/src/TabularEditor/TabularEditorPane.tsx +1 -1
- package/src/TabularEditor/model.ts +2 -2
- package/src/TabularEditor/types.ts +2 -2
- package/src/components/AddAssembly.tsx +61 -42
- package/src/components/AddAssemblyAliases.tsx +5 -5
- package/src/components/AddChildFeature.tsx +3 -3
- package/src/components/AddFeature.tsx +4 -4
- package/src/components/AddRefSeqAliases.tsx +7 -7
- package/src/components/CopyFeature.tsx +8 -8
- package/src/components/CreateApolloAnnotation.tsx +5 -5
- package/src/components/DeleteAssembly.tsx +8 -8
- package/src/components/DeleteFeature.tsx +4 -4
- package/src/components/Dialog.tsx +1 -1
- package/src/components/DownloadGFF3.tsx +8 -8
- package/src/components/DuplicateTranscript.tsx +132 -0
- package/src/components/FilterFeatures.tsx +1 -1
- package/src/components/FilterTranscripts.tsx +1 -1
- package/src/components/ImportFeatures.tsx +51 -33
- package/src/components/LogOut.tsx +4 -4
- package/src/components/ManageChecks.tsx +8 -8
- package/src/components/ManageUsers.tsx +18 -26
- package/src/components/MergeExons.tsx +4 -4
- package/src/components/MergeTranscripts.tsx +4 -4
- package/src/components/OntologyTermAutocomplete.tsx +14 -4
- package/src/components/OntologyTermMultiSelect.tsx +12 -5
- package/src/components/OpenLocalFile.tsx +2 -2
- package/src/components/SplitExon.tsx +6 -6
- package/src/components/ViewChangeLog.tsx +8 -8
- package/src/components/ViewCheckResults.tsx +4 -4
- package/src/components/index.ts +1 -0
- package/src/config.ts +1 -1
- package/src/extensions/annotationFromJBrowseFeature.ts +29 -24
- package/src/extensions/annotationFromPileup.ts +8 -6
- package/src/index.ts +25 -1
- package/src/makeDisplayComponent.tsx +8 -5
- package/src/menus/topLevelMenu.ts +4 -4
- package/src/menus/topLevelMenuAdmin.ts +4 -4
- package/src/session/ClientDataStore.ts +20 -15
- package/src/session/session.ts +30 -19
- package/src/types.ts +10 -4
- package/src/util/annotationFeatureUtils.ts +1 -1
- package/src/util/displayUtils.ts +3 -3
- package/src/util/glyphUtils.ts +10 -10
- package/src/util/index.ts +4 -4
- package/src/util/loadAssemblyIntoClient.ts +4 -4
- package/src/util/mouseEventsUtils.ts +2 -2
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export declare function LogOut({ handleClose, session }: DeleteAssemblyProps): import("react/jsx-runtime").JSX.Element;
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{"version":3,"file":"LogOut.d.ts","sourceRoot":"","sources":["../../src/components/LogOut.tsx"],"names":[],"mappings":"AAcA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,mBAAmB;IAC3B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,wBAAgB,MAAM,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,mBAAmB,2CAkFnE"}
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import type { ApolloSessionModel } from '../session';
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export declare function ManageChecks({ handleClose, session }: ManageChecksProps): import("react/jsx-runtime").JSX.Element;
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{"version":3,"file":"ManageChecks.d.ts","sourceRoot":"","sources":["../../src/components/ManageChecks.tsx"],"names":[],"mappings":"AA6BA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,iBAAiB;IACzB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAaD,wBAAgB,YAAY,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,iBAAiB,2CAqOvE"}
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{"version":3,"file":"ManageUsers.d.ts","sourceRoot":"","sources":["../../src/components/ManageUsers.tsx"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAapD,UAAU,gBAAgB;IACxB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,aAAa,CAAA;CAC7B;AAED,wBAAgB,WAAW,CAAC,EAC1B,aAAa,EACb,WAAW,EACX,OAAO,GACR,EAAE,gBAAgB,2CAyLlB"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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import type { ApolloSessionModel } from '../session';
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interface MergeExonsProps {
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handleClose(): void;
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export declare function MergeExons({ changeManager, handleClose, selectedFeature, setSelectedFeature, sourceAssemblyId, sourceFeature, }: MergeExonsProps): import("react/jsx-runtime").JSX.Element;
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{"version":3,"file":"MergeExons.d.ts","sourceRoot":"","sources":["../../src/components/MergeExons.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAiB/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,eAAe;IACvB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AA2DD,wBAAgB,UAAU,CAAC,EACzB,aAAa,EACb,WAAW,EACX,eAAe,EACf,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,eAAe,2CA8FjB"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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interface MergeTranscriptsProps {
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}
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export declare function MergeTranscripts({ changeManager, handleClose, selectedFeature, session, setSelectedFeature, sourceAssemblyId, sourceFeature, }: MergeTranscriptsProps): import("react/jsx-runtime").JSX.Element;
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{"version":3,"file":"MergeTranscripts.d.ts","sourceRoot":"","sources":["../../src/components/MergeTranscripts.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAiB/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,qBAAqB;IAC7B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AA0CD,wBAAgB,gBAAgB,CAAC,EAC/B,aAAa,EACb,WAAW,EACX,eAAe,EACf,OAAO,EACP,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,qBAAqB,2CAoGvB"}
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import { type AutocompleteRenderInputParams } from '@mui/material';
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import React from 'react';
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import { type OntologyTerm } from '../OntologyManager';
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import type OntologyStore from '../OntologyManager/OntologyStore';
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interface OntologyTermAutocompleteProps {
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session: ApolloSessionModel;
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ontologyName: string;
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value: string;
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error?: boolean;
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filterTerms?: (term: OntologyTerm) => boolean;
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fetchValidTerms?: (ontologyStore: OntologyStore, signal: AbortSignal) => Promise<OntologyTerm[] | undefined>;
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includeDeprecated?: boolean;
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}
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export declare function OntologyTermAutocomplete({ fetchValidTerms, filterTerms: filterTermsProp, includeDeprecated, onChange, ontologyName, ontologyVersion, renderInput, session, style, value: valueString, }: OntologyTermAutocompleteProps): import("react/jsx-runtime").JSX.Element;
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export {};
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{"version":3,"file":"OntologyTermAutocomplete.d.ts","sourceRoot":"","sources":["../../src/components/OntologyTermAutocomplete.tsx"],"names":[],"mappings":"AAIA,OAAO,EAEL,KAAK,6BAA6B,EAEnC,MAAM,eAAe,CAAA;AACtB,OAAO,KAA2C,MAAM,OAAO,CAAA;AAE/D,OAAO,EAAE,KAAK,YAAY,EAAgB,MAAM,oBAAoB,CAAA;AACpE,OAAO,KAAK,aAAa,MAAM,kCAAkC,CAAA;AACjE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAEpD,UAAU,6BAA6B;IACrC,OAAO,EAAE,kBAAkB,CAAA;IAC3B,YAAY,EAAE,MAAM,CAAA;IACpB,eAAe,CAAC,EAAE,MAAM,CAAA;IACxB,KAAK,EAAE,MAAM,CAAA;IACb,KAAK,CAAC,EAAE,OAAO,CAAA;IACf,WAAW,CAAC,EAAE,CAAC,IAAI,EAAE,YAAY,KAAK,OAAO,CAAA;IAC7C,eAAe,CAAC,EAAE,CAChB,aAAa,EAAE,aAAa,EAC5B,MAAM,EAAE,WAAW,KAChB,OAAO,CAAC,YAAY,EAAE,GAAG,SAAS,CAAC,CAAA;IACxC,KAAK,CAAC,EAAE,KAAK,CAAC,aAAa,CAAA;IAC3B,WAAW,CAAC,EAAE,CACZ,MAAM,EAAE,6BAA6B,GAAG;QACtC,KAAK,CAAC,EAAE,OAAO,CAAA;QACf,YAAY,CAAC,EAAE,MAAM,CAAA;KACtB,KACE,KAAK,CAAC,SAAS,CAAA;IACpB,QAAQ,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,KAAK,IAAI,CAAA;IACzE,iDAAiD;IACjD,iBAAiB,CAAC,EAAE,OAAO,CAAA;CAC5B;AAED,wBAAgB,wBAAwB,CAAC,EACvC,eAAe,EACf,WAAW,EAAE,eAAe,EAC5B,iBAAiB,EACjB,QAAQ,EACR,YAAY,EACZ,eAAe,EACf,WAAW,EACX,OAAO,EACP,KAAK,EACL,KAAK,EAAE,WAAW,GACnB,EAAE,6BAA6B,2CAqJ/B"}
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import type { ApolloSessionModel } from '../session';
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export declare function OntologyTermMultiSelect({ includeDeprecated, onChange, ontologyName, ontologyVersion, session, value: initialValue, label, }: {
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session: ApolloSessionModel;
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value: string[];
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ontologyName: string;
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ontologyVersion?: string;
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/** if true, include deprecated/obsolete terms */
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includeDeprecated?: boolean;
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onChange(newValue: string[]): void;
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label?: string;
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}): import("react/jsx-runtime").JSX.Element | null;
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{"version":3,"file":"OntologyTermMultiSelect.d.ts","sourceRoot":"","sources":["../../src/components/OntologyTermMultiSelect.tsx"],"names":[],"mappings":"AA2BA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAuFpD,wBAAgB,uBAAuB,CAAC,EACtC,iBAAiB,EACjB,QAAQ,EACR,YAAY,EACZ,eAAe,EACf,OAAO,EACP,KAAK,EAAE,YAAY,EACnB,KAAK,GACN,EAAE;IACD,OAAO,EAAE,kBAAkB,CAAA;IAC3B,KAAK,EAAE,MAAM,EAAE,CAAA;IACf,YAAY,EAAE,MAAM,CAAA;IACpB,eAAe,CAAC,EAAE,MAAM,CAAA;IACxB,iDAAiD;IACjD,iBAAiB,CAAC,EAAE,OAAO,CAAA;IAC3B,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;IAClC,KAAK,CAAC,EAAE,MAAM,CAAA;CACf,kDAiKA"}
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import type { InMemoryFileDriver } from '../BackendDrivers';
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import type { ApolloSessionModel } from '../session';
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interface OpenLocalFileProps {
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session: ApolloSessionModel;
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handleClose(): void;
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inMemoryFileDriver: InMemoryFileDriver;
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}
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export interface RefSeqInterface {
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refName: string;
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uniqueId: string;
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aliases?: string[];
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}
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export declare function OpenLocalFile({ handleClose, session }: OpenLocalFileProps): import("react/jsx-runtime").JSX.Element;
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export {};
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//# sourceMappingURL=OpenLocalFile.d.ts.map
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{"version":3,"file":"OpenLocalFile.d.ts","sourceRoot":"","sources":["../../src/components/OpenLocalFile.tsx"],"names":[],"mappings":"AAkBA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAA;AAC3D,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAKpD,UAAU,kBAAkB;IAC1B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,kBAAkB,EAAE,kBAAkB,CAAA;CACvC;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAA;IACf,QAAQ,EAAE,MAAM,CAAA;IAChB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAA;CACnB;AAED,wBAAgB,aAAa,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,kBAAkB,2CAwJzE"}
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import type { AnnotationFeature } from '@apollo-annotation/mst';
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import type { ChangeManager } from '../ChangeManager';
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import type { ApolloSessionModel } from '../session';
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interface SplitExonProps {
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session: ApolloSessionModel;
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handleClose(): void;
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sourceFeature: AnnotationFeature;
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sourceAssemblyId: string;
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changeManager: ChangeManager;
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selectedFeature?: AnnotationFeature;
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setSelectedFeature(feature?: AnnotationFeature): void;
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}
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export declare function SplitExon({ changeManager, handleClose, selectedFeature, setSelectedFeature, sourceAssemblyId, sourceFeature, }: SplitExonProps): import("react/jsx-runtime").JSX.Element;
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export {};
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{"version":3,"file":"SplitExon.d.ts","sourceRoot":"","sources":["../../src/components/SplitExon.tsx"],"names":[],"mappings":"AAEA,OAAO,KAAK,EACV,iBAAiB,EAElB,MAAM,wBAAwB,CAAA;AAY/B,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AACrD,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAIpD,UAAU,cAAc;IACtB,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;IACnB,aAAa,EAAE,iBAAiB,CAAA;IAChC,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,aAAa,CAAA;IAC5B,eAAe,CAAC,EAAE,iBAAiB,CAAA;IACnC,kBAAkB,CAAC,OAAO,CAAC,EAAE,iBAAiB,GAAG,IAAI,CAAA;CACtD;AA2BD,wBAAgB,SAAS,CAAC,EACxB,aAAa,EACb,WAAW,EACX,eAAe,EACf,kBAAkB,EAClB,gBAAgB,EAChB,aAAa,GACd,EAAE,cAAc,2CAqEhB"}
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@@ -0,0 +1,8 @@
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import type { ApolloSessionModel } from '../session';
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interface ViewChangeLogProps {
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session: ApolloSessionModel;
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handleClose(): void;
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}
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export declare function ViewChangeLog({ handleClose, session }: ViewChangeLogProps): import("react/jsx-runtime").JSX.Element;
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export {};
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//# sourceMappingURL=ViewChangeLog.d.ts.map
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{"version":3,"file":"ViewChangeLog.d.ts","sourceRoot":"","sources":["../../src/components/ViewChangeLog.tsx"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,kBAAkB;IAC1B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAYD,wBAAgB,aAAa,CAAC,EAAE,WAAW,EAAE,OAAO,EAAE,EAAE,kBAAkB,2CA+IzE"}
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@@ -0,0 +1,8 @@
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import type { ApolloSessionModel } from '../session';
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interface ViewCheckResultsProps {
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session: ApolloSessionModel;
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handleClose(): void;
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}
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export declare function ViewCheckResults({ handleClose, session, }: ViewCheckResultsProps): import("react/jsx-runtime").JSX.Element;
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export {};
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//# sourceMappingURL=ViewCheckResults.d.ts.map
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{"version":3,"file":"ViewCheckResults.d.ts","sourceRoot":"","sources":["../../src/components/ViewCheckResults.tsx"],"names":[],"mappings":"AAyBA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAMpD,UAAU,qBAAqB;IAC7B,OAAO,EAAE,kBAAkB,CAAA;IAC3B,WAAW,IAAI,IAAI,CAAA;CACpB;AAED,wBAAgB,gBAAgB,CAAC,EAC/B,WAAW,EACX,OAAO,GACR,EAAE,qBAAqB,2CAkHvB"}
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@@ -0,0 +1,21 @@
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1
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+
export * from './AddAssembly';
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export * from './AddAssemblyAliases';
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export * from './AddChildFeature';
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export * from './AddFeature';
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export * from './CopyFeature';
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export * from './DeleteAssembly';
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export * from './DeleteFeature';
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export * from './DownloadGFF3';
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export * from './ImportFeatures';
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export * from './LogOut';
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export * from './ManageChecks';
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export * from './ManageUsers';
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export * from './MergeExons';
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export * from './MergeTranscripts';
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export * from './OpenLocalFile';
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16
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export * from './ViewChangeLog';
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export * from './AddRefSeqAliases';
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+
export * from './ViewCheckResults';
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export * from './SplitExon';
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export * from './DuplicateTranscript';
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//# sourceMappingURL=index.d.ts.map
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1
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/components/index.ts"],"names":[],"mappings":"AAAA,cAAc,eAAe,CAAA;AAC7B,cAAc,sBAAsB,CAAA;AACpC,cAAc,mBAAmB,CAAA;AACjC,cAAc,cAAc,CAAA;AAC5B,cAAc,eAAe,CAAA;AAC7B,cAAc,kBAAkB,CAAA;AAChC,cAAc,iBAAiB,CAAA;AAC/B,cAAc,gBAAgB,CAAA;AAC9B,cAAc,kBAAkB,CAAA;AAChC,cAAc,UAAU,CAAA;AACxB,cAAc,gBAAgB,CAAA;AAC9B,cAAc,eAAe,CAAA;AAC7B,cAAc,cAAc,CAAA;AAC5B,cAAc,oBAAoB,CAAA;AAClC,cAAc,iBAAiB,CAAA;AAC/B,cAAc,iBAAiB,CAAA;AAC/B,cAAc,oBAAoB,CAAA;AAClC,cAAc,oBAAoB,CAAA;AAClC,cAAc,aAAa,CAAA;AAC3B,cAAc,uBAAuB,CAAA"}
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@@ -0,0 +1,6 @@
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1
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+
import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst';
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2
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+
import type { PluggableElementType } from '@jbrowse/core/pluggableElementTypes';
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+
import type { Feature } from '@jbrowse/core/util/simpleFeature';
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4
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+
export declare function jbrowseFeatureToAnnotationFeature(feature: Feature, refSeqId: string): AnnotationFeatureSnapshot;
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5
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+
export declare function annotationFromJBrowseFeature(pluggableElement: PluggableElementType): PluggableElementType;
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//# sourceMappingURL=annotationFromJBrowseFeature.d.ts.map
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1
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{"version":3,"file":"annotationFromJBrowseFeature.d.ts","sourceRoot":"","sources":["../../src/extensions/annotationFromJBrowseFeature.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAA;AAIvE,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,qCAAqC,CAAA;AAO/E,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,kCAAkC,CAAA;AAuC/D,wBAAgB,iCAAiC,CAC/C,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,MAAM,GACf,yBAAyB,CAE3B;AAyBD,wBAAgB,4BAA4B,CAC1C,gBAAgB,EAAE,oBAAoB,wBA6FvC"}
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@@ -0,0 +1 @@
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|
1
|
+
{"version":3,"file":"annotationFromPileup.d.ts","sourceRoot":"","sources":["../../src/extensions/annotationFromPileup.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAEV,oBAAoB,EACrB,MAAM,qCAAqC,CAAA;AAwB5C,wBAAgB,oBAAoB,CAAC,gBAAgB,EAAE,oBAAoB,wBAwL1E"}
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@@ -0,0 +1 @@
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1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/extensions/index.ts"],"names":[],"mappings":"AAAA,cAAc,wBAAwB,CAAA;AACtC,cAAc,gCAAgC,CAAA"}
|