@antomanc/aginit 0.1.0 → 0.2.0

package/dist/config/defaults.js

@@ -1,9 +1,43 @@
+/**
+ * The stable skill set from mattpocock/skills installed by default:
+ * every skill in the `engineering` and `productivity` categories.
+ *
+ * The `misc` (rarely used) and `in-progress` categories are deliberately
+ * excluded. Re-evaluate when the upstream repository reshuffles categories.
+ */
+export const MATT_POCOCK_SKILLS = [
+    // engineering
+    'ask-matt',
+    'code-review',
+    'codebase-design',
+    'diagnosing-bugs',
+    'domain-modeling',
+    'grill-with-docs',
+    'implement',
+    'implement-spec',
+    'improve-codebase-architecture',
+    'pr',
+    'prototype',
+    'research',
+    'retro',
+    'setup-matt-pocock-skills',
+    'tdd',
+    'to-spec',
+    'to-tickets',
+    'triage',
+    'wayfinder',
+    'wizard',
+    // productivity
+    'grill-me',
+    'grilling',
+    'handoff',
+    'teach',
+    'to-questionnaire',
+    'wait-what',
+    'writing-for-agents'
+];
 export function getDefaultConfig(name, preset, options = {}) {
-    const specWorkflow = !!options.specWorkflow;
     const packageManager = options.packageManager || 'pnpm';
-    const mattSkills = specWorkflow
-        ? ['tdd', 'code-review', 'diagnosing-bugs', 'to-spec', 'to-tickets', 'implement-spec']
-        : ['tdd', 'code-review', 'diagnosing-bugs'];
     switch (preset) {
         case 'web': {
             const framework = options.framework || 'none';
@@ -19,11 +53,14 @@ export function getDefaultConfig(name, preset, options = {}) {
                     secondary: 'codex'
                 },
                 skills: {
-                    workflow: specWorkflow ? 'spec' : 'minimal',
                     sources: [
                         {
                             package: 'mattpocock/skills',
-                            skills: mattSkills
+                            skills: [...MATT_POCOCK_SKILLS]
+                        },
+                        {
+                            package: 'blader/humanizer',
+                            skills: ['humanizer']
                         },
                         {
                             package: 'pbakaus/impeccable',
@@ -61,11 +98,14 @@ export function getDefaultConfig(name, preset, options = {}) {
                     secondary: 'codex'
                 },
                 skills: {
-                    workflow: specWorkflow ? 'spec' : 'minimal',
                     sources: [
                         {
                             package: 'mattpocock/skills',
-                            skills: mattSkills
+                            skills: [...MATT_POCOCK_SKILLS]
+                        },
+                        {
+                            package: 'blader/humanizer',
+                            skills: ['humanizer']
                         }
                     ]
                 },
@@ -95,11 +135,14 @@ export function getDefaultConfig(name, preset, options = {}) {
                     secondary: 'codex'
                 },
                 skills: {
-                    workflow: specWorkflow ? 'spec' : 'minimal',
                     sources: [
                         {
                             package: 'mattpocock/skills',
-                            skills: mattSkills
+                            skills: [...MATT_POCOCK_SKILLS]
+                        },
+                        {
+                            package: 'blader/humanizer',
+                            skills: ['humanizer']
                         }
                     ]
                 },
@@ -119,4 +162,30 @@ export function getDefaultConfig(name, preset, options = {}) {
             };
     }
 }
+/** The skill selections that older versions of aginit wrote as defaults. */
+const LEGACY_MATT_SKILL_SELECTIONS = [
+    ['tdd', 'code-review', 'diagnosing-bugs'],
+    ['tdd', 'code-review', 'diagnosing-bugs', 'to-spec', 'to-tickets', 'implement-spec']
+];
+function matchesLegacySelection(skills) {
+    return LEGACY_MATT_SKILL_SELECTIONS.some((selection) => selection.length === skills.length && selection.every((skill) => skills.includes(skill)));
+}
+/**
+ * Bring a saved `skills` section forward to the current standard: install the
+ * full stable Matt Pocock set and drop the retired workflow selector.
+ *
+ * Only the exact selections aginit used to write are migrated, so a project
+ * whose skill list was narrowed by hand keeps the list its author chose.
+ */
+export function upgradeLegacySkillConfig(skills) {
+    const sources = skills.sources.map((source) => source.package === 'mattpocock/skills' && matchesLegacySelection(source.skills)
+        ? { ...source, skills: [...MATT_POCOCK_SKILLS] }
+        : source);
+    const migrated = sources.some((source, index) => source !== skills.sources[index]);
+    if (!migrated)
+        return skills;
+    const upgraded = { ...skills, sources };
+    delete upgraded.workflow;
+    return upgraded;
+}
 //# sourceMappingURL=defaults.js.map

package/dist/config/defaults.js.map

@@ -1 +1 @@
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package/dist/config/schema.d.ts

@@ -16,6 +16,11 @@ export interface AginitConfig {
         secondary: string;
     };
     skills: {
+        /**
+         * @deprecated Legacy selector from when only a subset of skills was
+         * installed. All standard skills are installed now, so this field is no
+         * longer written. It is still accepted so existing configs keep loading.
+         */
         workflow?: 'minimal' | 'spec';
         sources: SkillSourceConfig[];
     };

package/dist/config/schema.d.ts.map

@@ -1 +1 @@
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package/dist/config/schema.js.map

@@ -1 +1 @@
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+{"version":3,"file":"schema.js","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AA8CA,MAAM,CAAC,MAAM,sBAAsB,GAAG,oBAAoB,CAAC;AAC3D,MAAM,CAAC,MAAM,sBAAsB,GAAG,gBAAgB,CAAC;AACvD,MAAM,CAAC,MAAM,kBAAkB,GAAG,sBAAsB,CAAC"}

package/dist/config/validation.d.ts

@@ -1,7 +1,7 @@
 import { AginitConfig } from './schema.js';
-export declare const PRESETS: readonly ["web", "cli", "generic"];
-export declare const FRAMEWORKS: readonly ["none", "vite", "next", "existing"];
-export declare const SUPPORTED_PACKAGE_MANAGERS: readonly ["pnpm", "npm", "yarn", "bun"];
+export declare const PRESETS: readonly ['web', 'cli', 'generic'];
+export declare const FRAMEWORKS: readonly ['none', 'vite', 'next', 'existing'];
+export declare const SUPPORTED_PACKAGE_MANAGERS: readonly ['pnpm', 'npm', 'yarn', 'bun'];
 export declare function isRecord(value: unknown): value is Record<string, any>;
 export declare function validateProjectName(name: string): void;
 export declare function validateUpstreamArgument(value: unknown, label: string): asserts value is string;

package/dist/config/validation.d.ts.map

@@ -1 +1 @@
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package/dist/presets/adr.js.map

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package/dist/utils/fs.js.map

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package/dist/utils/logger.d.ts.map

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package/dist/utils/shell.js.map

@@ -1 +1 @@
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+{"version":3,"file":"shell.js","sourceRoot":"","sources":["../../src/utils/shell.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,SAAS,EAAE,MAAM,WAAW,CAAC;AACtC,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAErC,MAAM,aAAa,GAAG,SAAS,CAAC,QAAQ,CAAC,CAAC;AAiB1C,SAAS,iBAAiB,CAAC,OAAe;IACxC,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE,CAAC;QACjC,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;IACjD,CAAC;IACD,MAAM,OAAO,GAAG,CAAC,IAAY,EAAE,EAAE,CAAC,eAAe,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC7D,IAAI,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;QAC1B,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,OAAO,EAAE,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;IAC5D,CAAC;IACD,MAAM,QAAQ,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,qBAAqB,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAC3F,MAAM,IAAI,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAC5E,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,QAAQ,GAAG,GAAG,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;QAC3C,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;YAC3B,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,GAAG,OAAO,GAAG,GAAG,EAAE,CAAC,CAAC;YAC1D,IAAI,CAAC;gBACH,IAAI,EAAE,CAAC,UAAU,CAAC,SAAS,CAAC,IAAI,EAAE,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC;oBAChE,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,CAAC,SAAS,CAAC,EAAE,CAAC;gBAChE,CAAC;YACH,CAAC;YAAC,MAAM,CAAC;gBACP,WAAW;YACb,CAAC;QACH,CAAC;IACH,CAAC;IACD,OAAO,EAAE,UAAU,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;AACjD,CAAC;AAED,qFAAqF;AACrF,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,UAAkB,EAClB,IAAI,GAAa,EAAE,EACnB,OAAO,GAAe,EAAE;IAExB,MAAM,EACJ,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,EACnB,GAAG,GAAG,OAAO,CAAC,GAAG,EACjB,MAAM,GAAG,KAAK,EACd,MAAM,GAAG,KAAK,EACd,OAAO,GAAG,OAAO,EAClB,GAAG,OAAO,CAAC;IAEZ,IAAI,MAAM,EAAE,CAAC;QACX,MAAM,CAAC,GAAG,CACR,4BAA4B,CAAC,UAAU,EAAE,GAAG,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,GAAG,CACxG,CAAC;QACF,OAAO,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC;IAC3D,CAAC;IAED,IAAI,CAAC;QACH,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAC,UAAU,CAAC,CAAC;QACzE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,aAAa,CAAC,SAAS,EAAE,IAAI,EAAE;YAC9D,GAAG;YACH,GAAG,EAAE,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,GAAG,GAAG,EAAE;YAC/B,SAAS,EAAE,EAAE,GAAG,IAAI,GAAG,IAAI;YAC3B,OAAO;YACP,KAAK,EAAE,OAAO;SACf,CAAC,CAAC;QACH,IAAI,CAAC,MAAM,IAAI,MAAM,CAAC,IAAI,EAAE;YAAE,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC,CAAC;QACxD,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,IAAI,EAAE,EAAE,MAAM,EAAE,MAAM,CAAC,IAAI,EAAE,EAAE,QAAQ,EAAE,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC;IACjF,CAAC;IAAC,OAAO,KAAU,EAAE,CAAC;QACpB,OAAO;YACL,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE;YACzC,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,MAAM,IAAI,KAAK,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE;YAC1D,QAAQ,EAAE,OAAO,KAAK,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YACzD,EAAE,EAAE,KAAK;SACV,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,OAAe;IACjD,IAAI,CAAC,mBAAmB,CAAC,IAAI,CAAC,OAAO,CAAC;QAAE,OAAO,KAAK,CAAC;IACrD,MAAM,SAAS,GAAG,OAAO,CAAC,QAAQ,KAAK,OAAO,CAAC;IAC/C,MAAM,QAAQ,GAAG,SAAS;QACxB,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,qBAAqB,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC;QAC3E,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;IAET,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE;QACjE,IAAI,CAAC,GAAG;YAAE,OAAO,KAAK,CAAC;QACvB,MAAM,QAAQ,GAAG,GAAG,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;QAC3C,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;YAC3B,IAAI,CAAC;gBACH,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CACpB,QAAQ,EACR,SAAS,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,GAAG,GAAG,EAAE,CAAC,CAAC,CAAC,OAAO,CACnE,CAAC;gBACF,EAAE,CAAC,UAAU,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;gBACvE,IAAI,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE;oBAAE,OAAO,IAAI,CAAC;YAC9C,CAAC;YAAC,MAAM,CAAC;gBACP,WAAW;YACb,CAAC;QACH,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC,CAAC,CAAC;AACL,CAAC"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@antomanc/aginit",
-  "version": "0.1.0",
-  "description": "Minimal, modular AI-first project bootstrapper for T3 Code, Antigravity, and Codex",
+  "version": "0.2.0",
+  "description": "Minimal, modular AI-first project bootstrapper for AI coding agents",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -19,6 +19,7 @@
     "src",
     "bin",
     "README.md",
+    "CHANGELOG.md",
     "LICENSE",
     "THIRD_PARTY_NOTICES.md"
   ],
@@ -39,7 +40,6 @@
     "agents",
     "antigravity",
     "codex",
-    "t3-code",
     "skills",
     "graft",
     "bootstrap",
@@ -47,14 +47,14 @@
   ],
   "dependencies": {
     "@clack/prompts": "^1.8.1",
-    "commander": "^12.1.0",
+    "commander": "^15.0.0",
     "picocolors": "^1.1.1"
   },
   "devDependencies": {
-    "@types/node": "^22.8.0",
-    "tsx": "^4.19.2",
-    "typescript": "^5.6.3",
-    "vitest": "^4.1.11"
+    "@types/node": "^22.20.5",
+    "tsx": "^4.23.15",
+    "typescript": "^7.0.2",
+    "vitest": "^5.0.3"
   },
   "license": "MIT",
   "engines": {
@@ -64,8 +64,9 @@
     "build": "tsc",
     "watch": "tsc --watch",
     "test": "vitest run",
-    "typecheck": "tsc --noEmit",
+    "typecheck": "tsc --noEmit && tsc --noEmit -p tsconfig.test.json",
     "check": "pnpm typecheck && pnpm test && pnpm build && pnpm audit",
+    "check:skills": "node scripts/check-skill-drift.mjs",
     "smoke": "node scripts/smoke-test.mjs"
   }
 }

package/src/adapters/agents-md.ts

@@ -31,18 +31,45 @@ export function generateAgentsMarkdown(
     testE2E = `- Test (E2E / Browser): \`${pmAdapter.runCmd('test:e2e')}\``;
   }
 
-  const selectedSkills = config.skills.sources.flatMap((source) => source.skills);
-  const engineering = selectedSkills.filter((skill) =>
-    ['tdd', 'code-review', 'diagnosing-bugs'].includes(skill)
-  );
+  // A source with an empty skill list (or `*`) installs every skill it ships.
+  const skillInstalled = (skill: string) =>
+    config.skills.sources.some(
+      (source) =>
+        source.skills.length === 0 || source.skills.includes('*') || source.skills.includes(skill)
+    );
+  const mattSkills = (() => {
+    const source = config.skills.sources.find((s) => s.package === 'mattpocock/skills');
+    if (!source) return [];
+    return source.skills.length ? source.skills : ['*'];
+  })();
+  const hasSkills = config.skills.sources.length > 0;
+
+  const specSkillNames = ['to-spec', 'to-tickets', 'implement-spec'];
+  let engineeringCapability = '';
+  if (mattSkills.includes('*')) {
+    engineeringCapability =
+      '- **Engineering**: the full Matt Pocock skill set installed in `.agents/skills/` — start with `ask-matt` to route to the right one.';
+  } else if (mattSkills.length) {
+    const engineering = mattSkills.filter((skill) => !specSkillNames.includes(skill));
+    if (engineering.length) {
+      engineeringCapability = `- **Engineering**: ${engineering.map((skill) => '`' + skill + '`').join(', ')}`;
+    }
+  }
+
+  let proseCapability = '';
+  if (skillInstalled('humanizer')) {
+    proseCapability =
+      '- **Prose & Copy**: Use `humanizer` skill to eliminate AI writing tells and refine documentation.';
+  }
+
   let uiCapability = '';
-  if (isWeb && selectedSkills.includes('impeccable')) {
+  if (isWeb && skillInstalled('impeccable')) {
     uiCapability =
       '- **UI & Design**: Use `impeccable` skill for frontend polish, design critique, and token craft.';
   }
 
   let browserCapability = '';
-  if (hasVisualAgent && selectedSkills.includes('agent-browser')) {
+  if (hasVisualAgent && skillInstalled('agent-browser')) {
     browserCapability =
       '- **Browser Verification**: Use `agent-browser` skill for interactive inspection and visual QA.';
   }
@@ -53,12 +80,11 @@ export function generateAgentsMarkdown(
       '- **Codebase Graph**: Use `graft ask "<query>" --source` or `graft map` for orientation before raw grep.';
   }
 
-  let specWorkflow = '';
-  if (config.skills.workflow === 'spec' && selectedSkills.includes('to-spec')) {
-    specWorkflow = '- **Spec & Tickets Workflow**: `to-spec`, `to-tickets`, `implement-spec`';
-  }
+  const specCapability = skillInstalled('to-spec')
+    ? '- **Spec & Tickets Workflow**: `to-spec`, `to-tickets`, `implement-spec`'
+    : '';
 
-  const sections = [
+  const sections: Array<string | undefined> = [
     `# ${config.name}`,
     '',
     `AI-first ${config.preset} project configured with \`aginit\`.`,
@@ -70,24 +96,23 @@ export function generateAgentsMarkdown(
     '',
     '## Essential Commands',
     `- Package Manager: \`${pm}\``,
-    devCommand,
-    hasCommand('build') ? `- Build: \`${pmAdapter.runCmd('build')}\`` : '',
-    hasCommand('typecheck') ? `- Typecheck: \`${pmAdapter.runCmd('typecheck')}\`` : '',
-    hasCommand('test') ? `- Test: \`${pmAdapter.runCmd('test')}\`` : '',
-    hasCommand('test:unit') ? `- Unit Test: \`${pmAdapter.runCmd('test:unit')}\`` : '',
-    testE2E,
+    devCommand || undefined,
+    hasCommand('build') ? `- Build: \`${pmAdapter.runCmd('build')}\`` : undefined,
+    hasCommand('typecheck') ? `- Typecheck: \`${pmAdapter.runCmd('typecheck')}\`` : undefined,
+    hasCommand('test') ? `- Test: \`${pmAdapter.runCmd('test')}\`` : undefined,
+    hasCommand('test:unit') ? `- Unit Test: \`${pmAdapter.runCmd('test:unit')}\`` : undefined,
+    testE2E || undefined,
     '',
     '## AI Capabilities & Skills',
-    selectedSkills.length
+    hasSkills
       ? 'Configured skills install into `.agents/skills/` (shared by Antigravity and Codex):'
       : 'Skills installation is disabled in this configuration.',
-    engineering.length
-      ? `- **Engineering**: ${engineering.map((skill) => '\`' + skill + '\`').join(', ')}`
-      : '',
-    specWorkflow,
-    uiCapability,
-    browserCapability,
-    graftCapability,
+    engineeringCapability || undefined,
+    proseCapability || undefined,
+    specCapability || undefined,
+    uiCapability || undefined,
+    browserCapability || undefined,
+    graftCapability || undefined,
     '',
     '## Bootstrap & First Session',
     'When the user asks to "bootstrap this project" or kicks off a new initiative:',
@@ -97,9 +122,11 @@ export function generateAgentsMarkdown(
     ''
   ];
 
+  // Conditional lines are `undefined` and dropped; `''` entries are the blank
+  // separators between sections and must survive.
   return (
     sections
-      .filter((s) => s !== '')
+      .filter((s): s is string => s !== undefined)
       .join('\n')
       .trim() + '\n'
   );

package/src/adapters/git.ts

@@ -33,6 +33,8 @@ blob-report/
 
 # Codebase intelligence cache (graft builds locally, git-ignored)
 /graft/
+# ripgrep hint graft writes next to that cache; regenerated by \`graft build\`
+.ignore
 `;
 
 export async function setupGit(

package/src/adapters/skills.ts

@@ -81,25 +81,28 @@ export async function installAllSkills(
 }
 
 export function getInstalledSkills(targetDir: string): string[] {
+  // The lockfile only records what the skills CLI installed through aginit;
+  // skills added by hand live on disk only, so report the union of both.
+  const installed = new Set<string>();
+
   const lockPath = path.join(targetDir, 'skills-lock.json');
   if (fileExists(lockPath)) {
     const lock = readJsonFile<SkillsLockFile>(lockPath);
-    if (lock && lock.skills) {
-      return Object.keys(lock.skills);
-    }
+    for (const name of Object.keys(lock?.skills ?? {})) installed.add(name);
   }
 
-  // Check .agents/skills directory directly
   const skillsDir = path.join(targetDir, '.agents', 'skills');
   if (fileExists(skillsDir)) {
     try {
-      return fs.readdirSync(skillsDir).filter((f) => !f.startsWith('.'));
+      for (const entry of fs.readdirSync(skillsDir)) {
+        if (!entry.startsWith('.')) installed.add(entry);
+      }
     } catch {
-      return [];
+      // Unreadable directory: keep whatever the lockfile reported.
     }
   }
 
-  return [];
+  return [...installed];
 }
 
 export async function updateSkills(

package/src/cli/doctor.ts

@@ -198,18 +198,20 @@ export async function runDoctor(targetDir: string = process.cwd()): Promise<void
 
   // 9. Installed skills check
   const installedSkills = getInstalledSkills(targetDir);
+  const skillsDisabled = projectConfig !== null && projectConfig.skills.sources.length === 0;
   checks.push({
     name: 'Local Agent Skills (.agents/skills/)',
     category: 'Project Config',
-    ok: installedSkills.length > 0,
-    detail:
-      installedSkills.length > 0
+    ok: skillsDisabled || installedSkills.length > 0,
+    detail: skillsDisabled
+      ? 'Disabled in configuration (skills.sources is empty)'
+      : installedSkills.length > 0
         ? `${installedSkills.length} skills installed: ${installedSkills.join(', ')}`
         : 'No skills found in .agents/skills/',
     suggestion:
-      installedSkills.length === 0
-        ? 'Run `aginit init` or `npx skills add ...` to install skills'
-        : undefined
+      skillsDisabled || installedSkills.length > 0
+        ? undefined
+        : 'Run `aginit init` or `npx skills add ...` to install skills'
   });
 
   // Print grouped results

package/src/cli/main.ts

@@ -1,4 +1,5 @@
 import { Command } from 'commander';
+import { readFileSync } from 'node:fs';
 import { createProject } from './new.js';
 import { initCurrentDirectory } from './init.js';
 import { runDoctor } from './doctor.js';
@@ -14,15 +15,26 @@ import {
   runInteractiveWizard
 } from './wizard.js';
 
+/**
+ * Read the version from package.json so releases only bump one place.
+ * Resolves from `src/cli/main.ts` and from `dist/cli/main.js` alike.
+ */
+function readVersion(): string {
+  try {
+    const pkg = JSON.parse(readFileSync(new URL('../../package.json', import.meta.url), 'utf8'));
+    return typeof pkg.version === 'string' ? pkg.version : '0.0.0';
+  } catch {
+    return '0.0.0';
+  }
+}
+
 export function createCliProgram(): Command {
   const program = new Command();
 
   program
     .name('aginit')
-    .description(
-      'Minimal, modular AI-first project bootstrapper for T3 Code, Antigravity, and Codex'
-    )
-    .version('0.1.0');
+    .description('Minimal, modular AI-first project bootstrapper for AI coding agents')
+    .version(readVersion());
 
   // Root action: interactive wizard when in TTY, else display help
   program.action(async () => {
@@ -40,10 +52,6 @@ export function createCliProgram(): Command {
     .option('-p, --preset <preset>', 'Project preset: web | cli | generic', 'generic')
     .option('-f, --framework <framework>', 'Web framework: none | vite | next | existing', 'none')
     .option('-m, --package-manager <pm>', 'Package manager: pnpm | npm | yarn | bun', 'pnpm')
-    .option(
-      '--spec-workflow',
-      'Include full spec and tickets skills (to-spec, to-tickets, implement-spec)'
-    )
     .option('--no-skills', 'Skip installing AI skills')
     .option('--no-graft', 'Skip codebase graph (Graft) setup')
     .option('--no-git', 'Skip git repository initialization')
@@ -53,7 +61,6 @@ export function createCliProgram(): Command {
       let finalPreset = options.preset;
       let finalFramework = options.framework;
       let finalPackageManager = options.packageManager;
-      let finalSpecWorkflow = options.specWorkflow;
 
       if (!finalName) {
         if (!isInteractive()) {
@@ -71,24 +78,18 @@ export function createCliProgram(): Command {
           packageManager:
             command.getOptionValueSource('packageManager') === 'cli'
               ? (options.packageManager as PackageManager)
-              : undefined,
-          specWorkflow:
-            command.getOptionValueSource('specWorkflow') === 'cli'
-              ? options.specWorkflow
               : undefined
         });
         finalName = answers.projectName;
         finalPreset = answers.preset;
         finalFramework = answers.framework;
         finalPackageManager = answers.packageManager;
-        finalSpecWorkflow = answers.specWorkflow;
       }
 
       const complete = await createProject(finalName, {
         preset: finalPreset as PresetType,
         framework: finalFramework as WebFramework,
         packageManager: finalPackageManager as PackageManager,
-        specWorkflow: finalSpecWorkflow,
         skills: options.skills,
         graft: options.graft,
         git: options.git,
@@ -104,10 +105,6 @@ export function createCliProgram(): Command {
     .option('-p, --preset <preset>', 'Project preset: web | cli | generic')
     .option('-f, --framework <framework>', 'Web framework: none | vite | next | existing')
     .option('-m, --package-manager <pm>', 'Package manager: pnpm | npm | yarn | bun')
-    .option(
-      '--spec-workflow',
-      'Include full spec and tickets skills (to-spec, to-tickets, implement-spec)'
-    )
     .option('--no-skills', 'Skip installing AI skills')
     .option('--no-graft', 'Skip codebase graph (Graft) setup')
     .option('--no-git', 'Skip git repository initialization')
@@ -116,32 +113,27 @@ export function createCliProgram(): Command {
       let finalPreset = options.preset;
       let finalFramework = options.framework;
       let finalPackageManager = options.packageManager;
-      let finalSpecWorkflow = options.specWorkflow;
 
       const isPresetExplicit = command.getOptionValueSource('preset') === 'cli';
       const isFrameworkExplicit = command.getOptionValueSource('framework') === 'cli';
       const isPmExplicit = command.getOptionValueSource('packageManager') === 'cli';
-      const isSpecExplicit = command.getOptionValueSource('specWorkflow') === 'cli';
 
       const savedConfig = readProjectConfig(process.cwd());
       if (isInteractive() && !isPresetExplicit && !options.dryRun && !savedConfig) {
         const answers = await promptInitProject({
           preset: isPresetExplicit ? (options.preset as PresetType) : undefined,
           framework: isFrameworkExplicit ? (options.framework as WebFramework) : undefined,
-          packageManager: isPmExplicit ? (options.packageManager as PackageManager) : undefined,
-          specWorkflow: isSpecExplicit ? options.specWorkflow : undefined
+          packageManager: isPmExplicit ? (options.packageManager as PackageManager) : undefined
         });
         finalPreset = answers.preset;
         finalFramework = answers.framework;
         finalPackageManager = answers.packageManager;
-        finalSpecWorkflow = answers.specWorkflow;
       }
 
       const complete = await initCurrentDirectory({
         preset: finalPreset as PresetType,
         framework: finalFramework as WebFramework,
         packageManager: finalPackageManager as PackageManager,
-        specWorkflow: finalSpecWorkflow,
         skills: options.skills,
         graft: options.graft,
         git: options.git,