@antomanc/aginit 0.1.0 → 0.2.0

package/CHANGELOG.md

@@ -0,0 +1,43 @@
+# Changelog
+
+## 0.2.0 — 2026-10-09
+
+### Breaking
+
+- Removed `--spec-workflow` from `aginit new` and `aginit init`, and removed the
+  wizard's "Select AI engineering workflow" prompt. The spec and tickets skills
+  are part of the standard set now, so the selector no longer had anything to
+  select.
+- `skills.workflow` is no longer written to `aginit.config.json`. Existing
+  configs that still carry it keep loading unchanged.
+
+### Changed
+
+- All 27 stable Matt Pocock skills install by default instead of the
+  `tdd` / `code-review` / `diagnosing-bugs` trio: the `engineering` and
+  `productivity` categories. The `misc` and `in-progress` categories stay out.
+- Saved configs holding an old default skill selection are upgraded on
+  `aginit init`. A skill list narrowed by hand is preserved as written.
+- AGENTS.md now lists the full standard skill set and the spec workflow.
+- Dependency updates: TypeScript 7, Vitest 5, Commander 15, tsx 4.23,
+  pnpm 12.10. `@types/node` stays on the 22.x line so the types match the
+  `engines.node >= 22.12.0` support floor.
+- Descriptions no longer mention T3 Code.
+
+### Fixed
+
+- Generated AGENTS.md separates its sections with blank lines again; only
+  inapplicable lines are dropped.
+- AGENTS.md no longer claims skills are disabled when a source installs every
+  skill it ships.
+- `aginit init` in the current directory no longer prints `cd .`.
+- `aginit doctor` no longer warns about missing skills when installation is
+  disabled in the configuration, and reports skills installed by hand even when
+  the lockfile records none.
+- `aginit --version` and the smoke test read the version from `package.json`.
+
+### Added
+
+- `pnpm typecheck` now type-checks `tests/` through `tsconfig.test.json`.
+- `pnpm check:skills` and a weekly `Skill drift` CI job that fails when a
+  standard skill disappears upstream or a new stable skill is published.

package/LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2026 Antonio Mancuso
+Copyright (c) 2026 Antonio Mancini
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

package/README.md

@@ -1,245 +1,122 @@
 # Aginit
 
-> **Public Beta (v0.1.0)** — Minimal, modular AI-first project bootstrapper for T3 Code, Antigravity, and Codex.
+Project bootstrapper for AI coding agents. Configures agent instructions, skills, a codebase graph, and test tooling using upstream tools.
+
+Beta
 
 [![CI](https://github.com/antomanc/aginit/actions/workflows/ci.yml/badge.svg)](https://github.com/antomanc/aginit/actions)
 [![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](LICENSE)
 [![npm version](https://img.shields.io/npm/v/@antomanc/aginit)](https://www.npmjs.com/package/@antomanc/aginit)
 
----
-
-## Philosophy
-
-> **“We orchestrate the tools. We don’t replace them.”**
-
-Aginit initializes software projects ready for AI-assisted development in seconds. Instead of reinventing custom agent frameworks or vendoring brittle skills, Aginit ties together best-in-class upstream capabilities into a coherent, idempotent developer workflow.
-
-- **Zero vendoring**: Skills and codebase graphs are fetched and configured directly from upstream maintainers via standard package ecosystems (`skills.sh`, `graft`).
-- **Dual-agent parity**: Antigravity and Codex share the exact same `.agents/skills` and `AGENTS.md` conventions without conflicting configurations.
-- **Conservative & idempotent**: Never overwrites existing code destructively; respects your choice of framework, toolchain, and package manager.
-
----
-
-## What Aginit Configures
-
-Every project bootstrapped with Aginit receives:
-
-1. **Upstream Skills Engine (`skills.sh`)**:
-   - Universal engineering trio: `tdd`, `code-review`, `diagnosing-bugs` (by Matt Pocock).
-   - *Optional* spec workflow: `to-spec`, `to-tickets`, `implement-spec` (`--spec-workflow`).
-   - Frontend craft & UI polish: `impeccable` (by Peter Bak-Hansen) for web presets.
-   - Interactive visual inspection: `agent-browser` (by Vercel Labs) for web presets.
-2. **Codebase Understanding (`graft`)**:
-   - Deterministic structural code graph and fast token-efficient semantic map (`graft map`, `graft ask`).
-3. **Agent Invariants (`AGENTS.md`)**:
-   - A short, non-invasive intake contract and invariant guide that agents parse immediately upon opening the repository in T3 Code.
-4. **Deterministic Testing Harness**:
-   - Vitest for instant unit testing.
-   - Playwright for browser testing when a web framework is selected. Its starter test is explicitly skipped until you supply an application URL and real assertions.
-5. **Declarative State (`aginit.config.json`)**:
-   - Versioned project manifest (`schemaVersion: "1.0.0"`) tracking active agents, skills, preset, and package manager.
-
----
-
 ## Quickstart
 
-### Prerequisites
-
-- Node.js **22.12 or newer** (use a supported Node LTS release).
-- Git and npm/npx in `PATH`; install your selected package manager before using it.
-- Internet access for official framework scaffolders and upstream skills.
-- Optional Graft CLI: `npm install -g @nanonets/graft`. Use `--no-graft` to omit it.
+Requires Node.js 22.12+, Git, npm/npx, and internet access. Install your chosen package manager before using it.
 
-### Interactive Wizard (Recommended)
-
-Simply run `aginit` or `npx @antomanc/aginit` with no arguments in your terminal to launch the interactive prompt:
+Run the interactive wizard:
 
 ```bash
-# Run directly without installation
 npx @antomanc/aginit
-
-# Or with pnpm dlx
+# or
 pnpm dlx @antomanc/aginit
-
-# Or install globally
-npm install -g @antomanc/aginit
-aginit
 ```
 
-The wizard prompts only for meaningful choices:
-1. Action: *Create brand new project* vs *Initialize in current directory*
-2. Project name (when creating a new project)
-3. Preset (`web` | `cli` | `generic`)
-4. Framework (for `web`: `none` | `vite` | `next` | `existing`)
-5. Workflow (`minimal` | `spec`)
-6. Package Manager (`pnpm (Recommended)` | `npm` | `yarn` | `bun`) — *auto-detected and preserved when initializing existing projects*
-
-### Non-Interactive / Scriptable CLI
-
-All commands accept explicit flags for automated environments and CI:
+For a global installation:
 
 ```bash
-# Create a new web project directly with pnpm
-aginit new my-web-app --preset web --framework vite --package-manager pnpm
-
-# Or with npm, yarn, or bun
-aginit new my-app --preset web --package-manager bun
-
-# Or via npx
-npx @antomanc/aginit new my-web-app --preset web
+npm install -g @antomanc/aginit
+aginit
 ```
 
-Then open the project in **T3 Code**, and tell Antigravity:
-> *"bootstrap this project"*
-
----
+The wizard lets you create a project or initialize an existing directory, then choose a preset, framework, and package manager. Existing projects retain their detected package manager.
 
-## Package Managers
-
-Aginit provides centralized package manager orchestration:
-- **Supported Managers**: `pnpm` (recommended/default), `npm`, `yarn` (Classic or modern), `bun`.
-- **New Projects**: Prompted as the final wizard step, or configured via `--package-manager <pm>`. Stored in `aginit.config.json`.
-- **Existing Projects**: Automatically detects existing lockfiles (`pnpm-lock.yaml`, `bun.lockb`, `yarn.lock`, `package-lock.json`) and preserves your manager without prompting.
-- **Official Scaffolding**: Passes the selected package manager to upstream toolchains (e.g. `--use-pnpm`, `--use-npm`, `--use-yarn`, `--use-bun` for Next.js, and package manager specific create commands for Vite).
-- **Clean Toolchains**: `pnpm-workspace.yaml` and pnpm-specific lifecycle configs are only generated when `pnpm` is the active manager.
-
----
-
-## Presets & Frameworks
-
-### 1. `web` Preset
-
-Framework-agnostic by default:
+Graft requires a separate installation. Use `--no-graft` to skip it.
 
 ```bash
-# Agnostic baseline: clean TypeScript + Vitest, zero bundler lock-in
-aginit new my-app --preset web --framework none
-
-# Official Vite scaffolding
-aginit new my-vite-app --preset web --framework vite
-
-# Official Next.js scaffolding
-aginit new my-next-app --preset web --framework next
+npm install -g @nanonets/graft
 ```
 
-*Note: With `--framework none`, Aginit does not generate dummy or failing E2E configs until an actual web target is introduced.*
-
-### 2. `cli` Preset
+## Usage
 
 ```bash
+aginit new my-app --preset web --framework vite
+aginit new my-app --preset web --framework next --package-manager npm
 aginit new my-cli --preset cli
-```
-Configures an executable Node.js/TypeScript CLI with Commander, Picocolors, and Vitest.
-
-### 3. `generic` Preset
-
-```bash
 aginit new my-repo --preset generic
-```
-Minimal AI readiness for any codebase: Git, `.agents/skills`, Graft context graph, and `AGENTS.md`.
-
----
-
-## Adding Aginit to an Existing Project
-
-Run `aginit init` inside an existing repository:
 
-```bash
-cd my-existing-project
+# Run inside an existing project
 aginit init --preset web
+
+# Preview changes
+aginit init --dry-run
+aginit new my-app --preset web --dry-run
 ```
 
-Aginit preserves application source, custom scripts, dependency versions, and existing test configurations. The web and CLI presets add missing test tooling to `package.json`; custom test runners get a separate `test:unit` script. The generic preset leaves an existing project manifest untouched.
+Supported package managers: `pnpm` (default), `npm`, `yarn`, and `bun`. Set one with `--package-manager`; the choice is saved in `aginit.config.json` and passed to framework scaffolders.
 
-Repeat `aginit init` preserves the saved preset, framework, agents, workflow, skill sources, and extension fields. Explicit options override the requested setting. Invalid JSON or configuration is reported before initialization changes files. `--no-skills` skips installation without erasing an existing configuration's sources.
+### Presets
 
----
+| Preset | Setup |
+| --- | --- |
+| `web` | TypeScript and Vitest, with optional Vite or Next.js scaffolding. Playwright is added when a web framework is selected. |
+| `cli` | Node.js/TypeScript CLI with Commander, Picocolors, and Vitest. |
+| `generic` | Git, agent instructions, skills, and Graft. Leaves an existing `package.json` untouched. |
 
-## Diagnostics (`aginit doctor`)
+The web preset supports `--framework none` (default), `vite`, `next`, or `existing`. Vite and Next.js use their official scaffolders. `none` creates a TypeScript baseline without a bundler or browser test configuration.
 
-Run the health check at any time to inspect system tooling and repository agent readiness (it may download the upstream Skills CLI through npx):
+### Agent configuration
 
-```bash
-aginit doctor
-```
+- `AGENTS.md`: project instructions shared by agents.
+- `.agents/skills/`: the 27 stable skills from Matt Pocock (engineering + productivity), and `humanizer` from Blake Robbins. Web projects also include Impeccable and agent-browser.
+- Graft: a codebase graph for `graft map` and `graft ask`.
+- `aginit.config.json`: saved preset, framework, package manager, agents, and skill sources.
 
-Checks:
-- Node.js runtime and active project package manager (`pnpm`, `npm`, `yarn`, or `bun`)
-- Git repository state
-- Global Graft CLI availability
-- Codex CLI availability (secondary reviewer)
-- Skills CLI engine functionality
-- `aginit.config.json` schema validation and package manager setting
-- `AGENTS.md` context and intake section
-- Installed `.agents/skills/` health
+The standard skill set includes the spec and tickets workflow (`to-spec`, `to-tickets`, `implement-spec`); there is no workflow selector to run. Skills from Matt Pocock's `misc` and `in-progress` buckets are left out. Use `--no-skills` to skip skill installation.
 
----
+## Existing projects
 
-## Updating Upstream Capabilities (`aginit update`)
+`aginit init` preserves application source, custom scripts, dependency versions, and existing test configurations. The web and CLI presets add missing test tooling; projects with a custom test runner receive a separate `test:unit` script.
 
-Keep your project's skills and codebase graph up to date:
+Repeated initialization preserves saved settings and extension fields. Explicit options override the corresponding settings. Invalid configuration is reported before files are changed. `--no-skills` skips installation while retaining saved skill sources.
 
-```bash
-aginit update
-```
-
-This runs the upstream project-scoped `skills update` and refreshes the Graft graph index. Disabled integrations are skipped; failed updates return a nonzero exit status.
-
----
-
-## Safety & Dry Run
+Configs written by older versions that still hold the retired default skill selection are upgraded to the current standard set, along with dropping the retired `skills.workflow` selector. A skill list narrowed by hand is preserved as written.
 
-Preview changes without touching the disk:
+## Maintenance
 
 ```bash
-aginit new test-project --preset web --dry-run
-aginit init --dry-run
+aginit doctor
+aginit update
 ```
 
-Existing application files are preserved. Manifest additions and explicit configuration changes are intentional; rerunning the same initialization is idempotent. Framework scaffold failures stop the command instead of generating a substitute app.
+`doctor` checks Node.js, the project package manager, Git, Graft, Codex, the Skills CLI, and project configuration. It may download the Skills CLI through npx.
 
-Missing Graft or failed skill installation produces an actionable warning and a nonzero exit status. The scaffold is retained so you can resolve the prerequisite and rerun `aginit init`.
+`update` runs project-scoped `skills update` and rebuilds the Graft index. Disabled integrations are skipped; failed updates return a nonzero exit status.
 
-`--dry-run` prints planned operations without creating files or downloading framework tools. Upstream-generated files cannot be enumerated until the real scaffolder runs.
+## Behavior
 
----
+- Rerunning the same initialization is idempotent. Manifest additions and explicit configuration changes are applied without replacing application code.
+- Framework scaffold failures stop the command.
+- Missing Graft or failed skill installation returns a nonzero exit status. The scaffold is retained so you can fix the prerequisite and rerun `aginit init`.
+- `--dry-run` lists planned operations without writing files or downloading framework tools. Files produced by upstream scaffolders are only known after they run.
+- Playwright's starter test is skipped until you add an application URL and assertions. Generated test harnesses still need application-specific tests.
 
-## Development & Release Verification
+## Development
 
 ```bash
 pnpm install --frozen-lockfile
-pnpm check                 # typecheck, tests, build, dependency audit
-pnpm smoke                 # install the tarball and verify generated consumer projects
-pnpm smoke --frameworks    # additionally scaffold, test, build, and serve Vite and Next.js
-pnpm smoke --package-managers # verify native pnpm, Yarn, and Bun consumer commands
+pnpm check                    # typecheck (src + tests), tests, build, dependency audit
+pnpm check:skills             # compare the standard skill set with upstream (after pnpm build)
+pnpm smoke                    # verify projects generated from the packed tarball
+pnpm smoke --frameworks       # also scaffold, test, build, and serve Vite and Next.js
+pnpm smoke --package-managers # verify pnpm, Yarn, and Bun consumer commands
 npm pack --dry-run
 ```
 
-The framework smoke test downloads upstream tools and dependencies. The generated generic project has a working Vitest starter harness; application-specific assertions remain yours to write. `npm publish` runs the checks and base consumer smoke test before publication.
-
----
+Framework smoke tests download upstream tools and dependencies. `npm publish` runs `pnpm check` and the base consumer smoke test before publication.
 
-## Upstream Licenses Notice
-
-Aginit integrates and configures independent open-source software and skills:
-- **Graft**: Copyright © NanoNets / Graft contributors
-- **skills.sh**: Copyright © Vercel Inc. and contributors
-- **Matt Pocock Skills**: Copyright © Matt Pocock
-- **Impeccable**: Copyright © Peter Bak-Hansen
-- **agent-browser**: Copyright © Vercel Labs
-- **Playwright**: Copyright © Microsoft Corporation
-
-Each upstream tool is governed by its own independent license. Aginit does not vendor, alter, or relicense upstream software. For details, see [THIRD_PARTY_NOTICES.md](THIRD_PARTY_NOTICES.md).
-
----
-
-## Contributing & Security
-
-- **Contributing**: Please read [CONTRIBUTING.md](CONTRIBUTING.md) for guidelines on development and submitting pull requests.
-- **Security**: See [SECURITY.md](SECURITY.md) for our vulnerability reporting policy.
-
----
+See [CHANGELOG.md](CHANGELOG.md) for release notes, [CONTRIBUTING.md](CONTRIBUTING.md) for contribution guidelines, and [SECURITY.md](SECURITY.md) for vulnerability reporting.
 
 ## License
 
-[MIT](LICENSE) © 2026 Antonio Mancuso
+[MIT](LICENSE) © 2026 Antonio Mancuso.
+
+Upstream tools and skills retain their own licenses. Aginit does not vendor or relicense them. See [THIRD_PARTY_NOTICES.md](THIRD_PARTY_NOTICES.md).

package/THIRD_PARTY_NOTICES.md

@@ -19,6 +19,11 @@ Each integrated upstream tool is governed by its respective authors and licenses
   - Author: Matt Pocock
   - Repository: https://github.com/mattpocock/skills
 
+- **Humanizer**
+  - Project: Agent skill that removes signs of AI-generated writing from text
+  - Author: Blake Robbins / Humanizer contributors
+  - Repository: https://github.com/blader/humanizer
+
 - **Impeccable**
   - Project: Frontend craft & design system review skill
   - Author: Peter Bak-Hansen

package/dist/adapters/agents-md.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"agents-md.d.ts","sourceRoot":"","sources":["../../src/adapters/agents-md.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAKnD,wBAAgB,sBAAsB,CACpC,MAAM,EAAE,YAAY,EACpB,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAC/B,MAAM,CA+FR;AAED,wBAAgB,mBAAmB,CACjC,SAAS,EAAE,MAAM,EACjB,MAAM,EAAE,YAAY,EACpB,OAAO,GAAE;IAAE,SAAS,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAO,GACxE,OAAO,CA+BT"}
+{"version":3,"file":"agents-md.d.ts","sourceRoot":"","sources":["../../src/adapters/agents-md.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAKnD,wBAAgB,sBAAsB,CACpC,MAAM,EAAE,YAAY,EACpB,OAAO,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAC/B,MAAM,CA0HR;AAED,wBAAgB,mBAAmB,CACjC,SAAS,EAAE,MAAM,EACjB,MAAM,EAAE,YAAY,EACpB,OAAO,GAAE;IAAE,SAAS,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAO,GACxE,OAAO,CA+BT"}

package/dist/adapters/agents-md.js

@@ -22,15 +22,39 @@ export function generateAgentsMarkdown(config, scripts) {
     if (hasBrowser && hasCommand('test:e2e')) {
         testE2E = `- Test (E2E / Browser): \`${pmAdapter.runCmd('test:e2e')}\``;
     }
-    const selectedSkills = config.skills.sources.flatMap((source) => source.skills);
-    const engineering = selectedSkills.filter((skill) => ['tdd', 'code-review', 'diagnosing-bugs'].includes(skill));
+    // A source with an empty skill list (or `*`) installs every skill it ships.
+    const skillInstalled = (skill) => config.skills.sources.some((source) => source.skills.length === 0 || source.skills.includes('*') || source.skills.includes(skill));
+    const mattSkills = (() => {
+        const source = config.skills.sources.find((s) => s.package === 'mattpocock/skills');
+        if (!source)
+            return [];
+        return source.skills.length ? source.skills : ['*'];
+    })();
+    const hasSkills = config.skills.sources.length > 0;
+    const specSkillNames = ['to-spec', 'to-tickets', 'implement-spec'];
+    let engineeringCapability = '';
+    if (mattSkills.includes('*')) {
+        engineeringCapability =
+            '- **Engineering**: the full Matt Pocock skill set installed in `.agents/skills/` — start with `ask-matt` to route to the right one.';
+    }
+    else if (mattSkills.length) {
+        const engineering = mattSkills.filter((skill) => !specSkillNames.includes(skill));
+        if (engineering.length) {
+            engineeringCapability = `- **Engineering**: ${engineering.map((skill) => '`' + skill + '`').join(', ')}`;
+        }
+    }
+    let proseCapability = '';
+    if (skillInstalled('humanizer')) {
+        proseCapability =
+            '- **Prose & Copy**: Use `humanizer` skill to eliminate AI writing tells and refine documentation.';
+    }
     let uiCapability = '';
-    if (isWeb && selectedSkills.includes('impeccable')) {
+    if (isWeb && skillInstalled('impeccable')) {
         uiCapability =
             '- **UI & Design**: Use `impeccable` skill for frontend polish, design critique, and token craft.';
     }
     let browserCapability = '';
-    if (hasVisualAgent && selectedSkills.includes('agent-browser')) {
+    if (hasVisualAgent && skillInstalled('agent-browser')) {
         browserCapability =
             '- **Browser Verification**: Use `agent-browser` skill for interactive inspection and visual QA.';
     }
@@ -39,10 +63,9 @@ export function generateAgentsMarkdown(config, scripts) {
         graftCapability =
             '- **Codebase Graph**: Use `graft ask "<query>" --source` or `graft map` for orientation before raw grep.';
     }
-    let specWorkflow = '';
-    if (config.skills.workflow === 'spec' && selectedSkills.includes('to-spec')) {
-        specWorkflow = '- **Spec & Tickets Workflow**: `to-spec`, `to-tickets`, `implement-spec`';
-    }
+    const specCapability = skillInstalled('to-spec')
+        ? '- **Spec & Tickets Workflow**: `to-spec`, `to-tickets`, `implement-spec`'
+        : '';
     const sections = [
         `# ${config.name}`,
         '',
@@ -55,24 +78,23 @@ export function generateAgentsMarkdown(config, scripts) {
         '',
         '## Essential Commands',
         `- Package Manager: \`${pm}\``,
-        devCommand,
-        hasCommand('build') ? `- Build: \`${pmAdapter.runCmd('build')}\`` : '',
-        hasCommand('typecheck') ? `- Typecheck: \`${pmAdapter.runCmd('typecheck')}\`` : '',
-        hasCommand('test') ? `- Test: \`${pmAdapter.runCmd('test')}\`` : '',
-        hasCommand('test:unit') ? `- Unit Test: \`${pmAdapter.runCmd('test:unit')}\`` : '',
-        testE2E,
+        devCommand || undefined,
+        hasCommand('build') ? `- Build: \`${pmAdapter.runCmd('build')}\`` : undefined,
+        hasCommand('typecheck') ? `- Typecheck: \`${pmAdapter.runCmd('typecheck')}\`` : undefined,
+        hasCommand('test') ? `- Test: \`${pmAdapter.runCmd('test')}\`` : undefined,
+        hasCommand('test:unit') ? `- Unit Test: \`${pmAdapter.runCmd('test:unit')}\`` : undefined,
+        testE2E || undefined,
         '',
         '## AI Capabilities & Skills',
-        selectedSkills.length
+        hasSkills
             ? 'Configured skills install into `.agents/skills/` (shared by Antigravity and Codex):'
             : 'Skills installation is disabled in this configuration.',
-        engineering.length
-            ? `- **Engineering**: ${engineering.map((skill) => '\`' + skill + '\`').join(', ')}`
-            : '',
-        specWorkflow,
-        uiCapability,
-        browserCapability,
-        graftCapability,
+        engineeringCapability || undefined,
+        proseCapability || undefined,
+        specCapability || undefined,
+        uiCapability || undefined,
+        browserCapability || undefined,
+        graftCapability || undefined,
         '',
         '## Bootstrap & First Session',
         'When the user asks to "bootstrap this project" or kicks off a new initiative:',
@@ -81,8 +103,10 @@ export function generateAgentsMarkdown(config, scripts) {
         '3. Plan in small verifiable increments and implement test-first using installed skills.',
         ''
     ];
+    // Conditional lines are `undefined` and dropped; `''` entries are the blank
+    // separators between sections and must survive.
     return (sections
-        .filter((s) => s !== '')
+        .filter((s) => s !== undefined)
         .join('\n')
         .trim() + '\n');
 }

package/dist/adapters/agents-md.js.map

@@ -1 +1 @@
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package/dist/adapters/browser.js.map

@@ -1 +1 @@
-{"version":3,"file":"browser.js","sourceRoot":"","sources":["../../src/adapters/browser.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAE/C,MAAM,iBAAiB,GAAG;;;;;;;;;;;;;;;;;;;;CAoBzB,CAAC;AAEF,MAAM,UAAU,GAAG;;;;;;CAMlB,CAAC;AAEF,MAAM,UAAU,mBAAmB,CACjC,SAAiB,EACjB,UAAkD,EAAE;IAEpD,MAAM,EAAE,MAAM,GAAG,KAAK,EAAE,MAAM,GAAG,KAAK,EAAE,GAAG,OAAO,CAAC;IAEnD,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,sBAAsB,CAAC,EAAE,iBAAiB,EAAE;QAC7E,MAAM;QACN,MAAM;KACP,CAAC,CAAC;IAEH,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,KAAK,EAAE,eAAe,CAAC,EAAE,UAAU,EAAE;QACtE,MAAM;QACN,MAAM;KACP,CAAC,CAAC;AACL,CAAC"}
+{"version":3,"file":"browser.js","sourceRoot":"","sources":["../../src/adapters/browser.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAE/C,MAAM,iBAAiB,GAAG;;;;;;;;;;;;;;;;;;;;CAoBzB,CAAC;AAEF,MAAM,UAAU,GAAG;;;;;;CAMlB,CAAC;AAEF,MAAM,UAAU,mBAAmB,CACjC,SAAiB,EACjB,OAAO,GAA2C,EAAE;IAEpD,MAAM,EAAE,MAAM,GAAG,KAAK,EAAE,MAAM,GAAG,KAAK,EAAE,GAAG,OAAO,CAAC;IAEnD,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,sBAAsB,CAAC,EAAE,iBAAiB,EAAE;QAC7E,MAAM;QACN,MAAM;KACP,CAAC,CAAC;IAEH,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,KAAK,EAAE,eAAe,CAAC,EAAE,UAAU,EAAE;QACtE,MAAM;QACN,MAAM;KACP,CAAC,CAAC;AACL,CAAC"}

package/dist/adapters/git.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"git.d.ts","sourceRoot":"","sources":["../../src/adapters/git.ts"],"names":[],"mappings":"AAqCA,wBAAsB,QAAQ,CAC5B,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAO,GACnD,OAAO,CAAC,OAAO,CAAC,CA2DlB"}
+{"version":3,"file":"git.d.ts","sourceRoot":"","sources":["../../src/adapters/git.ts"],"names":[],"mappings":"AAuCA,wBAAsB,QAAQ,CAC5B,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAO,GACnD,OAAO,CAAC,OAAO,CAAC,CA2DlB"}

package/dist/adapters/git.js

@@ -32,6 +32,8 @@ blob-report/
 
 # Codebase intelligence cache (graft builds locally, git-ignored)
 /graft/
+# ripgrep hint graft writes next to that cache; regenerated by \`graft build\`
+.ignore
 `;
 export async function setupGit(targetDir, options = {}) {
     const { dryRun = false, silent = false } = options;

package/dist/adapters/git.js.map

@@ -1 +1 @@
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package/dist/adapters/graft.js.map

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package/dist/adapters/package-manager.js.map

@@ -1 +1 @@
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package/dist/adapters/skills.d.ts.map

@@ -1 +1 @@
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package/dist/adapters/skills.js

@@ -47,24 +47,28 @@ export async function installAllSkills(targetDir, sources, options = {}) {
     return { installed, failed };
 }
 export function getInstalledSkills(targetDir) {
+    // The lockfile only records what the skills CLI installed through aginit;
+    // skills added by hand live on disk only, so report the union of both.
+    const installed = new Set();
     const lockPath = path.join(targetDir, 'skills-lock.json');
     if (fileExists(lockPath)) {
         const lock = readJsonFile(lockPath);
-        if (lock && lock.skills) {
-            return Object.keys(lock.skills);
-        }
+        for (const name of Object.keys(lock?.skills ?? {}))
+            installed.add(name);
     }
-    // Check .agents/skills directory directly
     const skillsDir = path.join(targetDir, '.agents', 'skills');
     if (fileExists(skillsDir)) {
         try {
-            return fs.readdirSync(skillsDir).filter((f) => !f.startsWith('.'));
+            for (const entry of fs.readdirSync(skillsDir)) {
+                if (!entry.startsWith('.'))
+                    installed.add(entry);
+            }
         }
         catch {
-            return [];
+            // Unreadable directory: keep whatever the lockfile reported.
         }
     }
-    return [];
+    return [...installed];
 }
 export async function updateSkills(targetDir, options = {}) {
     const { dryRun = false, silent = false } = options;