@alisio/plugin-thesis 0.1.0

package/dist/chrome/detect.js

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+import { execFile } from "node:child_process";
+import { existsSync } from "node:fs";
+import { homedir } from "node:os";
+import { join } from "node:path";
+import { promisify } from "node:util";
+const execFileAsync = promisify(execFile);
+export function knownBrowserPaths(platform, env, home) {
+    const candidates = [];
+    if (platform === "win32") {
+        const bases = [env.ProgramFiles, env["ProgramFiles(x86)"], env.LOCALAPPDATA].filter((value) => Boolean(value));
+        const relatives = [
+            ["Google", "Chrome", "Application", "chrome.exe"],
+            ["BraveSoftware", "Brave-Browser", "Application", "brave.exe"],
+            ["Chromium", "Application", "chrome.exe"],
+            ["Microsoft", "Edge", "Application", "msedge.exe"],
+        ];
+        for (const base of bases)
+            for (const relative of relatives)
+                candidates.push(join(base, ...relative));
+    }
+    else if (platform === "darwin") {
+        const bases = ["/Applications", join(home, "Applications")];
+        const relatives = [
+            ["Google Chrome.app", "Contents", "MacOS", "Google Chrome"],
+            ["Brave Browser.app", "Contents", "MacOS", "Brave Browser"],
+            ["Chromium.app", "Contents", "MacOS", "Chromium"],
+            ["Microsoft Edge.app", "Contents", "MacOS", "Microsoft Edge"],
+        ];
+        for (const base of bases)
+            for (const relative of relatives)
+                candidates.push(join(base, ...relative));
+    }
+    else {
+        const directories = [
+            "/usr/bin",
+            "/usr/local/bin",
+            "/opt/google/chrome",
+            "/snap/bin",
+            "/var/lib/flatpak/exports/bin",
+            join(home, ".local", "bin"),
+        ];
+        const names = [
+            "google-chrome",
+            "google-chrome-stable",
+            "chromium",
+            "chromium-browser",
+            "brave-browser",
+            "microsoft-edge",
+            "microsoft-edge-stable",
+            "com.brave.Browser",
+            "com.google.Chrome",
+            "org.chromium.Chromium",
+            "chrome",
+        ];
+        for (const directory of directories)
+            for (const name of names)
+                candidates.push(join(directory, name));
+    }
+    return candidates;
+}
+export function pathBrowserNames(platform) {
+    if (platform === "win32")
+        return ["chrome", "brave", "msedge", "chromium"];
+    return [
+        "google-chrome",
+        "google-chrome-stable",
+        "chromium",
+        "chromium-browser",
+        "brave-browser",
+        "microsoft-edge",
+        "microsoft-edge-stable",
+    ];
+}
+async function defaultWhich(name) {
+    const lookup = process.platform === "win32" ? "where" : "which";
+    try {
+        const { stdout } = await execFileAsync(lookup, [name], { encoding: "utf8", timeout: 5000 });
+        return stdout
+            .split("\n")
+            .map((line) => line.trim())
+            .find(Boolean);
+    }
+    catch {
+        return undefined;
+    }
+}
+export async function detectChrome(overrides = {}) {
+    const deps = {
+        env: process.env,
+        platform: process.platform,
+        home: homedir(),
+        exists: existsSync,
+        which: defaultWhich,
+        ...overrides,
+    };
+    // `ALISIO_THESIS_CHROME=off` turns the Chrome fallback off (for example in tests or CI).
+    if (/^(off|none|0|false)$/i.test(deps.env.ALISIO_THESIS_CHROME ?? "")) {
+        return { browser: null, source: null };
+    }
+    for (const key of ["ALISIO_THESIS_CHROME", "PUPPETEER_EXECUTABLE_PATH"]) {
+        const value = deps.env[key];
+        if (value && deps.exists(value))
+            return { browser: value, source: key };
+    }
+    for (const candidate of new Set(knownBrowserPaths(deps.platform, deps.env, deps.home))) {
+        if (deps.exists(candidate))
+            return { browser: candidate, source: "known-path" };
+    }
+    for (const name of pathBrowserNames(deps.platform)) {
+        const found = await deps.which(name);
+        if (found)
+            return { browser: found, source: "path" };
+    }
+    return { browser: null, source: null };
+}
+//# sourceMappingURL=detect.js.map

package/dist/chrome/detect.js.map

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package/dist/claims.d.ts

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+import { type ClaimRecord } from "./types.js";
+/** Claims live in `claims/claims.jsonl`, one canonical JSON line each (spec 4.3 and 8.5). */
+export declare const claimsPath = "claims/claims.jsonl";
+export declare const anchorPattern: RegExp;
+/** Schema problems of one claim line, as readable messages. */
+export declare function validateClaimRecord(value: unknown): string[];
+export interface ClaimsParse {
+    records: ClaimRecord[];
+    errors: {
+        line: number;
+        message: string;
+    }[];
+}
+export declare function parseClaimsText(text: string | undefined): ClaimsParse;
+export declare function serializeClaims(records: readonly ClaimRecord[]): string;
+export declare const claimId: (counter: number) => string;
+export declare function readClaims(base: string): Promise<ClaimRecord[]>;
+export declare function writeClaims(base: string, records: readonly ClaimRecord[]): Promise<void>;
+//# sourceMappingURL=claims.d.ts.map

package/dist/claims.d.ts.map

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package/dist/claims.js

@@ -0,0 +1,99 @@
+import { readFile } from "node:fs/promises";
+import { join } from "node:path";
+import { atomicWrite, canonicalLine } from "./storage.js";
+import { claimKinds, idPatterns } from "./types.js";
+/** Claims live in `claims/claims.jsonl`, one canonical JSON line each (spec 4.3 and 8.5). */
+export const claimsPath = "claims/claims.jsonl";
+export const anchorPattern = /^[A-Za-z0-9_-]{1,40}$/;
+const isRecord = (value) => typeof value === "object" && value !== null && !Array.isArray(value);
+const stringList = (value) => Array.isArray(value) && value.every((entry) => typeof entry === "string");
+const knownKeys = new Set([
+    "id",
+    "section",
+    "anchor",
+    "text",
+    "kind",
+    "evidence",
+    "results",
+    "objectives",
+]);
+/** Schema problems of one claim line, as readable messages. */
+export function validateClaimRecord(value) {
+    if (!isRecord(value))
+        return ["claim must be a JSON object"];
+    const errors = [];
+    for (const key of Object.keys(value))
+        if (!knownKeys.has(key))
+            errors.push(`unknown field ${key}`);
+    if (typeof value.id !== "string" || !idPatterns.claim.test(value.id))
+        errors.push("id must look like CLM-0048");
+    if (typeof value.section !== "string" || !idPatterns.section.test(value.section))
+        errors.push("section must be a SEC id");
+    if (typeof value.anchor !== "string" || !anchorPattern.test(value.anchor))
+        errors.push("anchor is not a valid claim anchor");
+    if (typeof value.text !== "string" || !value.text.trim() || value.text.length > 400)
+        errors.push("text must be 1 to 400 characters");
+    if (!claimKinds.includes(value.kind))
+        errors.push("kind is not known");
+    if (!stringList(value.evidence) || !value.evidence.every((id) => idPatterns.evidence.test(id)))
+        errors.push("evidence must be a list of EVD ids");
+    if (value.results !== undefined &&
+        (!stringList(value.results) || !value.results.every((id) => idPatterns.claim.test(id))))
+        errors.push("results must be a list of CLM ids");
+    if (!stringList(value.objectives) ||
+        !value.objectives.every((id) => idPatterns.objective.test(id)))
+        errors.push("objectives must be a list of OBJ ids");
+    return errors;
+}
+export function parseClaimsText(text) {
+    const result = { records: [], errors: [] };
+    if (!text)
+        return result;
+    text.split("\n").forEach((raw, index) => {
+        if (!raw.trim())
+            return;
+        let value;
+        try {
+            value = JSON.parse(raw);
+        }
+        catch {
+            result.errors.push({ line: index + 1, message: "line is not valid JSON" });
+            return;
+        }
+        const problems = validateClaimRecord(value);
+        if (problems.length > 0) {
+            for (const message of problems)
+                result.errors.push({ line: index + 1, message });
+            return;
+        }
+        result.records.push(value);
+    });
+    return result;
+}
+const byId = (a, b) => (a.id < b.id ? -1 : a.id > b.id ? 1 : 0);
+export function serializeClaims(records) {
+    const lines = [...records].sort(byId).map((record) => canonicalLine(record));
+    return lines.length ? `${lines.join("\n")}\n` : "";
+}
+export const claimId = (counter) => `CLM-${String(counter).padStart(4, "0")}`;
+export async function readClaims(base) {
+    let text;
+    try {
+        text = await readFile(join(base, claimsPath), "utf8");
+    }
+    catch (error) {
+        if (error.code === "ENOENT")
+            return [];
+        throw error;
+    }
+    const parsed = parseClaimsText(text);
+    if (parsed.errors.length > 0) {
+        const first = parsed.errors[0];
+        throw new Error(`claims/claims.jsonl is invalid (line ${first?.line}: ${first?.message}); run /thesis:check`);
+    }
+    return parsed.records;
+}
+export async function writeClaims(base, records) {
+    await atomicWrite(join(base, claimsPath), serializeClaims(records));
+}
+//# sourceMappingURL=claims.js.map

package/dist/claims.js.map

@@ -0,0 +1 @@
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package/dist/cli.d.ts

@@ -0,0 +1,11 @@
+#!/usr/bin/env node
+export interface CliIo {
+    stdout(text: string): void;
+    stderr(text: string): void;
+    cwd: string;
+    env?: NodeJS.ProcessEnv;
+}
+/** Find the thesis root for a directory argument; throws a usage error when there is none. */
+export declare function resolveThesisRoot(directory: string): Promise<string>;
+export declare function main(argv: readonly string[], io: CliIo): Promise<number>;
+//# sourceMappingURL=cli.d.ts.map

package/dist/cli.d.ts.map

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package/dist/cli.js

@@ -0,0 +1,262 @@
+#!/usr/bin/env node
+import { realpathSync } from "node:fs";
+import { readFile, stat } from "node:fs/promises";
+import { join, resolve } from "node:path";
+import { fileURLToPath } from "node:url";
+import { cacheRoot } from "./cache.js";
+import { formatReport, loadProject, parseGates, runChecks } from "./checks/index.js";
+import { formatBuild } from "./coordinator.js";
+import { formatDoctor, runDoctor } from "./doctor.js";
+import { buildThesis } from "./render/build.js";
+import { generateBibtex, writeBibtex } from "./research/bibtex.js";
+import { readLibrary } from "./research/library.js";
+import { readState } from "./storage.js";
+import { checkStyleFiles, listStyles } from "./style-commands.js";
+import { idPatterns } from "./types.js";
+import { VERSION } from "./version.js";
+import { writeCheckReport } from "./workspace.js";
+const usage = `alisio-thesis ${VERSION}
+
+Usage:
+  alisio-thesis check [dir] [--json] [--gate G0,G7] [--section SEC-id] [--no-write]
+  alisio-thesis build [dir] [full|approved|SEC-id] [--pdfa] [--json]
+  alisio-thesis bib [dir] [--check]
+  alisio-thesis style list|check [dir] [--json]
+  alisio-thesis doctor [--json]
+
+check and build exit 0 on success, 1 when a check or the build fails and 2 on a usage or environment error.
+style check validates workspace styles and profiles (CSL-001, PRF-001, CSL-010) and exits 1 on an error.
+bib regenerates bibliography/references.bib from the evidence library (--check only compares and exits 1 on a difference).
+dir is the thesis folder, or a workspace that contains thesis/ (default: the current directory).
+`;
+async function isDirectory(path) {
+    try {
+        return (await stat(path)).isDirectory();
+    }
+    catch {
+        return false;
+    }
+}
+async function isFile(path) {
+    try {
+        return (await stat(path)).isFile();
+    }
+    catch {
+        return false;
+    }
+}
+/** Find the thesis root for a directory argument; throws a usage error when there is none. */
+export async function resolveThesisRoot(directory) {
+    const absolute = resolve(directory);
+    if (!(await isDirectory(absolute)))
+        throw new Error(`Not a directory: ${directory}`);
+    const state = await readState(absolute).catch(() => {
+        throw new Error("The thesis state file is unreadable");
+    });
+    if (state)
+        return join(absolute, state.root);
+    if (await isFile(join(absolute, "thesis.yaml")))
+        return absolute;
+    if (await isDirectory(join(absolute, "thesis")))
+        return join(absolute, "thesis");
+    throw new Error(`No thesis folder found in ${directory} (expected thesis.yaml or thesis/)`);
+}
+export async function main(argv, io) {
+    const [command, ...rest] = argv;
+    if (!command || command === "--help" || command === "-h" || command === "help") {
+        io.stdout(usage);
+        return command ? 0 : 2;
+    }
+    if (command === "--version" || command === "-v") {
+        io.stdout(`${VERSION}\n`);
+        return 0;
+    }
+    try {
+        if (command === "doctor") {
+            const json = rest.includes("--json");
+            const unknown = rest.filter((arg) => arg !== "--json");
+            if (unknown.length > 0)
+                throw new Error(`Unexpected argument: ${unknown[0]}`);
+            const report = await runDoctor();
+            io.stdout(json ? `${JSON.stringify(report, null, 2)}\n` : `${formatDoctor(report)}\n`);
+            return 0;
+        }
+        if (command === "check") {
+            let json = false;
+            let write = true;
+            let directory;
+            const selectedGates = [];
+            let section;
+            for (let index = 0; index < rest.length; index += 1) {
+                const arg = rest[index];
+                if (arg === "--json")
+                    json = true;
+                else if (arg === "--section") {
+                    index += 1;
+                    section = rest[index];
+                    if (!section || !idPatterns.section.test(section))
+                        throw new Error("--section needs a section id such as SEC-03");
+                }
+                else if (arg === "--no-write")
+                    write = false;
+                else if (arg === "--gate") {
+                    index += 1;
+                    const value = rest[index];
+                    if (!value)
+                        throw new Error("--gate needs a value such as G0 or G0,G7");
+                    selectedGates.push(...value.split(",").filter(Boolean));
+                }
+                else if (arg.startsWith("--"))
+                    throw new Error(`Unknown option ${arg}`);
+                else if (directory === undefined)
+                    directory = arg;
+                else
+                    throw new Error("Only one directory can be checked at a time");
+            }
+            const gates = parseGates(selectedGates);
+            const root = await resolveThesisRoot(directory ?? io.cwd);
+            // Section progress (EVD-010) lives in the workspace state, which sits above the thesis root.
+            const state = (await readState(resolve(directory ?? io.cwd)).catch(() => undefined)) ??
+                (await readState(resolve(root, "..")).catch(() => undefined));
+            const report = runChecks(await loadProject(root, state ? { state } : {}), {
+                gates,
+                ...(section ? { section } : {}),
+            });
+            if (write) {
+                await writeCheckReport(root, report).catch((error) => {
+                    io.stderr(`warning: could not write build/check-report.json: ${error.message}\n`);
+                });
+            }
+            io.stdout(json ? `${JSON.stringify(report, null, 2)}\n` : `${formatReport(report)}\n`);
+            return report.ok ? 0 : 1;
+        }
+        if (command === "build") {
+            let json = false;
+            let pdfa = false;
+            let html = false;
+            let scope = "full";
+            let section;
+            let directory;
+            for (const arg of rest) {
+                if (arg === "--json")
+                    json = true;
+                else if (arg === "--pdfa")
+                    pdfa = true;
+                else if (arg === "--html")
+                    html = true;
+                else if (arg === "full" || arg === "approved")
+                    scope = arg;
+                else if (idPatterns.section.test(arg)) {
+                    scope = "section";
+                    section = arg;
+                }
+                else if (arg.startsWith("--"))
+                    throw new Error(`Unknown option ${arg}`);
+                else if (directory === undefined)
+                    directory = arg;
+                else
+                    throw new Error("Only one directory can be built at a time");
+            }
+            const root = await resolveThesisRoot(directory ?? io.cwd);
+            const state = (await readState(resolve(directory ?? io.cwd)).catch(() => undefined)) ??
+                (await readState(resolve(root, "..")).catch(() => undefined));
+            const env = io.env ?? process.env;
+            const outcome = await buildThesis({
+                root,
+                scope,
+                ...(section ? { section } : {}),
+                ...(pdfa ? { pdfa: true } : {}),
+                ...(html ? { format: "html" } : {}),
+                ...(state ? { sections: state.sections } : {}),
+                env,
+                cacheRoot: cacheRoot(undefined, env),
+            });
+            io.stdout(json ? `${JSON.stringify(outcome, null, 2)}\n` : `${formatBuild(outcome)}\n`);
+            return outcome.ok ? 0 : 1;
+        }
+        if (command === "style") {
+            const [sub, ...args] = rest;
+            if (sub !== "list" && sub !== "check")
+                throw new Error("Usage: style list|check [dir] [--json]");
+            let json = false;
+            let directory;
+            for (const arg of args) {
+                if (arg === "--json")
+                    json = true;
+                else if (arg.startsWith("--"))
+                    throw new Error(`Unknown option ${arg}`);
+                else if (directory === undefined)
+                    directory = arg;
+                else
+                    throw new Error("Only one directory can be processed at a time");
+            }
+            const root = await resolveThesisRoot(directory ?? io.cwd);
+            const project = await loadProject(root);
+            const env = io.env ?? process.env;
+            if (sub === "list") {
+                io.stdout(`${listStyles(project)}\n`);
+                return 0;
+            }
+            const result = await checkStyleFiles(project, { env, cacheRoot: cacheRoot(undefined, env) });
+            io.stdout(json ? `${JSON.stringify(result.report, null, 2)}\n` : `${result.text}\n`);
+            return result.report.ok ? 0 : 1;
+        }
+        if (command === "bib") {
+            let check = false;
+            let directory;
+            for (const arg of rest) {
+                if (arg === "--check")
+                    check = true;
+                else if (arg.startsWith("--"))
+                    throw new Error(`Unknown option ${arg}`);
+                else if (directory === undefined)
+                    directory = arg;
+                else
+                    throw new Error("Only one directory can be processed at a time");
+            }
+            const root = await resolveThesisRoot(directory ?? io.cwd);
+            const records = await readLibrary(root);
+            const fresh = generateBibtex(records);
+            const path = join(root, "bibliography", "references.bib");
+            const current = await readFile(path, "utf8").catch(() => undefined);
+            if (check) {
+                const same = current === fresh;
+                io.stdout(same
+                    ? "references.bib is up to date\n"
+                    : "references.bib differs from the library (CIT-004)\n");
+                return same ? 0 : 1;
+            }
+            await writeBibtex(root, records);
+            io.stdout(`${current === fresh ? "references.bib already up to date" : "Wrote bibliography/references.bib"} (${records.length} record(s))\n`);
+            return 0;
+        }
+        throw new Error(`Unknown command: ${command}`);
+    }
+    catch (error) {
+        io.stderr(`${error instanceof Error ? error.message : String(error)}\n\n${usage}`);
+        return 2;
+    }
+}
+function invokedDirectly() {
+    try {
+        const entry = process.argv[1];
+        return (Boolean(entry) &&
+            realpathSync(entry) === realpathSync(fileURLToPath(import.meta.url)));
+    }
+    catch {
+        return false;
+    }
+}
+if (invokedDirectly()) {
+    main(process.argv.slice(2), {
+        stdout: (text) => process.stdout.write(text),
+        stderr: (text) => process.stderr.write(text),
+        cwd: process.cwd(),
+    }).then((code) => {
+        process.exitCode = code;
+    }, (error) => {
+        process.stderr.write(`${error instanceof Error ? error.message : String(error)}\n`);
+        process.exitCode = 2;
+    });
+}
+//# sourceMappingURL=cli.js.map

package/dist/cli.js.map

@@ -0,0 +1 @@
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package/dist/context.d.ts

@@ -0,0 +1,55 @@
+import type { PluginAPI, Question } from "@alisio/sdk";
+import { type LoadedProject, type LoadProjectOptions } from "./checks/index.js";
+import type { Delegator } from "./delegate.js";
+import type { BuildOutcome } from "./render/build.js";
+import type { BuildScope } from "./render/model.js";
+import type { ScholarClient } from "./research/client.js";
+import type { Brief, Finding, Gate, ThesisState } from "./types.js";
+/** Everything the phase workflows share. */
+export interface WorkflowContext {
+    api: PluginAPI;
+    now: () => Date;
+    projectOptions: LoadProjectOptions;
+    scholar: ScholarClient;
+    delegator: Delegator;
+    env: NodeJS.ProcessEnv;
+    cacheRoot: () => string;
+    /** Builds the thesis through the coordinator (records the build in the state). */
+    build?: (workspace: string, input: {
+        scope: BuildScope;
+        section?: string;
+        pdfa?: boolean;
+    }) => Promise<BuildOutcome>;
+}
+export interface Loaded {
+    workspace: string;
+    /** Session that issued the command; parent of every child session. */
+    sessionId: string;
+    state: ThesisState;
+    /** Absolute thesis root. */
+    base: string;
+    project: LoadedProject;
+    brief: Brief;
+}
+/** A command cannot run yet; the message is the reason, shown to the user as "Blocked: ...". */
+export declare class Blocked extends Error {
+    constructor(reason: string);
+}
+export declare function loadAll(context: WorkflowContext, workspace: string, sessionId: string): Promise<Loaded>;
+export declare const saveState: (loaded: Loaded) => Promise<void>;
+/** Re-read the project after files changed, keeping the in-memory state. */
+export declare function reload(context: WorkflowContext, loaded: Loaded): Promise<void>;
+export declare function gateFindings(loaded: Loaded, gate: Gate, now: () => Date): Finding[];
+export declare const errorsOf: (findings: readonly Finding[]) => Finding[];
+export declare const describeFinding: (finding: Finding) => string;
+/** Ask one interactive question; undefined when headless or when the user skipped it. */
+export declare function askOne(api: PluginAPI, label: string, question: Question): Promise<{
+    value: string;
+    text?: string;
+} | undefined>;
+/**
+ * Keep the phase in step with section approvals: all sections approved means review, anything less
+ * means sections. Later phases (final, submitted) are never moved back from here.
+ */
+export declare function syncPhase(state: ThesisState): void;
+//# sourceMappingURL=context.d.ts.map

package/dist/context.d.ts.map

@@ -0,0 +1 @@
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