@aleph-ai/tinyaleph 1.4.4 → 1.5.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (68) hide show
  1. package/backends/bioinformatics/binding.js +44 -52
  2. package/backends/bioinformatics/dna-computing.js +14 -23
  3. package/backends/bioinformatics/encoding.js +22 -30
  4. package/backends/bioinformatics/folding.js +24 -32
  5. package/backends/bioinformatics/genetic-code.js +17 -21
  6. package/backends/bioinformatics/index.js +12 -12
  7. package/backends/bioinformatics/transcription.js +5 -3
  8. package/backends/bioinformatics/translation.js +6 -4
  9. package/backends/cryptographic/index.js +10 -9
  10. package/backends/index.js +7 -6
  11. package/backends/interface.js +4 -1
  12. package/backends/scientific/index.js +7 -4
  13. package/backends/semantic/index.js +7 -4
  14. package/backends/semantic/surface.js +2 -1
  15. package/backends/semantic/two-layer.js +5 -3
  16. package/core/beacon.js +10 -9
  17. package/core/compound.js +4 -4
  18. package/core/crt-homology.js +40 -13
  19. package/core/enochian-vocabulary.js +5 -17
  20. package/core/enochian.js +3 -2
  21. package/core/entanglement.js +7 -7
  22. package/core/errors.js +2 -10
  23. package/core/events.js +7 -6
  24. package/core/fano.js +7 -6
  25. package/core/hilbert.js +40 -34
  26. package/core/hypercomplex.js +4 -2
  27. package/core/index.js +42 -80
  28. package/core/inference.js +6 -6
  29. package/core/lambda.js +5 -18
  30. package/core/llm.js +1 -1
  31. package/core/logger.js +3 -4
  32. package/core/prime.js +26 -1
  33. package/core/quaternion-semantics.js +3 -3
  34. package/core/reduction.js +5 -21
  35. package/core/resonance.js +20 -6
  36. package/core/rformer-crt.js +15 -29
  37. package/core/rformer-layers.js +12 -14
  38. package/core/rformer-tf.js +34 -43
  39. package/core/rformer.js +17 -32
  40. package/core/sieve.js +8 -3
  41. package/core/symbols/archetypes.js +3 -3
  42. package/core/symbols/base.js +4 -4
  43. package/core/symbols/elements.js +6 -3
  44. package/core/symbols/hieroglyphs.js +3 -3
  45. package/core/symbols/iching.js +3 -3
  46. package/core/symbols/index.js +32 -18
  47. package/core/symbols/tarot.js +6 -3
  48. package/core/symbols.js +26 -4
  49. package/core/topology.js +3 -14
  50. package/core/types.js +3 -14
  51. package/engine/aleph.js +8 -6
  52. package/engine/index.js +4 -2
  53. package/index.js +3 -2
  54. package/modular.js +18 -41
  55. package/package.json +4 -2
  56. package/physics/collapse.js +10 -11
  57. package/physics/entropy.js +8 -8
  58. package/physics/index.js +70 -102
  59. package/physics/kuramoto-coupled-ladder.js +10 -14
  60. package/physics/kuramoto.js +5 -2
  61. package/physics/lyapunov.js +7 -7
  62. package/physics/oscillator.js +5 -1
  63. package/physics/primeon_z_ladder_multi.js +7 -9
  64. package/physics/primeon_z_ladder_u.js +8 -9
  65. package/physics/stochastic-kuramoto.js +7 -7
  66. package/physics/sync-models.js +11 -14
  67. package/telemetry/index.js +1 -1
  68. package/telemetry/metrics.js +3 -8
package/physics/index.js CHANGED
@@ -2,146 +2,114 @@
2
2
  * Physics engine - exports all physics modules
3
3
  */
4
4
 
5
- const { Oscillator, OscillatorBank } = require('./oscillator');
6
- const { KuramotoModel } = require('./kuramoto');
7
- const {
8
- shannonEntropy,
5
+ import { Oscillator, OscillatorBank } from './oscillator.js';
6
+ import { KuramotoModel } from './kuramoto.js';
7
+
8
+ import { shannonEntropy,
9
9
  stateEntropy,
10
10
  coherence,
11
11
  mutualInformation,
12
12
  relativeEntropy,
13
13
  jointEntropy,
14
- oscillatorEntropy
15
- } = require('./entropy');
16
- const {
17
- estimateLyapunov,
14
+ oscillatorEntropy } from './entropy.js';
15
+ import { estimateLyapunov,
18
16
  classifyStability,
19
17
  adaptiveCoupling,
20
18
  localLyapunov,
21
19
  delayEmbedding,
22
- stabilityMargin
23
- } = require('./lyapunov');
24
- const {
25
- collapseProbability,
20
+ stabilityMargin } from './lyapunov.js';
21
+ import { collapseProbability,
26
22
  shouldCollapse,
27
23
  measureState,
28
24
  collapseToIndex,
29
25
  bornMeasurement,
30
26
  partialCollapse,
31
- applyDecoherence
32
- } = require('./collapse');
27
+ applyDecoherence } from './collapse.js';
33
28
 
34
29
  // Extended synchronization models
35
- const {
36
- NetworkKuramoto,
30
+ import { NetworkKuramoto,
37
31
  AdaptiveKuramoto,
38
32
  SakaguchiKuramoto,
39
33
  SmallWorldKuramoto,
40
34
  MultiSystemCoupling,
41
35
  createHierarchicalCoupling,
42
- createPeerCoupling
43
- } = require('./sync-models');
36
+ createPeerCoupling } from './sync-models.js';
44
37
 
45
38
  // Stochastic Kuramoto models
46
- const {
47
- StochasticKuramoto,
39
+ import { StochasticKuramoto,
48
40
  ColoredNoiseKuramoto,
49
41
  ThermalKuramoto,
50
- gaussianRandom
51
- } = require('./stochastic-kuramoto');
42
+ gaussianRandom } from './stochastic-kuramoto.js';
52
43
 
53
44
  // Primeon Z-Ladder with canonical U evolution
54
- const {
55
- PrimeonZLadderU,
45
+ import { PrimeonZLadderU,
56
46
  createPrimeonLadder,
57
47
  shannonEntropyNats,
58
48
  probsOf,
59
- normalize: normalizeComplex,
60
- C: Complex
61
- } = require('./primeon_z_ladder_u');
49
+ normalize as normalizeComplex,
50
+ C as Complex } from './primeon_z_ladder_u.js';
62
51
 
63
52
  // Multi-channel Primeon Z-Ladder
64
- const {
65
- ZChannel,
53
+ import { ZChannel,
66
54
  PrimeonZLadderMulti,
67
55
  createMultiChannelLadder,
68
- createAdiabaticSchedule
69
- } = require('./primeon_z_ladder_multi');
56
+ createAdiabaticSchedule } from './primeon_z_ladder_multi.js';
70
57
 
71
58
  // Kuramoto-coupled ladder (hybrid quantum + oscillator dynamics)
72
- const {
73
- KuramotoCoupledLadder,
59
+ import { KuramotoCoupledLadder,
74
60
  createKuramotoLadder,
75
61
  runCollapsePressureExperiment,
76
62
  kuramotoOrderParameter,
77
- getPhase
78
- } = require('./kuramoto-coupled-ladder');
63
+ getPhase } from './kuramoto-coupled-ladder.js';
79
64
 
80
- module.exports = {
81
- // Oscillators
82
- Oscillator,
83
- OscillatorBank,
84
- KuramotoModel,
85
-
86
- // Extended synchronization models
87
- NetworkKuramoto,
88
- AdaptiveKuramoto,
89
- SakaguchiKuramoto,
90
- SmallWorldKuramoto,
91
- MultiSystemCoupling,
92
- createHierarchicalCoupling,
93
- createPeerCoupling,
94
-
95
- // Stochastic Kuramoto models
96
- StochasticKuramoto,
97
- ColoredNoiseKuramoto,
98
- ThermalKuramoto,
99
- gaussianRandom,
100
-
101
- // Primeon Z-Ladder (canonical U evolution)
102
- PrimeonZLadderU,
103
- createPrimeonLadder,
104
- shannonEntropyNats,
105
- probsOf,
106
- normalizeComplex,
107
- Complex,
108
-
109
- // Multi-channel Primeon Z-Ladder
110
- ZChannel,
111
- PrimeonZLadderMulti,
112
- createMultiChannelLadder,
113
- createAdiabaticSchedule,
114
-
115
- // Kuramoto-coupled ladder (hybrid model)
116
- KuramotoCoupledLadder,
117
- createKuramotoLadder,
118
- runCollapsePressureExperiment,
119
- kuramotoOrderParameter,
120
- getPhase,
121
-
122
- // Entropy & Information
123
- shannonEntropy,
124
- stateEntropy,
125
- coherence,
126
- mutualInformation,
127
- relativeEntropy,
128
- jointEntropy,
129
- oscillatorEntropy,
130
-
131
- // Lyapunov stability
132
- estimateLyapunov,
133
- classifyStability,
134
- adaptiveCoupling,
135
- localLyapunov,
136
- delayEmbedding,
137
- stabilityMargin,
138
-
139
- // State collapse
140
- collapseProbability,
141
- shouldCollapse,
142
- measureState,
143
- collapseToIndex,
144
- bornMeasurement,
145
- partialCollapse,
146
- applyDecoherence
65
+ export {
66
+ Oscillator,
67
+ OscillatorBank,
68
+ KuramotoModel,
69
+ NetworkKuramoto,
70
+ AdaptiveKuramoto,
71
+ SakaguchiKuramoto,
72
+ SmallWorldKuramoto,
73
+ MultiSystemCoupling,
74
+ createHierarchicalCoupling,
75
+ createPeerCoupling,
76
+ StochasticKuramoto,
77
+ ColoredNoiseKuramoto,
78
+ ThermalKuramoto,
79
+ gaussianRandom,
80
+ PrimeonZLadderU,
81
+ createPrimeonLadder,
82
+ shannonEntropyNats,
83
+ probsOf,
84
+ normalizeComplex,
85
+ Complex,
86
+ ZChannel,
87
+ PrimeonZLadderMulti,
88
+ createMultiChannelLadder,
89
+ createAdiabaticSchedule,
90
+ KuramotoCoupledLadder,
91
+ createKuramotoLadder,
92
+ runCollapsePressureExperiment,
93
+ kuramotoOrderParameter,
94
+ getPhase,
95
+ shannonEntropy,
96
+ stateEntropy,
97
+ coherence,
98
+ mutualInformation,
99
+ relativeEntropy,
100
+ jointEntropy,
101
+ oscillatorEntropy,
102
+ estimateLyapunov,
103
+ classifyStability,
104
+ adaptiveCoupling,
105
+ localLyapunov,
106
+ delayEmbedding,
107
+ stabilityMargin,
108
+ collapseProbability,
109
+ shouldCollapse,
110
+ measureState,
111
+ collapseToIndex,
112
+ bornMeasurement,
113
+ partialCollapse,
114
+ applyDecoherence
147
115
  };
@@ -21,19 +21,15 @@
21
21
 
22
22
  'use strict';
23
23
 
24
- const {
25
- PrimeonZLadderMulti,
24
+ import { PrimeonZLadderMulti,
26
25
  ZChannel,
27
26
  createMultiChannelLadder,
28
- createAdiabaticSchedule
29
- } = require('./primeon_z_ladder_multi');
27
+ createAdiabaticSchedule } from './primeon_z_ladder_multi.js';
30
28
 
31
- const {
32
- C,
29
+ import { C,
33
30
  shannonEntropyNats,
34
31
  probsOf,
35
- normalize
36
- } = require('./primeon_z_ladder_u');
32
+ normalize } from './primeon_z_ladder_u.js';
37
33
 
38
34
  /**
39
35
  * Extract phase from complex number
@@ -594,10 +590,10 @@ function runCollapsePressureExperiment(opts = {}) {
594
590
  return results;
595
591
  }
596
592
 
597
- module.exports = {
598
- KuramotoCoupledLadder,
599
- createKuramotoLadder,
600
- runCollapsePressureExperiment,
601
- kuramotoOrderParameter,
602
- getPhase
593
+ export {
594
+ KuramotoCoupledLadder,
595
+ createKuramotoLadder,
596
+ runCollapsePressureExperiment,
597
+ kuramotoOrderParameter,
598
+ getPhase
603
599
  };
@@ -1,7 +1,8 @@
1
1
  /**
2
2
  * Kuramoto synchronization dynamics
3
3
  */
4
- const { OscillatorBank } = require('./oscillator');
4
+
5
+ import { OscillatorBank } from './oscillator.js';
5
6
 
6
7
  class KuramotoModel extends OscillatorBank {
7
8
  constructor(frequencies, couplingStrength = 0.3) {
@@ -88,4 +89,6 @@ class KuramotoModel extends OscillatorBank {
88
89
  }
89
90
  }
90
91
 
91
- module.exports = { KuramotoModel };
92
+ export {
93
+ KuramotoModel
94
+ };
@@ -70,11 +70,11 @@ function stabilityMargin(lyapunovExponent, threshold = 0.1) {
70
70
  return threshold - lyapunovExponent;
71
71
  }
72
72
 
73
- module.exports = {
74
- estimateLyapunov,
75
- classifyStability,
76
- adaptiveCoupling,
77
- localLyapunov,
78
- delayEmbedding,
79
- stabilityMargin
73
+ export {
74
+ estimateLyapunov,
75
+ classifyStability,
76
+ adaptiveCoupling,
77
+ localLyapunov,
78
+ delayEmbedding,
79
+ stabilityMargin
80
80
  };
@@ -5,6 +5,7 @@
5
5
  * by input to become active. This ensures the field response
6
6
  * reflects the input, not a default full-amplitude state.
7
7
  */
8
+
8
9
  class Oscillator {
9
10
  constructor(frequency, phase = 0, amplitude = 0) { // Start quiescent!
10
11
  this.freq = frequency;
@@ -92,4 +93,7 @@ class OscillatorBank {
92
93
  }
93
94
  }
94
95
 
95
- module.exports = { Oscillator, OscillatorBank };
96
+ // Named exports for ESM compatibility
97
+ export { Oscillator, OscillatorBank };
98
+
99
+ export default { Oscillator, OscillatorBank };
@@ -16,13 +16,11 @@
16
16
 
17
17
  'use strict';
18
18
 
19
- const {
20
- PrimeonZLadderU,
19
+ import { PrimeonZLadderU,
21
20
  C,
22
21
  shannonEntropyNats,
23
22
  probsOf,
24
- normalize
25
- } = require('./primeon_z_ladder_u');
23
+ normalize } from './primeon_z_ladder_u.js';
26
24
 
27
25
  /**
28
26
  * Z Channel configuration
@@ -661,9 +659,9 @@ function createAdiabaticSchedule(J0, J1, T, schedule = 'linear') {
661
659
  }
662
660
  }
663
661
 
664
- module.exports = {
665
- ZChannel,
666
- PrimeonZLadderMulti,
667
- createMultiChannelLadder,
668
- createAdiabaticSchedule
662
+ export {
663
+ ZChannel,
664
+ PrimeonZLadderMulti,
665
+ createMultiChannelLadder,
666
+ createAdiabaticSchedule
669
667
  };
@@ -13,6 +13,7 @@
13
13
  /**
14
14
  * Minimal Complex number helpers (intentionally tiny for predictable perf).
15
15
  */
16
+
16
17
  class C {
17
18
  constructor(re = 0, im = 0) {
18
19
  this.re = re;
@@ -481,13 +482,11 @@ function createPrimeonLadder(primes, opts = {}) {
481
482
  return ladder;
482
483
  }
483
484
 
484
- module.exports = {
485
- PrimeonZLadderU,
486
- createPrimeonLadder,
487
- // Export helpers for potential reuse in entropy tooling
488
- shannonEntropyNats,
489
- probsOf,
490
- normalize,
491
- // Export Complex class for advanced usage
492
- C
485
+ export {
486
+ PrimeonZLadderU,
487
+ createPrimeonLadder,
488
+ shannonEntropyNats,
489
+ probsOf,
490
+ normalize,
491
+ C
493
492
  };
@@ -13,12 +13,12 @@
13
13
 
14
14
  'use strict';
15
15
 
16
- const { KuramotoModel } = require('./kuramoto');
17
-
18
16
  /**
19
17
  * Box-Muller transform for Gaussian random numbers
20
18
  * @returns {number} Standard normal random variable
21
19
  */
20
+ import { KuramotoModel } from './kuramoto.js';
21
+
22
22
  function gaussianRandom() {
23
23
  const u1 = Math.random();
24
24
  const u2 = Math.random();
@@ -558,9 +558,9 @@ class ThermalKuramoto extends StochasticKuramoto {
558
558
  }
559
559
  }
560
560
 
561
- module.exports = {
562
- StochasticKuramoto,
563
- ColoredNoiseKuramoto,
564
- ThermalKuramoto,
565
- gaussianRandom
561
+ export {
562
+ StochasticKuramoto,
563
+ ColoredNoiseKuramoto,
564
+ ThermalKuramoto,
565
+ gaussianRandom
566
566
  };
@@ -9,9 +9,6 @@
9
9
  * - MultiSystemCoupling: Cross-system synchronization
10
10
  */
11
11
 
12
- const { KuramotoModel } = require('./kuramoto');
13
- const { OscillatorBank } = require('./oscillator');
14
-
15
12
  /**
16
13
  * NetworkKuramoto - Topology-Aware Coupling
17
14
  *
@@ -20,6 +17,9 @@ const { OscillatorBank } = require('./oscillator');
20
17
  *
21
18
  * Enables modular synchronization respecting semantic neighborhoods.
22
19
  */
20
+ import { KuramotoModel } from './kuramoto.js';
21
+ import { OscillatorBank } from './oscillator.js';
22
+
23
23
  class NetworkKuramoto extends KuramotoModel {
24
24
  /**
25
25
  * @param {number[]} frequencies - Natural frequencies
@@ -756,15 +756,12 @@ function createPeerCoupling(frequencies, numPeers = 3, strength = 0.15) {
756
756
  return new MultiSystemCoupling(systems, G);
757
757
  }
758
758
 
759
- module.exports = {
760
- // Core extended models
761
- NetworkKuramoto,
762
- AdaptiveKuramoto,
763
- SakaguchiKuramoto,
764
- SmallWorldKuramoto,
765
- MultiSystemCoupling,
766
-
767
- // Factory functions
768
- createHierarchicalCoupling,
769
- createPeerCoupling
759
+ export {
760
+ NetworkKuramoto,
761
+ AdaptiveKuramoto,
762
+ SakaguchiKuramoto,
763
+ SmallWorldKuramoto,
764
+ MultiSystemCoupling,
765
+ createHierarchicalCoupling,
766
+ createPeerCoupling
770
767
  };
@@ -10,7 +10,7 @@
10
10
  * Browser-compatible: No Node.js dependencies.
11
11
  *
12
12
  * @example
13
- * const { MetricRegistry, Counter, Gauge } = require('@aleph-ai/tinyaleph/telemetry');
13
+ * import { MetricRegistry, Counter, Gauge } from '@aleph-ai/tinyaleph/telemetry';
14
14
  *
15
15
  * const registry = new MetricRegistry({ prefix: 'myapp_' });
16
16
  * const requests = registry.counter('requests_total', { help: 'Total requests' });
@@ -12,12 +12,12 @@
12
12
  * Extracted from apps/sentient/lib/telemetry.js for library reuse.
13
13
  */
14
14
 
15
- const { SimpleEventEmitter } = require('../core/errors');
16
-
17
15
  // ============================================================================
18
16
  // METRIC TYPES
19
17
  // ============================================================================
20
18
 
19
+ import { SimpleEventEmitter } from '../core/errors.js';
20
+
21
21
  const MetricType = {
22
22
  COUNTER: 'counter',
23
23
  GAUGE: 'gauge',
@@ -692,17 +692,12 @@ class MetricRegistry extends SimpleEventEmitter {
692
692
  // EXPORTS
693
693
  // ============================================================================
694
694
 
695
- module.exports = {
696
- // Metric types
695
+ export {
697
696
  MetricType,
698
-
699
- // Metric classes
700
697
  Metric,
701
698
  Counter,
702
699
  Gauge,
703
700
  Histogram,
704
701
  Summary,
705
-
706
- // Registry
707
702
  MetricRegistry
708
703
  };